Citrus Sinensis ID: 010821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
Protein Sequence
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEcccccEEEcccccEEEEEEcccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEEcccccccEEEEcccccHHHHHHHHHHHccccccEEEcccccccccEEEEEccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEEEEHHHHHHcccccccccccccHHHHHHcccccccccccccccEEEEcccccHHHHHHHHHccccEEEEEEEccccEEEEEEEHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEcEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEcccccccccccccEEEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHHccccccEEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHcccHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEccccccccccEEEEEEcHHHHHHHHHHHHHHcccccHHHcccHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHccccccccccccEHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHHHHHHHc
Coil and Loop (DISEMBL)
mntgqmfnpgmdaarepasvpdtvlipmrfvwpyggrsvflsgsfnrwsellpmspvegcptvfqiiwsippgyhqykfcvdgewrhdehqpfisseyGIVNTVLlatepnfmhginqgmpsgsnmdvdnEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSsrlqgismaplwdfskarfvgvlsASDFILILRELgnhgsnlteeelETHTISAWKEGKAYLNRQIdshgkafprplvyagpndnlKDVARKILhnevatvpiihsssqdgsfpqLLHIASLSGILKCVCRYfrhcssslpilklpicaipvgtwvpkigepnrrplamlrpsASLSAALNLLVQAqvssipivddndslldiYCRSDITALAKDKAYAHINLSEMTIHQALQlgqdsyspyelrsqrcqmclpsdtLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Flexible Loop (DISEMBL)
mntgqmfnpgmdaarepasvpDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERIseadlqvsrHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSsipivddndsLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEagskrvegivslsdIFKFLLG
Low Complexity Region (SEG)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPsaslsaalnllvqaqvsSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered region (IsUnstruct)
*********************DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI*******************LV*****************DLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL*
Disordered Region (DISOPRED)
*************************IPMRFVWPYGGRSVFLSGSFNRWSELLPMSP*EGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered Region (DISEMBL)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered Region (DISPRO)
*******************VPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEP***************************************RISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	500	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.97	0.995	0.687	0.0
P54619	331	5'-AMP-activated protein	yes	no	0.574	0.867	0.327	3e-33
P58108	330	5'-AMP-activated protein	yes	no	0.574	0.869	0.327	3e-33
Q09138	330	5'-AMP-activated protein	yes	no	0.574	0.869	0.321	4e-33
P80385	330	5'-AMP-activated protein	yes	no	0.578	0.875	0.325	5e-33
O54950	330	5'-AMP-activated protein	yes	no	0.57	0.863	0.334	8e-33
Q8T277	577	5'-AMP-activated protein	yes	no	0.596	0.516	0.310	8e-33
Q91WG5	566	5'-AMP-activated protein	no	no	0.568	0.501	0.307	2e-31
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.568	0.499	0.304	1e-30
Q5R4S0	524	5'-AMP-activated protein	no	no	0.568	0.541	0.301	3e-30

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/496 (68%), Positives = 399/496 (80%), Gaps = 11/496 (2%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   +D++R  ++    +L P RFVWPYGGR VFLSGSF RW+E +PMSP+EGCPTVFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I ++ PGYHQYKF VDGEWRHDEHQPF+S   G+VNT+ +        G +      SN
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFITGPDMVPAGFSPETLGRSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVD + F R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+AL
Sbjct: 121 MDVD-DVFLRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIAL 175

Query: 186 DIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 245
           D++LPVKQAFHILYEQ     GI +APLWDF K +FVGVL   DFILILRELG HGSNLT
Sbjct: 176 DVNLPVKQAFHILYEQ-----GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 230

Query: 246 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 305
           EEELETHTI+AWKEGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP+
Sbjct: 231 EEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPV 290

Query: 306 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 365
           I+SS QDGS+PQLLH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE +
Sbjct: 291 IYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESS 350

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
            +PLA LRP ASL +AL LLVQA+VSSIP+VDDNDSL+DIY RSDITALAKDKAYA I+L
Sbjct: 351 SKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHL 410

Query: 426 SEMTIHQALQLGQDSYSPYEL-RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
            +MT+HQALQLGQD+  PY +   QRC MCL SD+L KVMERLANPGVRRLVIVEAGSKR
Sbjct: 411 DDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKR 470

Query: 485 VEGIVSLSDIFKFLLG 500
           VEGI+SLSD+F+FLLG
Sbjct: 471 VEGIISLSDVFQFLLG 486

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 52/339 (15%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG+L
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGML 86

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   P
Sbjct: 87  TITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISP 134

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 344
           N +L D    ++ N++  +P+I   S +      L+I +   ILK               
Sbjct: 135 NASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------F 175

Query: 345 LKLPICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND 400
           LKL I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+  
Sbjct: 176 LKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG 235

Query: 401 SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTL 460
            ++DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL
Sbjct: 236 RVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETL 285

Query: 461 HKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 286 ETIINRLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 52/339 (15%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG+L
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGML 86

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   P
Sbjct: 87  TITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISP 134

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 344
           N +L D    ++ N++  +P+I   S +      L+I +   ILK               
Sbjct: 135 NASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------F 175

Query: 345 LKLPICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND 400
           LKL I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+  
Sbjct: 176 LKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG 235

Query: 401 SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTL 460
            ++DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL
Sbjct: 236 RVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETL 285

Query: 461 HKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 286 ETIINRLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 166/339 (48%), Gaps = 52/339 (15%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG+L
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGML 86

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S L +  ELE H I  W+E   YL            +PLV   P
Sbjct: 87  TITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQDSF--------KPLVCISP 134

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 344
           N +L D    ++ N++  +P+I   S +      L+I +   ILK               
Sbjct: 135 NASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------F 175

Query: 345 LKLPICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND 400
           LKL I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+  
Sbjct: 176 LKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG 235

Query: 401 SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTL 460
            ++DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL
Sbjct: 236 RVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETL 285

Query: 461 HKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 286 ETIINRLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  142 bits (359), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 169/341 (49%), Gaps = 52/341 (15%)

Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVG 223
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVG 83

Query: 224 VLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
           +L+ +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV  
Sbjct: 84  MLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCI 131

Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
            PN +L D    ++ N++  +P+I   S +      L+I +   ILK             
Sbjct: 132 SPNASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK------------- 173

Query: 343 PILKLPICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD 398
             LKL I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+
Sbjct: 174 -FLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE 232

Query: 399 NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSD 458
              ++DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +
Sbjct: 233 KGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHE 282

Query: 459 TLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           TL  ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 283 TLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  142 bits (357), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 171/341 (50%), Gaps = 56/341 (16%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG+L
Sbjct: 31  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGML 85

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   P
Sbjct: 86  TITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISP 133

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 344
           N +L D    ++ N++  +P+I   S +      L+I +   ILK               
Sbjct: 134 NASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------F 174

Query: 345 LKLPICAIPVGTWVPK------IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD 398
           LKL I   P   ++ K      IG      +AM+R +  +  AL + VQ +VS++P+VD+
Sbjct: 175 LKLFITEFPKPEFMSKSLQELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE 232

Query: 399 NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSD 458
              ++DIY + D+  LA +K Y ++++S   + +ALQ  +  Y    L+      C   +
Sbjct: 233 KGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK------CYLHE 282

Query: 459 TLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           TL  ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 283 TLETIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  142 bits (357), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 168/338 (49%), Gaps = 40/338 (11%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           FL  HT Y+++P SGKVV LD  L VK AF+ L E      GI  APLW+  +  F G++
Sbjct: 270 FLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEE-----NGIKSAPLWNSEQHDFTGMI 324

Query: 226 SASDFI-LILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAG 283
           + SDFI ++L       SN   +++  H I   W+E                P  L+   
Sbjct: 325 TVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISV-----------ERPSSLISTE 373

Query: 284 PNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP 343
           P  NL D A  +L  ++  +P++     +     +LHI + S IL  + + F      L 
Sbjct: 374 PETNLYDAASLLLCYKIHRLPVVDKKDTNS----ILHILTHSRILAFMMKSFPQLPEKL- 428

Query: 344 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS-L 402
            L +PI ++ +GT+   +      PL            L LL + ++S++PI+D   S +
Sbjct: 429 -LSIPIGSLGIGTFATVVTVMTHTPLV---------EVLELLSEKKISAVPIIDSETSKI 478

Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
           +D+Y +SD+T ++K    +  +L+ + +HQ L     +++    R ++   C   D L  
Sbjct: 479 VDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQIYTCTRFDKLGD 533

Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           V+ER     V RLV +++ SK+VEGI+SLSDI  +LL 
Sbjct: 534 VIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 174/342 (50%), Gaps = 58/342 (16%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW+  K  FVG+L
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLWESKKQSFVGML 315

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S + +  ELE H I  W+E   YL            +PLV   P
Sbjct: 316 TITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISP 363

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP- 343
           + +L D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P 
Sbjct: 364 DASLFDAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPK 414

Query: 344 --ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS 401
              +K  +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  
Sbjct: 415 PAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGK 465

Query: 402 LLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSD 458
           ++DIY + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   +
Sbjct: 466 VVDIYSKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCSKLE 512

Query: 459 TLHKVMERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 499
           TL  +++R+    V RLV+V EA S  + GI+SLSDI + L+
Sbjct: 513 TLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 58/342 (16%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW+  K  FVG+L
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLWESKKQSFVGML 318

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S + +  ELE H I  W+E   YL            +PLV   P
Sbjct: 319 TITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISP 366

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP- 343
           + +L D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P 
Sbjct: 367 DASLFDAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPK 417

Query: 344 --ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS 401
              +K  +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  
Sbjct: 418 PAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGK 468

Query: 402 LLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSD 458
           ++DIY + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   +
Sbjct: 469 VVDIYSKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCNKLE 515

Query: 459 TLHKVMERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 499
            L  +++R+    V RLV+V EA S  + GI+SLSDI + L+
Sbjct: 516 ILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 58/342 (16%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW+  K  FVG+L
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLWESKKQSFVGML 273

Query: 226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
           + +DFI IL     + S + +  ELE H I  W+E   YL            +PLV   P
Sbjct: 274 TITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISP 321

Query: 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP- 343
           + +L D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P 
Sbjct: 322 DASLLDAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPK 372

Query: 344 --ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS 401
              +K  +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  
Sbjct: 373 PAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGK 423

Query: 402 LLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSD 458
           ++DIY + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   +
Sbjct: 424 VVDIYSKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCNKLE 470

Query: 459 TLHKVMERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 499
            L  +++R+    V RLV+  EA S  + GI+SLSDI + L+
Sbjct: 471 ILETIVDRIVRAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
356529781	492	PREDICTED: sucrose nonfermenting 4-like	0.98	0.995	0.796	0.0
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.98	0.997	0.787	0.0
449450664	491	PREDICTED: sucrose nonfermenting 4-like	0.98	0.997	0.788	0.0
225432326	491	PREDICTED: sucrose nonfermenting 4-like	0.98	0.997	0.786	0.0
224123196	464	predicted protein [Populus trichocarpa]	0.928	1.0	0.780	0.0
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.972	0.995	0.746	0.0
356563906	482	PREDICTED: sucrose nonfermenting 4-like	0.956	0.991	0.739	0.0
356519984	480	PREDICTED: sucrose nonfermenting 4-like	0.954	0.993	0.747	0.0
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.96	0.995	0.740	0.0
224107351	447	predicted protein [Populus trichocarpa]	0.894	1.0	0.758	0.0

>gi|356529781|ref|XP_003533466.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/496 (79%), Positives = 445/496 (89%), Gaps = 6/496 (1%)

Query: 6   MFNPGMDAAREPAS-VPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVF 64
           MF   MD+AR+ A  V  TVLIPMRFVWPYGGRSVFLSGSF RW ELLPMSPVEGCPTVF
Sbjct: 1   MFGQSMDSARDAAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVF 60

Query: 65  QIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGS 124
           Q+I+++PPGYHQYKF VDGEWRHDEHQP++  EYGIVNTVLLAT+PN+M  +   + SG+
Sbjct: 61  QVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVLPPDVASGN 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           +MDVDN+AF+R+ +++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVA
Sbjct: 121 SMDVDNDAFRRMARLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 180

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LD+DLPVKQAFHIL+EQ     G+ MAPLWDF K +FVGVLSASDFILILRELGNHGSNL
Sbjct: 181 LDVDLPVKQAFHILHEQ-----GVFMAPLWDFCKGQFVGVLSASDFILILRELGNHGSNL 235

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWKEGK+YLNRQ + HG AF R  ++AGP DNLKD+A KIL  EV+TVP
Sbjct: 236 TEEELETHTISAWKEGKSYLNRQNNGHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVP 295

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHSSS+D SFPQLLH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE 
Sbjct: 296 IIHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGES 355

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           NRRPLAMLRP+ASL++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AY HIN
Sbjct: 356 NRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHIN 415

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L EMT+HQALQLGQD+YSPYELRSQRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKR
Sbjct: 416 LDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 475

Query: 485 VEGIVSLSDIFKFLLG 500
           VEGIVSLSDIFKF +G
Sbjct: 476 VEGIVSLSDIFKFFIG 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/495 (78%), Positives = 441/495 (89%), Gaps = 5/495 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   MD+AR    V  TVLIPMRFVWPYGGRSVFLSGSF RW ELLPMSPVEGCPTVFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I+++PPGYHQYKF VDGEWRHDEHQP++  +YGIVNTV LAT+PN++  +   + SG++
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLATDPNYIPVLPPDVASGNS 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVDN+AF+R+V+++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVAL
Sbjct: 121 MDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVAL 180

Query: 186 DIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 245
           D+DLPVKQAFHIL+EQ     GI MAPLWDF K +FVGVLSA DFILILRELGNHGSNLT
Sbjct: 181 DVDLPVKQAFHILHEQ-----GIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLT 235

Query: 246 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 305
           EEELETHTISAWKEGK+YLNRQ + HG  F R  ++AGP DNLKD+A KIL  EV+TVPI
Sbjct: 236 EEELETHTISAWKEGKSYLNRQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPI 295

Query: 306 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 365
           IHSSS+D SFPQLLH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE N
Sbjct: 296 IHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESN 355

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
           R+PLAMLRP+ASL++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AYAHINL
Sbjct: 356 RQPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINL 415

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
            EMT+HQALQLGQD+YSPYELRSQRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKRV
Sbjct: 416 DEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 475

Query: 486 EGIVSLSDIFKFLLG 500
           EGIVSL DIFKF +G
Sbjct: 476 EGIVSLRDIFKFFIG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450664|ref|XP_004143082.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus] gi|449523153|ref|XP_004168589.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus]

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/496 (78%), Positives = 432/496 (87%), Gaps = 6/496 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   MD  R+ A    T+LIPMRFVWPYGGRSVFLSGSF RWSEL+PM+P+EGCPTVFQ
Sbjct: 1   MFASSMDTVRDTARTAGTLLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
            I+S+ PGYHQYKF VDGEWRHDE Q  +S EYG+VNTVLLATEP++   + N  M  GS
Sbjct: 61  AIYSLTPGYHQYKFFVDGEWRHDEQQTCVSGEYGVVNTVLLATEPSYAAPLANPEMTPGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           +MDVDNEAF+RLV+I+DG L+EA   ISEADLQ SRHR+S FLSTHT YELLPESGKVVA
Sbjct: 121 SMDVDNEAFRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVVA 180

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LDIDLPVKQAFHIL+EQ     GI  APLWDFSK +FVGVLSASDFILIL+ELG  GSNL
Sbjct: 181 LDIDLPVKQAFHILHEQ-----GIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNL 235

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWKEGKAYLN ++D  G+   R  ++A P DNLKDVA KIL N+VATVP
Sbjct: 236 TEEELETHTISAWKEGKAYLNGRVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVP 295

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHSS++DGSFPQLLH+ASLSGILKC+CRYFRHCSS LP+L+LPI AIPVGTWVPKIGE 
Sbjct: 296 IIHSSAEDGSFPQLLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGES 355

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           N RPLAMLRPSASLS+ALNLL+QAQVSSIPIVDDNDSLLD+YCRSDITALAKD+AY HIN
Sbjct: 356 NGRPLAMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHIN 415

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L EMTIHQALQLGQDS+S YE RSQRCQMCL SD+LHKVM+RLANPGVRRLVIVEAGSKR
Sbjct: 416 LDEMTIHQALQLGQDSFSLYEPRSQRCQMCLRSDSLHKVMDRLANPGVRRLVIVEAGSKR 475

Query: 485 VEGIVSLSDIFKFLLG 500
           VEGI+SLSDIFKFLLG
Sbjct: 476 VEGIISLSDIFKFLLG 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432326|ref|XP_002274373.1| PREDICTED: sucrose nonfermenting 4-like protein [Vitis vinifera] gi|297736884|emb|CBI26085.3| unnamed protein product [Vitis vinifera]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/496 (78%), Positives = 432/496 (87%), Gaps = 6/496 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           M +PGMD+ARE   V  TVLIPM FVW YGGRSV+LSGSF  W+ L  MSPVEGCPTVFQ
Sbjct: 1   MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGS 124
           +I S+ PGYHQYKF VDGEWRHDE+QPFIS  YGIVNTVLLA E +++   I+  +PS +
Sbjct: 61  VICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLARESDYIPPTISPAVPSLT 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMDVDNEAFQ+LV+ISDGS  EA  RI E DL+VSRHRVS+FLSTHT YELLPESGKV+ 
Sbjct: 121 NMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVIT 180

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LD+DLPVKQAFHILYEQ     GIS+APLWD+ K RFVGVLSA DFILILRELGNHGSNL
Sbjct: 181 LDVDLPVKQAFHILYEQ-----GISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNL 235

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWKEGK YLNRQID +G+AF R L++AGP DNLKDVA KIL NEVATVP
Sbjct: 236 TEEELETHTISAWKEGKGYLNRQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVP 295

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHSSS+DGSFPQLLH+ASLSGILKC+CRYFRH S+SLP+L+LPI AIPVGTWV +IGE 
Sbjct: 296 IIHSSSEDGSFPQLLHLASLSGILKCICRYFRHSSNSLPVLQLPIFAIPVGTWVSEIGEA 355

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           N+RPLA L PSASLS+AL+LLVQAQVSSIPIVDDNDSLLDIY RSDITALAK++ YAHIN
Sbjct: 356 NQRPLAKLHPSASLSSALSLLVQAQVSSIPIVDDNDSLLDIYSRSDITALAKNRVYAHIN 415

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L +MTIHQALQLGQD YSPYE  SQRCQMCL +D LH+VM+RLANPGVRRLVIVEAGS+R
Sbjct: 416 LDDMTIHQALQLGQDPYSPYEFNSQRCQMCLRTDPLHEVMDRLANPGVRRLVIVEAGSRR 475

Query: 485 VEGIVSLSDIFKFLLG 500
           VEGIVSL DIFKFLLG
Sbjct: 476 VEGIVSLRDIFKFLLG 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123196|ref|XP_002330362.1| predicted protein [Populus trichocarpa] gi|222871566|gb|EEF08697.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/473 (78%), Positives = 413/473 (87%), Gaps = 9/473 (1%)

Query: 28  MRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87
           MRFVW +GGR+VFLSGSFNRW EL+PMSPVEGCP VFQ I+ I PG HQYKFCVDGEWRH
Sbjct: 1   MRFVWTHGGRNVFLSGSFNRWGELIPMSPVEGCPNVFQAIYDITPGNHQYKFCVDGEWRH 60

Query: 88  DEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEA 147
           DE QP  ++EYGIVN V    E N+    N  M  GS+M++DNEAF RLV +SDG+LT  
Sbjct: 61  DELQPHSTTEYGIVNIVQFNMEANY----NPEMIPGSSMELDNEAFTRLVSVSDGTLTGG 116

Query: 148 AERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQG 207
              ISEADLQVSRHR+SVFL+THTAYELLP+SGKVVALD+DLPVKQAFHIL+EQ     G
Sbjct: 117 VPSISEADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAFHILFEQ-----G 171

Query: 208 ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQ 267
           ISMAPLWDFS+ +FVGVLSA DFILILRELGN+GSNLTEEEL+TH+ISAWKEGKAYL RQ
Sbjct: 172 ISMAPLWDFSRGQFVGVLSALDFILILRELGNNGSNLTEEELDTHSISAWKEGKAYLERQ 231

Query: 268 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI 327
           ID H    PR L++AGP DNLK+VA +IL  +VATVP+IHSSS+D SFPQLLH+ASLSGI
Sbjct: 232 IDGHVWPLPRHLIHAGPYDNLKEVALRILQYKVATVPVIHSSSEDSSFPQLLHLASLSGI 291

Query: 328 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ 387
           LKC+CRYFRHCSS+LPIL+LPI AIPVG+WVP IGEP+  PL MLRPSASLS+ALNLL+Q
Sbjct: 292 LKCICRYFRHCSSTLPILQLPIGAIPVGSWVPSIGEPSGCPLVMLRPSASLSSALNLLIQ 351

Query: 388 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447
           AQVSSIPIVD+NDSL+DIYCRSDITALAKDK Y HINL+EMTI+QALQLGQD+YS +ELR
Sbjct: 352 AQVSSIPIVDENDSLVDIYCRSDITALAKDKIYTHINLNEMTINQALQLGQDAYSSHELR 411

Query: 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           SQRCQMCL SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIV+L DIFKFLLG
Sbjct: 412 SQRCQMCLRSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVTLRDIFKFLLG 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/497 (74%), Positives = 419/497 (84%), Gaps = 11/497 (2%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF  G ++  E +++P TVLIP RFVWPYGGR V LSGSF RWSE +PMSP+EGCPTVFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
           +IWS+ PGYHQYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GS
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMD+DN+ F R    S G+L E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+A
Sbjct: 121 NMDLDNDPFPRG---SSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIA 177

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LD++LPVKQAFH LYEQ     GI +APLWDF K +FVGVLSA DFILILRELGNHGSNL
Sbjct: 178 LDVNLPVKQAFHTLYEQ-----GIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNL 232

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWKEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVP
Sbjct: 233 TEEELETHTISAWKEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVP 291

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHS+SQDGSFPQLLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE 
Sbjct: 292 IIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGES 351

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           N +P AMLRP+ASL AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+
Sbjct: 352 NGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIH 411

Query: 425 LSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           L  M+IHQALQLGQD+ SPY   S QRCQMCL SD LHKVMERLANPGVRRLVIVEAGSK
Sbjct: 412 LDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 471

Query: 484 RVEGIVSLSDIFKFLLG 500
           RVEG++SLSD+F+FLLG
Sbjct: 472 RVEGVISLSDVFRFLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563906|ref|XP_003550198.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/496 (73%), Positives = 418/496 (84%), Gaps = 18/496 (3%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF+P MD+AR+ + V  TVLIPMRFVWPYGGRSV+LSGSF RWSELL MSPVEGCPTVFQ
Sbjct: 1   MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I S+ PG+HQYKF VDGEWRHD+ QP  S EYGIVNTV LAT+PN +  +   + SGSN
Sbjct: 61  VIHSLVPGHHQYKFFVDGEWRHDDLQPCESGEYGIVNTVSLATDPNILPVLTPDIVSGSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAA-ERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           MDVDNEAF+R+V+++DG+L+     RIS+ D+Q SR R+S FLS  TAYELLPESGKVV 
Sbjct: 121 MDVDNEAFRRMVRLTDGTLSNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVT 180

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LD+DLPVKQAFHIL+EQ     GI +APLWD  K +FVGVLSA DFILILRELGNHGSNL
Sbjct: 181 LDVDLPVKQAFHILHEQ-----GIPIAPLWDICKGQFVGVLSALDFILILRELGNHGSNL 235

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWK GK             F +  + AGP DNLK++A KIL + ++TVP
Sbjct: 236 TEEELETHTISAWKGGK----------WTGFTQCFIRAGPYDNLKEIAVKILQHGISTVP 285

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHS  +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE 
Sbjct: 286 IIHS--EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGES 343

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           NRRPLAMLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HIN
Sbjct: 344 NRRPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHIN 403

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L EMT+HQALQLGQDSY+ YEL  QRCQMCL +D+LHKVMERLA+PGVRRLVIVEAGSKR
Sbjct: 404 LDEMTVHQALQLGQDSYNTYELSCQRCQMCLRTDSLHKVMERLASPGVRRLVIVEAGSKR 463

Query: 485 VEGIVSLSDIFKFLLG 500
           VEGI++LSDIF F LG
Sbjct: 464 VEGIIALSDIFNFFLG 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519984|ref|XP_003528648.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/495 (74%), Positives = 416/495 (84%), Gaps = 18/495 (3%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF+P MD+AR+ + V  TVLIPMRFVWPYGGRSV+LSGSF RWSELL MSPVEGCPTVFQ
Sbjct: 1   MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I S+ PG+HQYKF VDGEWRHD+HQP +S EYGIVNTVLLAT+PN +  +   + SGSN
Sbjct: 61  VIHSLIPGHHQYKFFVDGEWRHDDHQPCVSGEYGIVNTVLLATDPNIVPVLTPEIVSGSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVDNEAF R   +++  L     RIS+ D+Q SR R+S FLS  TAYELLPESGKVV L
Sbjct: 121 MDVDNEAF-RYSTLNNVLL----PRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVTL 175

Query: 186 DIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 245
           D+DLPVKQAFHIL+EQ     GI +APLWD  K +FVGVLSA DFILI+RELGNHGSNLT
Sbjct: 176 DVDLPVKQAFHILHEQ-----GIPVAPLWDICKGQFVGVLSALDFILIIRELGNHGSNLT 230

Query: 246 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 305
           EEELETHTISAWK GK           + F R  V  GP DNLK++A KIL N ++TVPI
Sbjct: 231 EEELETHTISAWKGGKW------TGFTQCFIRVSVLCGPYDNLKEIAVKILQNGISTVPI 284

Query: 306 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 365
           IHS  +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE N
Sbjct: 285 IHS--EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESN 342

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
           RRPLAMLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HINL
Sbjct: 343 RRPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINL 402

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
            EMT+HQALQLGQDSY+ YELRSQRCQMCL +D+LHKVMERLANPGVRRLVIVEAGSKRV
Sbjct: 403 DEMTVHQALQLGQDSYNTYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRV 462

Query: 486 EGIVSLSDIFKFLLG 500
           EGI++LSDIF F LG
Sbjct: 463 EGIIALSDIFNFFLG 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/497 (74%), Positives = 415/497 (83%), Gaps = 17/497 (3%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF  G ++  E +++P TVLIP RFVWPYGGR V LSGSF RWSE +PMSP+EGCPTVFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
           +IWS+ PGYHQYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GS
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMD+DN+ F R          E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+A
Sbjct: 121 NMDLDNDPFPR---------GEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIA 171

Query: 185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
           LD++LPVKQAFH LYEQ     GI +APLWDF K +FVGVLSA DFILILRELGNHGSNL
Sbjct: 172 LDVNLPVKQAFHTLYEQ-----GIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNL 226

Query: 245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
           TEEELETHTISAWKEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVP
Sbjct: 227 TEEELETHTISAWKEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVP 285

Query: 305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
           IIHS+SQDGSFPQLLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE 
Sbjct: 286 IIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGES 345

Query: 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
           N +P AMLRP+ASL AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+
Sbjct: 346 NGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIH 405

Query: 425 LSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           L  M+IHQALQLGQD+ SPY   S QRCQMCL SD LHKVMERLANPGVRRLVIVEAGSK
Sbjct: 406 LDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 465

Query: 484 RVEGIVSLSDIFKFLLG 500
           RVEG++SLSD+F+FLLG
Sbjct: 466 RVEGVISLSDVFRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107351|ref|XP_002314455.1| predicted protein [Populus trichocarpa] gi|222863495|gb|EEF00626.1| predicted protein [Populus trichocarpa]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/473 (75%), Positives = 405/473 (85%), Gaps = 26/473 (5%)

Query: 28  MRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87
           MRFVW +GGR+VFLSGSFNRW EL+PMSPVEGCP VFQ I+ I  G HQYKF VDGEWRH
Sbjct: 1   MRFVWTHGGRNVFLSGSFNRWGELIPMSPVEGCPNVFQAIYGITHGNHQYKFLVDGEWRH 60

Query: 88  DEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEA 147
           DE QP+ ++EYGI+NT+    E NF    N  M  GS+M++DNEAF RL           
Sbjct: 61  DELQPYTTTEYGILNTIQFNMEANF----NPEMIPGSSMELDNEAFTRL----------- 105

Query: 148 AERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQG 207
                 ADLQVSRHR+SVFL+THTAYELLP+SGKVVALD+DLPVKQAFHIL+EQ     G
Sbjct: 106 ------ADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAFHILFEQ-----G 154

Query: 208 ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQ 267
           I MAPLWDFS+ +FVGVLSA DFILILRELGN+GS+ TEEEL+THTISAWKEGK+YLNRQ
Sbjct: 155 IPMAPLWDFSRGQFVGVLSALDFILILRELGNNGSDFTEEELDTHTISAWKEGKSYLNRQ 214

Query: 268 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI 327
           ID H +A PR L++AGP DNLK+VA +IL NEVATVPIIHSSS+DGSFPQLLH+ASLSGI
Sbjct: 215 IDGHVRALPRHLIHAGPYDNLKEVALRILQNEVATVPIIHSSSEDGSFPQLLHLASLSGI 274

Query: 328 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ 387
           LKC+CRYFRHCS ++P+L+LPI AIPVG+WVP IGEP+ RPLAMLRPSASLS+ALNLL+Q
Sbjct: 275 LKCICRYFRHCSGTVPMLQLPIGAIPVGSWVPSIGEPSGRPLAMLRPSASLSSALNLLIQ 334

Query: 388 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447
           AQVSSIPIVD+NDSL+DIYCRSDITALAKDK Y HINL+EMTI+QALQLGQD YS Y+LR
Sbjct: 335 AQVSSIPIVDENDSLIDIYCRSDITALAKDKIYTHINLNEMTINQALQLGQDVYSSYDLR 394

Query: 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           SQRCQMCL SDTLHKVMERLANPGVRRLVIVEAGS RVEGIV+LSDIF+FLLG
Sbjct: 395 SQRCQMCLRSDTLHKVMERLANPGVRRLVIVEAGSNRVEGIVTLSDIFRFLLG 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.968	0.993	0.665	1.2e-175
ZFIN|ZDB-GENE-040426-2188	330	prkag1 "protein kinase, AMP-ac	0.248	0.375	0.380	4e-27
FB|FBgn0264357	1400	SNF4Agamma "SNF4/AMP-activated	0.282	0.100	0.333	2.7e-26
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.248	0.380	0.345	2.5e-25
UNIPROTKB|Q8N7V9	340	PRKAG1 "cDNA FLJ40287 fis, clo	0.304	0.447	0.340	3.7e-25
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.39	0.337	0.297	8.4e-25
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.268	0.237	0.339	1.7e-24
MGI|MGI:1891343	489	Prkag3 "protein kinase, AMP-ac	0.274	0.280	0.327	2.4e-24
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.256	0.259	0.338	3.2e-24
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.248	0.234	0.345	3.6e-24

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 331/497 (66%), Positives = 389/497 (78%)

Query:     6 MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
             MF   +D++R  ++    +L P RFVWPYGGR VFLSGSF RW+E +PMSP+EGCPTVFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    66 IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGS 124
             +I ++ PGYHQYKF VDGEWRHDEHQPF+S   G+VNT+ + T P+ +  G +      S
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFI-TGPDMVPAGFSPETLGRS 119

Query:   125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
             NMDVD + F R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+A
Sbjct:   120 NMDVD-DVFLRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIA 174

Query:   185 LDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 244
             LD++LPVKQAFHILYEQ     GI +APLWDF K +FVGVL   DFILILRELG HGSNL
Sbjct:   175 LDVNLPVKQAFHILYEQ-----GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNL 229

Query:   245 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 304
             TEEELETHTI+AWKEGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP
Sbjct:   230 TEEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVP 289

Query:   305 IIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364
             +I+SS QDGS+PQLLH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE 
Sbjct:   290 VIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGES 349

Query:   365 NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 424
             + +PLA LRP                 SIP+VDDNDSL+DIY RSDITALAKDKAYA I+
Sbjct:   350 SSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIH 409

Query:   425 LSEMTIHQALQLGQDSYSPYEL-RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
             L +MT+HQALQLGQD+  PY +   QRC MCL SD+L KVMERLANPGVRRLVIVEAGSK
Sbjct:   410 LDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSK 469

Query:   484 RVEGIVSLSDIFKFLLG 500
             RVEGI+SLSD+F+FLLG
Sbjct:   470 RVEGIISLSDVFQFLLG 486

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

ZFIN|ZDB-GENE-040426-2188 prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 54/142 (38%), Positives = 75/142 (52%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
             F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG+L
Sbjct:    30 FMKSHRCYDLVPTSSKLVVFDTSLQVKKAFFALVSN-----GVRAAPLWDSKKQCFVGML 84

Query:   226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
             + +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   P
Sbjct:    85 TITDFINILHRY--YKSPLVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVSISP 132

Query:   285 NDNLKDVARKILHNEVATVPII 306
             N +L D    +L +++  +P+I
Sbjct:   133 NASLYDAVSSLLKHKIHRLPVI 154

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

FB|FBgn0264357 SNF4Agamma "SNF4/AMP-activated protein kinase gamma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
 Identities = 53/159 (33%), Positives = 88/159 (55%)

Query:   149 ERISEADLQVSRHRVSV-FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQG 207
             E+++ +DL+    ++ V F   H  Y+L+P S K+V  D  L VK+AF+ L        G
Sbjct:   909 EKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALV-----YNG 963

Query:   208 ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQ 267
             +  APLWD  K +FVG+L+ +DFI IL ++     N + E+LE H +  W+   + L+ Q
Sbjct:   964 VRAAPLWDSEKQQFVGMLTITDFIKIL-QMYYKSPNASMEQLEEHKLDTWR---SVLHNQ 1019

Query:   268 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 306
             +         PLV  GP+ +L D  + ++H+ +  +P+I
Sbjct:  1020 V--------MPLVSIGPDASLYDAIKILIHSRIHRLPVI 1050

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS;NAS

GO:0042632 "cholesterol homeostasis" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030730 "sequestering of triglyceride" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0042595 "behavioral response to starvation" evidence=IMP

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 49/142 (34%), Positives = 75/142 (52%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
             F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW+  K  FVG+L
Sbjct:    21 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLWESKKQSFVGML 75

Query:   226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
             + +DFI IL     + S + +  ELE H I  W+E   YL        + F +PLV   P
Sbjct:    76 TITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KPLVNISP 123

Query:   285 NDNLKDVARKILHNEVATVPII 306
             + +L D    ++ N++  +P+I
Sbjct:   124 DASLFDAVYSLIKNKIHRLPVI 145

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

UNIPROTKB|Q8N7V9 PRKAG1 "cDNA FLJ40287 fis, clone TESTI2027909, highly similar to 5'-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
 Identities = 62/182 (34%), Positives = 86/182 (47%)

Query:   140 SDGSLTEAAERISEADLQVSRHRV-SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 198
             SD S   A E     +   S + V + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct:     7 SDSS--PAVENEHPQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 64

Query:   199 YEQSSRLQGISMAPLWDFSKARFV---------GVLSASDFILILRELGNHGSNLTE-EE 248
                     G+  APLWD  K  FV         G+L+ +DFI IL     + S L +  E
Sbjct:    65 VTN-----GVRAAPLWDSKKQSFVVLRALSCPLGMLTITDFINILHRY--YKSALVQIYE 117

Query:   249 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 308
             LE H I  W+E   YL    DS      +PLV   PN +L D    ++ N++  +P+I  
Sbjct:   118 LEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDP 167

Query:   309 SS 310
              S
Sbjct:   168 ES 169

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
 Identities = 66/222 (29%), Positives = 104/222 (46%)

Query:   117 NQGMPSGSNMDVDNEAFQRLVQISDG----SLTEAAERI-SEADLQVSRHR-VSV-FLST 169
             N    S SN +  N +   +  +S+G    +L    ++I SE +  +   + V V FL  
Sbjct:   216 NNNNNSNSNNNYINHS--SISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKG 273

Query:   170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASD 229
             HT Y+++P SGKVV LD  L VK AF+ L E      GI  APLW+  +  F G+++ SD
Sbjct:   274 HTCYDVIPISGKVVVLDTKLAVKSAFYALEEN-----GIKSAPLWNSEQHDFTGMITVSD 328

Query:   230 FI-LILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 287
             FI ++L       SN   +++  H I   W+E    + R         P  L+   P  N
Sbjct:   329 FIDILLYYYKKPKSNNIFQDMGIHRIETFWRE--ISVER---------PSSLISTEPETN 377

Query:   288 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 329
             L D A  +L  ++  +P++     +     L H   L+ ++K
Sbjct:   378 LYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMK 419

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 52/153 (33%), Positives = 80/153 (52%)

Query:   156 LQVSRHRVSV-FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLW 214
             L+ S   + V F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW
Sbjct:   249 LEESESDIYVRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLW 303

Query:   215 DFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGK 273
             +  K  FVG+L+ +DFI IL     + S + +  ELE H I  W+E   YL        +
Sbjct:   304 ESKKQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------E 352

Query:   274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPII 306
              F +PLV   P+ +L D    ++ N++  +P+I
Sbjct:   353 TF-KPLVNISPDASLFDAVYSLIKNKIHRLPVI 384

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1891343 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catatlytic subunit" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 52/159 (32%), Positives = 80/159 (50%)

Query:   149 ERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGI 208
             + + +   QV  H    F+  HT Y+ +  S K+V  D  L +K+AF  +        G+
Sbjct:   174 DELQKPGAQVYMH----FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVAN-----GV 224

Query:   209 SMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQ 267
               APLWD  K  FVG+L+ +DFIL+L     + S L +  E+E H I  W+E   YL   
Sbjct:   225 RAAPLWDSKKQSFVGMLTITDFILVLHRY--YRSPLVQIYEIEEHKIETWRE--IYLQ-- 278

Query:   268 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 306
                 G  F +PLV   PND+L +    ++ N +  +P++
Sbjct:   279 ----G-CF-KPLVSISPNDSLFEAVYALIKNRIHRLPVL 311

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 48/142 (33%), Positives = 74/142 (52%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
             F+  HT Y+ +  S K+V  D  L +K+AF  +        G+  APLWD  K  FVG+L
Sbjct:   187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVAN-----GVRAAPLWDSKKQSFVGML 241

Query:   226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
             + +DFIL+L     + S L +  E+E H I  W+   A +  Q    G  F +PLV   P
Sbjct:   242 TITDFILVLHRY--YRSPLVQIYEIEEHKIETWRGFSAEIYLQ----G-CF-KPLVSISP 293

Query:   285 NDNLKDVARKILHNEVATVPII 306
             ND+L +    ++ N +  +P++
Sbjct:   294 NDSLFEAVYALIKNRIHRLPVL 315

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
 Identities = 49/142 (34%), Positives = 75/142 (52%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVL 225
             F+ +H  Y+++P S K+V  D  L VK+AF  L        G+  APLW+  K  FVG+L
Sbjct:   223 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVAN-----GVRAAPLWESKKQSFVGML 277

Query:   226 SASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGP 284
             + +DFI IL     + S + +  ELE H I  W+E   YL        + F +PLV   P
Sbjct:   278 TITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KPLVNISP 325

Query:   285 NDNLKDVARKILHNEVATVPII 306
             + +L D    ++ N++  +P+I
Sbjct:   326 DASLFDAVYSLIKNKIHRLPVI 347

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.6875	0.97	0.9958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019790001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (491 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	500
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	2e-36
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	8e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	5e-23
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	7e-11
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-07
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	4e-07
cd02688	82	cd02688, E_set, Early set domain associated with t	7e-07
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	2e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-06
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-05
pfam00571	57	pfam00571, CBS, CBS domain	6e-05
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-04
pfam00571	57	pfam00571, CBS, CBS domain	2e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	3e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-04
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	6e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	8e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.001
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.001
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.001
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.002
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.002
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  130 bits (329), Expect = 2e-36
 Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 11/131 (8%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
           + +A  RP   L   L++LV+ +VS++PIVD+N  ++D+Y R D+  LAK+ AY   N  
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY---NNL 57

Query: 427 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 486
           ++T+ +AL+     +          + C P D L  + + +    V RLV+V+   KRVE
Sbjct: 58  DLTVGEALERRSQDFE-------GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVE 109

Query: 487 GIVSLSDIFKF 497
           GI+SLSDI +F
Sbjct: 110 GIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  103 bits (258), Expect = 8e-27
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 27  PMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85
           P+ F WP  GG+ V+++GSF+ W + +P+         F     +PPG ++YKF VDGEW
Sbjct: 1   PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGD--GEFSATVELPPGRYEYKFIVDGEW 58

Query: 86  RHDEHQPFISSEYGIVNTVL 105
            HD   P ++ E+G +N VL
Sbjct: 59  VHDPDLPTVTDEFGNLNNVL 78

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 93.1 bits (232), Expect = 5e-23
 Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 48/146 (32%)

Query: 180 GKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGN 239
            K+V  D  LPVK+AF+ L E      GI  APLWD  K +FVG+L+ +DFILILR    
Sbjct: 1   SKLVVFDTKLPVKKAFNALVEN-----GIRSAPLWDSRKQQFVGMLTITDFILILR---- 51

Query: 240 HGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE 299
                                                  LV   P  +L D A  +L N+
Sbjct: 52  ---------------------------------------LVSIHPERSLFDAALLLLKNK 72

Query: 300 VATVPIIHSSSQDGSFPQLLHIASLS 325
           +  +P+I  S+  G +          
Sbjct: 73  IHRLPVIDPSTGTGLYILTSRRILKF 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 425
           R +  + P  +++ AL L+++  +S +P+VDD+  L+ I    D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
            ++     +                     P  +L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVV------------------TVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 486 EGIVSLSDIFKF 497
            GIV+ SDI + 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 30/134 (22%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL------DIYCRSDITALAKDKAY 420
           R +  + P  ++  A  L+ +  V ++P+ + ND L+      DI  R    A+A+ +  
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVR----AVAEGRDP 55

Query: 421 AHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 480
               + ++     +                       D + +    +    VRRL +V+ 
Sbjct: 56  DTTTVGDVMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD- 96

Query: 481 GSKRVEGIVSLSDI 494
              R+ GIVSL D+
Sbjct: 97  DDGRLVGIVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 381 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 440
           A  L+ +  +S +P+VD+   L+     SD+  L        +  +      + +     
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSD 74

Query: 441 YSPYELRSQRCQM-CLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497
                    R  + C PS TL +V+ +L    V R+ +V+   K   G+++L+DI   
Sbjct: 75  GVK-----SRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 31 VWPYGGRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHD 88
          ++  G +SV+L GSFN W +   LPM+   G   V+     +P G ++YK+ +DG     
Sbjct: 6  IFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDGGKNVL 63

Query: 89 EH 90
           +
Sbjct: 64 PY 65

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 26  IPMRFVWP--YGGRSVFLSGSFNRWS-ELLPMSPVEGCPTVFQIIWSIPPGY-HQYKFCV 81
             + F  P   G  SV L G FN W  +  PM  ++     F     +P G  +Q+++ +
Sbjct: 1   CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKN--GTFSATLDLPAGREYQFRYLI 58

Query: 82  DGE-WRHDEHQPFI-SSEYGIVNTVL 105
           DGE W +D        + +G  N+V+
Sbjct: 59  DGERWVNDPEADAYAPNGFGEENSVV 84

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 20/124 (16%)

Query: 374 PSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 433
              ++   L L+   +    P+VDD   L+ I   +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 434 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSD 493
                                 P +TL   ++R+A   + RL +V+  S R+ GIVS SD
Sbjct: 66  PVTA-----------------SPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 494 IFKF 497
           + + 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 20/131 (15%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
            + +  ++P  S+  AL L+ +  VS++P+VDD   L+ I    DI      +A A    
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDI-----LRALAAGGK 59

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLA-NPGVRRLVIVEAGSKR 484
             + +              E+ ++      P   L + +E +     +RRL +V+    +
Sbjct: 60  RLLPV-------------KEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGK 106

Query: 485 VEGIVSLSDIF 495
           + GI++LSDI 
Sbjct: 107 LVGIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 20/126 (15%)

Query: 373 RPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIH 431
           RP A+++ A  L+ +  + ++ +VDD   L+ I+   DI   +A   A    +  +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA----SALDTPVS 62

Query: 432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 491
           + +             ++      P DT+ + M  +     R L +V+ G  ++ GIVS+
Sbjct: 63  EIM-------------TRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 492 SDIFKF 497
            D+ K 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411
            +  + P  +L  AL LL +  +  +P+VD+   L+ I  R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 25/135 (18%)

Query: 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 336
           R +V   P+D + +  R +L + ++ +P++     DG   +L+ I +   +L+       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLR------- 47

Query: 337 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 396
                         A      +  +G+   R +  + P  SL  A  L+++  +  +P+V
Sbjct: 48  ------------ALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 397 DDNDSLLDIYCRSDI 411
           DD   L+ I  RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 31/135 (22%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN- 424
           +PL  L P+A+L  A  L     +   P+VDD   L+ I   SDI  A+A+    A +  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVKD 59

Query: 425 -LSE--MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 481
            +++  +TI +  QL                     D +  + +      V RL++ +  
Sbjct: 60  VMTKDVITIDEDEQL--------------------YDAIRLMNKH----NVGRLIVTDDE 95

Query: 482 SKRVEGIVSLSDIFK 496
            + V GI++ +DI +
Sbjct: 96  GRPV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 26/134 (19%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 424
           RP     P  ++  A  L+ + +VSS+ +V D+  L+ I    D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDP-DTP 58

Query: 425 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           +SE MT    + +  D+                 + L  ++ER    G+  L +V+ G  
Sbjct: 59  VSEVMT-APPITIPPDATV--------------FEALLLMLER----GIHHLPVVDDG-- 97

Query: 484 RVEGIVSLSDIFKF 497
           R+ G++S +D+ + 
Sbjct: 98  RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 25/121 (20%)

Query: 376 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 435
            +    L LL + +VS +P+V  +  L+ I  R D+            N  E  +  AL 
Sbjct: 10  GTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL----------RNPEEEQL--ALL 57

Query: 436 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 495
           + +D   P  +         P D + +  + +    +RR+ +V+    ++ GIV+++DI 
Sbjct: 58  MTRD---PPTVS--------PDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIV 104

Query: 496 K 496
           +
Sbjct: 105 R 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411
              +  + P  SL  AL L+ +  +S +P+VD++  L+ I    D+
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 277 RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 335
            P+V    +D+L D A +++  + +  +P++   ++DG   +L+ + +   +L+      
Sbjct: 1   SPVVTLSEDDSLAD-AEELMREHRIRHLPVV---NEDG---KLVGLLTQRDLLRAALSSL 53

Query: 336 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 395
                     +  +   PV   +       +  +  + P   L  A  ++V+ ++  +P+
Sbjct: 54  SDNGEESLTKERDV---PVAEVM-------KTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 396 VDDNDSLLDIYCRSDI 411
           VDD  +L+ I  RSD 
Sbjct: 104 VDDKGTLVGIITRSDF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 456 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           P  +L + +E +   G+ RL +V     ++ GIV+L D+ + LL 
Sbjct: 14  PDTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 456 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
            + +L + +E L + G+ R+ + E  S  V GI+S   + +FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 181 KVVALDIDLPVKQAFHILYEQS-SRLQGISMAPLWDFSKARFVGVLSASDFILILRELGN 239
            VV +    P+ +A  I+      RL      P+ D    + VG+++A+D   IL+ LG 
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRL------PVVDEGTGKLVGIITATD---ILKYLGG 52

Query: 240 HGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE 299
                  +            G   +N  + S      R ++   P+D++KD A  +L   
Sbjct: 53  GEKFNKIKT---------GNGLEAINEPVRSIMT---RNVITITPDDSIKDAAELMLEKR 100

Query: 300 VATVPII 306
           V  +P++
Sbjct: 101 VGGLPVV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)

Query: 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY---CRSDI--TALAKDKAYAHI 423
           +  +   A+++ AL L+ +  VSS+ +    +S  D Y      DI    +A+ +    +
Sbjct: 3   VVTIDGLATVAEALQLMKEHGVSSLVVEKRRES--DAYGIVTMRDILKKVVAEGRDPDRV 60

Query: 424 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           N+ E+     +     S SP        + C       ++MER     +RR  +VE    
Sbjct: 61  NVYEIMTKPLI-----SVSP----DMDIKYCA------RLMERT---NIRRAPVVENN-- 100

Query: 484 RVEGIVSLSDIF 495
            + GI+SL+DIF
Sbjct: 101 ELIGIISLTDIF 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTI 430
           +R   S+  A+N+L +  +S +P+VDDN  L  I  R DI     +D+  A         
Sbjct: 6   VREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEK 65

Query: 431 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER-LANPGVRRLVIVEAGSKRVEGIV 489
            + L L       Y+  S       P+D++   ++R L N     +V+      +V GI+
Sbjct: 66  ERMLDL-----PVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGIL 120

Query: 490 SLSDI 494
           +  D+
Sbjct: 121 TKKDV 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411
            R      P  +L  AL  + +  +  +P+VDD+  L+ I  RSD+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 25/151 (16%)

Query: 180 GKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGN 239
            KVV++D D  V  AF ++     R   IS  P+ D  K + +G +SASD   +L    +
Sbjct: 1   SKVVSIDSDERVLDAFKLM-----RKNNISGLPVVD-EKGKLIGNISASDLKGLLLSPDD 54

Query: 240 HGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE 299
                T    E        +G                RPL+   P+  LK+V  K++ N+
Sbjct: 55  LLLYRTITFKELSEKFTDSDGVK-------------SRPLITCTPSSTLKEVITKLVANK 101

Query: 300 VATVPIIHSSSQDGSFPQLLHIASLSGILKC 330
           V  V ++    ++G     + + +L+ I+  
Sbjct: 102 VHRVWVV---DEEGK---PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 35/148 (23%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL----- 414
           K+     + L  +RP  +L  A  L  +  +   P+VDD D ++ I   SDI        
Sbjct: 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGN 231

Query: 415 --AKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGV 472
             AK   Y   N+  +TI++                           ++  +  +    V
Sbjct: 232 LDAKVSDYMRKNV--ITINEDED------------------------IYDAIRLMNKNNV 265

Query: 473 RRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
            RL++ ++  K V GI++ +DI   + G
Sbjct: 266 GRLLVTDSNGKPV-GIITRTDILTRIAG 292

Length = 294

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
             +    P  SL+ A + + + ++SSI +V D+   L I    DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 427 EMTIHQALQLGQDSYSPY-ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV-EAGSKR 484
                  L  G D  +P  E+ S          +L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 485 VEGIVSLSDIFK 496
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 32/126 (25%)

Query: 181 KVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNH 240
            VV +  D  V +A  ++ E      GIS  P+ D    R VG+++  D   +LR L   
Sbjct: 2   DVVTVSPDDTVAEALRLMLEH-----GISGLPVVD-DDGRLVGIVTERD---LLRALAEG 52

Query: 241 GSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEV 300
           G +      +  T                       R +V   P+ +L++ A  +L + +
Sbjct: 53  GLDPLVTVGDVMT-----------------------RDVVTVSPDTSLEEAAELMLEHGI 89

Query: 301 ATVPII 306
             +P++
Sbjct: 90  RRLPVV 95

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 471 GVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           G RRL +V+ G+ ++ GI++ +DI K+L G
Sbjct: 23  GFRRLPVVDEGTGKLVGIITATDILKYLGG 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 374 PSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA-LAKDKAYAHINLSEMTIH 431
           P+  +  A  ++V+     +P+VD+    L+ I   +DI   L   + +  I        
Sbjct: 8   PTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGN--GL 65

Query: 432 QALQLGQDSYSP-YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 490
           +A+        P   + ++      P D++    E +    V  L +V+    ++ GIV+
Sbjct: 66  EAI------NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVT 118

Query: 491 LSDIFKF 497
             D+ K 
Sbjct: 119 ERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 26/132 (19%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 425
           RP+  +   AS+  A  L+++  ++ +P+VD++  L+ I    DI+ A+A+DK     ++
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK----KSV 57

Query: 426 SE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
            + MT                   +      P + +     ++    +  L +V+A   R
Sbjct: 58  EDIMT-------------------RNVITATPDEPIDVAARKMERHNISALPVVDA-ENR 97

Query: 485 VEGIVSLSDIFK 496
           V GI++  DI K
Sbjct: 98  VIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 22/131 (16%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
            P+  +RP A++  A  LL++   +++P+V+    ++ I  R D+     +KA  H  L 
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDV-----EKALRH-GLG 54

Query: 427 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 486
              +          Y   ++ +       P   L +V E +    + R+ +VE G  R+ 
Sbjct: 55  HAPV--------KDYMSTDVVTVP-----PDTPLSEVQELMVEHDIGRVPVVEDG--RLV 99

Query: 487 GIVSLSDIFKF 497
           GIV+ +D+ + 
Sbjct: 100 GIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	500
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.92
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.77
COG2524	294	Predicted transcriptional regulator, contains C-te	99.74
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.69
COG2524	294	Predicted transcriptional regulator, contains C-te	99.63
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.61
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.57
COG3620	187	Predicted transcriptional regulator with C-termina	99.56
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.56
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.55
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.54
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.53
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.52
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.52
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.52
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.49
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.48
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.48
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.46
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.46
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.45
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.45
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.45
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.45
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.45
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.43
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.43
COG3620	187	Predicted transcriptional regulator with C-termina	99.43
COG2905	610	Predicted signal-transduction protein containing c	99.43
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.43
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.43
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.43
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.43
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.43
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.42
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.42
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.42
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.42
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.42
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.42
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.41
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.41
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.41
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.41
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.41
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.41
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.4
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.4
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.4
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.4
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.4
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.39
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.38
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.38
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.38
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.37
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.37
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.37
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.37
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.37
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.36
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.36
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.36
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.35
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.35
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.35
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.35
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.34
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.34
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.34
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.33
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.33
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.32
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.32
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.32
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.31
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.31
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.31
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.31
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.31
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.31
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.31
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.3
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.3
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.3
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.3
COG0517	117	FOG: CBS domain [General function prediction only]	99.29
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.28
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.28
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.28
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.28
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.28
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.27
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.27
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.26
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.26
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.26
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.26
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.26
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.25
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.25
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.25
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.25
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.24
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.24
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.24
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.24
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.24
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.23
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.23
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.23
COG4109	432	Predicted transcriptional regulator containing CBS	99.23
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.23
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.22
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.22
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.22
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.21
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.21
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.21
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.21
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.21
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.2
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.2
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.2
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.2
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.2
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.19
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.19
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.19
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.19
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.18
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.18
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.18
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.18
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.17
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.17
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.17
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.16
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.16
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.16
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.15
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.15
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.14
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.14
COG0517	117	FOG: CBS domain [General function prediction only]	99.13
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.13
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.12
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.12
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.11
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.11
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.11
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.11
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.11
PRK11573	413	hypothetical protein; Provisional	99.1
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.1
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.1
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.09
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.09
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.09
COG2905	610	Predicted signal-transduction protein containing c	99.08
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.07
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.06
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.05
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.04
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.03
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.01
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.99
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.99
COG4109	432	Predicted transcriptional regulator containing CBS	98.96
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.91
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.9
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.87
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.85
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.83
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.8
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.79
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.75
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.74
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.68
PRK11573	413	hypothetical protein; Provisional	98.66
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.65
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.63
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.55
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.51
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.49
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.46
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.45
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.44
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.21
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.15
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.14
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.07
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.9
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.88
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.73
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.73
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.71
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.68
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.67
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.59
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.58
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.56
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.53
PRK12568	730	glycogen branching enzyme; Provisional	97.43
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.43
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.38
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.32
PRK12313	633	glycogen branching enzyme; Provisional	97.29
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.26
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.25
PRK14705	1224	glycogen branching enzyme; Provisional	97.2
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.16
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.12
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.1
PRK14706	639	glycogen branching enzyme; Provisional	97.08
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.05
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.93
PRK05402	726	glycogen branching enzyme; Provisional	96.82
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.79
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.67
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.61
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.57
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.54
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.52
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.5
PRK05402	726	glycogen branching enzyme; Provisional	96.4
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.34
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.29
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.19
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.79
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	95.77
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.29
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	95.08
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	94.9
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	94.33
PLN02960	897	alpha-amylase	94.25
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.88
PLN02316	1036	synthase/transferase	93.73
PLN02950	909	4-alpha-glucanotransferase	92.5
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.38
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.28
PLN02316	1036	synthase/transferase	92.03
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	91.86
PRK03705	658	glycogen debranching enzyme; Provisional	91.35
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	90.64
PLN02950	909	4-alpha-glucanotransferase	90.58
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	89.55
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.58
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	85.48
PLN03244	872	alpha-amylase; Provisional	83.04
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	82.94
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	82.85

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=5.7e-34  Score=288.85  Aligned_cols=303  Identities=31%  Similarity=0.564  Sum_probs=257.9

Q ss_pred             HHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhc
Q 010821          159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELG  238 (500)
Q Consensus       159 ~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~  238 (500)
                      ....++.|++.++||+.+|.+.+++++|..+++++||++|..+     +.+++|+||...++|+|++++.||+.++...+
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~-----~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~  129 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQN-----GVRAAPLWDSKKQQFVGMLTITDFITVLLRYY  129 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhh-----ceeeeccccCccceeEEEEEHHHHHHHHHHhh
Confidence            6678899999999999999999999999999999999999999     99999999999999999999999999999887


Q ss_pred             CCCCCC-ChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCce
Q 010821          239 NHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  317 (500)
Q Consensus       239 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~  317 (500)
                      ..+... ..+.++...+..|++.....       +....++++.+.|..++.+++..+.+++++++||.|  .+.+   .
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~  197 (381)
T KOG1764|consen  130 KSKSSLDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---E  197 (381)
T ss_pred             ccCCcHHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---c
Confidence            642211 23445555555555542221       111344559999999999999999999999999994  5666   7


Q ss_pred             EEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEc
Q 010821          318 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD  397 (500)
Q Consensus       318 liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd  397 (500)
                      +++++|++.|++++..+.+..+ ...++..++.++.+|+|.         .+..+..++++.+|+++|..++++++||||
T Consensus       198 v~~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~  267 (381)
T KOG1764|consen  198 VLYILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD  267 (381)
T ss_pred             eeeehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence            9999999999999998766654 456788999999999996         688999999999999999999999999999


Q ss_pred             CCCcEEEEEeHHHHHHHHHcccccccCccccc-HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEE
Q 010821          398 DNDSLLDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV  476 (500)
Q Consensus       398 ~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~  476 (500)
                      ..|+.+|+++..|+..+...+.|..++   .+ +.+++..+.       .-...+++|.++++|.+++++|..+++||+|
T Consensus       268 ~~g~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~  337 (381)
T KOG1764|consen  268 ENGKKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLW  337 (381)
T ss_pred             CCCceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEE
Confidence            999999999999999999888776654   44 777665433       2234689999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHhh
Q 010821          477 IVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       477 VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      |||+ +|.++|+||++||+.++.
T Consensus       338 VVd~-~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  338 VVDE-DGVLVGVISLSDILSYLV  359 (381)
T ss_pred             EEcC-CCcEEEEeeHHHHHHHHH
Confidence            9995 799999999999999874

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.92  E-value=4.3e-25  Score=174.38  Aligned_cols=79  Identities=42%  Similarity=0.907  Sum_probs=73.4

Q ss_pred             eeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 010821           25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV  104 (500)
Q Consensus        25 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn~  104 (500)
                      .+|++|+|+++|++|+|+|||++|++..||.+..  ++ |++++.||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            3799999999999999999999999878998853  34 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 010821          105 LL  106 (500)
Q Consensus       105 l~  106 (500)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.77  E-value=1.4e-18  Score=138.58  Aligned_cols=77  Identities=34%  Similarity=0.726  Sum_probs=68.8

Q ss_pred             eeEEEEecCC-CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEe-eCCCCC-eeeCCCCCee
Q 010821           26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN  102 (500)
Q Consensus        26 ~~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~-~d~~~~-~~~~~~g~~n  102 (500)
                      +|++|+|..+ +++|+|+|+||+|+. .+|.+.  .+|.|++++.|++|.|+|||+|||.|. +||.++ +..|++|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5899997766 599999999999984 689874  469999999999999999999999998 999998 5889999999


Q ss_pred             eEE
Q 010821          103 TVL  105 (500)
Q Consensus       103 n~l  105 (500)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.74  E-value=2.1e-17  Score=152.63  Aligned_cols=120  Identities=19%  Similarity=0.373  Sum_probs=110.4

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.++++++.+++|+.+|.++|.+++++..||+|++ +++|++|.+|+..+..++.+      +..|+++|     
T Consensus       173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~------~~kV~~~M-----  240 (294)
T COG2524         173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL------DAKVSDYM-----  240 (294)
T ss_pred             hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence            5677899999999999999999999999999999999865 99999999999998887743      57888855     


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                              .+.++++.+++.+.+|++.|..++++||.|+|. +|+++|+||+.|||+.|.+
T Consensus       241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence                    789999999999999999999999999999996 7999999999999998864

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.69  E-value=7.2e-17  Score=157.85  Aligned_cols=90  Identities=36%  Similarity=0.739  Sum_probs=83.9

Q ss_pred             CCceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCe
Q 010821           22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV  101 (500)
Q Consensus        22 ~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~  101 (500)
                      .....|++|+|.++++.|+|+|+|.+|...+++.+..+..|.|+.++.|++|.|+|||+|||+|++|++.|++.|..|+.
T Consensus        76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~  155 (289)
T KOG1616|consen   76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL  155 (289)
T ss_pred             cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence            45678999999999999999999999999999988655556699999999999999999999999999999999999999


Q ss_pred             eeEEEeccCC
Q 010821          102 NTVLLATEPN  111 (500)
Q Consensus       102 nn~l~v~~~~  111 (500)
                      ||++.|.+.+
T Consensus       156 ~N~i~v~~~~  165 (289)
T KOG1616|consen  156 NNILEVQDPD  165 (289)
T ss_pred             ccceEecCcc
Confidence            9999999887

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.63  E-value=1.7e-15  Score=140.06  Aligned_cols=118  Identities=19%  Similarity=0.371  Sum_probs=103.9

Q ss_pred             CCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc
Q 010821          270 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  349 (500)
Q Consensus       270 ~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v  349 (500)
                      ..+..|.++++++.+++|+.+|+++|.+++++.+||++    ++   +++|++|..||.+.+.+.               
T Consensus       173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g---------------  230 (294)
T COG2524         173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG---------------  230 (294)
T ss_pred             hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC---------------
Confidence            34556899999999999999999999999999999993    33   699999999999887642               


Q ss_pred             ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          350 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       350 ~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                            ....+|+++|.++++++..++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..+
T Consensus       231 ------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         231 ------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             ------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence                  222355667999999999999999999999999999999999999999999999999754

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.8e-14  Score=123.40  Aligned_cols=119  Identities=39%  Similarity=0.706  Sum_probs=96.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|++.+...+....   ...++.+.+...       .+|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~~~-------~~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALERR-------SQD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHhhc-------ccC
Confidence            5678999999999999999999999999998999999999999998654432211   123344432111       134


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++||+++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence            567889999999999999999999999999995 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.57  E-value=7.4e-15  Score=138.16  Aligned_cols=127  Identities=20%  Similarity=0.365  Sum_probs=107.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      ...++|+++++++++++++.+|.++|.+++++.+||+|++.+++|+|+.+|+.+-.....+.++.        ++    .
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~  313 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----R  313 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----C
Confidence            45677999999999999999999999999999999999999999999999998754433222221        11    1


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      .+...++|+.++.|+.++++..+.+-++.+.+.|.+||+|+ .|+++||||.+|++.++.
T Consensus       314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~  372 (382)
T COG3448         314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence            12233588999999999999999999999999999999996 799999999999998764

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.56  E-value=3e-14  Score=122.46  Aligned_cols=119  Identities=20%  Similarity=0.413  Sum_probs=100.9

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      +..+|..+++.+.+++++.+++++|.+++++.+||+++ ++++|-||..+|.+...++..   ++....+.++       
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~v-------  135 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVREV-------  135 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHHH-------
Confidence            34559999999999999999999999999999999985 899999999999987654421   2335667764       


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                            |..++++++++.++..+-.++..++  .+.|++  +|+++||||+.||++++.|
T Consensus       136 ------M~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         136 ------MGEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ------hcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence                  5789999999999999888887775  477886  6999999999999998864

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.56  E-value=4.5e-14  Score=119.21  Aligned_cols=109  Identities=8%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.....      +...++.++             |
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~-------------~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND------YETLKVCEV-------------Y   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc------ccccChhhe-------------e
Confidence            367889999999999999989999999999999999999999998742211      112456654             4


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+|+++|.+++.+++||||+ +|+++|+||.+||++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            567889999999999999999999999999995 699999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.4e-13  Score=116.70  Aligned_cols=111  Identities=19%  Similarity=0.354  Sum_probs=95.1

Q ss_pred             ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC
Q 010821          369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS  448 (500)
Q Consensus       369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~  448 (500)
                      +.++.+++++.+|++.|.+.+...+||+|++|+++|+++..|+.+.......   .....++.+++             .
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence            5688999999999999999999999999999999999999999875533110   12246677755             5


Q ss_pred             CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          449 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       449 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      .++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            68889999999999999999999999999995 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=5e-14  Score=116.44  Aligned_cols=94  Identities=19%  Similarity=0.288  Sum_probs=84.8

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      .++++++++++.+|+++|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            46789999999999999999999999999974 89999999999976211                              


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~  496 (500)
                          +.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+||++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~   97 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK   97 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence                567899999999999999999999999995 5 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.9e-13  Score=115.54  Aligned_cols=114  Identities=21%  Similarity=0.324  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.+|++.|..++...+||+|++|+++|+++..|+.+......    .+...++.+++..           
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~-----------   66 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR-----------   66 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence            5678999999999999999899999999998899999999999988654221    1224567765510           


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+++++|.+++.+++||||+++  |+++|+||.+||++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            12688999999999999999999999999999632  69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.52  E-value=1.4e-14  Score=152.11  Aligned_cols=214  Identities=14%  Similarity=0.182  Sum_probs=157.6

Q ss_pred             EEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHh---
Q 010821          221 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH---  297 (500)
Q Consensus       221 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~---  297 (500)
                      +..-++..|+.+++..+.   .....+-+..++..+...+...+.++.+.+|.+|.++++++++++++.+|++.|.+   
T Consensus        86 ~~~~l~~dd~~~ll~~l~---~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~  162 (449)
T TIGR00400        86 MINEMNLDDVIDLLEEVP---ANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK  162 (449)
T ss_pred             HHHcCChhHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence            334466667776665442   11122334455556666667777888888899999999999999999999999975   


Q ss_pred             --cCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCC
Q 010821          298 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS  375 (500)
Q Consensus       298 --~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~  375 (500)
                        +++..++|++   +++   +++|+++.+|++..      .       .+.++            +++|.+++++++++
T Consensus       163 ~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a------~-------~~~~v------------~~im~~~~~~v~~~  211 (449)
T TIGR00400       163 TKEDIYTLYVTN---ESK---HLKGVLSIRDLILA------K-------PEEIL------------SSIMRSSVFSIVGV  211 (449)
T ss_pred             CccceeEEEEEC---CCC---eEEEEEEHHHHhcC------C-------CCCcH------------HHHhCCCCeeECCC
Confidence              4567889883   345   79999999998731      0       11223            44488888999999


Q ss_pred             CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeC
Q 010821          376 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL  455 (500)
Q Consensus       376 ~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~  455 (500)
                      +++.+|++.|.+++...+||+|++|+++|+||.+|++....+.          ...+++             ....+++.
T Consensus       212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~-------------~~~gv~~~  268 (449)
T TIGR00400       212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFY-------------MIAAVKPL  268 (449)
T ss_pred             CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHH-------------HhcCCCCC
Confidence            9999999999999999999999999999999999999876553          124544             22344445


Q ss_pred             CCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          456 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       456 ~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      +++++.+++.+|.+++...|+|.-     +.|++| ..++..
T Consensus       269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence            678889999999999998887763     456666 445443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.52  E-value=1.2e-13  Score=139.56  Aligned_cols=119  Identities=13%  Similarity=0.261  Sum_probs=103.5

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +++++|.+  +++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.++...+.    .+.+.++.++|   
T Consensus       203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~im---  275 (326)
T PRK10892        203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIADVM---  275 (326)
T ss_pred             cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHHhc---
Confidence            67788987  8999999999999999999988888899998999999999999987654321    13346787754   


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                                .+++.++.+++++.+|+++|.+++++++||+|  +++++|+||++||+++
T Consensus       276 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        276 ----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence                      67899999999999999999999999999998  5899999999999975

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.52  E-value=1.2e-13  Score=130.10  Aligned_cols=172  Identities=16%  Similarity=0.286  Sum_probs=125.3

Q ss_pred             EEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhH-HHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCC
Q 010821          222 VGVLSASDFILILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEV  300 (500)
Q Consensus       222 vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i  300 (500)
                      +| ++..|+-..|.++.+- -.++.++++.+--.. .....+..  ..-...++|+++++++.+++++.+|.++|.++++
T Consensus       201 vg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~--~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~i  276 (382)
T COG3448         201 VG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRM--GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRI  276 (382)
T ss_pred             cC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHh--ccccHHHhcCccceecCCcCChHHHHHHHHHcCc
Confidence            45 7889999999887532 123455665432111 11111111  0111245799999999999999999999999999


Q ss_pred             ceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHH
Q 010821          301 ATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSA  380 (500)
Q Consensus       301 ~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~e  380 (500)
                      +.+||+|   +..   +++||++++|+++.....          .-+.+..+    -.++++.+|+.++.++.++++..+
T Consensus       277 kaLPV~d---~~~---rl~GiVt~~dl~~~a~~~----------p~qrlr~~----~~~~vk~imt~~v~tv~pdtpa~~  336 (382)
T COG3448         277 KALPVLD---EHR---RLVGIVTQRDLLKHARPS----------PFQRLRFL----RPPTVKGIMTTPVVTVRPDTPAVE  336 (382)
T ss_pred             ccccccc---ccc---ceeeeeeHHHHhhccCcc----------hHHHhhcc----CCCcccccccCcceeecCCCcHHH
Confidence            9999993   344   799999999998632211          01111111    123677889999999999999999


Q ss_pred             HHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          381 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       381 a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      ++-.+.+.+.+++||+|++|+++||||..|++..+..
T Consensus       337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence            9999999999999999999999999999999975543

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.50  E-value=6.2e-13  Score=112.72  Aligned_cols=112  Identities=18%  Similarity=0.334  Sum_probs=94.5

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.....+...    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~-------------   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA-------------   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence            46688999999999999999999999999999999999999999886543211    1123466543             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--g~liGiIS~~DIl~~  497 (500)
                      ..++.+|.+++++.+++++|.+++.+++||+|+ +  |+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            568999999999999999999999999999995 5  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.49  E-value=2.4e-13  Score=117.41  Aligned_cols=113  Identities=17%  Similarity=0.274  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|++.....+..    ..+.++.++|             
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im-------------   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL-------------   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence            57789999999999999999999999999988999999999999875443321    1246788865             


Q ss_pred             CCCceEeCCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          448 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~---------~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                      .+++.++.+++++.++.++|.         +.+.+++||+|+ +|+++|+||.+||++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence            678999999999999999653         346788899985 69999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.1e-12  Score=111.19  Aligned_cols=111  Identities=20%  Similarity=0.292  Sum_probs=94.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.+++++.++++.|.+.+.+.+||+|++ |+++|+++.+|+++.+.....   .....++.+++            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------   66 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------   66 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence            46789999999999999998999999999987 899999999999874433211   11235677654            


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                       ..++.++.+++++.++++.|.+++.+.+||+|+  |+++|+||..||++
T Consensus        67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence             567899999999999999999999999999993  89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.48  E-value=7.9e-13  Score=113.51  Aligned_cols=117  Identities=22%  Similarity=0.392  Sum_probs=95.6

Q ss_pred             CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc------CcccccHHHHHhcCCCC
Q 010821          367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDS  440 (500)
Q Consensus       367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~  440 (500)
                      +++.++.++.++.++++.|.+.+++.+||++++|+++|+++..|++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            367889999999999999999999999999988999999999999875543211000      011234554        


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                           +|...+.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||.+|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence                 34678999999999999999999999999999995 7999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.46  E-value=8.1e-13  Score=111.80  Aligned_cols=111  Identities=19%  Similarity=0.346  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|++.......      ...++.+++..          
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~----------   65 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP----------   65 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence            4678899999999999997665 889999998899999999999987654321      13566665521          


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                       ..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++
T Consensus        66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence             124668999999999999999999999999995 689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.46  E-value=6.3e-13  Score=134.10  Aligned_cols=119  Identities=13%  Similarity=0.234  Sum_probs=103.5

Q ss_pred             ccCCCCCCC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +|+++|.++  ++++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+....+..     .+.++.+++   
T Consensus       198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im---  269 (321)
T PRK11543        198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM---  269 (321)
T ss_pred             HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence            577889887  9999999999999999998889999999999999999999999875543211     134577644   


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                                .+++.++.+++++.+|++.|.+++..++||||+ +|+++|+||++||+++
T Consensus       270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~  318 (321)
T PRK11543        270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA  318 (321)
T ss_pred             ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence                      678899999999999999999999999999995 6899999999999975

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.46  E-value=2.5e-12  Score=107.92  Aligned_cols=108  Identities=22%  Similarity=0.449  Sum_probs=93.3

Q ss_pred             CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      +++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..++++......        .++.++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~-------------   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDI-------------   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHh-------------
Confidence            35778999999999999999999999999998899999999999987554321        235554             


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      |..++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||+.||++
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~  109 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK  109 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence            3567889999999999999999999999999995 699999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.4e-12  Score=108.34  Aligned_cols=112  Identities=22%  Similarity=0.442  Sum_probs=94.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.......   .....++.+++             
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~-------------   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM-------------   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence            46678999999999999999999999999988999999999999875543211   01134666644             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.++++.|.+.+.+++||+++  |+++|+||..||+++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhcC
Confidence            568899999999999999999999999999993  899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.6e-12  Score=109.20  Aligned_cols=109  Identities=21%  Similarity=0.411  Sum_probs=93.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+......      ...++.+++             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~-------------   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM-------------   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence            4667899999999999998888999999998899999999999987654431      124566654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+||.+
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~  110 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE  110 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence            567889999999999999999999999999995 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.45  E-value=2.6e-12  Score=108.46  Aligned_cols=110  Identities=18%  Similarity=0.305  Sum_probs=93.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      .+.++.++.++.++++.|.+.+.+.++|+|++|+++|+++.+|+.+.......     ...++.+++             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~-------------   64 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM-------------   64 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence            35678999999999999998999999999999999999999999875543211     134677655             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+++||||+ +|+++|+||.+||+.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  112 (113)
T cd04607          65 NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS  112 (113)
T ss_pred             cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence            567889999999999999999999999999995 689999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.3e-12  Score=107.36  Aligned_cols=95  Identities=17%  Similarity=0.354  Sum_probs=85.5

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      +++++.+++++.+|++.|.+.+++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            467899999999999999999999999999899999999999997621                                


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                        .+.++.+++++.+++++|.+++.+++||+|+ +|+++|+||++||+++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence              1567899999999999999999999999995 5899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2e-12  Score=110.62  Aligned_cols=116  Identities=17%  Similarity=0.350  Sum_probs=95.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-----CcccccHHHHHhcCCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS  442 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~  442 (500)
                      ++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++.+..........     .....++.+++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------   73 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM--------   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence            46788999999999999999999999999988999999999999876543211100     01234566544        


Q ss_pred             cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                           ..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus        74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~  122 (122)
T cd04803          74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL  122 (122)
T ss_pred             -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence                 567889999999999999999999999999995 6899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.5e-12  Score=112.54  Aligned_cols=124  Identities=21%  Similarity=0.351  Sum_probs=93.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      .+.++++++++.+|++.|.+++++.+||+|++|+++|+++..|++.....+....    ..+..........-......|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   77 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFTDSDGVK   77 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcccccccc
Confidence            3678999999999999999999999999999999999999999988654321100    011000000000000011245


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+|+++|.+++.+++||+|+ +++++|+||.+||++
T Consensus        78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence            678999999999999999999999999999995 699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.6e-12  Score=111.75  Aligned_cols=119  Identities=13%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+...      .+..+.... . ......+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARS------FPGLDPLYP-I-PLRDLTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHh------ccchhhhhh-h-hhhhccc
Confidence            56788999999999999998899999999987 9999999999998755332110      011000000 0 0000014


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  495 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl  495 (500)
                      |..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++||-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence            5678899999999999999999999999999995 68999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.1e-12  Score=110.97  Aligned_cols=116  Identities=18%  Similarity=0.320  Sum_probs=94.5

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHccccccc-------CcccccHHHHHhcCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHI-------NLSEMTIHQALQLGQD  439 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~-------~~~~~~v~~~l~~~~~  439 (500)
                      ++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+.....+......       .....++.++      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI------   75 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH------
Confidence            46788999999999999999999999999987 999999999999876543321000       0112345554      


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                             |..++++|.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus        76 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~  125 (125)
T cd04631          76 -------MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA  125 (125)
T ss_pred             -------hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence                   3567999999999999999999999999999995 5899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.43  E-value=1.5e-12  Score=128.82  Aligned_cols=120  Identities=14%  Similarity=0.408  Sum_probs=100.9

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|++  ++++++.++++.++++.+.+.+++++||++++ ++++|+++.+|++.......      ...++.+++  
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~--  139 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL--  139 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc--
Confidence            44566886  58999999999999999999999999999876 79999999999986543211      123456544  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                 . +++++.+++++.++++.|.+++.+.+||||+ .|.++|+||+.||+..++|
T Consensus       140 -----------r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        140 -----------R-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             -----------C-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence                       3 4668999999999999999999999999995 6889999999999999876

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.2e-12  Score=107.80  Aligned_cols=111  Identities=20%  Similarity=0.352  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.......    +...++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~-------------   64 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM-------------   64 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence            35678999999999999999999999999988999999999999874332211    2235666644             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++..++++.++++.|.+++.+++||+|+ +|+++|+||..||++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 NSPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence            567899999999999999999999999999995 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.43  E-value=1.1e-12  Score=112.82  Aligned_cols=117  Identities=20%  Similarity=0.407  Sum_probs=98.7

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|..+++++.|++++.+|+++|.+++++.+||++    .+   +++|-+|.++|.+.+.+..           ..+..+
T Consensus        69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~---k~VGsItE~~iv~~~le~~-----------e~i~~~  130 (187)
T COG3620          69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----ED---KVVGSITENDIVRALLEGM-----------ESIRSL  130 (187)
T ss_pred             hhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CC---eeeeeecHHHHHHHHhccc-----------cchhhh
Confidence            46999999999999999999999999999999993    25   7999999999998876532           223333


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                             +++++|..+++++++++++..+-.++..+  .++.|+ ++|+++|+||..|++++...
T Consensus       131 -------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         131 -------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence                   56777999999999999999998888654  578888 68999999999999987643

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.43  E-value=7.1e-13  Score=135.46  Aligned_cols=120  Identities=23%  Similarity=0.372  Sum_probs=106.9

Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH-HcccccccCcccccHHHHHhcC
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~-~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      .++++++..+++++++.+++.+|.+.|.+.+++++.++++++.+.||||++|+.... .++.     -...+|+++    
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~ev----  219 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEV----  219 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhh----
Confidence            367788999999999999999999999999999999999999999999999999744 3332     235777774    


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                               |+.+++++..++.+.+|+-+|.+.++++|||++  +|+++|+||..||++.+
T Consensus       220 ---------mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         220 ---------MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF  269 (610)
T ss_pred             ---------hccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence                     588999999999999999999999999999998  59999999999999875

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.4e-12  Score=107.83  Aligned_cols=95  Identities=20%  Similarity=0.332  Sum_probs=83.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      .++++.+++++.+|++.|.+++++++||++  ++++   +++|++|..|+++.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWD--SRKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEe--CCCC---EEEEEEEHHHHhhhee-------------------------
Confidence            468899999999999999999999999994  3346   7999999999985210                         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~  413 (500)
                                 +.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|++.
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                       5679999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.2e-12  Score=108.24  Aligned_cols=114  Identities=18%  Similarity=0.299  Sum_probs=91.8

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-CcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      +++++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+...++.+++            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------   69 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------   69 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence            46789999999999999999999999999988999999999999876543211100 00134566644            


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                       ..++.++.+++++.+|++.|.+.+  .+||+|+ +|+++|+||.+|++++
T Consensus        70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~~  116 (116)
T cd04643          70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILKA  116 (116)
T ss_pred             -cCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhcC
Confidence             667889999999999999998865  5999995 7999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.3e-12  Score=110.52  Aligned_cols=116  Identities=23%  Similarity=0.418  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc--------CcccccHHHHHhcCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI--------NLSEMTIHQALQLGQ  438 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~--------~~~~~~v~~~l~~~~  438 (500)
                      ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++..... ...        .....++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            46688999999999999999999999999999999999999999875432110 000        011234444      


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHH
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFK  496 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~-~~g~liGiIS~~DIl~  496 (500)
                             +|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||.+||++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence                   44678999999999999999999999999999952 3689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=4.4e-12  Score=106.73  Aligned_cols=110  Identities=16%  Similarity=0.370  Sum_probs=94.3

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..|+++.+....     ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~-------------   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI-----DLDTPVSEIM-------------   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC-----CCccCHHHhc-------------
Confidence            4678899999999999999999999999998899999999999987655432     1234566643             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++...+||+|+ +|+++|+||.+||++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence            567889999999999999999999999999995 699999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.43  E-value=3.3e-12  Score=107.59  Aligned_cols=112  Identities=19%  Similarity=0.399  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      +++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.......    ....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~-------------   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM-------------   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence            56789999999999999999899999999988999999999999876543211    1125677654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|...+.+.+||+|.+.++++|+||..||++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            6678999999999999999999999999999831489999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.5e-12  Score=111.85  Aligned_cols=114  Identities=15%  Similarity=0.292  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-------------------Ccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM  428 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-------------------~~~~~  428 (500)
                      +++++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++..........                   .....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            45678999999999999999999999999999999999999999886542211000                   00123


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          429 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       429 ~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ++.+             +|..++.++.+++++.++++.|.+.+.+++||++  +|+++|+||.+||++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~  134 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR  134 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence            4554             4466788999999999999999999999999999  389999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.6e-12  Score=108.44  Aligned_cols=113  Identities=19%  Similarity=0.351  Sum_probs=94.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.++.++.++++.|.+.+.+.+||+|++++++|+++..|+++.+....+..  ....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~~~-------------   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRDIM-------------   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHHHh-------------
Confidence            4678899999999999999888899999999999999999999987543322111  1235666654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.++++.|.+++.+++||+|  +|+++|+||.+||+++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD--DGKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE--CCEEEEEEEHHHHhcC
Confidence            56788999999999999999999999999999  3899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=5.8e-12  Score=105.92  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      +++.++++.++.++++.|.+.+...++|+|+ |+++|+++..|+.........    ..+.++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~-------------   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA-------------   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence            4567899999999999999889999999997 899999999999876543211    1245677654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.++++.|.+++.+.+||+|  +++++|+||..|++++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence            56788999999999999999999999999999  4899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=5.1e-12  Score=106.29  Aligned_cols=109  Identities=20%  Similarity=0.342  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..++++.++.++++.|.+.+.+.+||+|++|+++|+++..|+..+......     .+.++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~-------------   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV-------------   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence            46788999999999999999999999999988999999999999875443211     134666654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      .+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            56788999999999999999999999999999 3 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=6e-12  Score=105.56  Aligned_cols=108  Identities=24%  Similarity=0.402  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+++.+||+++ |+++|+++..|+++....+.      ...++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~-------------   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL------ELAKVKDVM-------------   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc------cccCHHHHh-------------
Confidence            5678899999999999999999999999998 99999999999988654431      124566654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+||..||++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence            567899999999999999999999999999995 689999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.42  E-value=6.4e-12  Score=105.47  Aligned_cols=107  Identities=24%  Similarity=0.475  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.......      +...++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~-------------   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM-------------   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence            5778999999999999999889999999998 9999999999998765332      1246677755             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+++++|.+++.+.+||+|  +|+++|+||..||++
T Consensus        63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            56788999999999999999999999999999  589999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=1.9e-12  Score=135.55  Aligned_cols=115  Identities=15%  Similarity=0.224  Sum_probs=101.2

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      ++.++|.++++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+....          ...++.++|     
T Consensus        90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM-----  154 (479)
T PRK07807         90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM-----  154 (479)
T ss_pred             ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc-----
Confidence            44566888999999999999999999999999999999999999999999995320          124577654     


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              ..+++++.+++++.+|++.|.+++++++||||+ +++++|+||.+||++..
T Consensus       155 --------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        155 --------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRAT  204 (479)
T ss_pred             --------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence                    778999999999999999999999999999995 68999999999999864

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.41  E-value=3.1e-12  Score=107.19  Aligned_cols=105  Identities=20%  Similarity=0.353  Sum_probs=92.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++....          .+.++.+++             
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~-------------   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM-------------   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence            567899999999999999999999999999999999999999997521          135677755             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence            567889999999999999999999999999995 789999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.41  E-value=4.5e-12  Score=106.91  Aligned_cols=111  Identities=16%  Similarity=0.349  Sum_probs=94.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..++.+++.....    ....++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~~~-------------   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVADVM-------------   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHHhh-------------
Confidence            45678999999999999988888999999988999999999999987654321    1234677655             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+++++|..++.+.+||+|+ +++++|+||..||++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            557788999999999999999999999999995 699999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.41  E-value=6.3e-12  Score=105.06  Aligned_cols=106  Identities=18%  Similarity=0.369  Sum_probs=91.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..+.++.++.++++.|.+.++..+||+|++|+++|+++..|+......         ..++.+++             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~-------------   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLEDIM-------------   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhHhh-------------
Confidence            46778999999999999999999999999988999999999999875422         13455544             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ...+.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence            567889999999999999999999999999995 689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4.2e-12  Score=110.55  Aligned_cols=115  Identities=17%  Similarity=0.338  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC----------------cccccHH
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH  431 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~----------------~~~~~v~  431 (500)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.............                +...++.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            467899999999999999988999999999999999999999998765432110000                0001344


Q ss_pred             HHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       432 ~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      +             +|.+++.++.+++++.++++.|.+.+.+++||+| + |+++|+||.+|++++
T Consensus        82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            3             4467789999999999999999999999999999 3 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.41  E-value=6.9e-12  Score=105.39  Aligned_cols=108  Identities=18%  Similarity=0.352  Sum_probs=91.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.++.++.+|++.|.+.+.+.+||++++ |+++|+++..|+.+.......      ..++.+++            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------   63 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------   63 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence            46789999999999999999899999999988 999999999999986654311      13444432            


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                        .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus        64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence              36788999999999999999999999999995 699999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4.2e-12  Score=108.56  Aligned_cols=118  Identities=21%  Similarity=0.336  Sum_probs=91.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++++||++   +++   +++|+++.+|++.++......      ....++.+.    .
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~---~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----~   65 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVD---ENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----L   65 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----H
Confidence            578999999999999999999999999993   345   799999999999765322110      001111110    0


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus        66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              112235567889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.9e-12  Score=108.84  Aligned_cols=116  Identities=20%  Similarity=0.344  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc-cccc----CcccccHHHHHhcCCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHI----NLSEMTIHQALQLGQDSYS  442 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~-~~~~----~~~~~~v~~~l~~~~~~~~  442 (500)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|++....... ....    .....++.++         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   72 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI---------   72 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH---------
Confidence            4678999999999999999889999999998899999999999986421110 0000    0112445554         


Q ss_pred             cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                          |..++.++..++++.++++.|.+++.+.+||+|+ +|+++|+||..||+++
T Consensus        73 ----~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~  122 (122)
T cd04635          73 ----MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ----hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence                3667899999999999999999999999999995 6999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.40  E-value=5.6e-12  Score=105.00  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=89.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....           .++.++             |
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~-------------~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDH-------------A   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhh-------------c
Confidence            4668899999999999999889999999998899999999999986421           234443             3


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ...+.++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|+++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD  105 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            556788999999999999999999999999995 689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.40  E-value=3.2e-12  Score=111.81  Aligned_cols=115  Identities=21%  Similarity=0.363  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc------cc------------Cccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------HI------------NLSEMT  429 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~------~~------------~~~~~~  429 (500)
                      ++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+.+........      ..            .....+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            577899999999999999999999999999889999999999998754322100      00            001233


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      +.+             +|..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||+.||+++
T Consensus        83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            444             4466789999999999999999999999999999  5999999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=6.3e-12  Score=106.43  Aligned_cols=110  Identities=20%  Similarity=0.336  Sum_probs=89.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.++.++.++++.|.+.+ ...++|+| +|+++|+++..|++........    ....++.+++            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------   64 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGEVM------------   64 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHHhc------------
Confidence            4567899999999999998888 66777777 5899999999999876543211    1235666644            


Q ss_pred             cCCCceEeCCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~--~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                       ..++.++.++  +++.+|+++|.+++.+.+||+|+ +|+++|+||++||++
T Consensus        65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence             5577888876  78999999999999999999995 699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.5e-12  Score=110.17  Aligned_cols=112  Identities=22%  Similarity=0.435  Sum_probs=88.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH-----HHcccccccCcccccHHHHHhcCCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS  442 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~-----~~~~~~~~~~~~~~~v~~~l~~~~~~~~  442 (500)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+...     ...+.   ..+...++.++|        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im--------   70 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVM--------   70 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhc--------
Confidence            46789999999999999998999999999988999999999999852     11110   012245677755        


Q ss_pred             cccccCCCceE--e----CCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 010821          443 PYELRSQRCQM--C----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK  496 (500)
Q Consensus       443 ~~~im~~~~~~--v----~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~  496 (500)
                           .++...  +    .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus        71 -----~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          71 -----TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             -----CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence                 333322  2    36899999999999999999999995 5 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.39  E-value=1.2e-11  Score=103.89  Aligned_cols=109  Identities=20%  Similarity=0.387  Sum_probs=91.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.........    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~-------------   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM-------------   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence            5678899999999999999888999999997 999999999999864332211    1135566654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+++||+++  |+++|+||.+||++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            567889999999999999999999999999993  89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.38  E-value=1.2e-11  Score=103.76  Aligned_cols=109  Identities=23%  Similarity=0.348  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.++.++.+|++.|.+.+.+.+||+++ |+++|+++..|+.+.......     ...++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~-------------   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM-------------   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence            4567899999999999999888999999986 999999999999886644311     235677654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+||++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            567889999999999999999999999999995 689999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.38  E-value=1.1e-11  Score=103.94  Aligned_cols=109  Identities=24%  Similarity=0.407  Sum_probs=92.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      +++.+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+.......     ...++.++             |
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~-------------~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDV-------------M   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHh-------------c
Confidence            5678999999999999999888999999998 999999999999875543211     11244443             4


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            678999999999999999999999999999995 699999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.5e-11  Score=103.40  Aligned_cols=111  Identities=14%  Similarity=0.313  Sum_probs=90.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      .+.++.+++++.++++.|.+.+...++|.+ +|+++|+++.+|+++.......   .+...++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~-------------   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRAIM-------------   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHHHh-------------
Confidence            356789999999999999888887887775 5999999999999875543110   11235677755             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.+++++|.+++..++||+|  +|+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence            55788999999999999999999999999999  4899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.37  E-value=2.1e-11  Score=129.18  Aligned_cols=224  Identities=17%  Similarity=0.259  Sum_probs=148.9

Q ss_pred             EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHH
Q 010821          210 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK  289 (500)
Q Consensus       210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~  289 (500)
                      ..|++.+.    .+.+|..++...+.+....+ .+.    ..+++...++......    ..+..+..+++++.+++++.
T Consensus        41 ~~Piv~a~----m~~vT~~ela~ava~~GglG-~i~----~~~~~e~~~~~I~~vk----~~~dim~~~~v~i~~~~tv~  107 (486)
T PRK05567         41 NIPLLSAA----MDTVTEARMAIAMAREGGIG-VIH----KNMSIEEQAEEVRKVK----RSESGVVTDPVTVTPDTTLA  107 (486)
T ss_pred             CcCEEeCC----CCCcCHHHHHHHHHhCCCCC-Eec----CCCCHHHHHHHHHHhh----hhhhcccCCCeEeCCCCCHH
Confidence            47888653    45578888888776654321 110    0112222222211110    11224678899999999999


Q ss_pred             HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CC
Q 010821          290 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RP  368 (500)
Q Consensus       290 ~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~  368 (500)
                      +|+++|.+++++++||++   +++   +++|+++.+|+....            ....++            .++|. ++
T Consensus       108 ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~------------~~~~~V------------~dim~~~~  157 (486)
T PRK05567        108 EALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET------------DLSQPV------------SEVMTKER  157 (486)
T ss_pred             HHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc------------cCCCcH------------HHHcCCCC
Confidence            999999999999999993   345   799999999986310            011223            34476 68


Q ss_pred             ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC
Q 010821          369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS  448 (500)
Q Consensus       369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~  448 (500)
                      ++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++................|..                
T Consensus       158 ~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a----------------  221 (486)
T PRK05567        158 LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA----------------  221 (486)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe----------------
Confidence            8999999999999999999999999999999999999999999976432100000000111222                


Q ss_pred             CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          449 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       449 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                        .+...+  .-.+.++.|.+.+++ ++|+|..+++..|+++.-+.++.
T Consensus       222 --ai~~~~--~~~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 --AVGVGA--DNEERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             --ecccCc--chHHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence              122222  227788899999999 45777546888888877666654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.37  E-value=1.9e-11  Score=132.18  Aligned_cols=193  Identities=17%  Similarity=0.193  Sum_probs=135.1

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc----
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI----  349 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v----  349 (500)
                      +|.++++++.+++++.+|+++|.+++++.+||++   +++   +++|++|..||++.+.......  .+.....++    
T Consensus        73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~  144 (546)
T PRK14869         73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD---EEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII  144 (546)
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence            4677899999999999999999999999999993   346   7999999999998776532100  000101111    


Q ss_pred             ------------------ccccccccC-cccCCCCCCC-ceEecCCCCHHHHHHHHHHCCCCEEEEEcCC----------
Q 010821          350 ------------------CAIPVGTWV-PKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN----------  399 (500)
Q Consensus       350 ------------------~~l~i~~~~-~~v~d~m~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~----------  399 (500)
                                        ..+.++.-. ..+.+.+.+. ++.+...   .+++..+.+.++++++|+...          
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la  221 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLELA  221 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence                              111111100 0111223333 4444333   344446778899999888643          


Q ss_pred             --CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEE
Q 010821          400 --DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLV  476 (500)
Q Consensus       400 --g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~  476 (500)
                        ..+.+++|..|.......-.      ...+|.++|             . +++.++++++++.++.+.|.+++.+++|
T Consensus       222 ~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P  282 (546)
T PRK14869        222 KENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRSYP  282 (546)
T ss_pred             HhCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence              25788888888877554321      136777754             6 7899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHH
Q 010821          477 IVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       477 VVd~~~g~liGiIS~~DIl~~  497 (500)
                      |||+ +|+++|+||.+|+++.
T Consensus       283 Vvd~-~g~lvGiit~~dl~~~  302 (546)
T PRK14869        283 VVDE-DGKVVGVISRYHLLSP  302 (546)
T ss_pred             EEcC-CCCEEEEEEHHHhhcc
Confidence            9995 7999999999999874

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.37  E-value=9.4e-12  Score=104.81  Aligned_cols=111  Identities=15%  Similarity=0.316  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++..|++........   .....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~-------------   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM-------------   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence            4678899999999999999889999999997 999999999999753322111   11124666644             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+++||+++ +|+++|+||.+||+.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            567889999999999999999999999999995 699999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.9e-12  Score=106.74  Aligned_cols=121  Identities=16%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+++++++||++  .+++   +++|+++..|+++++.................+        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~--------   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL--------   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence            567899999999999999999999999994  3325   699999999999876543211000000000001        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .+.++|..++.++.+++++.+|++.|.+++.+.+||+|++++++|+||.+|+..
T Consensus        69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence              112346678899999999999999999999999999998899999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.37  E-value=5.3e-12  Score=137.09  Aligned_cols=123  Identities=19%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++|+|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.......    ..+.++.++      
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~di------  517 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADY------  517 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHh------
Confidence            5678898889999999999999999999999999999999999999999999874432211    112456664      


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~~l~  499 (500)
                             |.+++.++++++++.+|+++|.+++.+++||||+++ ++++|+||++||++++.
T Consensus       518 -------m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        518 -------AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             -------ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                   467889999999999999999999999999999532 58999999999999864

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=1.2e-11  Score=104.68  Aligned_cols=106  Identities=25%  Similarity=0.366  Sum_probs=88.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  444 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  444 (500)
                      ++.++.+++++.++++.|.+.+...+||+|+   +|+++|+++..|+......         ..++.+++          
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~----------   63 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM----------   63 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence            4668899999999999999889999999997   7899999999998753211         24566654          


Q ss_pred             cccCCCceEeCC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          445 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       445 ~im~~~~~~v~~--~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                         ...+.++..  ++++.++++.|.+++.+.+||||+ +|+++|+||.+||++
T Consensus        64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~  113 (114)
T cd04602          64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK  113 (114)
T ss_pred             ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence               445566655  999999999999999999999995 689999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.36  E-value=9.1e-12  Score=129.05  Aligned_cols=118  Identities=16%  Similarity=0.283  Sum_probs=101.3

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|++  ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++......        ..++.+++  
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~--  261 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL--  261 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence            56777986  68999999999999999999999999999864 6899999999998643321        13455543  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                  +++.++++++++.++++.|.+++.|..+|+|+ .|.++|+||..||++.++|
T Consensus       262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence                        46789999999999999999999999999995 7999999999999999876

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=105.84  Aligned_cols=114  Identities=18%  Similarity=0.382  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc------cCcccccHHHHHhcCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~~~~~~~v~~~l~~~~~~~  441 (500)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++...........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            4678899999999999999999999999996 99999999999987544211100      0011234544         


Q ss_pred             CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                          +|..++.++.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                3466889999999999999999999999999999 3 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.9e-11  Score=103.00  Aligned_cols=110  Identities=22%  Similarity=0.395  Sum_probs=91.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~-~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++ +....+..    ....++.+++            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~~~------------   64 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGDVM------------   64 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHHhc------------
Confidence            4678999999999999999999999999997 9999999999987 33332211    1123466644            


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                       ...+.++.+++++.++++.|...+.+++||+|+ +|+++|+||..|+++
T Consensus        65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             -cCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence             567888999999999999999999999999995 689999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.35  E-value=1e-11  Score=104.77  Aligned_cols=108  Identities=14%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821          279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  358 (500)
Q Consensus       279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  358 (500)
                      ++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|+++....   .      ....+          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---~------~~~~~----------   57 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---D------YETLK----------   57 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---c------ccccC----------
Confidence            57889999999999999999999999993   345   79999999999863110   0      00112          


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        +.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        58 --v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          58 --VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              34447778889999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=1.9e-11  Score=104.15  Aligned_cols=114  Identities=23%  Similarity=0.383  Sum_probs=92.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc------CcccccHHHHHhcCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~~  441 (500)
                      ++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+............      .....++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4678899999999999999999999999997 999999999999876543211000      001133443         


Q ss_pred             CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                          +|.+++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..||++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence                44668899999999999999999999999999995 699999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=9.8e-12  Score=104.09  Aligned_cols=106  Identities=21%  Similarity=0.425  Sum_probs=89.3

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..+..+.++.++++.|.+.+...+||+|++|+++|+++.+++.....         ...++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~-------------   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM-------------   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence            5678899999999999999899999999998899999999999864311         135666654             


Q ss_pred             CCCceEeCC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~-~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ...+.++.. ++++.+++++|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            445566666 999999999999999999999995 699999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.9e-11  Score=103.56  Aligned_cols=111  Identities=20%  Similarity=0.287  Sum_probs=90.9

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821          279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  358 (500)
Q Consensus       279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  358 (500)
                      +.++.+++++.+|++.|.+++...+||++   +++   +++|+++..|+++.+.....      .....++         
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~g---~~~G~vt~~dl~~~~~~~~~------~~~~~~v---------   61 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCD---PHG---KLAGVLTKTDVVRQMGRCGG------PGCTAPV---------   61 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEehHHHHHHHhhcCC------CcccCCH---------
Confidence            56789999999999999999999999993   345   69999999999876532100      0112223         


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         .++|..+++++.+++++.+|++.|.+++...+||+|++|+++|+|+++|+++
T Consensus        62 ---~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          62 ---ENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ---HHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence               3347778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.34  E-value=1.1e-11  Score=104.00  Aligned_cols=103  Identities=17%  Similarity=0.316  Sum_probs=87.5

Q ss_pred             ecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          372 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       372 v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.++++..   .       .+.++.+++            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~~~------------   59 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSDIM------------   59 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHHHh------------
Confidence            567889999999998776     4789999988999999999998752   1       134566654            


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                       ..++.++.+++++.++++.|..++.+.+||+|+ +|+++|+||..||++.+
T Consensus        60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~  109 (109)
T cd04606          60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI  109 (109)
T ss_pred             -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence             567899999999999999999999999999995 69999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=7.5e-11  Score=123.67  Aligned_cols=206  Identities=14%  Similarity=0.172  Sum_probs=142.0

Q ss_pred             eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCC
Q 010821          209 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN  285 (500)
Q Consensus       209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~  285 (500)
                      ...|++.+.    ...+|..++...|.+.+.-+   .++        ++..+.+.......     ...|..+++++.++
T Consensus        43 l~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl--------~~~~q~~~l~~VKv-----~~iMi~~pvtv~~d  105 (479)
T PRK07807         43 TTIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDI--------PIDVVAEVVAWVKS-----RDLVFDTPVTLSPD  105 (479)
T ss_pred             cccceeecC----CcchhHHHHHHHHHHCCCceEeeCCC--------CHHHHHHHHhhccc-----ccccccCCeEECCC
Confidence            457888642    55678888877776654110   223        23333333332211     22477889999999


Q ss_pred             CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCC
Q 010821          286 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN  365 (500)
Q Consensus       286 ~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m  365 (500)
                      +++.+|+++|.+++++.+||++   +++   +++|+||.+|+...      .       ...++            .++|
T Consensus       106 ~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~------~-------~~~~V------------~diM  154 (479)
T PRK07807        106 DTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV------D-------RFTQV------------RDVM  154 (479)
T ss_pred             CCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC------c-------cCCCH------------HHhc
Confidence            9999999999999999999993   455   79999999998421      0       01223            4458


Q ss_pred             CCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccc
Q 010821          366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE  445 (500)
Q Consensus       366 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~  445 (500)
                      ..+++++++++++.+|+++|.++++..+||+|++++++|+||.+||++....... .+.-....+..+            
T Consensus       155 t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~-~~~~g~l~V~aa------------  221 (479)
T PRK07807        155 STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPA-VDAAGRLRVAAA------------  221 (479)
T ss_pred             cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCch-hhhhhccchHhh------------
Confidence            8899999999999999999999999999999988999999999999986544311 000011222222            


Q ss_pred             ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 010821          446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR  484 (500)
Q Consensus       446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~  484 (500)
                            .  .......+.++.|.+.+++. .++|..+|+
T Consensus       222 ------v--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        222 ------V--GINGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             ------h--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                  1  12234667888888888876 567754554

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=4.5e-11  Score=100.54  Aligned_cols=110  Identities=19%  Similarity=0.379  Sum_probs=90.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..|++.........   ....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~---~~~~~~~~~~-------------   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLK---PREVPVGEVM-------------   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCC---cccCCHHHhc-------------
Confidence            4677899999999999999989999999986 4999999999998754322110   1234566644             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.+++++|.+++.+.+||||+  ++++|+||..||++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            567889999999999999999999999999994  49999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.33  E-value=3.1e-11  Score=100.92  Aligned_cols=109  Identities=19%  Similarity=0.363  Sum_probs=89.3

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.......    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~-------------   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM-------------   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence            4678899999999999999999999999997 999999999999986543211    0124566654             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      ..++.++.+++++.+++++|.+ . +.+|||++ +|+++|+||++||+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence            5678889999999999999988 3 34788885 6999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.7e-11  Score=103.63  Aligned_cols=115  Identities=14%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc-----CcccccHHHHHhcCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~-----~~~~~~v~~~l~~~~~~~  441 (500)
                      +++++.++.++.++++.|.+.+++.+||+|+ |+++|+++..++.+....... ...     .....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678999999999999999999999999996 999999999999875432100 000     000123444         


Q ss_pred             CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                          +|..++.++.+++++.++++.|.+++...+||+|+ +++++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence                34668999999999999999999999999999995 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=3.9e-11  Score=102.34  Aligned_cols=114  Identities=19%  Similarity=0.388  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc-----cCcccccHHHHHhcCCCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS  442 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-----~~~~~~~v~~~l~~~~~~~~  442 (500)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..++...........     ......++.+++        
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------   73 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM--------   73 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence            4678899999999999999899999999998899999999999987543211000     011234566654        


Q ss_pred             cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                           ..++.++..++++.++++.|.+.+.+.+||+|  +|+++|++|..||++
T Consensus        74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~  120 (121)
T cd04584          74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR  120 (121)
T ss_pred             -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence                 56788999999999999999999999999999  389999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.32  E-value=3.3e-11  Score=100.04  Aligned_cols=103  Identities=17%  Similarity=0.339  Sum_probs=88.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++..+.+++++.++++.|.+.+.+.+||+| +++++|+++..|+.....          ..++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~-------------   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM-------------   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence            466789999999999999988999999998 689999999999976321          23566544             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++...+||+|  +|+++|+||..||+.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhcc
Confidence            56788999999999999999999999999999  399999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.31  E-value=1.2e-11  Score=130.36  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=93.7

Q ss_pred             ceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccc
Q 010821          369 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE  445 (500)
Q Consensus       369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~  445 (500)
                      ++++++++++.+|+++|.+++++.+||+|+   +++++|+||..|+....  .      ..+.++.++|..         
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~dIMt~---------  169 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKDFMTP---------  169 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHHHhCC---------
Confidence            468999999999999999999999999996   58999999999996421  1      234678887621         


Q ss_pred             ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                        ..+++++.+++++.+|+++|.++++++|||||+ +++++|+||++||++.
T Consensus       170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH  218 (502)
T ss_pred             --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence              137889999999999999999999999999995 6899999999999875

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.7e-12  Score=132.31  Aligned_cols=208  Identities=18%  Similarity=0.256  Sum_probs=150.3

Q ss_pred             CCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchh
Q 010821          176 LPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  255 (500)
Q Consensus       176 ~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~  255 (500)
                      +|...+.+++.. ++..++..++.+-....|.-...++-+.+-...+.-++..|.++++..+   +.+...+.|..++..
T Consensus        43 l~~~~r~~v~~l-l~~~~~~~v~~~l~~~~~~~ii~~~~~~~~~~~ie~m~~Dd~~~ll~el---p~~~~~~lL~~l~~~  118 (451)
T COG2239          43 LPGRERVVVWRL-LPKEDAAEVLGELDDEVREEIIEALSDEELAAAIEELDIDDAADLLDEL---PDEVRDELLSLLDPE  118 (451)
T ss_pred             CCHHHHHHHHHh-CCHhHHHHHHHhcCHhHHHHHHHhcCHHHHHHHHHhcCcHHHHHHHHhC---CHHHHHHHHHhCCHH
Confidence            444444444443 5555666666554221111111122222223344556666777776655   344445677777777


Q ss_pred             HHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCceEEEEEehhhHHHH
Q 010821          256 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKC  330 (500)
Q Consensus       256 ~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~  330 (500)
                      ....+...+.|+++.+|+.|..+++++.++.|+.+|+..+++.     .+..+.|+|   .++   +++|+++.++++. 
T Consensus       119 ~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~-  191 (451)
T COG2239         119 ERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD---EKG---KLLGVVSLRDLLT-  191 (451)
T ss_pred             HHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC---Ccc---ceEEEeeHHHHhc-
Confidence            7777788889999999999999999999999999999999853     468889993   445   7999999999982 


Q ss_pred             HHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHH
Q 010821          331 VCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD  410 (500)
Q Consensus       331 l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~D  410 (500)
                                  ......+++            +|.+.++++.+++...++.+++.+++.-++||||++++++|+||..|
T Consensus       192 ------------a~~~~~i~~------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDD  247 (451)
T COG2239         192 ------------AEPDELLKD------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDD  247 (451)
T ss_pred             ------------CCcHhHHHH------------HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHH
Confidence                        122344444            48888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcc
Q 010821          411 ITALAKDK  418 (500)
Q Consensus       411 i~~~~~~~  418 (500)
                      ++..+.+.
T Consensus       248 iidvi~eE  255 (451)
T COG2239         248 IIDVIEEE  255 (451)
T ss_pred             HHHHHHHH
Confidence            99876543

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.31  E-value=2.5e-11  Score=128.15  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=97.7

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      |.++++++.+++++.+|+++|.+++++.+||+|+   +|+++|+||.+|+....         ..+.+|.++|       
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIM-------  169 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVM-------  169 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHh-------
Confidence            5568899999999999999999999999999987   48999999999997532         1246788876       


Q ss_pred             CcccccCCC--ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          442 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       442 ~~~~im~~~--~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                            .+.  ++++.+++++.+|+++|.+++.+++||||+ +++++|+||++||++++
T Consensus       170 ------t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        170 ------TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK  221 (505)
T ss_pred             ------ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence                  433  889999999999999999999999999995 68999999999999876

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.31  E-value=3.5e-11  Score=100.17  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             eEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCC
Q 010821          370 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ  449 (500)
Q Consensus       370 ~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~  449 (500)
                      +++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+....           ..++.++             |..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~-------------~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDY-------------IVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhh-------------hhc
Confidence            46889999999999999999999999997 9999999999997531           1234443             355


Q ss_pred             CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          450 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       450 ~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      .+.++.+++++.++++.|.+++...+||+|  +|+++|+||.+||++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            688999999999999999999999999998  489999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.4e-11  Score=103.57  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=89.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.++++..+||++   +++   +++|+++..||++.......       ....++        
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~--------   60 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD---EDG---DLVGVVSRKDLLKASIGGAD-------LQKVPV--------   60 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHcCCC-------ccCCCH--------
Confidence            578899999999999999999999999993   335   69999999999986542110       001122        


Q ss_pred             CcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~  413 (500)
                          +++|.+  ++.++.+++++.+++++|.+++++.+||+|++   |+++|+||.+|+++
T Consensus        61 ----~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          61 ----GVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ----HHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                233653  68899999999999999999999999999987   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.31  E-value=3.2e-11  Score=103.43  Aligned_cols=122  Identities=20%  Similarity=0.363  Sum_probs=94.6

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++++++.+++++.++++.|.+++++++||++   +++   +++|+++..++++++......  .....+.       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD---GDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC---CCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence            4678899999999999999999999999993   335   799999999998765432110  0000000       001


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ....++++|.++++++.+++++.+++++|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            111345668788999999999999999999999999999998999999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.31  E-value=1.4e-11  Score=133.13  Aligned_cols=280  Identities=14%  Similarity=0.172  Sum_probs=174.7

Q ss_pred             ccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhh
Q 010821          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL  249 (500)
Q Consensus       170 ~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l  249 (500)
                      .++.|++-  .++++++.+.++.+|++.|.++     ++..+||.|.+ ++++|++|..|+...+......      +.+
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~  133 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDEN-----NVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EIL  133 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHc-----CCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhh
Confidence            35666653  4789999999999999999999     99999999954 7999999999999866543210      011


Q ss_pred             cc--cchhHHHHHHHhhcc-cc------CC------------CCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEec
Q 010821          250 ET--HTISAWKEGKAYLNR-QI------DS------------HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS  308 (500)
Q Consensus       250 ~~--~~i~~~~~~~~~~~~-~~------~~------------~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~  308 (500)
                      ..  .++..+.+....... ..      .+            ........++.+.....+   ...+.+.+++.+.|..+
T Consensus       134 ~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g  210 (546)
T PRK14869        134 SKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGG  210 (546)
T ss_pred             hhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCC
Confidence            11  111222111110000 00      00            000112234444433333   33567788999988843


Q ss_pred             CCC---------CCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CCceEecCCCCH
Q 010821          309 SSQ---------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASL  378 (500)
Q Consensus       309 d~~---------~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~~~~v~~~~~l  378 (500)
                      ..-         ..   .+.+|.|..|.......-.         ...            +++++|. ++++++++++++
T Consensus       211 ~~~~~~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~~  266 (546)
T PRK14869        211 APVSEDVLELAKEN---GVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDYL  266 (546)
T ss_pred             CCCCHHHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCcH
Confidence            110         11   3778888888776544211         122            3455598 889999999999


Q ss_pred             HHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc--ccCcc-------cccHHHHHhcCCCCCCcccccCC
Q 010821          379 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA--HINLS-------EMTIHQALQLGQDSYSPYELRSQ  449 (500)
Q Consensus       379 ~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--~~~~~-------~~~v~~~l~~~~~~~~~~~im~~  449 (500)
                      .++.+.|.+++++.+||+|++|+++|++|.+|++.....+..-  .....       +..+.+++    +.+...++|..
T Consensus       267 ~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~ii----DHH~~~~~~~~  342 (546)
T PRK14869        267 EDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEII----DHHRLGDIQTS  342 (546)
T ss_pred             HHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEe----cCCccCCCCCC
Confidence            9999999999999999999999999999999999854431100  00000       00000011    01111234555


Q ss_pred             CceEe---CCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          450 RCQMC---LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       450 ~~~~v---~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      .++.+   ....+...+.+.|.+.++...|++.  +..+.||+|-++.|+
T Consensus       343 ~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~  390 (546)
T PRK14869        343 NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFK  390 (546)
T ss_pred             CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCcc
Confidence            54444   3467777899999999998888876  457888888877665

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.30  E-value=2.6e-11  Score=127.24  Aligned_cols=114  Identities=18%  Similarity=0.343  Sum_probs=99.5

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ  438 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~  438 (500)
                      ++.|.++++++.+++++.+++++|.+++++++||+|++   ++++|+|+.+|++....         ...++.+++    
T Consensus        83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm----  149 (450)
T TIGR01302        83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVM----  149 (450)
T ss_pred             cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhh----
Confidence            44466789999999999999999999999999999987   79999999999975321         135677755    


Q ss_pred             CCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          439 DSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       439 ~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                               . .+++++.+++++.++++.|.+++.+.+||||+ +|+++|+||+.||++.+
T Consensus       150 ---------~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       150 ---------TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR  200 (450)
T ss_pred             ---------CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence                     5 48999999999999999999999999999995 79999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.30  E-value=3.2e-11  Score=100.49  Aligned_cols=104  Identities=15%  Similarity=0.404  Sum_probs=89.8

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++..+.++.++++.|.+.+...+||+|+ ++++|+++..|++..   .       ...++.+++             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---~-------~~~~~~~~~-------------   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---D-------PDETVEEIM-------------   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---C-------ccccHHHhC-------------
Confidence            5678999999999999998888889999987 999999999999752   1       124566644             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+++||+++ +|+++|+|+..||++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~  106 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence            567888999999999999999999999999995 689999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4.6e-11  Score=101.03  Aligned_cols=112  Identities=17%  Similarity=0.269  Sum_probs=90.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++  .+++   +++|+++.+|+++++......      ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v--------   62 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK--RRES---DAYGIVTMRDILKKVVAEGRD------PDRVNV--------   62 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCC---cEEEEEehHHHHHHHHhCCCC------CCccCH--------
Confidence            567899999999999999999999999994  2325   699999999999866432110      011223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus        63 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          63 ----YEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             ----HHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                3447778899999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=8.1e-11  Score=98.03  Aligned_cols=111  Identities=25%  Similarity=0.472  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++..+.++.++++.|.+.+.+.+||++++++++|+++.+|+...........    ...+.++             |
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~-------------~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDV-------------M   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHH-------------h
Confidence            4567889999999999999988999999998899999999999998665432111    1114443             3


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+|+..|+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            567888999999999999999999999999995 699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.29  E-value=8.8e-11  Score=99.40  Aligned_cols=111  Identities=25%  Similarity=0.443  Sum_probs=94.3

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  444 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  444 (500)
                      |...++++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+.........     .++.++           
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~v-----------   67 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKEV-----------   67 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHHh-----------
Confidence            4467899999999999999999999999999974 47999999999998766542211     146654           


Q ss_pred             cccCCCceEeCCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 010821          445 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF  495 (500)
Q Consensus       445 ~im~~~~~~v~~~~tL~~a~~~m~~-~~~~~l~VVd~~~g-~liGiIS~~DIl  495 (500)
                        |..+++++.+++++.++++.|.+ ++++++||+++ ++ +++|++|.+||+
T Consensus        68 --~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~  117 (117)
T COG0517          68 --MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL  117 (117)
T ss_pred             --ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence              46689999999999999999999 79999999995 55 999999999974

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.28  E-value=1.4e-10  Score=118.29  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=147.0

Q ss_pred             eEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHH
Q 010821          182 VVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGK  261 (500)
Q Consensus       182 vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~  261 (500)
                      .+.+.+..++.+|...|..+     ++..+||.|.+.+....++|..-++.++.......   ....+-..++.+.    
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~-----~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl----  231 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKS-----RIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL----  231 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhC-----CccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh----
Confidence            38899999999999999999     99999999988889999999999888886554321   1112222222221    


Q ss_pred             HhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCC
Q 010821          262 AYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS  341 (500)
Q Consensus       262 ~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~  341 (500)
                              ++|  ....+..+..++++.+|+++|.+++++.+||++   ..+   +.+|+++..|+........-     
T Consensus       232 --------~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~---~~g---~~v~~~s~~Dv~~l~~~~~~-----  290 (381)
T KOG1764|consen  232 --------GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVD---ENG---KKVGNYSRFDVIHLAREGTY-----  290 (381)
T ss_pred             --------Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEc---CCC---ceecceehhhhhhhhhcCcc-----
Confidence                    122  344689999999999999999999999999993   344   46999999999866554211     


Q ss_pred             ccccccc-cccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          342 LPILKLP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       342 ~~~l~~~-v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                       ..+..+ ++..     .. ....-..+++++.++.++.++++.|..++++++.|||++|.++|+||.+|++..+...
T Consensus       291 -~~~~~~~l~~~-----~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  291 -NNLDLSCLSEA-----LS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             -CccchhHHHHH-----hh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence             111112 2111     00 0111223589999999999999999999999999999999999999999999866543

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.28  E-value=3.1e-11  Score=126.47  Aligned_cols=113  Identities=13%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      +.++|.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+....          ...++.++|      
T Consensus        90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM------  152 (475)
T TIGR01303        90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM------  152 (475)
T ss_pred             hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc------
Confidence            3455778899999999999999999999999999988 47999999999985320          124677754      


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                             ..+++++.+++++.+|+++|.+++++++||||+ +|+++|+||.+||+++.
T Consensus       153 -------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       153 -------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRAT  202 (475)
T ss_pred             -------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence                   678999999999999999999999999999995 79999999999999864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.28  E-value=3.6e-11  Score=127.45  Aligned_cols=115  Identities=22%  Similarity=0.371  Sum_probs=100.7

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      ++++|..+++++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+.....         ...++.++|      
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim------  153 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVM------  153 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHc------
Confidence            35567789999999999999999999999999999999999999999999964211         135677755      


Q ss_pred             CCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          441 YSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       441 ~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                             . ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+||++.+
T Consensus       154 -------~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        154 -------TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhh
Confidence                   4 57899999999999999999999999999995 79999999999999865

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.28  E-value=7.3e-11  Score=99.59  Aligned_cols=109  Identities=20%  Similarity=0.357  Sum_probs=89.5

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821          279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  358 (500)
Q Consensus       279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  358 (500)
                      .+++.+++++.+|++.|.+++.+.+||++   +++   +++|+++.+|+++.+.....        ...++         
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v---------   60 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVD---ENG---RLLGTVTDGDIRRALLKGLS--------LDDPV---------   60 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEEC---CCC---CEEEEEEcHHHHHHHhcCCC--------cCCCH---------
Confidence            56789999999999999999999999993   345   79999999999875542110        11223         


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         .++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        61 ---~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          61 ---SEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             ---HHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence               3336677889999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.28  E-value=1.9e-11  Score=97.96  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV  104 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn~  104 (500)
                      .++|+ |...|++|.|.|+|++|.. .+|.+.  .+|.|++++. |.+|.|+|+|+|||.|+.||.++...-..+..-|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            46787 9999999999999998875 689884  4799999984 88899999999999999999999755444444343

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.28  E-value=1.7e-10  Score=120.85  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=119.5

Q ss_pred             EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHH
Q 010821          210 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK  289 (500)
Q Consensus       210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~  289 (500)
                      .+|++.+.    ...+|.....-.|.+.+.-+ -    .-.++++..|.+.......     ...+.++++++.+++++.
T Consensus        43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGig-v----Ih~n~~i~~qae~v~~VKv-----~eim~~~pvtv~p~~tI~  108 (475)
T TIGR01303        43 TIPLVVAN----MTAVAGRRMAETVARRGGIV-I----LPQDLPIPAVKQTVAFVKS-----RDLVLDTPITLAPHDTVS  108 (475)
T ss_pred             ccceeecc----chhhHHHHHHHHHHHCCCEE-E----EeCCCCHHHHHHHHhhcch-----hhccccCCeEECCCCCHH
Confidence            46888642    55678888777666654211 0    0012345555554443321     124667889999999999


Q ss_pred             HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCc
Q 010821          290 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL  369 (500)
Q Consensus       290 ~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~  369 (500)
                      +|+++|.+++++.+||++    ++   +++|++|.+|+...      .       ...++            .++|..++
T Consensus       109 eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~V------------~dIMt~~l  156 (475)
T TIGR01303       109 DAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQV------------RDIMSTDL  156 (475)
T ss_pred             HHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCCH------------HHHccCCc
Confidence            999999999999999983    25   79999999998410      0       01223            44588899


Q ss_pred             eEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          370 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       370 ~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      +++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus       157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence            999999999999999999999999999989999999999999986544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=7.9e-11  Score=96.78  Aligned_cols=94  Identities=17%  Similarity=0.298  Sum_probs=82.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   +++   +++|+++.+|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence            567899999999999999999999999993   345   799999999998410                          


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                                .+.++.+++++.+++++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1568899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1e-10  Score=98.32  Aligned_cols=110  Identities=20%  Similarity=0.400  Sum_probs=90.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..++++++.....        ...++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v--------   59 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD---PDE---RPIGIVTERDIVRAVAAGID--------LDTPV--------   59 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---CEEEEeeHHHHHHHHhccCC--------CccCH--------
Confidence            467899999999999999999999999993   335   79999999999876653211        11223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++..+.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus        60 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          60 ----SEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ----HHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                3336778889999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.26  E-value=3.9e-11  Score=117.88  Aligned_cols=112  Identities=17%  Similarity=0.300  Sum_probs=96.6

Q ss_pred             ccCCCCCCC-ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCC
Q 010821          360 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ  438 (500)
Q Consensus       360 ~v~d~m~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~  438 (500)
                      +++++|.++ +.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....+.     ....++.+++    
T Consensus       156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im----  226 (268)
T TIGR00393       156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM----  226 (268)
T ss_pred             hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence            667888888 899999999999999999999999999998999999999999987544321     1235677754    


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS  490 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS  490 (500)
                               .+++.++.+++++.+|++.|.+.+.+++||+|+ +|+++|+|+
T Consensus       227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~  268 (268)
T TIGR00393       227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH  268 (268)
T ss_pred             ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence                     668889999999999999999999999999995 689999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.1e-10  Score=103.24  Aligned_cols=126  Identities=21%  Similarity=0.358  Sum_probs=91.5

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc------CcccccHHHHHhcC---
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NLSEMTIHQALQLG---  437 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~------~~~~~~v~~~l~~~---  437 (500)
                      +++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ..+      .....++.++++..   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            4678999999999999999999999999997 999999999999876543210 000      00001111110000   


Q ss_pred             -----CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          438 -----QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       438 -----~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                           .......++|..++.++.+++++.+++..|.+.+.+++||++.  |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence                 0000011245678999999999999999999999999999993  89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.26  E-value=7.5e-11  Score=98.58  Aligned_cols=100  Identities=23%  Similarity=0.368  Sum_probs=87.1

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  444 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  444 (500)
                      ....+.+++++.++.+.+.+.+...+||+|+   +|+++|+++.+|+......               +           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~-----------   56 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------Y-----------   56 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------h-----------
Confidence            3567899999999999999988889999998   6999999999999764322               2           


Q ss_pred             cccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       445 ~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                        |..++.++.+++++.++++.|.+++.+.+||++  +|+++|+||+.||+++
T Consensus        57 --m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          57 --IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             --ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence              245788899999999999999999999999997  5899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=9.5e-11  Score=98.38  Aligned_cols=109  Identities=23%  Similarity=0.427  Sum_probs=90.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+.+...+||++   +++   +++|+++..++++++.....         ..++        
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~---------~~~v--------   58 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVD---GDG---HLVGLLTRDDLIRALAEGGP---------DAPV--------   58 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEEC---CCC---cEEEEeeHHHHHHHHHhcCC---------CCcH--------
Confidence            467899999999999999988899999993   345   79999999999876643210         1123        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus        59 ----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          59 ----RGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ----HHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                3336678889999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.26  E-value=1.3e-10  Score=97.43  Aligned_cols=108  Identities=22%  Similarity=0.449  Sum_probs=90.2

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++++++.+++++.+|++.|.+++...+||++   +++   +++|+++.+++++.+....           .++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~-----------~~~-------   57 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVD---EDG---RLVGIVTSWDISKAVARDK-----------KSV-------   57 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEEC---CCC---cEEEEEeHHHHHHHHhhCc-----------cCH-------
Confidence            4678899999999999999999999999993   345   7999999999986543210           112       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                           .++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus        58 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          58 -----EDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             -----HHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                 2336667889999999999999999999999999998999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.4e-10  Score=97.48  Aligned_cols=111  Identities=20%  Similarity=0.386  Sum_probs=90.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+++||++   +++   +++|+++.+++++++......      ....+         
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~---------   60 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD---DGG---RLVGIFSERDIVRKVALRGAS------ALDTP---------   60 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------ccccC---------
Confidence            467889999999999999999999999993   335   799999999999876532110      00112         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         +.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus        61 ---~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          61 ---VSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ---HHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence               23447778899999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=7.8e-11  Score=100.70  Aligned_cols=120  Identities=20%  Similarity=0.407  Sum_probs=93.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+.+++.+||++   +++   +++|+++..++++++........   ..........     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~~~~~-----   67 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVN---EDG---KLVGLLTQRDLLRAALSSLSDNG---EESLTKERDV-----   67 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEEC---CCC---CEEEEEEHHHHHHHhcccccccc---ccccccccCc-----
Confidence            467899999999999999999999999993   335   79999999999987653221100   0000000111     


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        ++.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|++|..|++.
T Consensus        68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence              234457778899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.25  E-value=1.2e-10  Score=99.09  Aligned_cols=113  Identities=15%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++.++.+++++.++++.|...+ ++.+||+|+ |+++|+++..|+..+......... ..+.++.++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~~-------------   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSEV-------------   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHHh-------------
Confidence            4567899999999999998776 889999998 999999999999875432100000 123456664             


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~---~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      |..++.++.+++++.++++.|.+++..   ..+||++ +|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            467899999999999999999998864   3468885 799999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=8.9e-11  Score=99.30  Aligned_cols=114  Identities=18%  Similarity=0.333  Sum_probs=89.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   +++   +++|+++.+++++++........  ......          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~----------   63 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDL----------   63 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCC----------
Confidence            467899999999999999999999999993   345   79999999999987653211100  000012          


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .++++|.+++.++.+++++.+|++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        64 --~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          64 --KVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             --cHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence              234447778999999999999999998754  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.24  E-value=6.4e-11  Score=125.10  Aligned_cols=113  Identities=22%  Similarity=0.227  Sum_probs=97.6

Q ss_pred             CCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          363 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       363 d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +.+..+++++++++++.+++++|.+++++.+||+|++   ++++|+++.+|+.... .        .+.++.++|     
T Consensus       100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diM-----  165 (495)
T PTZ00314        100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVM-----  165 (495)
T ss_pred             cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhh-----
Confidence            3456678999999999999999999999999999874   7999999999997421 1        136788866     


Q ss_pred             CCCcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              .+  +++++.+++++.+|+++|.+++.+.+||||+ +++++|+||++||++..
T Consensus       166 --------t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        166 --------TPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR  217 (495)
T ss_pred             --------CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence                    44  7899999999999999999999999999995 79999999999999763

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.24  E-value=5.5e-11  Score=124.98  Aligned_cols=116  Identities=13%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      +++++|++++++++++.++.++++.|.+     +....++|+|++++++|+++.+|++..  .        .+.++++++
T Consensus       132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--~--------~~~~v~~im  201 (449)
T TIGR00400       132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--K--------PEEILSSIM  201 (449)
T ss_pred             hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--C--------CCCcHHHHh
Confidence            4566699999999999999999999975     456789999999999999999998742  1        135677755


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                   .++++++.+++++.+|++.|.+++...+||||+ +|+++|+||.+|+++.+.
T Consensus       202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHH
Confidence                         667889999999999999999999999999995 799999999999998763

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.3e-10  Score=100.31  Aligned_cols=124  Identities=17%  Similarity=0.266  Sum_probs=91.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      .++++.+++++.+|++.|.++++..+||++   +++   +++|+++..|+++.........    .........+.. . 
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~-~-   69 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVD---EKG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSE-K-   69 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEEC---CCC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhh-h-
Confidence            467899999999999999999999999993   335   7999999999987653211100    000000000000 0 


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      .....+.+..++.++.+++++.+|+++|.+++.+.+||+|++++++|+||.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            00112346678899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.24  E-value=1.6e-10  Score=96.10  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|+++...              .++        
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~--------   53 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCC--------   53 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cch--------
Confidence            467889999999999999999999999993   345   7999999999985311              112        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          +++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+|+.++++.
T Consensus        54 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          54 ----GDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ----hhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                2336666788999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=100.16  Aligned_cols=123  Identities=20%  Similarity=0.332  Sum_probs=93.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.++.++.+|+++|.+++.+.+||++  .+++   +++|+++..++++++......... .......       ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~---~~~G~v~~~dl~~~~~~~~~~~~~-~~~~~~~-------~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTG---KLVGIITATDILKYLGGGEKFNKI-KTGNGLE-------AI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCC---EEEEEEEHHHHHHHhhccchhccc-cccccch-------hh
Confidence            567899999999999999999999999994  3336   799999999999876532111000 0000000       00


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ...+.++|..+++++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            11234457778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.23  E-value=4.1e-11  Score=103.42  Aligned_cols=112  Identities=12%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   +++   +++|+++..++++.+.....       ....++        
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~Gii~~~dl~~~~~~~~~-------~~~~~v--------   61 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD---ESG---KILGMVTLGNLLSSLSSGKV-------QPSDPV--------   61 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHHhcc-------CCCCcH--------
Confidence            578899999999999999999999999993   335   69999999999976553211       112233        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHH---------HCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~---------~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                          +++|.+++.++.+++++.++.+++.         +.+...+||++++|+++|+||.+|++++
T Consensus        62 ----~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          62 ----SKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             ----HHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence                4558889999999999999999653         3367788899988999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.23  E-value=1.8e-10  Score=97.48  Aligned_cols=111  Identities=18%  Similarity=0.366  Sum_probs=90.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++..+.+++++.+|++.|.+.+.+.+||++   +++   +++|+++.+|+++.+......       ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~---------   59 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVD---RDG---GVVGIITLPDLLRALEADEAG-------EPSA---------   59 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc---CCC---CEEEEEEHHHHHHHHhccccc-------cccc---------
Confidence            456889999999999999999999999993   345   799999999999765421100       0111         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~  413 (500)
                         +.++|..++.++.+++++.+++++|.+++...+||+|++  |+++|+||.+|+++
T Consensus        60 ---~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          60 ---VDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ---HHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence               233467788999999999999999999999999999987  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2.4e-10  Score=95.17  Aligned_cols=104  Identities=21%  Similarity=0.411  Sum_probs=88.4

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ++.++..+.++.++++.|.+.+.+.+||++++++++|+++..++.....          ..++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~-------------   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM-------------   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence            4567888999999999999888999999998899999999999975210          13444433             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      ..++.++.+++++.++++.|.+++.+.+||+|  +|+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence            56788899999999999999999999999999  379999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.23  E-value=4.5e-11  Score=115.54  Aligned_cols=116  Identities=16%  Similarity=0.274  Sum_probs=102.6

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      .|+|+|.  ....++.+++++.+..++..+.+.+++||+|...+++|++|.+|+....          .+.++..+    
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----------~~t~ieKV----  254 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----------PSTTIEKV----  254 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----------CCccHHHH----
Confidence            3456676  5678899999999999999999999999999999999999999997631          23667764    


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               |+++++++.+.+++..+.++|.-.++..+||+|+ +.+++|+||++|+++.+.
T Consensus       255 ---------Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq  306 (432)
T COG4109         255 ---------MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ---------hccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence                     5889999999999999999999999999999995 899999999999999873

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.23  E-value=2.1e-10  Score=96.14  Aligned_cols=109  Identities=22%  Similarity=0.422  Sum_probs=90.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+++.+.+||++  .  +   +++|+++.++++++......        ...+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~--~---~~~G~v~~~~l~~~~~~~~~--------~~~~---------   57 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD--D--G---RPLGIVTERDILRLLASGPD--------LQTP---------   57 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee--C--C---EEEEEEeHHHHHHHHhcCCC--------CCcC---------
Confidence            467899999999999999998899999994  2  6   79999999999876642210        1122         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         ++++|..+++.+.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        58 ---v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          58 ---VGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             ---HHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence               23346678889999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=1.7e-10  Score=98.25  Aligned_cols=120  Identities=20%  Similarity=0.306  Sum_probs=92.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.++++..+||++  .  +   +++|+++..+++++.........         ..+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVD--R--G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEec--C--C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            467899999999999999999999999993  2  5   79999999999976543211100         000000001


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            11345567778999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.6e-10  Score=97.00  Aligned_cols=109  Identities=14%  Similarity=0.272  Sum_probs=89.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++..+.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|++.+.....        ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v--------   59 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKD---NEE---KLKGVVTFTDILDLDLFES--------FLEKKV--------   59 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEc---CCC---CEEEEEehHHhHHHHhhcc--------cccCcH--------
Confidence            467899999999999999999999999993   345   7999999999986543110        011223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|.+++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus        60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          60 ----FNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             ----HHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence                3337778889999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.22  E-value=2.7e-10  Score=95.45  Aligned_cols=108  Identities=23%  Similarity=0.422  Sum_probs=89.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++++.......         ..++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v--------   57 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKV--------   57 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCH--------
Confidence            567899999999999999999999999993   3 6   79999999999875432110         0122        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++..+.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus        58 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          58 ----KDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ----HHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                2336668899999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.21  E-value=1.5e-10  Score=97.80  Aligned_cols=109  Identities=14%  Similarity=0.256  Sum_probs=86.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++.++.+++++.+|++.|.+++ .+.+||++   +++   +++|+++..||++......         ...++       
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v-------   59 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD---NEG---RYVGIISLADLRAIPTSQW---------AQTTV-------   59 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEc---CCC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence            5678999999999999997775 88999993   345   6999999999987553211         01222       


Q ss_pred             cCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                           .++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                 233542  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=1.6e-10  Score=97.36  Aligned_cols=112  Identities=20%  Similarity=0.293  Sum_probs=90.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..++++.+......     .....+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~-----~~~~~~---------   61 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYH-----CDGVAT---------   61 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhc-----cCCCcc---------
Confidence            467899999999999999998999999993   345   799999999999766532110     001112         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         +.++|..++..+.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus        62 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          62 ---VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             ---HHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence               23446677889999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.21  E-value=2.3e-10  Score=95.71  Aligned_cols=105  Identities=18%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..+++...             ...++.       
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~-------   56 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIE-------   56 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHH-------
Confidence            578899999999999999999999999993   356   799999999997320             012233       


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                           ++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        57 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          57 -----KVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             -----HHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                 336667889999999999999999999999999998999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2.6e-10  Score=96.01  Aligned_cols=111  Identities=15%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++..+.+++++.+|++.|.+.+.+.+||++   +++   +++|+++..|+++.+....       .+...++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i--------   60 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD---DKK---RLVGIITRYDVLSYALESE-------ELKDAKV--------   60 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEc---CCC---CEEEEEEHHHHHHhhhhhh-------hhcCCcH--------
Confidence            356789999999999999999999999993   345   6999999999987543210       0011222        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        61 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          61 ----REVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             ----HHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                3336678889999999999999999999999999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2.6e-10  Score=96.45  Aligned_cols=110  Identities=24%  Similarity=0.383  Sum_probs=86.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      +++++.++.++.+|++.|.+++ ...+||.  +  ++   +++|+++..|+++++.....       ....++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~--~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i-------   60 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E--KG---RLLGIFTERDIVRLTAIGKD-------LSDLPI-------   60 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C--CC---cEEEEEeHHHHHHHHhcCCC-------ccccCH-------
Confidence            4567899999999999998888 5667777  2  35   79999999999976542110       011223       


Q ss_pred             cCcccCCCCCCCceEecCC--CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~--~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                           .++|..++.++.++  +++.++++.|.+++...+||+|++|+++|+||++|+++
T Consensus        61 -----~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          61 -----GEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             -----HHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                 33366778888877  68999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.20  E-value=2.2e-10  Score=96.19  Aligned_cols=109  Identities=22%  Similarity=0.396  Sum_probs=89.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.++.++.+|++.|.+++.+.+||++  .  +   +++|+++..++++.+.... .      ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~--~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i--------   59 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--D--G---RLVGIVTDRDLRNRVVAEG-L------DPDTPV--------   59 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--C--C---EEEEEEEhHHHHHHHhccC-C------CccCCH--------
Confidence            567899999999999999999999999994  2  5   7999999999987544210 0      001222        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..+++.+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          60 ----SEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             ----HHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                3346778899999999999999999999999999987 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.20  E-value=2.6e-10  Score=95.67  Aligned_cols=109  Identities=15%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.++++..+||++  .+++   +++|+++..++++++.....         ..++..+     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~-----   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYD--GDLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL-----   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence            467899999999999999999999999994  2225   79999999999986642110         0112211     


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                             + .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        63 -------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 -------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                   3 36788999999999999999999999999998899999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.20  E-value=3.3e-10  Score=95.41  Aligned_cols=111  Identities=22%  Similarity=0.412  Sum_probs=91.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.++++.|.+.+.+.+||++   +++   +++|+++..++++.+......       ...+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~---------   60 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD---EDG---RLVGIFTDGDLRRALEKGLDI-------LTLP---------   60 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEc---CCC---CEEEEechHHHHHHHhccCcc-------ccCC---------
Confidence            467789999999999999988899999993   345   799999999999876532211       0112         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         +.++|..++.++.+++++.++++.|...+...+||++++|+++|+|+..||++
T Consensus        61 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          61 ---VADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ---HHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence               33447777889999999999999999999999999998899999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.20  E-value=3.4e-10  Score=94.50  Aligned_cols=106  Identities=21%  Similarity=0.368  Sum_probs=88.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++..+.+++++.+|++.|.++++..+||++   +++   +++|+++..|+++....            ..++        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~------------~~~v--------   56 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD---KDN---KLLGIVSLESLEQAYKE------------AKSL--------   56 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEc---CCC---cEEEEEEHHHHHHHhhc------------CCcH--------
Confidence            467889999999999999999999999993   345   79999999999864321            1122        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|...+.++.+++++.++++.|.+.+...+||++++|+++|++|.+|+++
T Consensus        57 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          57 ----EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ----hHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                2336667889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.20  E-value=3.3e-10  Score=94.95  Aligned_cols=107  Identities=19%  Similarity=0.401  Sum_probs=89.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.++.++.+|++.|.+++..++||++   + +   +++|+++..|+++.+....         ...++        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~--------   58 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPV--------   58 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcH--------
Confidence            678899999999999999988999999993   2 5   7999999999987543211         12223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|.+++.++.+++++.+++++|.+++.+.+||++ +|+++|+||..|+++
T Consensus        59 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          59 ----KDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ----HHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                333777889999999999999999999999999998 789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.19  E-value=1.6e-10  Score=116.63  Aligned_cols=115  Identities=15%  Similarity=0.196  Sum_probs=96.0

Q ss_pred             ccCCC--ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          274 AFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       274 ~~~~~--~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +|.++  ++++++++++.+|++.|.+++...+||++   +++   +++|+++..|+.+.+....        ....+   
T Consensus       202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~---  264 (321)
T PRK11543        202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTP---  264 (321)
T ss_pred             HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCc---
Confidence            46666  99999999999999999999999999993   445   7999999999987553210        01122   


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                               +.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus       265 ---------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        265 ---------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                     344588889999999999999999999999999999988999999999999863

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.19  E-value=2.6e-10  Score=120.59  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=97.5

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.+++.++.+++++.++++.|.+.+++.+||+|++++++|+|+..|+.+.......    ..+.++.++|     
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im-----  406 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM-----  406 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence            5677798899999999999999999999999999999988999999999999885543211    1134677754     


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              ..++.++.+++++.+++++|.+++   ++||++ +++++|+||++||+++|
T Consensus       407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence                    567889999999999999998864   355553 68999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=3e-10  Score=99.53  Aligned_cols=129  Identities=15%  Similarity=0.241  Sum_probs=92.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccC-CCC-ccccc--ccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSS-LPILK--LPICAIP  353 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~-~~~-~~~l~--~~v~~l~  353 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|+++++....... ... ..+..  ..-....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            457789999999999999999999999993   345   7999999999998764221110 000 00000  0000000


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      .......+.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+||.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            000111355668888899999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.19  E-value=1.9e-10  Score=100.55  Aligned_cols=130  Identities=19%  Similarity=0.335  Sum_probs=92.5

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc--cc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI--PV  354 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l--~i  354 (500)
                      +++.++.+++++.+|++.|.+++.+++||++   +++   +++|+++..++++++...+.........+.......  ..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            4678899999999999999999999999993   345   799999999998765432110000000000000000  00


Q ss_pred             -cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          355 -GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       355 -~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                       ......+.++|..++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence             0000134455777899999999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=3e-10  Score=98.86  Aligned_cols=127  Identities=17%  Similarity=0.325  Sum_probs=92.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccc-cc--ccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL-PI--CAIPV  354 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~-~v--~~l~i  354 (500)
                      +++++.+++++.+|++.|.+++.+++||++   +++   +++|+++..++++++........  ...... ..  .+...
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d---~~~---~~~G~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   73 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVD---NEG---RVVGIVSEGDLIRKIYKGKGLFY--VTLLYSVIFLDESKIK   73 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceEC---CCC---CEEEEEeHHHHHHHHhccCCccc--ccccccccccchHHHH
Confidence            467899999999999999999999999993   345   69999999999987754321100  000000 00  00000


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ......+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            00001344557778899999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.18  E-value=3.2e-10  Score=95.39  Aligned_cols=111  Identities=25%  Similarity=0.374  Sum_probs=90.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   +++   +++|+++..++++++......       -..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~-------~~~~---------   59 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD---DDG---RLVGIVSLDDIREILFDPSLY-------DLVV---------   59 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEEC---CCC---CEEEEEEHHHHHHHHhccccc-------ccEE---------
Confidence            567899999999999999999999999993   235   799999999998765321100       0122         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~  413 (500)
                         +.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++.
T Consensus        60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence               23447778899999999999999999999999999987 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.18  E-value=1e-09  Score=108.63  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             CCcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccc
Q 010821          271 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  348 (500)
Q Consensus       271 ~g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~  348 (500)
                      +..+|.+  .++++.+++++.++++.+.+++.+++||++  .+.+   +++|+++.+|++.++.... .        ...
T Consensus        69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d---~iiGiv~~kDll~~~~~~~-~--------~~~  134 (292)
T PRK15094         69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA-E--------AFS  134 (292)
T ss_pred             EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCC---cEEEEEEHHHHHhHhhccC-C--------cCC
Confidence            3446665  699999999999999999999999999994  3324   6999999999986542100 0        011


Q ss_pred             cccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          349 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       349 v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      +.            ++|. +++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||+..+...
T Consensus       135 l~------------~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe  191 (292)
T PRK15094        135 MD------------KVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  191 (292)
T ss_pred             HH------------HHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence            22            2354 455899999999999999999999999999989999999999999866554

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.18  E-value=4.2e-10  Score=94.64  Aligned_cols=111  Identities=15%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   + +   +++|+++..+++..+......      ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v--------   60 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLV--------   60 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCH--------
Confidence            467899999999999999999999999993   3 5   799999999998654421100      001223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++.+++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus        61 ----~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          61 ----ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ----HHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                3347777889999999999999999999999999998899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=4.2e-10  Score=96.20  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=93.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++.+.+...+....       ....+  .+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence            467899999999999999999999999993   2 5   79999999999987654322100       00000  0001


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ...++++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            11234557778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.17  E-value=5.5e-10  Score=93.54  Aligned_cols=109  Identities=21%  Similarity=0.365  Sum_probs=89.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++.+.+++++.+|++.|.+.+++.+||++  .  +   +++|+++..|+++.......         ..    +     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~--~---~~~G~v~~~dl~~~~~~~~~---------~~----~-----   56 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD--D--G---RLVGIVTLADIRRVPAEGRE---------AT----V-----   56 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee--C--C---eEEEEEEHHHHHHHHhcCcc---------cc----c-----
Confidence            567899999999999999998999999993  3  5   79999999999875432110         00    0     


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        57 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          57 --LVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             --CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence              123346778999999999999999999999999999998899999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.1e-10  Score=94.16  Aligned_cols=111  Identities=21%  Similarity=0.375  Sum_probs=88.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   + +   +++|+++..+++..+...  .    .. ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~--~----~~-~~~~---------   58 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAE--G----RD-PDTT---------   58 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhc--c----CC-cccC---------
Confidence            467899999999999999999999999993   2 6   799999999987322210  0    00 0111         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .+.++|...+.++.+++++.++++.|...+.+.+||++++|+++|+++..|+++
T Consensus        59 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 --TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             --CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              133447778889999999999999999999999999998899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=3.1e-10  Score=96.79  Aligned_cols=119  Identities=23%  Similarity=0.477  Sum_probs=91.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++++++.........  ..........     
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~-----   67 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNL-----   67 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhcc-----
Confidence            567899999999999999999999999994   2 6   899999999999776532211000  0000111111     


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+|+.+|+++
T Consensus        68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          68 --PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             --CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence              233446678899999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=4.7e-10  Score=96.89  Aligned_cols=124  Identities=15%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++.+.+++++.+|+++|.+.+++.+||++   +++   +++|++|..|+++++.......     .......... ...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~dl~~~~~~~~~~~-----~~~~~~~~~~-~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVD---DNG---KLTGIVTRHDIVDFVVRDRDKA-----RTGDRSGEKE-RML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEEC---CCC---cEEEEEEHHHHHHHHhhhhhhc-----chhhhhhhhh-hhc
Confidence            467899999999999999999999999993   335   7999999999987653211000     0000000000 000


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~  413 (500)
                      ...+.++|..+++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            0123455777899999999999999999999999999984  4689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.16  E-value=2.7e-10  Score=115.19  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             ccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          274 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       274 ~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +|.+  +++++.+++++.+|++.|.+++...+||++   +++   +++|++|..|+.+.+....       .....    
T Consensus       207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~----  269 (326)
T PRK10892        207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQA----  269 (326)
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccC----
Confidence            4665  899999999999999999999888888883   456   7999999999986432110       01112    


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                              +++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|+||++|+++.
T Consensus       270 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        270 --------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             --------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                    24455888999999999999999999999999999997 6899999999999863

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=7.4e-10  Score=93.07  Aligned_cols=110  Identities=14%  Similarity=0.328  Sum_probs=87.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      .+.++.+++++.+|++.|.+++.+.++|.+    ++   +++|+++..|+++++......      ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v--------   60 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTV--------   60 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCH--------
Confidence            467889999999999999888887777762    36   799999999999876431000      011223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++.+++++.+++++|.+++...+||++ +|+++|++|.+|+++
T Consensus        61 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          61 ----RAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             ----HHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                344777788999999999999999999999999998 589999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.15  E-value=6.5e-10  Score=94.01  Aligned_cols=109  Identities=20%  Similarity=0.319  Sum_probs=86.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++...+||++....++   +++|+++..|++...     .       ...++        
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~~v--------   59 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SETPL--------   59 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCCCH--------
Confidence            467889999999999999999999999994211146   799999999986321     0       01122        


Q ss_pred             CcccCCCCCCCceEecC--CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~--~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          +++|......+..  ++++.++++.|.+++...+||++++|+++|+||.+|+++
T Consensus        60 ----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          60 ----SEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ----HHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                3336666667755  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=9.4e-10  Score=92.41  Aligned_cols=110  Identities=23%  Similarity=0.422  Sum_probs=88.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++    ++   +++|+++..|+++++......      ....++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~--------   60 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPV--------   60 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCH--------
Confidence            467889999999999999999999999994    23   699999999999866432100      011122        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+|+.+|++.
T Consensus        61 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          61 ----GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ----HHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                33466778899999999999999999999999999865 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=5.4e-10  Score=95.46  Aligned_cols=120  Identities=19%  Similarity=0.358  Sum_probs=91.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..++++..........   ......       ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~-------~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVED---QQRTQT-------KA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccc---hhhhhh-------hc
Confidence            567899999999999999999999999993   345   79999999999864321100000   000000       01


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ...+.++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            11234457778899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.13  E-value=8.4e-10  Score=93.34  Aligned_cols=111  Identities=27%  Similarity=0.511  Sum_probs=93.5

Q ss_pred             cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821          275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  354 (500)
Q Consensus       275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  354 (500)
                      +.+.++++.++.++.+|+..|.++++..+||++    ..   +++|++|..|+++.+.......        .       
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~--------~-------   62 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRL--------L-------   62 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCcc--------c-------
Confidence            346789999999999999999999999999993    22   5999999999998876443220        0       


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHH-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT  412 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~-~~~~~lpVvd~~g-~lvGiis~~Di~  412 (500)
                           .+.++|..+++++.++.++.++.+.|.+ ++++.+||+++++ +++|++|.+|++
T Consensus        63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                 2344477789999999999999999999 7999999999886 999999999973

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.13  E-value=9.3e-10  Score=92.37  Aligned_cols=109  Identities=17%  Similarity=0.273  Sum_probs=88.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      .++.+.+++++.+|++.|.+++...+||++   + +   +++|+++..++++.+....       .....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~-------~~~~~~i--------   59 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDG-------LPSSTPV--------   59 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCC-------CCCCCCH--------
Confidence            356789999999999999999999999993   3 5   6999999999987653210       0011223        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|.+++..+++++++.++++.|.+++...+||+|+ ++++|++|..|+++
T Consensus        60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          60 ----GEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             ----HHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence                3337778889999999999999999999999999985 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.12  E-value=6.9e-10  Score=97.06  Aligned_cols=110  Identities=22%  Similarity=0.349  Sum_probs=81.9

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC-------cccccHHHHHhcCCCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-------LSEMTIHQALQLGQDS  440 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-------~~~~~v~~~l~~~~~~  440 (500)
                      .+.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++...........       .....+.+++....  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI--   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence            467899999999999999999999999999999999999999999865432211000       00111333331100  


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCC
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG  481 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~  481 (500)
                        .++.|..+++++.+++++.+|++.|.+++++++||+|+.
T Consensus        80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence              012345678999999999999999999999999999953

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=1.6e-09  Score=113.71  Aligned_cols=167  Identities=17%  Similarity=0.276  Sum_probs=117.8

Q ss_pred             eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcH
Q 010821          209 SMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNL  288 (500)
Q Consensus       209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl  288 (500)
                      ..+|++.+.    ...+|..++..++......+ .+. +   +.+++.-.+.......    ....+.++++++.+++++
T Consensus        33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~G-vI~-~---n~~~e~q~~~V~~Vk~----~~~~~~~~~vtl~~~~tv   99 (450)
T TIGR01302        33 LNIPILSSP----MDTVTESRMAIAMAREGGIG-VIH-R---NMSIEEQAEQVKRVKR----AENGIISDPVTISPETTV   99 (450)
T ss_pred             cCCCeeecC----CCccCHHHHHHHHHhcCCCc-eee-c---CCCHHHHHHHHhhhcc----ccCceecCceEeCCCCCH
Confidence            567888643    45589999888877654322 110 0   1122221221111110    112356688999999999


Q ss_pred             HHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-C
Q 010821          289 KDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-R  367 (500)
Q Consensus       289 ~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~  367 (500)
                      .+|+++|.+++++++||++.+...+   +++|+++.+|++...            ....++            .++|. .
T Consensus       100 ~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~~V------------~dvm~~~  152 (450)
T TIGR01302       100 ADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGKPV------------SEVMTRE  152 (450)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCCCH------------HHhhCCC
Confidence            9999999999999999995211115   799999999997321            012233            34477 4


Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      +++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            899999999999999999999999999999999999999999999754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.11  E-value=1.6e-09  Score=112.45  Aligned_cols=155  Identities=9%  Similarity=0.085  Sum_probs=113.4

Q ss_pred             CcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc
Q 010821          272 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  349 (500)
Q Consensus       272 g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v  349 (500)
                      ..+|.+  ++++++.++++.++++.|.+++.+++||++  ++.+   +++|+++.+|++.++..   .        ..++
T Consensus       194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~--~~~d---~ivGiv~~kDll~~~~~---~--------~~~l  257 (408)
T TIGR03520       194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYK--ETID---NITGVLYIKDLLPHLNK---K--------NFDW  257 (408)
T ss_pred             eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEc--CCCC---ceEEEEEHHHHHhHhcc---C--------CCCH
Confidence            445664  799999999999999999999999999994  2223   69999999999864321   0        0112


Q ss_pred             ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCccccc
Q 010821          350 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT  429 (500)
Q Consensus       350 ~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~  429 (500)
                                  +++|+ ++..+++++++.++++.|.+++.+..+|+|+.|.++|+||..||+..+....+...+..   
T Consensus       258 ------------~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~---  321 (408)
T TIGR03520       258 ------------QSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE---  321 (408)
T ss_pred             ------------HHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC---
Confidence                        22244 57899999999999999999999999999999999999999999986644332211100   


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhc
Q 010821          430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLAN  469 (500)
Q Consensus       430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~  469 (500)
                       .+.+.          -.....+.+....++.++.+.|--
T Consensus       322 -~~~i~----------~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       322 -DLIYS----------KIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             -ccceE----------EeCCCeEEEEeccCHHHHHHHhCC
Confidence             11010          012345667778888888888743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=7.9e-10  Score=95.38  Aligned_cols=115  Identities=11%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHh--hcccCCCCcccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~--~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      +++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|+++....  .....   ......++      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v------   66 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVD---SDD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTV------   66 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEH------
Confidence            467899999999999999999999999993   345   79999999999852210  00000   00011223      


Q ss_pred             ccCcccCCCCCCCceEe------cCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 010821          356 TWVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA  413 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v------~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~  413 (500)
                            .++|.++...+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        67 ------~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          67 ------ADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ------HHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                  33465544332      368899999999999999999999986 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.11  E-value=9.6e-10  Score=91.79  Aligned_cols=108  Identities=20%  Similarity=0.394  Sum_probs=85.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++++++......       ...++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~--------   59 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPV--------   59 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCH--------
Confidence            467899999999999999999999999993   3 5   799999999999876432110       01222        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|.+++.++++++++.+++++|.+ . ..+||++++|+++|++|.+|++.
T Consensus        60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          60 ----REVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             ----HHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence                23366678899999999999999987 3 34788988899999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.11  E-value=9e-10  Score=116.47  Aligned_cols=165  Identities=18%  Similarity=0.239  Sum_probs=117.0

Q ss_pred             EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCC
Q 010821          210 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  286 (500)
Q Consensus       210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~  286 (500)
                      ..||+...    .+.+|..+++..+...+--+   .+.+.++.    ...++..+..      ..+  +.++++++.+++
T Consensus        54 ~~Pivsa~----M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q----~~~Irkvk~~------~~g--mi~dpvtV~pd~  117 (505)
T PLN02274         54 SIPCVSSP----MDTVTESDMAIAMAALGGIGIVHYNNTAEEQ----AAIVRKAKSR------RVG--FVSDPVVKSPSS  117 (505)
T ss_pred             CCCEeccC----CcccchHHHHHHHHhCCCeEEEcCCCCHHHH----HHHHHHhhcc------ccc--ccCCCeeeCCCC
Confidence            46777432    46778888887776654211   11222221    1112222211      112  567889999999


Q ss_pred             cHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC
Q 010821          287 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  366 (500)
Q Consensus       287 sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~  366 (500)
                      ++.+|+++|.+++++.+||++....++   +++|+||..||....            ....++.            ++|+
T Consensus       118 tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~V~------------eIMt  170 (505)
T PLN02274        118 TISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETKLS------------EVMT  170 (505)
T ss_pred             cHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCcHH------------HHhc
Confidence            999999999999999999994211135   899999999996310            1123343            4477


Q ss_pred             CC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          367 RP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       367 ~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      ++  ++++.+++++.+|+++|.++++..+||+|++++++|+||++||++....
T Consensus       171 ~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        171 SDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            65  8899999999999999999999999999999999999999999986643

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.11  E-value=1.4e-09  Score=90.50  Aligned_cols=105  Identities=22%  Similarity=0.432  Sum_probs=87.4

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++++++.++.++.+|++.|.+++...+||++   + +   +++|+++..+++..      .       ...++       
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~-------   54 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETV-------   54 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccH-------
Confidence            3577899999999999999888888999993   3 5   79999999998741      0       01223       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                           +++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        55 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          55 -----EEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             -----HHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                 3346677889999999999999999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.10  E-value=1.2e-09  Score=113.44  Aligned_cols=122  Identities=14%  Similarity=0.236  Sum_probs=100.5

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+  .+++++.++++.++++.+.+++++++||.+++ ++++|++..+|++.....+.       ......+.. 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence            56777864  58999999999999999999999999999764 78999999999987543221       112222221 


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               + .+++..++++.++.++++.|.+++.|-..|||+ .|...|+||+.||+..++|
T Consensus       260 ---------~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG  312 (413)
T PRK11573        260 ---------A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ---------h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC
Confidence                     1 257889999999999999999999999999995 7999999999999999886

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.10  E-value=1.3e-09  Score=90.45  Aligned_cols=102  Identities=20%  Similarity=0.398  Sum_probs=85.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.++++.|.+++.+.+||++    ++   +++|+++..++++..             ...++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~-------------~~~~~--------   53 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAH-------------PNRLV--------   53 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhccc-------------ccCCH--------
Confidence            467789999999999999999999999993    25   799999999997521             01122        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  412 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~  412 (500)
                          .++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus        54 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          54 ----ADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             ----HHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence                2336677889999999999999999999999999997 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.10  E-value=1e-09  Score=91.76  Aligned_cols=106  Identities=21%  Similarity=0.348  Sum_probs=85.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++.+.+++++.++++.|.+++...+||++   +++   +++|+++..+++...            ....++        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~------------~~~~~v--------   56 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVD---DDG---KLVGIVTNRDLRFET------------DLDKPV--------   56 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEc---CCC---EEEEEEEhhHeeecc------------cCCCCH--------
Confidence            567899999999999999999999999993   336   799999999986310            011222        


Q ss_pred             CcccCCCCCCCceEecC-CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        57 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          57 ----SEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ----HHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                3336555566666 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.09  E-value=8.3e-10  Score=116.54  Aligned_cols=110  Identities=21%  Similarity=0.275  Sum_probs=90.8

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821          279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  358 (500)
Q Consensus       279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  358 (500)
                      .+++.+++++.+|+++|.+++++.+||++...+++   +++|++|..||...     .      ...+.++         
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V---------  163 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKV---------  163 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCH---------
Confidence            36899999999999999999999999995211246   89999999998521     0      0122334         


Q ss_pred             cccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          359 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       359 ~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                         +++|++  +++++.+++++.+|+++|.++++..+||+|++++++|+||.+|+++.
T Consensus       164 ---~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        164 ---KDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             ---HHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence               444875  78899999999999999999999999999988999999999999874

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=2.5e-09  Score=88.95  Aligned_cols=111  Identities=25%  Similarity=0.487  Sum_probs=90.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.++++.|.+++.+.+||++   +++   +++|+++.+++++++........       ..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~---------   59 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD---DDG---RLVGIVTERDLLRALAEGGLDPL-------VT---------   59 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEEC---CCC---CEEEEEeHHHHHHHHHhccCCcc-------cc---------
Confidence            467789999999999999999999999993   335   79999999999987754322110       00         


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         +.++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 ---VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             ---HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence               12335667888999999999999999999999999999999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.09  E-value=1.6e-09  Score=90.81  Aligned_cols=102  Identities=15%  Similarity=0.299  Sum_probs=83.2

Q ss_pred             cCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          282 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       282 v~~~~sl~~a~~~m~~~~-----i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      +.+++++.++++.|.+++     +..+||++   +++   +++|+++.+++++.            . .+.++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~~l~~~------------~-~~~~v-------   55 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVD---EEG---RLLGVVSLRDLLLA------------D-PDTPV-------   55 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEEC---CCC---CEEEEEEHHHHhcC------------C-CcchH-------
Confidence            578899999999998877     47899993   345   69999999998731            0 01222       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                           ++++..++..+.+++++.++++.|...+...+||+|++|+++|+|+..|+++.
T Consensus        56 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          56 -----SDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             -----HHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                 33466778899999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.08  E-value=7.5e-10  Score=113.64  Aligned_cols=120  Identities=22%  Similarity=0.345  Sum_probs=101.7

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +..+..+++++++.+++.+|+..|.++|++++.+++   .++   ...||+|.+|+...+....+.       ..+    
T Consensus       152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~---~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~----  214 (610)
T COG2905         152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD---DSG---PLLGIVTRKDLRSRVIADGRS-------KTQ----  214 (610)
T ss_pred             HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc---CCC---CccceeehHHHHHHHHhcCCC-------ccc----
Confidence            345678899999999999999999999999898883   334   589999999999887653221       123    


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                              +|+++|+.+++++...+.+.+|.-+|.+++++++||++ +|+++|++|..||+.+...
T Consensus       215 --------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         215 --------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             --------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                    44566999999999999999999999999999999996 7999999999999987653

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.07  E-value=2.1e-09  Score=113.69  Aligned_cols=163  Identities=21%  Similarity=0.276  Sum_probs=114.8

Q ss_pred             eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCC
Q 010821          209 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN  285 (500)
Q Consensus       209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~  285 (500)
                      ...|++...    ..-+|...++..+...+.-+   .+++.++..    ..++.++..        ...+..+++++.++
T Consensus        49 l~~Pii~a~----M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~----~~v~kvk~~--------e~g~i~dpvtv~pd  112 (495)
T PTZ00314         49 LKIPIVSSP----MDTVTEHKMAIAMALMGGIGVIHNNCSIEEQV----EEVRKVKRF--------ENGFIMDPYVLSPN  112 (495)
T ss_pred             cCCceeecC----ccccccHHHHHHHHHCCCeEEecCCCCHHHHH----HHHhhcccc--------ccccccCCeecCCC
Confidence            456887532    55677777776666554211   223222211    112222211        11245677899999


Q ss_pred             CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCC
Q 010821          286 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN  365 (500)
Q Consensus       286 ~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m  365 (500)
                      +++.+|+++|.+++++.+||++.+..++   +++|+++.+|+.. .     .      ....++            .++|
T Consensus       113 ~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----~------~~~~~V------------~diM  165 (495)
T PTZ00314        113 HTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----K------DKSTPV------------SEVM  165 (495)
T ss_pred             CCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----c------cCCCCH------------HHhh
Confidence            9999999999999999999995211135   8999999999862 1     0      012233            3448


Q ss_pred             CC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          366 RR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       366 ~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                      ++  +++++.+++++.+|+++|.++++..+||+|++++++|+||++||++.
T Consensus       166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence            76  78999999999999999999999999999999999999999999975

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.06  E-value=2.2e-09  Score=89.19  Aligned_cols=100  Identities=15%  Similarity=0.267  Sum_probs=84.2

Q ss_pred             eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCc
Q 010821          280 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP  359 (500)
Q Consensus       280 v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~  359 (500)
                      +++.+++++.+|++.|.+.+...+||++   + +   +++|+++..++++..              ..++          
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~--------------~~~~----------   52 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENAT--------------YGDV----------   52 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhc--------------ccch----------
Confidence            5689999999999999999999999993   3 6   799999999997521              0112          


Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                        .++|...+.++.++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus        53 --~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          53 --VDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             --hhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence              223666788999999999999999999999999998 689999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=2.6e-09  Score=94.51  Aligned_cols=126  Identities=27%  Similarity=0.480  Sum_probs=94.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcc-c---CCCCcccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-H---CSSSLPILKLPICAIP  353 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~-~---~~~~~~~l~~~v~~l~  353 (500)
                      +++++.+++++.+|++.|.+++++.+||++  +  +   +++|+++..++++++..... .   .+.....+..++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD--G--G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE--C--C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            567899999999999999999999999994  2  5   79999999999987753321 0   000011112222111 


Q ss_pred             cccc-----------CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          354 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       354 i~~~-----------~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                       ..|           ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           11345667778999999999999999999999999999987 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.04  E-value=3.1e-09  Score=90.49  Aligned_cols=119  Identities=15%  Similarity=0.289  Sum_probs=89.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      ++.++.+++++.+|++.|.+.+.+++||++   +++   +++|+++..++++.....+....         ..++ ....
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVD---EEG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            467889999999999999999999999993   335   79999999999875432211100         0000 0000


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ...+.++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            01233446678899999999999999999999999999986 99999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.03  E-value=3.5e-09  Score=88.41  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      ....+.+++++.++.+.|.+.+...+||++  ..  ++   +++|+++.+++.+....                      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~----------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN----------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence            356789999999999999998889999993  32  46   79999999999865431                      


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                              +|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|+++++|+.+
T Consensus        56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             --------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                    1556788999999999999999999999999995 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.01  E-value=3.6e-09  Score=89.89  Aligned_cols=113  Identities=12%  Similarity=0.195  Sum_probs=87.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++.++.+++++.+|++.|.+++ .+.+||++   + +   +++|+++..++++++...+...    .....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~---------   61 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKK---------   61 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCC---------
Confidence            4667899999999999998877 88999994   3 6   7999999999987654221000    00011         


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~---~lpVvd~~g~lvGiis~~Di~~  413 (500)
                         .++++|..++.++.+++++.++++.|.+++..   ..+|++++|+++|+|+..|++.
T Consensus        62 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          62 ---PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             ---cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence               23445778899999999999999999887753   4468888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.99  E-value=5.2e-09  Score=113.77  Aligned_cols=118  Identities=16%  Similarity=0.276  Sum_probs=96.3

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.+++.++++++++.++++.|.+++.+.+||+|   +++   +++|+++.+|+.+.+.....       ....      
T Consensus       452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD---~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~------  512 (574)
T PRK01862        452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD---DDG---RFRGAVALKDITSDLLDKRD-------TTDK------  512 (574)
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc---CCC---eEEEEEEHHHHHHHhhcccc-------cccc------
Confidence            4677788999999999999999999999999993   345   79999999999875432100       0011      


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK  416 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~~~~  416 (500)
                            .+.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+++...
T Consensus       513 ------~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        513 ------TAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------hHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  2344588888999999999999999999999999999876  48999999999998654

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.99  E-value=3.5e-09  Score=104.00  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             ccCCC-ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          274 AFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       274 ~~~~~-~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      +|.++ +..+.+++++.+|++.|.+.+++.+||++   +++   +++|+++..|+++.+...        .....++   
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd---~~g---~~~Givt~~dl~~~~~~~--------~~~~~~v---  222 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD---ENN---QLVGVFTDGDLRRALLGG--------GSLKSEV---  222 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe---CCC---CEEEEEEcHHHHHHHhcC--------CcccCcH---
Confidence            46667 88999999999999999999999999993   345   799999999998754311        0112333   


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC  407 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis  407 (500)
                               .++|.+++.++.+++++.+|+++|.+.+...+||+|++|+++|+|+
T Consensus       223 ---------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       223 ---------RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ---------HHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                     3448888999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.96  E-value=1.9e-08  Score=97.59  Aligned_cols=109  Identities=16%  Similarity=0.312  Sum_probs=94.2

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ....++.+++++.+-.++..+.+.+|+||++   ...   +++|++|.+|++..             ..+.++       
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn---~~~---kvvGvVt~rDv~~~-------------~~~t~i-------  251 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVN---RSM---KVVGVVTMRDVLDK-------------KPSTTI-------  251 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceec---ccc---eEEEEEEehhhhcC-------------CCCccH-------
Confidence            4677899999999999999999999999993   344   79999999999831             113334       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                           ..+|+++++++.+.++++.+.+.|.-.++.-+||+|++.+++|+||++|+++.+.
T Consensus       252 -----eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         252 -----EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             -----HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                 3349999999999999999999999999999999999999999999999998654

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.91  E-value=1.6e-08  Score=105.88  Aligned_cols=119  Identities=19%  Similarity=0.321  Sum_probs=98.8

Q ss_pred             cCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          361 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       361 v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      ++++|++  ++..++.+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. .     ......    
T Consensus       208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~----  277 (429)
T COG1253         208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL----  277 (429)
T ss_pred             eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc----
Confidence            4555764  588899999999999999999999999999 45799999999999986654321 0     111111    


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                -++++.++++.++.++++.|.+.+.|-..|+|+ -|.+.|+||+.||+..++|
T Consensus       278 ----------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         278 ----------VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             ----------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence                      137889999999999999999999999999995 7999999999999999986

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.90  E-value=7.4e-09  Score=107.07  Aligned_cols=115  Identities=16%  Similarity=0.303  Sum_probs=100.2

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      .+|.+|+..++++.++.|+.+++..+++     ..+..++|+|++++++|+++.++++..-          .+..+.++|
T Consensus       133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----------~~~~i~~im  202 (451)
T COG2239         133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----------PDELLKDLM  202 (451)
T ss_pred             hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----------cHhHHHHHh
Confidence            5577799999999999999999999984     3468899999999999999999997531          135666654


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                                   .+.++++.++++.+++.+.+.+++.-.+||||+ +++++|+||..|++..+
T Consensus       203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi  252 (451)
T COG2239         203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVI  252 (451)
T ss_pred             -------------cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHH
Confidence                         667999999999999999999999999999996 79999999999998765

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=3.7e-08  Score=81.86  Aligned_cols=104  Identities=23%  Similarity=0.400  Sum_probs=84.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.++.++.+++..|.+.+.+.+||++   +++   +++|+++.+++++..    .         ..++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~----~---------~~~~--------   54 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP----E---------EEQL--------   54 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc----c---------cchH--------
Confidence            467889999999999999998999999993   235   799999999987410    0         0112        


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                          .++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|++.
T Consensus        55 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          55 ----ALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             ----HHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                2235567888999999999999999999999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.85  E-value=5.2e-09  Score=76.96  Aligned_cols=54  Identities=30%  Similarity=0.506  Sum_probs=50.8

Q ss_pred             ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      +|.++++++++++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++++
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence            56889999999999999999999999999999995 7999999999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.83  E-value=3.1e-08  Score=86.54  Aligned_cols=113  Identities=16%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcc-ccc---ccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILK---LPICAIP  353 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~-~l~---~~v~~l~  353 (500)
                      .++++.+++++.+|++.|.+++++.+||++   +++   +++|++|..|+++++............ .+.   ..+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            467899999999999999999999999993   345   799999999999877542211000000 000   0011110


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN  399 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~  399 (500)
                      ..   ..+.+.|..+++++.+++++.+|+++|.+++++.+||+|++
T Consensus        76 ~~---~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 TK---GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hh---hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            00   00112245678899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.80  E-value=1e-08  Score=75.33  Aligned_cols=54  Identities=30%  Similarity=0.529  Sum_probs=50.5

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            456888999999999999999999999999999999999999999999999865

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.79  E-value=5.5e-08  Score=102.97  Aligned_cols=113  Identities=12%  Similarity=0.196  Sum_probs=89.3

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|++.|.+++++.+||++   +++   +++|+|+..|+++.+.....       ....++    
T Consensus       340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v----  402 (454)
T TIGR01137       340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT---EAG---KVLGSVTLRELLSALFAGKA-------NPDDAV----  402 (454)
T ss_pred             hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHhccCC-------CcCCCH----
Confidence            4677899999999999999999999999999993   345   79999999999976543100       011223    


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                              .++|.+++.++++++++.+++++|.+++   .+||+++++++|+||++|++..
T Consensus       403 --------~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       403 --------SKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             --------HHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence                    3447778889999999999999998754   3455557999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.75  E-value=3.5e-08  Score=78.25  Aligned_cols=72  Identities=29%  Similarity=0.411  Sum_probs=58.9

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCC-ceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSEYGI  100 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~~~ykf~VDg~w~~d~~~~~~~~~~g~  100 (500)
                      .++|. |..+|++|.|.++|++|....+|.+.  .+|.|++.+++.. |.|.|+|.|||.|.+++.++...+....
T Consensus         5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~   78 (83)
T cd02688           5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSG   78 (83)
T ss_pred             cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcc
Confidence            46777 77778999999999997666789774  4699999999988 9999999999999999887655444333

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.74  E-value=4.9e-07  Score=92.21  Aligned_cols=108  Identities=18%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  447 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  447 (500)
                      ......++.+..++++.|...+...+.|+|+++++.|.++..++.......         ..+.+.+             
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------  308 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL-------------  308 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence            344566777899999999999999999999999999999999987755432         3345433             


Q ss_pred             CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ...+.++.++++|.+++..|.+++.. +||||+ +|+++|+||..+|++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence            45677899999999999999999998 999996 799999999999999875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.68  E-value=1e-07  Score=78.48  Aligned_cols=65  Identities=25%  Similarity=0.535  Sum_probs=50.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc--------CCc-eEEEEEEE-CCEE--eeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQP   92 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~~~ykf~V-Dg~w--~~d~~~~   92 (500)
                      -++|+ |...|++|+|+|+||+|+.. .+|.|.  ..|+|++.++.        +.| .|.|++.. ||+|  +.||-+.
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            36777 99999999999999999874 589884  47999999874        344 56666666 7875  6777765


Q ss_pred             e
Q 010821           93 F   93 (500)
Q Consensus        93 ~   93 (500)
                      .
T Consensus        84 ~   84 (99)
T cd02854          84 Y   84 (99)
T ss_pred             E
Confidence            4

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PRK11573 hypothetical protein; Provisional

Probab=98.66  E-value=8.1e-07  Score=92.32  Aligned_cols=166  Identities=14%  Similarity=0.167  Sum_probs=120.7

Q ss_pred             HhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCCh
Q 010821          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE  246 (500)
Q Consensus       167 l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~  246 (500)
                      |++.++.|+|-.-.+++.++.+.++.++++.+.+.     +.+..||++.+..+++|++...|++..+..    ....  
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~-----~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~--  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHS-----PHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF--  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhC-----CCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC--
Confidence            45778899988888999999999999999999999     999999998877899999999999864321    0100  


Q ss_pred             hhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhh
Q 010821          247 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  326 (500)
Q Consensus       247 ~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~d  326 (500)
                            ....+.+               ..+++..++++.++.++++.|++++.|-+.|+|   +.|   ...|+||..|
T Consensus       253 ------~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleD  305 (413)
T PRK11573        253 ------TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVED  305 (413)
T ss_pred             ------CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHH
Confidence                  1111111               134678999999999999999999999999994   445   5899999999


Q ss_pred             HHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHH
Q 010821          327 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL  385 (500)
Q Consensus       327 Il~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m  385 (500)
                      |++.+.........  ......+..+             ......++...++.++.+.+
T Consensus       306 ilEeivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        306 ILEEIVGDFTTSMS--PTLAEEVTPQ-------------NDGSVIIDGTANVREINKAF  349 (413)
T ss_pred             HHHHHhCCCCcccC--cccccceEEe-------------cCCEEEEEeeeEHHHHHHHh
Confidence            99988765433110  0000111111             12345677777888877766

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=3.8e-07  Score=94.18  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=88.1

Q ss_pred             ecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCc
Q 010821          372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC  451 (500)
Q Consensus       372 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~  451 (500)
                      ..++.+..+++..|...+.+.++|+|++++++|+++..++......+         .++.+++             ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence            34667889999999999999999999999999999999997654432         2345443             3467


Q ss_pred             eEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       452 ~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      .++.++++|.+++..|..+... +||||+ +|+++|+||..++++.+.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALD  393 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence            8899999999999999998776 999996 799999999999999874

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.63  E-value=1.2e-07  Score=87.38  Aligned_cols=120  Identities=15%  Similarity=0.371  Sum_probs=102.0

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +|+++|.+  ..+++..+.++.+++..+.+...+++||+.+ .+.+.|++-.+||+.++.....      ...+.+++  
T Consensus        68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL--  139 (293)
T COG4535          68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL--  139 (293)
T ss_pred             hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc--
Confidence            44566754  4788999999999999999999999999975 4589999999999997665421      24566655  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                  +|.+.++++-.+...++-+...+.|...|||+ =|-+-|.||..||+..++|
T Consensus       140 ------------RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 ------------RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             ------------ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence                        57889999999999999999999999999995 6899999999999999986

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.55  E-value=6e-07  Score=88.95  Aligned_cols=165  Identities=17%  Similarity=0.239  Sum_probs=117.2

Q ss_pred             CCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecC
Q 010821          207 GISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAG  283 (500)
Q Consensus       207 ~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~  283 (500)
                      .-...|++.+    ....+|..+.+.++..+...+   -|-+.|. ..-.+..|+..+..           ...+++.+.
T Consensus        59 itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-----------~~~~p~v~s  122 (503)
T KOG2550|consen   59 ITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-----------FINNPIVIS  122 (503)
T ss_pred             ccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-----------cccCCcccC
Confidence            4456688764    366788888777766554211   1122111 11123344443332           234678899


Q ss_pred             CCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCC
Q 010821          284 PNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE  363 (500)
Q Consensus       284 ~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d  363 (500)
                      |+.++.++++....+++..+||.... ..  .++|+|+||-+||- |+.++           ...            +.+
T Consensus       123 p~~tvg~v~~~k~~~gF~g~pvTe~g-~~--~~KLvG~vtsrdi~-f~~~~-----------~~~------------~~~  175 (503)
T KOG2550|consen  123 PTTTVGEVKEAKEKHGFSGIPVTEDG-KR--GSKLVGIITSRDIQ-FLEDN-----------SLL------------VSD  175 (503)
T ss_pred             CcccchhhhhhcccccccccccccCC-cc--cceeEEEEehhhhh-hhhcc-----------cch------------hhh
Confidence            99999999999999999999999421 11  24899999999984 44211           122            244


Q ss_pred             CCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       364 ~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                      +|+.+.++.+...++.++-+++.+.+...+||||++|+++.++++.||.+.
T Consensus       176 vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             hcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            588888999999999999999999999999999999999999999999874

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.51  E-value=2.5e-06  Score=89.37  Aligned_cols=117  Identities=16%  Similarity=0.217  Sum_probs=94.6

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      ..++++++.+.++.++++.+.+++.+|+||++ ++.+    .++|++..+|++........ .    .....        
T Consensus       215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D----~iiGiv~~Kdll~~~~~~~~-~----~~~~~--------  276 (429)
T COG1253         215 RTDIVALDLTDTVEELIELILESGHSRIPVYD-GDLD----NIIGIVHVKDLLRALLDGQS-D----LDLRV--------  276 (429)
T ss_pred             cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCC----cEEEEEEHHHHHHHHhcCcc-c----cchhh--------
Confidence            45789999999999999999999999999995 2333    59999999999987654311 0    00000        


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  419 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~  419 (500)
                               .-++++.++++.++.++++.|.+.+.+-..|+|+-|...|+||..||+..+....
T Consensus       277 ---------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei  331 (429)
T COG1253         277 ---------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI  331 (429)
T ss_pred             ---------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence                     1127889999999999999999999999999999999999999999998665543

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.49  E-value=8e-07  Score=87.47  Aligned_cols=122  Identities=15%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +|.|+|.+  ++..+..+++..++.+.+.+..+.++|+..+ -+.++|++..+|+++++.++..       .+-.++++.
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~  273 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA  273 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH
Confidence            56777864  5888999999999999999999999999854 3479999999999998776531       122233321


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                 -.+++.++++++|.+-+..|.+++.|.-.|||+ =|.+.|+||+.||+..++|
T Consensus       274 -----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         274 -----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc
Confidence                       247889999999999999999999999999996 6999999999999999886

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.46  E-value=3.7e-07  Score=94.84  Aligned_cols=149  Identities=19%  Similarity=0.334  Sum_probs=112.0

Q ss_pred             ccccccccccCc-------ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-----CcEEEEEeHHHHHHHH
Q 010821          348 PICAIPVGTWVP-------KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-----DSLLDIYCRSDITALA  415 (500)
Q Consensus       348 ~v~~l~i~~~~~-------~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-----g~lvGiis~~Di~~~~  415 (500)
                      .++.+|+-.|.+       +++|+|..+++++..-+.+..+.+++....++.+||+|+.     +++.|+|-++.++.++
T Consensus       564 ~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  564 QLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             hccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            345555555543       5689999999999999999999999999999999999862     5899999999999887


Q ss_pred             Hccccccc--Cccc------ccHHHHHhcCCC---CCCc----------ccccCCCceEeCCCCCHHHHHHHHhcCCCCE
Q 010821          416 KDKAYAHI--NLSE------MTIHQALQLGQD---SYSP----------YELRSQRCQMCLPSDTLHKVMERLANPGVRR  474 (500)
Q Consensus       416 ~~~~~~~~--~~~~------~~v~~~l~~~~~---~~~~----------~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~  474 (500)
                      +++.+..-  +..+      .+..++......   ..-.          ..+|...++++.+++++..++..+.+-+.|+
T Consensus       644 ~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRh  723 (762)
T KOG0474|consen  644 KKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRH  723 (762)
T ss_pred             HhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhccee
Confidence            76544321  1111      222222211100   0000          1368889999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEehHHHHHH
Q 010821          475 LVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       475 l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      +.||+. .++++|++|++|+.++
T Consensus       724 LlVv~~-~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  724 LLVVPK-TNRVVGILTRKDLARY  745 (762)
T ss_pred             EEEecC-CCceeEEEehhhhhhH
Confidence            999995 6888999999999854

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.45  E-value=3.5e-07  Score=90.54  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  444 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  444 (500)
                      +++.+.|+.++.++++....+++..+||+.+   .++|+|+||.+|+-.+ .+.        ...+.++           
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~v-----------  176 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDV-----------  176 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhh-----------
Confidence            5678899999999999999999999999964   3599999999999776 221        2556654           


Q ss_pred             cccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       445 ~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                        |++..++...+.+|.++-+.+.+++...|||||+ +|.++.+|++.||.+.
T Consensus       177 --mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  177 --MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN  226 (503)
T ss_pred             --cccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence              4667788899999999999999999999999996 7999999999999874

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.44  E-value=1.5e-07  Score=75.33  Aligned_cols=57  Identities=32%  Similarity=0.599  Sum_probs=45.7

Q ss_pred             eEEEE-ecCCCceEEEEEccCC-CCCC-CCCCcccCCCCeEEEEEE--cCCceEEEEEEECCE
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE   84 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~g~~~ykf~VDg~   84 (500)
                      -++|+ |...|++|.|++.|++ |... .+|.+. ..+|+|+++++  +++|.+.|+|.|||.
T Consensus        12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~   73 (85)
T PF02922_consen   12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGD   73 (85)
T ss_dssp             EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence            56777 9999999999999999 8754 588741 46899999999  888988888888764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.21  E-value=2.2e-05  Score=80.22  Aligned_cols=109  Identities=11%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821          279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  358 (500)
Q Consensus       279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  358 (500)
                      .....++.+..+++..|..++...+.|++   +++   ++.|+++..++..++...            ..+         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~---------  304 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVD---RQN---KLVGVVDVESIKQARKKA------------QGL---------  304 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEc---CCC---CEEEEEeHHHHHHHhhcC------------Cch---------
Confidence            34566777899999999999999999993   344   699999999987654321            111         


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                         .+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus       305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       305 ---QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             ---hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence               122444577899999999999999999998 99999999999999999999876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.15  E-value=2.6e-05  Score=76.99  Aligned_cols=131  Identities=18%  Similarity=0.302  Sum_probs=105.7

Q ss_pred             hhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChh
Q 010821          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE  247 (500)
Q Consensus       168 ~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~  247 (500)
                      ..-|+-|.|-.-+.++.+|.+.|.++..+.+...     --..+|||..+..+.+|++-..|+++.+.+..    +...+
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s-----~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~  268 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHS-----PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKE  268 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhC-----CCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHh
Confidence            4567888887778999999999999999999998     78889999888788999999999988775431    12111


Q ss_pred             hhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhH
Q 010821          248 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI  327 (500)
Q Consensus       248 ~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dI  327 (500)
                      +        +..               ...++..|+..+++.+-+..|++++-|-..|+|   +-|   .+.|++|.+||
T Consensus       269 d--------~~~---------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDI  319 (423)
T COG4536         269 D--------ILR---------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDI  319 (423)
T ss_pred             H--------HHH---------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHH
Confidence            1        111               133678999999999999999999988888893   556   79999999999


Q ss_pred             HHHHHhhcc
Q 010821          328 LKCVCRYFR  336 (500)
Q Consensus       328 l~~l~~~~~  336 (500)
                      ++.+...|.
T Consensus       320 lEEIVGdft  328 (423)
T COG4536         320 LEEIVGDFT  328 (423)
T ss_pred             HHHHhcccc
Confidence            998876654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.14  E-value=4.8e-05  Score=70.50  Aligned_cols=117  Identities=13%  Similarity=0.139  Sum_probs=95.3

Q ss_pred             cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821          275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  354 (500)
Q Consensus       275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  354 (500)
                      .....+++..+.++.+++..|.+..-+|+||+..  +..   .+.||+-.+|+++++......         -.+++   
T Consensus        75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~---  137 (293)
T COG4535          75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP---------FDIKE---  137 (293)
T ss_pred             cHHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc---------ccHHH---
Confidence            4557899999999999999999999999999952  222   599999999999987643211         11222   


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                                +-+|.+.|+++-.+.-.++.+...+.+-.+|+|+-|-+-|+||..|++..+-..
T Consensus       138 ----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd  191 (293)
T COG4535         138 ----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD  191 (293)
T ss_pred             ----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence                      235788899999999999999999999999999999999999999999866543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.07  E-value=4.9e-05  Score=78.62  Aligned_cols=106  Identities=11%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             ecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcc
Q 010821          281 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPK  360 (500)
Q Consensus       281 ~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~  360 (500)
                      ...++.+..+|+..|..++...+.|++   +++   +++|+++..++.+.....            ..+.          
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~----------  340 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLD----------  340 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchh----------
Confidence            345677899999999999999999993   445   799999999997654211            1121          


Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                        +.+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..+++..+..
T Consensus       341 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        341 --AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             --hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence              12344577899999999999999987766 9999999999999999999986654

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.90  E-value=3.7e-05  Score=63.54  Aligned_cols=63  Identities=22%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             EEEE-ecCCCceEEEEEccCCCC-----CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCee
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI   94 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~~~   94 (500)
                      ++|. |...|++|.|+. |++|.     ..++|.+  ..+|+|++.++ +.+|.+ |+|.|+|.     ...||-...+
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~   84 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL   84 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence            6775 999999999998 88886     3458877  45899999987 555654 88888775     7788877654

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.88  E-value=2.4e-05  Score=66.14  Aligned_cols=54  Identities=26%  Similarity=0.462  Sum_probs=48.8

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      +++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+||.+
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            455668888999999999999999999999999999999999999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.73  E-value=6.9e-05  Score=63.28  Aligned_cols=50  Identities=20%  Similarity=0.402  Sum_probs=45.3

Q ss_pred             ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                      +|.+.+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence            44678889999999999999999999999999995 689999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.73  E-value=0.00025  Score=58.98  Aligned_cols=68  Identities=24%  Similarity=0.455  Sum_probs=45.7

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEEC-CE--EeeCCCCCeeeC
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GE--WRHDEHQPFISS   96 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VD-g~--w~~d~~~~~~~~   96 (500)
                      ++|+ |..+|++|.|.++|++|... .+|.+.+ ..|.|.+.++ +++| .|.|++..+ |.  .+.||...-++.
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~   97 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL   97 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence            5666 99999999999999999653 5787642 3799999886 6666 444444443 33  344555543333

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.71  E-value=0.0001  Score=50.72  Aligned_cols=47  Identities=38%  Similarity=0.578  Sum_probs=42.8

Q ss_pred             ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          451 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       451 ~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                      +.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            567899999999999999999999999995 58999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.68  E-value=8.2e-05  Score=79.81  Aligned_cols=66  Identities=27%  Similarity=0.538  Sum_probs=52.4

Q ss_pred             eeEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCe
Q 010821           26 IPMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPF   93 (500)
Q Consensus        26 ~~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~~   93 (500)
                      -.++|. |...++.|.|.|+||+|... .+|... +..|.|+++++ +++| +.|||.+++.     ++.||..-.
T Consensus        36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~  109 (628)
T COG0296          36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARR  109 (628)
T ss_pred             CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhc
Confidence            468887 99999999999999999984 355432 25699999999 9999 9999999653     366666543

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.67  E-value=0.00011  Score=76.96  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=103.3

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhh-cccCC-C--Ccccc--
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY-FRHCS-S--SLPIL--  345 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~-~~~~~-~--~~~~l--  345 (500)
                      ++++.++++++..-+.+....+.+.....+..||+|..+.+. ..++.|++-.+.++..+... |.+.. .  ..+..  
T Consensus       585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~  663 (762)
T KOG0474|consen  585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRK  663 (762)
T ss_pred             hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhc
Confidence            456888999999999999999999999999999996422221 23789999999988877543 11110 0  00000  


Q ss_pred             ---------ccccccccccccC----cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 010821          346 ---------KLPICAIPVGTWV----PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  412 (500)
Q Consensus       346 ---------~~~v~~l~i~~~~----~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~  412 (500)
                               ..+++++.+....    -.+..+|.+.+.++.+++++..++.++++-+.+.+.||++..+.+|++|++|+.
T Consensus       664 ~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~  743 (762)
T KOG0474|consen  664 FTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLA  743 (762)
T ss_pred             CCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhh
Confidence                     1122333221110    023456778899999999999999999999999999999988999999999998


Q ss_pred             HH
Q 010821          413 AL  414 (500)
Q Consensus       413 ~~  414 (500)
                      ..
T Consensus       744 ~~  745 (762)
T KOG0474|consen  744 RY  745 (762)
T ss_pred             hH
Confidence            53

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.59  E-value=0.00022  Score=49.03  Aligned_cols=47  Identities=30%  Similarity=0.543  Sum_probs=42.3

Q ss_pred             ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      +.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45788999999999999999999999999889999999999997653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.58  E-value=0.00019  Score=58.81  Aligned_cols=56  Identities=25%  Similarity=0.554  Sum_probs=44.0

Q ss_pred             eeEEEEe---cCCCceEEEEEccC---CCCC--CCCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           26 IPMRFVW---PYGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        26 ~~~~f~~---~~~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      |.++|.-   ...++.|+|+||..   +|++  .++|...+.  ....|++++.||.| .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            5667764   34489999999998   7997  468876532  45899999999998 69999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.56  E-value=0.00062  Score=55.55  Aligned_cols=45  Identities=24%  Similarity=0.527  Sum_probs=37.5

Q ss_pred             CCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .|++|+|+|+   |.+|++.  .+|...  ..+.|++++.||+| .++|||++
T Consensus        13 ~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808          13 WGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence            4799999995   8899864  578763  46789999999987 79999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.53  E-value=0.00063  Score=58.18  Aligned_cols=57  Identities=21%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             eeEEEEec--CCCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEEC
Q 010821           26 IPMRFVWP--YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD   82 (500)
Q Consensus        26 ~~~~f~~~--~~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VD   82 (500)
                      +++.+..+  ..++.|+|+|+   +.+|++.  .+|.+.....+.|++.+.||++ .++|||++.
T Consensus         3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814           3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            44555553  34799999999   9999854  5787642245789999999998 899999994

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.43  E-value=0.00034  Score=76.81  Aligned_cols=64  Identities=25%  Similarity=0.523  Sum_probs=50.3

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEE---CCEEe--eCCCCCe
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQPF   93 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V---Dg~w~--~d~~~~~   93 (500)
                      -++|+ |...|++|+|+|+||+|+.. .+|.+.  ..|+|++.++ +.+| ..|||.|   ||.+.  .||-+..
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~  210 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ  210 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence            46786 99999999999999999875 588763  5799999986 6777 3577777   78664  6776654

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.43  E-value=0.00035  Score=76.94  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=48.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc-------CCceEEEEEEE---CCE--EeeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-------PPGYHQYKFCV---DGE--WRHDEHQP   92 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~g~~~ykf~V---Dg~--w~~d~~~~   92 (500)
                      -++|+ |.+.|++|+|+|+||+|+.. .+|.+.  ..|+|++.++-       +.| ..|||.|   ||.  ++.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            56777 99999999999999999875 589874  47999999873       334 3677777   364  46777654


Q ss_pred             e
Q 010821           93 F   93 (500)
Q Consensus        93 ~   93 (500)
                      .
T Consensus       192 ~  192 (758)
T PLN02447        192 Y  192 (758)
T ss_pred             e
Confidence            3

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.0013  Score=69.18  Aligned_cols=127  Identities=13%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             ceEecCC-CCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC----CC
Q 010821          369 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD----SY  441 (500)
Q Consensus       369 ~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~  441 (500)
                      +..++.+ .++.+...+|.+..++.+||+=  +...++|++.++|+...+........-....+. .......+    .+
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP  636 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence            5555554 8999999999999999899873  346899999999987533211000000001111 00000000    00


Q ss_pred             Cc---ccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          442 SP---YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       442 ~~---~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                      .+   ..+|.-.+.++...++...+++++.+-+.+.+.|..  +|++.|+||..|++++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            01   136778899999999999999999999999998877  79999999999999863

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.32  E-value=0.0008  Score=55.87  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE   84 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~   84 (500)
                      ++|. |...|++|.|+. |++|.  ..++|.+.  .+|+|++.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCc
Confidence            5675 999999999999 76664  33578763  4799999985 66665 799999994

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.29  E-value=0.00085  Score=73.97  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=49.8

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEE-CCEE--eeCCCCCeee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFIS   95 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~V-Dg~w--~~d~~~~~~~   95 (500)
                      .++|+ |...|++|+|+|+||+|... .+|.+.  ..|+|++.++ +.+| .|.|++.. +|.|  +.||-.....
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            56776 99999999999999999875 588774  5799999998 4445 66666654 5765  4566555443

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.26  E-value=0.002  Score=53.05  Aligned_cols=57  Identities=19%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             eeeEEEEecC----CCceEEEEE---ccCCCCCCC-CCCccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        25 ~~~~~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .||++|.-..    .|++|+|+|   ++.+|+... +|.... ...+.|++.+.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            3788888532    378999999   677998742 343321 234789999999998 69999998

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.25  E-value=0.00091  Score=57.09  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=44.3

Q ss_pred             EEEE-ecCCCceEEEEEccCCCC---C--CCCCCccc-CCCCeEEEEEE-cCCceEEEEEEECCEEeeC
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHD   88 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~~~ykf~VDg~w~~d   88 (500)
                      ++|. |...|++|.|+. |++|.   +  .++|.+.+ +.+|+|++.++ +.+|. .|+|.|+|.|.-+
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~   75 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE   75 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence            5675 999999999999 99886   2  24665532 23699999986 67776 7999999975433

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.20  E-value=0.00068  Score=78.40  Aligned_cols=64  Identities=27%  Similarity=0.598  Sum_probs=49.3

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEEC---CEE--eeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQP   92 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD---g~w--~~d~~~~   92 (500)
                      -++|. |...|++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+   |.|  +.||-..
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~  710 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF  710 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence            56787 99999999999999999875 478763 34699999986 78885 6888884   554  4566543

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.16  E-value=0.0025  Score=51.72  Aligned_cols=62  Identities=23%  Similarity=0.454  Sum_probs=45.1

Q ss_pred             eeEEEEecC--C-CceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEE---CC--EEeeCCC
Q 010821           26 IPMRFVWPY--G-GRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EWRHDEH   90 (500)
Q Consensus        26 ~~~~f~~~~--~-~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V---Dg--~w~~d~~   90 (500)
                      +.++|.-++  . |+.++|+|+-.   +|++..+|...   .+.|++.+.||+| .++|||++   ||  .|...++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~N   75 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNN   75 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCC
Confidence            345555333  3 78999999874   89987777653   4679999999987 79999998   44  3655443

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.12  E-value=0.0052  Score=50.99  Aligned_cols=65  Identities=29%  Similarity=0.575  Sum_probs=48.2

Q ss_pred             eeeEEEEecC-----CCceEEEEEccC---CCCCCC-----CCCcccCCCCeEEEEEEcCCc-eEEEEEEE---CC--EE
Q 010821           25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EW   85 (500)
Q Consensus        25 ~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V---Dg--~w   85 (500)
                      .||++|+-..     .|++++|+|+-.   +|+...     +|..  .....|++.+.||.| ..+|||++   ||  .|
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W   79 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLKAPADGTGTW   79 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence            3899999753     378999999866   898732     5654  345689999999998 69999998   44  36


Q ss_pred             eeCCCC
Q 010821           86 RHDEHQ   91 (500)
Q Consensus        86 ~~d~~~   91 (500)
                      ...++.
T Consensus        80 E~g~Nr   85 (103)
T cd05820          80 EGGSNH   85 (103)
T ss_pred             EeCCCE
Confidence            555443

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.10  E-value=0.006  Score=62.82  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHH
Q 010821          388 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL  467 (500)
Q Consensus       388 ~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m  467 (500)
                      ++.+.+.|+|.     |+++..+...+.+...       ..++.+ +             .....+++++++|.+++..+
T Consensus       298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~  351 (382)
T TIGR03415       298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR  351 (382)
T ss_pred             cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence            78889999985     8888888765443211       123333 2             34577889999999999999


Q ss_pred             hcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          468 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       468 ~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      .+++.. ++|+|  +|+++|+|+..+|+.++.+
T Consensus       352 ~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       352 HRTGGA-ILLVE--NGRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             hcCCCC-eEEee--CCeEEEEEeHHHHHHHHhc
Confidence            998754 88998  3999999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.08  E-value=0.0012  Score=72.40  Aligned_cols=65  Identities=31%  Similarity=0.600  Sum_probs=49.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc-CCceEEEEEEECC---EE--eeCCCCCee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPFI   94 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~~~ykf~VDg---~w--~~d~~~~~~   94 (500)
                      -++|+ |...|++|+|+|+||+|... .+|.+.  ..|+|++.++- .+| ..|||.|+|   .+  +.||-+...
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~  111 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF  111 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence            46776 99999999999999999875 588875  36999999873 455 468888854   43  677766543

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.0078  Score=63.56  Aligned_cols=133  Identities=12%  Similarity=0.119  Sum_probs=93.8

Q ss_pred             CceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCC--c-ccccccccccc
Q 010821          278 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS--L-PILKLPICAIP  353 (500)
Q Consensus       278 ~~v~v~~~-~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~--~-~~l~~~v~~l~  353 (500)
                      +++.+..+ .++.|...+|.+...+..||+-+ .+..   +++|++..+++.-.+..........  . -....+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666666 89999999999999999999842 3334   7999999999887665321110000  0 01122222111


Q ss_pred             ccc-cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          354 VGT-WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       354 i~~-~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      -+. ..-..+++|...+.++...++..-+++++.+-+.+.+.|. ++|++.|+||.+|++...
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            111 1114567788889999999999999999999999888776 589999999999998764

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.93  E-value=0.0093  Score=49.67  Aligned_cols=58  Identities=19%  Similarity=0.431  Sum_probs=42.3

Q ss_pred             ceeeEEEEec---CCCceEEEEEccC---CCCCC--CCCCccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWP---YGGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~---~~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.=.   ..|+.|+|+|+-.   +|++.  .+|....  ...+.|++.+.||++ .++|||++
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            3466777633   3489999999865   79864  4775421  134789999999988 59999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.82  E-value=0.0031  Score=70.62  Aligned_cols=66  Identities=26%  Similarity=0.492  Sum_probs=48.8

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEEC-CEE--eeCCCCCe
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQPF   93 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VD-g~w--~~d~~~~~   93 (500)
                      -++|+ |...|++|.|+|+||+|... .+|.+. ...|+|++.++ +++| .|.|++..+ |.|  ..||-.-.
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~  204 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA  204 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence            46787 99999999999999999864 588774 25799999986 6666 666666654 454  45554443

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.79  E-value=0.0072  Score=48.17  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEEC-CEEeeCCCCCee
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI   94 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VD-g~w~~d~~~~~~   94 (500)
                      ++|. |...|++|.|...+  |. ..+|.+.  .+|.|++.+.-.+|. .|+|.|+ |..+.||.+...
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~   72 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ   72 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence            5676 99999999999743  54 4688763  579999998733665 4777776 468888888753

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.67  E-value=0.019  Score=47.16  Aligned_cols=46  Identities=26%  Similarity=0.476  Sum_probs=37.0

Q ss_pred             CCCceEEEEEcc---CCCCCC--CCCCcccCCCCeEEEEEEcCCc--eEEEEEEE
Q 010821           34 YGGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV   81 (500)
Q Consensus        34 ~~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykf~V   81 (500)
                      ..+++|+|+|+-   .+|++.  ++|...  ....|++.+.+|++  .++|||++
T Consensus        12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816          12 PKGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             CCCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence            358999999985   489964  578764  45789999999986  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.61  E-value=0.0094  Score=58.45  Aligned_cols=168  Identities=17%  Similarity=0.242  Sum_probs=110.0

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      .+.++.|+  -.|.||+++     -+++.++    ++|   +++-+=|..+|+..-...+-      ..+-..+....+ 
T Consensus       215 ~KTIvFit--HDLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV------~~Fv~~v~~~~V-  273 (386)
T COG4175         215 KKTIVFIT--HDLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYV------RDFVRNVDRSRV-  273 (386)
T ss_pred             CCeEEEEe--cCHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHH------HHHHhcCChhhe-
Confidence            34455554  347777765     2678888    467   79998899988742111100      000001100000 


Q ss_pred             ccCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHH
Q 010821          356 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA  433 (500)
Q Consensus       356 ~~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  433 (500)
                         -+..++|.+  ....-.+...-..++..+.....+.+.+++..++.+|+++..++...                  +
T Consensus       274 ---ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------~  332 (386)
T COG4175         274 ---LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------A  332 (386)
T ss_pred             ---eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------c
Confidence               033455653  22222333344567888888888788888878889999999888663                  0


Q ss_pred             HhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          434 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       434 l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      +             ..++.++..++++.+.+..+.+.... ++|||+ +++++|+|+...++.+|.+
T Consensus       333 ~-------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde-~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         333 L-------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVDE-DGRYVGIISRGELLEALAR  384 (386)
T ss_pred             c-------------cccccccCccchHHHHHHHHhcCCCc-eeEEcC-CCcEEEEecHHHHHHHHhc
Confidence            1             23566788999999999999888764 889995 8999999999999998864

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.57  E-value=0.013  Score=48.29  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             eeeEEEEec-C---CCceEEEEEccC---CCCCCC--CCC-c-ccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           25 LIPMRFVWP-Y---GGRSVFLSGSFN---RWSELL--PMS-P-VEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        25 ~~~~~f~~~-~---~~~~V~l~Gsf~---~W~~~~--~m~-~-~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .|+++|.-. .   .|++|+|+|+-.   +|++..  .|. . .......|++.+.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            377888853 2   379999999866   898653  232 1 11245689999999998 69999998

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.54  E-value=0.011  Score=48.67  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=36.9

Q ss_pred             CCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .|+.++|+|+   ..+|++.  .+|...  ....|++.+.||+| .++|||++
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence            3789999999   5589964  477663  35689999999987 69999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.52  E-value=0.02  Score=46.89  Aligned_cols=54  Identities=20%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             eeEEEE----ecCCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           26 IPMRFV----WPYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        26 ~~~~f~----~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      |+++|.    ....++.|+|+|+-.   +|++.  ++|...  ....|++.+.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence            355565    223478999999877   89964  466553  45789999999998 79999987

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.50  E-value=0.012  Score=48.03  Aligned_cols=54  Identities=19%  Similarity=0.407  Sum_probs=40.7

Q ss_pred             eeEEEEec--CCCceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           26 IPMRFVWP--YGGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        26 ~~~~f~~~--~~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      +.+++.++  .+++.++|+|+=.   +|+...+|...  ..+.|++.+.||++ .++|||++
T Consensus         3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           3 VTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             EEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence            33444445  3457789999765   79987788763  45789999999998 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.40  E-value=0.007  Score=67.82  Aligned_cols=62  Identities=13%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEE--CCE--EeeCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV--DGE--WRHDEHQ   91 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V--Dg~--w~~d~~~   91 (500)
                      =++|+ |.++|++|+|+|+||+ ....||.+. ...|.|++.+++..|.. |||.|  ||+  ...||-+
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            46776 9999999999999997 334588875 35699999999666632 66665  785  4555544

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.34  E-value=0.01  Score=64.08  Aligned_cols=62  Identities=24%  Similarity=0.312  Sum_probs=49.6

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECC-EEeeCCCCCeeeC
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFISS   96 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg-~w~~d~~~~~~~~   96 (500)
                      ++|+ |...|++|.|.+.   + ...+|.+.  .+|+|+++++ +.+| +.|+|.||| ..+.||.+.....
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~   65 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPD   65 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccccc
Confidence            4675 9999999999973   3 34689874  4799999997 7778 789999999 7889998876543

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.29  E-value=0.018  Score=63.24  Aligned_cols=66  Identities=27%  Similarity=0.514  Sum_probs=49.2

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEEC---CE--EeeCCCCCee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPFI   94 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD---g~--w~~d~~~~~~   94 (500)
                      -++|+ |.+.|++|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|+|.|+   |.  ++.||-....
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~  102 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA  102 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence            46777 99999999999999999865 478764 23699999986 45565 5888883   54  4677766543

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.19  E-value=0.024  Score=46.03  Aligned_cols=47  Identities=23%  Similarity=0.493  Sum_probs=37.8

Q ss_pred             CCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCC--c-eEEEEEEE
Q 010821           34 YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV   81 (500)
Q Consensus        34 ~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~~~ykf~V   81 (500)
                      ..|+.++|+|+..   +|++.  ++|...+ ..+.|++.+.+|+  | .++|||++
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            4489999999987   79853  5776642 2578999999999  6 79999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.79  E-value=0.031  Score=44.76  Aligned_cols=61  Identities=23%  Similarity=0.503  Sum_probs=37.1

Q ss_pred             eEEEEecC------CCceEEEEEccCCCCCC--CCCCccc--CCCCeEEEEEEcCCceEEEEEEE-CC--EEee
Q 010821           27 PMRFVWPY------GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWRH   87 (500)
Q Consensus        27 ~~~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~~~ykf~V-Dg--~w~~   87 (500)
                      ++++.|..      ++.+|++.+.|++|+..  .+|.++.  ...+.|++++.+|..-|+..|+- ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            45555533      36889999999999875  3566542  12689999999999988888887 65  5633

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.77  E-value=0.059  Score=58.27  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=52.8

Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHc
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~  417 (500)
                      .+.-+|+++|.+++.++..+.|..|..+.+....++.+|+|++  ..-++|.|.++.+..++..
T Consensus       585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            3444789999999999999999999999887776999999986  3479999999999887644

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.29  E-value=0.12  Score=42.54  Aligned_cols=55  Identities=27%  Similarity=0.538  Sum_probs=38.8

Q ss_pred             eEEEEecCC-CceEEEEEccC---CCCCC--CCCCccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           27 PMRFVWPYG-GRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        27 ~~~f~~~~~-~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .+.+.++-. |++++|+|+-.   +|++.  .+|.... .....|++.+.+|++ .++|||+|
T Consensus         3 ~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           3 SFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            344444443 79999999765   79764  4675421 223489999999987 69999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>TIGR02104 pulA_typeI pullulanase, type I

Probab=95.08  E-value=0.056  Score=59.40  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=46.4

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-cCCc-eEEEEEEECCE--EeeCCCCCee
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVDGE--WRHDEHQPFI   94 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VDg~--w~~d~~~~~~   94 (500)
                      ++|+ |...|++|.|++ |++|..     .++|.+  ...|+|++.++ +.+| .|.|++..+|.  ++.||-+...
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~--~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~   94 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKR--GENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV   94 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEeccc--CCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence            6786 999999999998 888853     347876  35799999987 4556 44444444564  5888887643

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.90  E-value=0.35  Score=40.56  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             EecCCCceEEEEEcc---CCCCCC--CCCCccc-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 010821           31 VWPYGGRSVFLSGSF---NRWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV   81 (500)
Q Consensus        31 ~~~~~~~~V~l~Gsf---~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~~~ykf~V   81 (500)
                      +..+.+++++|+|+=   -+|+..  ++|....     .....|++.+.||+|    .++|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            456678999999974   489865  4666531     134579999999996    69999997

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=94.33  E-value=0.32  Score=41.55  Aligned_cols=84  Identities=18%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             eeEEEEec----CCCceEEEEEccCCCCCC-----CCCCcccCCCCeEEEEEEcCCc-eEEEEEEECCE-----------
Q 010821           26 IPMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE-----------   84 (500)
Q Consensus        26 ~~~~f~~~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VDg~-----------   84 (500)
                      .-+||.|.    +....+.|.|+.|++...     ..|.+.+ ..++|..++.||.+ +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            35899999    445779999999999532     3677774 45899999999998 78999996432           


Q ss_pred             -----EeeCCCCCee-eCC---CCCeeeEEEeccC
Q 010821           85 -----WRHDEHQPFI-SSE---YGIVNTVLLATEP  110 (500)
Q Consensus        85 -----w~~d~~~~~~-~~~---~g~~nn~l~v~~~  110 (500)
                           -+.||-||.. ...   .|..-+++...+.
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A  115 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA  115 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence                 3789999853 333   4788888887654

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PLN02960 alpha-amylase

Probab=94.25  E-value=0.044  Score=61.19  Aligned_cols=56  Identities=27%  Similarity=0.488  Sum_probs=41.4

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCC-CCCc--c-cCCCCeEEEEEE--cCCce-------EEEEEEEC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELL-PMSP--V-EGCPTVFQIIWS--IPPGY-------HQYKFCVD   82 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~-~m~~--~-~~~~~~~~~~~~--L~~g~-------~~ykf~VD   82 (500)
                      -++|. |..||+.++|+|+||||+++. .|.+  . ...-|+|.++++  |..|.       -+|.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            45555 999999999999999999874 4431  0 123589999986  87772       36788775

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.88  E-value=0.4  Score=46.05  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc--------c-cCcccccHHHHHhcCC
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA--------H-INLSEMTIHQALQLGQ  438 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--------~-~~~~~~~v~~~l~~~~  438 (500)
                      .++.|+-+  +.||+++-     +++.|.+ +|+++-+=+..+++.-.++....        . ..+...++.+.+....
T Consensus       188 TivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~  259 (309)
T COG1125         188 TIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE  259 (309)
T ss_pred             EEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence            46666655  78998764     4588887 79999999988887533221100        0 0112234444432211


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                      .         ..--.........+++..+...+...+||||+ +|+++|.||..+|+..
T Consensus       260 ~---------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~  308 (309)
T COG1125         260 P---------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE  308 (309)
T ss_pred             c---------ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence            0         00111233445556888888999999999995 8999999999999875

>PLN02316 synthase/transferase

Probab=93.73  E-value=0.27  Score=56.57  Aligned_cols=57  Identities=14%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             eEEEEecCC------CceEEEEEccCCCCCCC----CCCcccC-CCCeEEEEEEcCCceEEEEEEE-CC
Q 010821           27 PMRFVWPYG------GRSVFLSGSFNRWSELL----PMSPVEG-CPTVFQIIWSIPPGYHQYKFCV-DG   83 (500)
Q Consensus        27 ~~~f~~~~~------~~~V~l~Gsf~~W~~~~----~m~~~~~-~~~~~~~~~~L~~g~~~ykf~V-Dg   83 (500)
                      ++++.|+..      +.+|++.|.||+|....    .|.+.+. .++.|.+++.+|+.-|..-|+. ||
T Consensus       330 ~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        330 TVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             EEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            788888843      58899999999999642    3334332 4568999999999999999997 77

>PLN02950 4-alpha-glucanotransferase

Probab=92.50  E-value=0.91  Score=52.00  Aligned_cols=67  Identities=27%  Similarity=0.516  Sum_probs=46.4

Q ss_pred             ceeeEEEE--ecC-CCceEEEEEccC---CCCCC--CCCCccc-CCCCeEEEEEEcCCc-eEEEEEEE---CCE---Eee
Q 010821           24 VLIPMRFV--WPY-GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV---DGE---WRH   87 (500)
Q Consensus        24 ~~~~~~f~--~~~-~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V---Dg~---w~~   87 (500)
                      ..+.++|.  +.. -|++|+|+|+-.   +|+..  .+|.... .....|++++.||+| ..+|||++   +|.   |-.
T Consensus         7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE~   86 (909)
T PLN02950          7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWEA   86 (909)
T ss_pred             CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeeec
Confidence            34566666  333 489999999886   69864  5775431 123489999999997 69999995   443   765


Q ss_pred             CCC
Q 010821           88 DEH   90 (500)
Q Consensus        88 d~~   90 (500)
                      .++
T Consensus        87 g~N   89 (909)
T PLN02950         87 GKK   89 (909)
T ss_pred             CCC
Confidence            553

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.38  E-value=0.34  Score=53.95  Aligned_cols=54  Identities=22%  Similarity=0.429  Sum_probs=41.0

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCC----CCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w   85 (500)
                      ++|. |...|++|.|+ -|++|..    ..+|.+  +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus        16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             EEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence            5676 99999999996 5665542    347876  35799999996 67776 4999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.28  E-value=0.31  Score=48.17  Aligned_cols=92  Identities=13%  Similarity=0.222  Sum_probs=69.3

Q ss_pred             CCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCC
Q 010821          285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP  364 (500)
Q Consensus       285 ~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~  364 (500)
                      ...-..++..+.....+.+.++  + ..+   +.+|+++..++.+.                                 .
T Consensus       292 ~~~~~~al~~~~~~~~~~~~~~--~-~~~---~~~g~v~~~~~~~~---------------------------------~  332 (386)
T COG4175         292 GDGPRVALKLLRDEGREYGYAV--D-RGN---KFVGVVSIDSLVKA---------------------------------A  332 (386)
T ss_pred             ccccchhhhhhhhccchhhHHH--h-ccC---ceeeEEeccchhcc---------------------------------c
Confidence            3444567777877777777777  2 344   68999998887642                                 0


Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                      +...+.++..++++.+.+..+.+... .++|+|++++++|++++..++.++.
T Consensus       333 ~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         333 LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            23356788899999999988876654 6889999999999999999998654

>PLN02316 synthase/transferase

Probab=92.03  E-value=0.42  Score=55.02  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=50.8

Q ss_pred             eEEEEecCC------CceEEEEEccCCCCCC---CCCCcccCCCCeEEEEEEcCCceEEEEEEE-CCE--EeeCCCCC
Q 010821           27 PMRFVWPYG------GRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQP   92 (500)
Q Consensus        27 ~~~f~~~~~------~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V-Dg~--w~~d~~~~   92 (500)
                      ++++.|+..      ..+|.|.|.||+|.-.   .+|.|.+..++.|++++.+|++-|..-|+. ||.  |-++..+.
T Consensus       155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~D  232 (1036)
T PLN02316        155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKD  232 (1036)
T ss_pred             eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCCc
Confidence            566666654      4779999999999864   367776656788999999999999999998 773  55555443

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=91.86  E-value=0.4  Score=55.74  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEE-cCCc-----eEEEEEEECC----EEeeCCCCC
Q 010821           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP   92 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~~~ykf~VDg----~w~~d~~~~   92 (500)
                      ++|+ |...|++|.|++ ++++|..   .++|.+  ...|+|++.++ +.+|     -+.|+|.|++    ....||-+.
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~--~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKK--GDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEeccc--CCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            5676 999999999998 5566754   468887  35799999987 4443     3688888866    467787665


Q ss_pred             ee
Q 010821           93 FI   94 (500)
Q Consensus        93 ~~   94 (500)
                      .+
T Consensus       407 al  408 (1111)
T TIGR02102       407 SL  408 (1111)
T ss_pred             EE
Confidence            43

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=91.35  E-value=0.38  Score=53.19  Aligned_cols=54  Identities=19%  Similarity=0.412  Sum_probs=41.1

Q ss_pred             EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w   85 (500)
                      +.|+ |...|++|.|+. |++|.  ...+|.+  +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus        21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPA--RSGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCeeeEeeee--ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            6776 999999999997 77653  2357865  35799999987 56665 5999999854

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=90.64  E-value=1.2  Score=46.50  Aligned_cols=88  Identities=18%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             CCceeeEEEEecCCC--------ceEEEE--EccC--CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEEC---C--
Q 010821           22 DTVLIPMRFVWPYGG--------RSVFLS--GSFN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G--   83 (500)
Q Consensus        22 ~~~~~~~~f~~~~~~--------~~V~l~--Gsf~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VD---g--   83 (500)
                      .....-+||.|.+..        ++|+|-  |..+  .+....+|.+.. ..++|..++.||.. +-.|+|+++   +  
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~  113 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-GTDVWQWSTELSANWRGSYCFIPTERDDIF  113 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-CCceEEEEEEECcccEEEEEEEeccccccc
Confidence            345689999999742        358873  2222  233334788875 45899999999998 899999982   1  


Q ss_pred             ----------E------E-------eeCCCCCee-eCCCCCeeeEEEeccC
Q 010821           84 ----------E------W-------RHDEHQPFI-SSEYGIVNTVLLATEP  110 (500)
Q Consensus        84 ----------~------w-------~~d~~~~~~-~~~~g~~nn~l~v~~~  110 (500)
                                .      |       +.||.||.. .++.|+..|++.+.+.
T Consensus       114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a  164 (411)
T PRK10439        114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQA  164 (411)
T ss_pred             cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCC
Confidence                      0      2       377888753 3444554577777654

>PLN02950 4-alpha-glucanotransferase

Probab=90.58  E-value=1.8  Score=49.69  Aligned_cols=89  Identities=20%  Similarity=0.377  Sum_probs=57.8

Q ss_pred             CCceeeEEEE--ec--CCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCCc--eEEEEEEE---CC--EE
Q 010821           22 DTVLIPMRFV--WP--YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DG--EW   85 (500)
Q Consensus        22 ~~~~~~~~f~--~~--~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykf~V---Dg--~w   85 (500)
                      .+..++++|.  .+  ..|++|+|+|+=.   +|++.  .+|..  .....|++.+.+|++  ..+|||++   +|  .|
T Consensus       149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~--~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W  226 (909)
T PLN02950        149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY--TGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL  226 (909)
T ss_pred             CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc--CCCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence            3445777777  43  3589999999765   89865  35654  346789999999988  59999998   44  38


Q ss_pred             eeCCCCCeeeCCC-CCeeeEEEeccCCC
Q 010821           86 RHDEHQPFISSEY-GIVNTVLLATEPNF  112 (500)
Q Consensus        86 ~~d~~~~~~~~~~-g~~nn~l~v~~~~~  112 (500)
                      -..++.-...... ++..-++...+..+
T Consensus       227 E~g~NR~~~~p~~~~~~~~~~~~~~~~~  254 (909)
T PLN02950        227 ELGVNRELSLDSSSGKPPSYIVASDGAF  254 (909)
T ss_pred             eeCCCceeecCcccCCceEEEecccccc
Confidence            7666654333322 33333333444433

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=89.55  E-value=1.6  Score=49.90  Aligned_cols=66  Identities=20%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEEC------CE----EeeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP   92 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD------g~----w~~d~~~~   92 (500)
                      -++|+ |...|++|.|++.+++|.  ...+|.+. ...|+|++.++ ...|. .|+|.|+      |+    +..||-..
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~  213 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV  213 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence            35676 999999999997766664  23578763 24699999986 44554 3666664      54    37888776


Q ss_pred             ee
Q 010821           93 FI   94 (500)
Q Consensus        93 ~~   94 (500)
                      ..
T Consensus       214 al  215 (898)
T TIGR02103       214 SL  215 (898)
T ss_pred             eE
Confidence            44

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=88.58  E-value=0.94  Score=46.75  Aligned_cols=47  Identities=11%  Similarity=0.190  Sum_probs=40.0

Q ss_pred             CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                      ...++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            46688999999999999887765 4888885 99999999999987653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.48  E-value=2.7  Score=40.56  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          374 PSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       374 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      ......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus       268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            3344556888888899999999999999999999999875

>PLN03244 alpha-amylase; Provisional

Probab=83.04  E-value=1.4  Score=48.86  Aligned_cols=67  Identities=24%  Similarity=0.381  Sum_probs=44.5

Q ss_pred             CCCCCCCCceeeEEEE-ecCCCceEEEEEccCCCCCCCCCCcc----cCCCCeEEEEEE--cCCce-------EEEEEEE
Q 010821           16 EPASVPDTVLIPMRFV-WPYGGRSVFLSGSFNRWSELLPMSPV----EGCPTVFQIIWS--IPPGY-------HQYKFCV   81 (500)
Q Consensus        16 ~~~~~~~~~~~~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~----~~~~~~~~~~~~--L~~g~-------~~ykf~V   81 (500)
                      +-.|+.....--+.|. |..||+--+|+|+||||+++....|.    ...-|+|.+.++  |..|.       -+|.|.-
T Consensus       121 e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (872)
T PLN03244        121 EILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVD  200 (872)
T ss_pred             hhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhcccc
Confidence            3444444433345555 99999999999999999987433221    023589999986  77772       3666664


Q ss_pred             C
Q 010821           82 D   82 (500)
Q Consensus        82 D   82 (500)
                      |
T Consensus       201 ~  201 (872)
T PLN03244        201 D  201 (872)
T ss_pred             c
Confidence            4

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=82.94  E-value=4.1  Score=48.47  Aligned_cols=55  Identities=15%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC----CCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w   85 (500)
                      -++|. |...|++|.|+ -|+.|...    ++|..  +.+++|.+.+. +.+|. .|+|.|+|.|
T Consensus        24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~   84 (1221)
T PRK14510         24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG   84 (1221)
T ss_pred             eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence            36776 99999999998 89988643    45543  45799999876 77886 6999999854

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=82.85  E-value=6.8  Score=32.53  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             ceeeEEEEe-cCCCceEEEEEccCC--CCC-CCCCCcccCCC--CeEEEEEEcCCceEEEEEEE
Q 010821           24 VLIPMRFVW-PYGGRSVFLSGSFNR--WSE-LLPMSPVEGCP--TVFQIIWSIPPGYHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~-~~~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~L~~g~~~ykf~V   81 (500)
                      ..+.++++= ....++|.|.-.-+.  |.. ..+|.+....+  ..|+++++++.|.+.|.|.|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            456666663 334688888655443  232 46887753222  35999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	500
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-29
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		2e-19
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		4e-19
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		4e-19
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		4e-19
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-16
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		9e-16
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		5e-14
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		4e-08
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-07
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		3e-07
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		4e-07
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-06
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		1e-05
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		5e-05

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 159/341 (46%), Gaps = 52/341 (15%)
Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVG 223
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FVG
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVT-----NGVRAAPLWDSKKQSFVG 83
Query: 224 VLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
           +L+ +DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV  
Sbjct: 84  MLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCI 131
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
            PN +L D    ++ N++  +P+I   S +      L+I +   ILK             
Sbjct: 132 SPNASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK------------- 173
Query: 343 PILKLPICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDD 398
             LKL I   P   ++ K  E         +AM+R                  ++P+VD+
Sbjct: 174 -FLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE 232
Query: 399 NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSD 458
              ++DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +
Sbjct: 233 KGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHE 282
Query: 459 TLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           TL  ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 283 TLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 168/358 (46%), Gaps = 49/358 (13%)
Query: 146 EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRL 205
           ++ E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L + S   
Sbjct: 7   DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS--- 62
Query: 206 QGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYL 264
             I  APLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L
Sbjct: 63  --IVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERAL 117
Query: 265 N-RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 323
              Q+D+      RPL  A           K+L +    +P+I    QD    + + ++ 
Sbjct: 118 GVDQLDTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSV 165
Query: 324 LSG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXX 381
           L+   ILK V    R        LK+PI  + +      I + N +   M  P       
Sbjct: 166 LTQYRILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDV 212
Query: 382 XXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 441
                     S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +
Sbjct: 213 IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF 269
Query: 442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
                  +    C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 270 -------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 167/357 (46%), Gaps = 49/357 (13%)
Query: 147 AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQ 206
           + E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L + S    
Sbjct: 1   SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS---- 55
Query: 207 GISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN 265
            I  APLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L 
Sbjct: 56  -IVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALG 111
Query: 266 -RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASL 324
             Q+D+      RPL  A           K+L +    +P+I    QD    + + ++ L
Sbjct: 112 VDQLDTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVL 159
Query: 325 SG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXX 382
           +   ILK V    R        LK+PI  + +      I + N +   M  P        
Sbjct: 160 TQYRILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVI 206
Query: 383 XXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 442
                    S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D + 
Sbjct: 207 QMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF- 262
Query: 443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
                 +    C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 263 ------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 37/337 (10%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFV 222
           +  F+ + T+Y++LP S +++  D+ L VK +  +L      L  I  APLWD    +F 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLL-----TLNNIVSAPLWDSEANKFA 68
Query: 223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
           G+L+ +DF+ +++      S           I+   + +    R+++    A P   +Y 
Sbjct: 69  GLLTMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYV 121
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
            P  +L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  + 
Sbjct: 122 HPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET- 176
Query: 343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSL 402
            +L++P+  + +GTW           LA                     ++PIV+   +L
Sbjct: 177 AMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL 227
Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
           L++Y   D+  L +D  Y++++LS   + +AL     ++            C  +D L  
Sbjct: 228 LNVYESVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDG 277
Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           + + + +  V RL +V+   K +EGI+SL+DI  +++
Sbjct: 278 IFDAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 37/337 (10%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFV 222
           +  F+ + T+Y++LP S +++  D+ L VK +  +L      L  I  APLWD    +F 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLL-----TLNNIVSAPLWDSEANKFA 69
Query: 223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
           G+L+ +DF+ +++      S           I+   + +    R+++    A P   +Y 
Sbjct: 70  GLLTMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYV 122
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
            P  +L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  + 
Sbjct: 123 HPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET- 177
Query: 343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSL 402
            +L++P+  + +GTW           LA                     ++PIV+   +L
Sbjct: 178 AMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL 228
Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
           L++Y   D+  L +D  Y++++LS   + +AL     ++            C  +D L  
Sbjct: 229 LNVYESVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDG 278
Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           + + + +  V RL +V+   K +EGI+SL+DI  +++
Sbjct: 279 IFDAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 68  HDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+L    P       F  I  +P G HQYKF VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSKL----PXTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 68  HDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P    W  GG+ VF+SGSFN WS  +P+         F  I  +P G HQYKF VDG+W 
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSH---NDFVAILDLPEGEHQYKFFVDGQWV 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G +N ++   + +F
Sbjct: 68  HDPSEPVVTSQLGTINNLIHVKKSDF 93

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 23 TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
          ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 83 GEWRHDEHQPFISSEYG 99
           E R  +  P  + + G
Sbjct: 61 NELRVSDFLPTATDQMG 77

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
           S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +       +  
Sbjct: 44  SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF-------EGV 93
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 94  YTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
           S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +       +  
Sbjct: 44  SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALXRRSDDF-------EGV 93
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             C  +D L  + + +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 94  YTCTKNDKLSTIXDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 35  GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPGYHQYKFCVDGEWRHDEHQPF 93
           G   V +SG    W + +P++  +G  T F I+   +P G  +YK+ +DGEW H+E +PF
Sbjct: 180 GFSRVEISGLDIGWGQRIPLTLGKG--TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF 237
Query: 94  I--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQI 139
           I  + +    N   +  +P  + G  +   S  + ++  E   +L+Q 
Sbjct: 238 IGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQF 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	500
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-77
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-69
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-68
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	7e-36
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-33
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-28
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-28
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-08
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	5e-27
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	2e-25
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-04
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-14
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-12
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-04
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	5e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	5e-10
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-10
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-09
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-09
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-09
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-08
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-08
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-07
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	8e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-05

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  245 bits (626), Expect = 2e-77
 Identities = 74/348 (21%), Positives = 159/348 (45%), Gaps = 39/348 (11%)

Query: 153 EADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAP 212
           +   + +   +  F+ + T+Y++LP S +++  D+ L VK +  +L         I  AP
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTL-----NNIVSAP 59

Query: 213 LWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSH 271
           LWD    +F G+L+ +DF+ +++      S      E++   +   +E        ++  
Sbjct: 60  LWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLRE--------VERK 111

Query: 272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 331
             A P   +Y  P  +L D    +  +    +P+I    + GS   ++ + +   ILK +
Sbjct: 112 IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFI 170

Query: 332 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS 391
               +       +L++P+  + +GTW           LA       +   + +L +  +S
Sbjct: 171 SMNCKE----TAMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNIS 217

Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
           ++PIV+   +LL++Y   D+  L +D  Y++++L   ++ +AL     ++          
Sbjct: 218 AVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFDG-------V 267

Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
             C  +D L  + + + +  V RL +V+  + ++EGI+SL+DI  +++
Sbjct: 268 HTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  222 bits (568), Expect = 6e-69
 Identities = 81/355 (22%), Positives = 161/355 (45%), Gaps = 40/355 (11%)

Query: 145 TEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSR 204
           T+ ++     + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +    
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQN--- 61

Query: 205 LQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 264
              I  APLWD   +RF G+L+ +DFI +++   ++      E ++   +   K+ +  L
Sbjct: 62  --SIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERAL 117

Query: 265 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASL 324
                              P+  L +   K+L +    +P+I     +     ++ + + 
Sbjct: 118 GVD--------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDE-ETHREIVVSVLTQ 168

Query: 325 SGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNL 384
             ILK V    R        LK+PI  + + T            +   + +  +   + +
Sbjct: 169 YRILKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQM 215

Query: 385 LVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 444
           L Q +VSS+PI+D+N  L+++Y   D+  L K   Y  ++L   ++ +AL    D +   
Sbjct: 216 LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFEG- 271

Query: 445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
                    C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 272 ------VYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  221 bits (565), Expect = 2e-68
 Identities = 102/361 (28%), Positives = 169/361 (46%), Gaps = 42/361 (11%)

Query: 139 ISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 198
           ++  S        S+   + +    + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct: 4   VAAESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 63

Query: 199 YEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK 258
                   G+  APLWD  K  FVG+L+ +DFI IL       + +   ELE H I  W+
Sbjct: 64  VTN-----GVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWR 117

Query: 259 EGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQL 318
           E             +   +PLV   PN +L D    ++ N++  +P+I   S +      
Sbjct: 118 EVY----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN-----T 162

Query: 319 LHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL 378
           L+I +   ILK +  +          +   +  + +GT+           +AM+R +  +
Sbjct: 163 LYILTHKRILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPV 212

Query: 379 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 438
             AL + VQ +VS++P+VD+   ++DIY + D+  LA +K Y   N  ++++ +ALQ   
Sbjct: 213 YVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY---NNLDVSVTKALQHRS 269

Query: 439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498
             +            C   +TL  ++ RL    V RLV+V+     V+GIVSLSDI + L
Sbjct: 270 HYFEG-------VLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQAL 321

Query: 499 L 499
           +
Sbjct: 322 V 322

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  121 bits (307), Expect = 4e-33
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 20/157 (12%)

Query: 343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 402
             LK+PI  + + T            +   + +  +   + +L Q +VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
           +++Y   D+  L K   Y  ++L   ++ +AL    D +            C  +D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFEG-------VYTCTKNDKLST 104

Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  112 bits (280), Expect = 2e-28
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 8/156 (5%)

Query: 23  TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 83  GEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDG 142
            E R  +  P  + + G           N++          +      EA       SD 
Sbjct: 61  NELRVSDFLPTATDQMGNFV--------NYIEVRQPEKNPTNEKIRSKEADSMRPPTSDR 112

Query: 143 SLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPE 178
           S           D      R    LS     E   +
Sbjct: 113 SSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTD 148

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  111 bits (279), Expect = 8e-28
 Identities = 39/320 (12%), Positives = 105/320 (32%), Gaps = 51/320 (15%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELG 238
           + K+V +     +++A   + E           P+ +    + VG++++ D +  +    
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNEN-----KYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65

Query: 239 NHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN 298
            +     + E                 R+I          ++    N ++ +     L  
Sbjct: 66  KYNLIREKHERNFLAAINEPV------REIME------ENVITLKENADIDEAIETFLTK 113

Query: 299 EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358
            V   PI+   + +    QL+ + +   +++ +                           
Sbjct: 114 NVGGAPIV---NDEN---QLISLITERDVIRALLDKIDE--------------------N 147

Query: 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 418
             I +   R + +  P   L      +V+     +P+V +   L+ I   +D   L    
Sbjct: 148 EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSD 206

Query: 419 AYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV 478
              + ++    + +   +  +     ++ +         D L K+ E +    +  L +V
Sbjct: 207 WAFN-HMQTGNVREITNVRMEEIMKRDVIT-----AKEGDKLKKIAEIMVTNDIGALPVV 260

Query: 479 EAGSKRVEGIVSLSDIFKFL 498
           +   + ++GI++  D+ K+ 
Sbjct: 261 DENLR-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 20/143 (13%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAK 416
           V  +     + +  + P+ ++  AL  + + +   +P+V+  N+ ++ I    DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 417 DKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 476
                         H+   L   +    E+  +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 477 IVEAGSKRVEGIVSLSDIFKFLL 499
           IV   ++ +  +++  D+ + LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 36/238 (15%), Positives = 84/238 (35%), Gaps = 49/238 (20%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELG 238
              V+ L  +  + +A      +      +  AP+ +  + + + +++  D I       
Sbjct: 91  EENVITLKENADIDEAIETFLTK-----NVGGAPIVN-DENQLISLITERDVI------- 137

Query: 239 NHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN 298
                L ++  E   I  +                   R ++ A P + LKDVAR ++ N
Sbjct: 138 ---RALLDKIDENEVIDDYIT-----------------RDVIVATPGERLKDVARTMVRN 177

Query: 299 EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358
               +P++     +G   +L+ I + +  +K +       +         I  + +   +
Sbjct: 178 GFRRLPVV----SEG---RLVGIITSTDFIKLL-GSDWAFNHMQTGNVREITNVRMEEIM 229

Query: 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALA 415
                  +R +   +    L     ++V   + ++P+VD+N  +  I    D+    A
Sbjct: 230 -------KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYFA 280

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score =  103 bits (258), Expect = 5e-27
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 16  EPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYH 75
           E          P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----PMTRSQNNFVAILDLPEGEH 56

Query: 76  QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 112
           QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  104 bits (261), Expect = 2e-25
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 28/176 (15%)

Query: 1   MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGC 60
             +       +  A                +   G   V +SG    W + +P++  +G 
Sbjct: 146 KRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKG- 204

Query: 61  PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISS-EYGIVNTVLLATEPNFMHGINQG 119
              + +   +P G  +YK+ +DGEW H+E +PFI   + G  N                 
Sbjct: 205 TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA-------------- 250

Query: 120 MPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYEL 175
                   VD    +RL    D  L E             R ++  FL T +  E+
Sbjct: 251 KVVDDPTSVDGTTRERLSS-EDPELLE-----------EERSKLIQFLETCSEAEV 294

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 89.4 bits (222), Expect = 5e-20
 Identities = 33/322 (10%), Positives = 92/322 (28%), Gaps = 67/322 (20%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELG 238
                 L  +  +  AF  + E      GI    + +    +  G+L+  D +  +    
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEG-----GIGRIIVAN---EKIEGLLTTRDLLSTVESYC 78

Query: 239 NHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH 297
               +  +   + T  I  +                      V      +       ++ 
Sbjct: 79  KDSCSQGDLYHISTTPIIDYMT-----------------PNPVTVYNTSDEFTAINIMVT 121

Query: 298 NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357
               ++P++  + +       + I +    L                        PV  +
Sbjct: 122 RNFGSLPVVDINDK------PVGIVTEREFLLLYKDLDEI--------------FPVKVF 161

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAK 416
           +          +  +     L  A+ L+++     +P++DD++ ++ I    +    LAK
Sbjct: 162 M-------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK 214

Query: 417 DKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 476
                  +     + + +       +                ++++    +    +  L+
Sbjct: 215 AVDKLDPDYFYGKVVKDV----MVTNLV--------TIDELASVNRAAAEMIVKRIGSLL 262

Query: 477 IVEAGSKRVEGIVSLSDIFKFL 498
           I+   +  + GI++  D+   L
Sbjct: 263 ILNKDNT-IRGIITERDLLIAL 283

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 17/156 (10%), Positives = 49/156 (31%), Gaps = 31/156 (19%)

Query: 151 ISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISM 210
           ++E +                    +  S KV  +  ++ + QA  ++  +     G   
Sbjct: 140 VTEREF---LLLYKDLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRR-----GFRR 189

Query: 211 APLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDS 270
            P+ D    + VG+++  +    +++L      L  +      +             +  
Sbjct: 190 LPVID-DDNKVVGIVTVVN---AIKQLAKAVDKLDPDYFYGKVVKD-----------VMV 234

Query: 271 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 306
                   LV      ++   A +++   + ++ I+
Sbjct: 235 ------TNLVTIDELASVNRAAAEMIVKRIGSLLIL 264

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 67.9 bits (167), Expect = 5e-14
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 424
             +  +    +L+AA   + +  + ++PI  D+D L  +    DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 425 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
             E                              + ++ +++  +    VRR+ ++     
Sbjct: 76  AGELAR-------------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-- 114

Query: 484 RVEGIVSLSDIFKFL 498
           R+ GIV+ +DI + L
Sbjct: 115 RLVGIVTEADIARHL 129

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 424
                +  + ++  A+ ++ +  +  + + DDN + + +     I    + ++K    + 
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 425 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           +   M                    +          +  V   L+  G+ R  +V+    
Sbjct: 77  IRLVMR-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPG 116

Query: 484 RVEGIVSLSDIFKFL 498
           RV GIV+L+D+ ++L
Sbjct: 117 RVVGIVTLTDLSRYL 131

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSE-MT 429
           +  + S+  A+  +    V ++ +VD +  L+ +  R D+  A    +    + +   MT
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK--RVEG 487
                            R     +C   D +  + + L    +  L +++   K   V G
Sbjct: 89  -----------------RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 488 IVSLSDIFKFLL 499
            V+ +++ K L+
Sbjct: 132 RVTKTNMTKILV 143

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 23/136 (16%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHIN 424
            + L  ++PS S+  A  L+++  V S+ +++D+ +++  + +SDI   +        I 
Sbjct: 14  TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP 73

Query: 425 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 483
           +   MT                L +        +  L +V+ ++A   ++ ++I E G  
Sbjct: 74  VERIMT--------------RNLIT-----ANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 484 RVEGIVSLSDIFKFLL 499
           ++ GI +LSD+ +   
Sbjct: 113 KIVGIFTLSDLLEASR 128

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
           R+ L +++PS S+  AL LLV+ +V+ +P++DDN +L+ +    D+ AL      +  + 
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQ----M------CLPSDTLHKVMERLANPGVRRL 475
           +      +     +       ++        M         S  L      L     RRL
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 476 VIVEAGSKRVEGIVSLSDIFKFLL 499
            +V+    ++ GI++  ++ +  L
Sbjct: 133 PVVD-ADGKLIGILTRGNVVRAAL 155

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSA 227
           + +T  + +     +  +     V  A  +L E+      ++  P+ D      VGV+S 
Sbjct: 2   TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEK-----KVTGLPVID-DNWTLVGVVSD 55

Query: 228 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLVYAGPND 286
            D + +    G   ++         T   + E +  +++      G       +    + 
Sbjct: 56  YDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDST 115

Query: 287 NLKDVARKILHNEVATVPII 306
           NL+D AR +L  +   +P++
Sbjct: 116 NLEDAARLLLETKFRRLPVV 135

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALA 415
           V  + +   R +  + P  S+  A   L   ++ ++ + D +  +L I+   D+      
Sbjct: 26  VKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG 85

Query: 416 KDKAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 474
           +  A    ++S  MT                +       C  + T  ++ME +     R 
Sbjct: 86  QGAASLQQSVSVAMT--------------KNVVR-----CQHNSTTDQLMEIMTGGRFRH 126

Query: 475 LVIVEAGSKRVEGIVSLSDIFKFLL 499
           + + E G  R+ GI+S+ D+ K  +
Sbjct: 127 VPVEENG--RLAGIISIGDVVKARI 149

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 11/134 (8%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS--LLDIYCRSDITALAKDKAYAHIN 424
             +  L     L   + ++    V+  P+V+  +S  L+ I  R+ +    + +  +   
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
             +  +   L  G  +                  TLH+         ++ L +   G  R
Sbjct: 81  GHQQCLQDILARGCPT-------EPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG--R 131

Query: 485 VEGIVSLSDIFKFL 498
             G VS  ++ K +
Sbjct: 132 AVGCVSWVEMKKAI 145

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKD 417
           +  E  +RP   L  +A++      L + +V    +   D+    + +    DI      
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 418 KAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 476
           +                        SP           L +D +H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN------------SPI--------TVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 477 IVEAGSKRVEGIVSLSDIFKFLLG 500
           +V   +  + G++S+ D+      
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAI 128

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 425
             +  +  +ASL   L   V+    S  +V +    + I    D+  A+A+    A + +
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKV 67

Query: 426 SE-M-----TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 479
            E M     TI                         P  T+ +  E++    V RL++ E
Sbjct: 68  WEVMERDLVTIS------------------------PRATIKEAAEKMVKNVVWRLLVEE 103

Query: 480 AGSKRVEGIVSLSDIFKFLLG 500
                + G++S +DI +  + 
Sbjct: 104 DD--EIIGVISATDILRAKMA 122

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 22/133 (16%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
             +  +   A L+    ++ +  + S+ +VD  +  + I    DI               
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGKSLETKAE 70

Query: 427 E-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
           E MT                L +           +   +  +    +R L +V+     +
Sbjct: 71  EFMT--------------ASLIT-----IREDSPITGALALMRQFNIRHLPVVD-DKGNL 110

Query: 486 EGIVSLSDIFKFL 498
           +GI+S+ DI + +
Sbjct: 111 KGIISIRDITRAI 123

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 22/143 (15%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKD 417
           K    + R +  +  +  +  A+ L+ +  + ++ +VD +D +  I    D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 418 KAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 476
           ++     + E MT                    + +   PS +  + M  +    +R L 
Sbjct: 73  RSSKATRVEEIMT-------------------AKVRYVEPSQSTDECMALMTEHRMRHLP 113

Query: 477 IVEAGSKRVEGIVSLSDIFKFLL 499
           +++ G  ++ G++S+ D+ K ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALA 415
           V  + +     +  + P  S+  A+  +    + ++ ++ D + L+ I    D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 416 KDKAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 474
            DK      + E MT                   ++      ++T    M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIMT-------------------RQVAYVDLNNTNEDCMALITEMRVRH 107

Query: 475 LVIVEAGSKRVEGIVSLSDIFKFLL 499
           L +++ G  +V G++S+ D+ K  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
               ++     +   ++ +++  V+    V  ++ L+ +     +  ++    +  I   
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 427 EMTIHQALQLGQDSYSPYELRSQRCQM-----CLPSDTLHKVMERLANPGVRRLVIVEAG 481
           E+      +L   + S  E+      M           L + ++ + +  ++ + +V+  
Sbjct: 84  ELIRSSMKRLIAKNAS--EI------MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-E 134

Query: 482 SKRVEGIVSLSDIFKFLLG 500
              + G ++  +I   L  
Sbjct: 135 KGEIVGDLNSLEILLALWK 153

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 24 VLIPMRFVWPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++     WP   ++++L G F       + +  +E       +   + PG + Y F +D
Sbjct: 18 YIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEYGYGFQID 74

Query: 83 GEWR 86
           ++ 
Sbjct: 75 NDFE 78

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 431
           L  + +L+ A +L+    +  +PIVD N  LL I  + D+ A  +           +   
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFE 77

Query: 432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 491
             L          E+         P   L +    +    +  L +V      + GI++ 
Sbjct: 78  TPLF---------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLVGIITD 126

Query: 492 SDIFKFLL 499
           SD     +
Sbjct: 127 SDFVTIAI 134

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 20/133 (15%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
                +     S + A   L  +  +  P++D     L +   S +    K        L
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKL 70

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
            E  +                         P + L   +  +A      + + +    R 
Sbjct: 71  GEELLETVRSYR------------------PGEQLFDNLISVAAAKCSVVPLADE-DGRY 111

Query: 486 EGIVSLSDIFKFL 498
           EG+VS   I  FL
Sbjct: 112 EGVVSRKRILGFL 124

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 24/145 (16%), Positives = 60/145 (41%), Gaps = 37/145 (25%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINL 425
           + +   +    +  A   +++ ++SS+P++DD + ++ I   +DI   L +DK      +
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTI 75

Query: 426 SE-M-----TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRR 474
            + M     TIH                           ++ + ++++   G     + +
Sbjct: 76  GDVMTKDVITIH------------------------EDASILEAIKKMDISGKKEEIINQ 111

Query: 475 LVIVEAGSKRVEGIVSLSDIFKFLL 499
           L +V+  + ++ GI+S  DI + + 
Sbjct: 112 LPVVD-KNNKLVGIISDGDIIRTIS 135

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 34/135 (25%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEM--- 428
              + S+  A  +L++  ++ +PIVD++  L+ I    DI             + E+   
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN---KKTIEEIMTR 70

Query: 429 ---TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
              T H                          + +  V  +++   +  + +V+   +RV
Sbjct: 71  NVITAH------------------------EDEPVDHVAIKMSKYNISGVPVVD-DYRRV 105

Query: 486 EGIVSLSDIFKFLLG 500
            GIV+  DI +   G
Sbjct: 106 VGIVTSEDISRLFGG 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
           R + +++ + +L  A  L+++     + +VD     + I    DI      K+  +  + 
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVE 127

Query: 427 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 486
                                 +   +      L   ++ L       L +V++    + 
Sbjct: 128 IE----------------PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGN-LV 170

Query: 487 GIVSLSDIFK 496
           GIV  +D+ +
Sbjct: 171 GIVDETDLLR 180

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 24/128 (18%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 431
           +   A+ + AL L  + +V S P+V+    L+ I     I  +  D+      L+ +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPDEE----QLAMLVKR 68

Query: 432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 491
               + ++                  DTL K  + +     RR+V+V+    +  GI+++
Sbjct: 69  DVPVVKEN------------------DTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTV 109

Query: 492 SDIFKFLL 499
            DI +   
Sbjct: 110 GDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 38/238 (15%), Positives = 86/238 (36%), Gaps = 42/238 (17%)

Query: 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 336
           R +     ND LK  A+ +L  +   V ++     D    + + I ++  I++       
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVV-----DSKG-KPVGILTVGDIIRRY----- 116

Query: 337 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 396
                             G  +       +R ++++     L AAL  L+ +   ++P+V
Sbjct: 117 ----------FAKSEKYKGVEIEPYY---QRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 397 DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL- 455
           D   +L+ I   +D+  L   +    +  +E+      +   +S+          Q+   
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 456 --------------PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
                         P  T+H+V  ++A   + +L ++      + G++   D+ K L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 431
           +  SA++   L+ + Q Q +   + D       +  + D+  L  D +  +     +++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNK----VSLP 81

Query: 432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 491
                                     D +   +          L +V+    R++G VSL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 492 SDIFKFLL 499
            D  + L+
Sbjct: 122 HDFLEALI 129

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 371 MLRPSASLSAALNLLVQAQVSSIPIVDDNDS--LLDIYCRSDITALAKDKAYAHINLSEM 428
           + + S ++     ++ +   S  P+V   +S  L+    R D+    ++       +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 429 TIH--QALQLGQDSYSPYELR-----SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 481
           +I            Y+P  L+                 +  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 482 SKRVEGIVSLSDIFKFL 498
             R+ GI++  D+ K +
Sbjct: 149 --RLLGIITKKDVLKHI 163

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 424
              +A ++    L  AL +LV++  S+IP++D    L  +   + I   +   +      
Sbjct: 24  SEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFER 83

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L EM +              ++  Q   +    D+  K +E   +      +        
Sbjct: 84  LEEMKVE-------------QVMKQDIPVLKLEDSFAKALEMTID---HPFICAVNEDGY 127

Query: 485 VEGIVSLSDIFKFL 498
            EGI++   I K L
Sbjct: 128 FEGILTRRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 35/156 (22%)

Query: 181 KVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNH 240
           KV  + I   ++ A  +L +      G S  P+ D    +  G++S +    IL  +   
Sbjct: 26  KVAHVQIGNGLEHALLVLVKS-----GYSAIPVLD-PMYKLHGLISTAM---ILDGILGL 76

Query: 241 GSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEV 300
              +  E LE   +      +  + + I                 D+        + +  
Sbjct: 77  -ERIEFERLEEMKV------EQVMKQDI-----------PVLKLEDSFAKALEMTIDHPF 118

Query: 301 ATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 336
             +  +   ++DG       I +   ILK + +  R
Sbjct: 119 --ICAV---NEDG---YFEGILTRRAILKLLNKKVR 146

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 424
              +A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      
Sbjct: 23  ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEK 82

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L ++T+              E+          +D + K    + N      V VE   + 
Sbjct: 83  LDQITVE-------------EVMLTDIPRLHINDPIMKGFGMVIN---NGFVCVENDEQV 126

Query: 485 VEGIVSLSDIFKFL 498
            EGI +   + K L
Sbjct: 127 FEGIFTRRVVLKEL 140

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 424
              +A ++P   L  AL +L +   S+IP++D +  L  +   + +  A+   +      
Sbjct: 20  ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFER 79

Query: 425 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484
           L  M +              E+ ++        D+L K +  + N      V VE     
Sbjct: 80  LETMKV-------------EEVMNRNIPRLRLDDSLMKAVGLIVN---HPFVCVENDDGY 123

Query: 485 VEGIVSLSDIFKFL 498
             GI +  ++ K L
Sbjct: 124 FAGIFTRREVLKQL 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	500
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.97
3ddj_A	296	CBS domain-containing protein; structural genomics	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.95
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.9
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
3ddj_A	296	CBS domain-containing protein; structural genomics	99.87
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.86
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.85
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.85
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.81
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.79
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.75
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.75
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.74
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.73
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.73
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.73
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.72
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.71
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.71
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.71
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.7
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.7
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.7
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.69
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.69
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.69
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.69
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.69
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.69
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.68
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.68
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.66
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.65
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.65
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.65
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.65
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.65
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.65
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.64
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.63
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.63
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.62
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.62
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.61
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.61
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.59
4esy_A	170	CBS domain containing membrane protein; structural	99.59
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.58
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.57
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.57
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.56
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.56
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.56
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.55
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.55
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.55
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.55
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.55
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.54
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.54
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.54
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.54
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.54
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.53
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.53
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.53
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.51
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.51
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.51
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.5
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.5
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.5
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.5
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.5
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.49
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.49
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.49
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.48
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.47
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.47
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.46
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.46
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.45
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.45
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.45
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.44
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.43
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.42
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.42
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.38
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.37
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.31
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.28
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.27
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.27
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.25
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.25
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.24
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.16
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.1
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.1
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.1
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.02
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.02
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.99
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.95
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.79
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.76
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.65
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.48
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.42
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.37
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.91
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	97.72
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.49
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.4
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.39
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.35
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.11
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.97
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.84
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.76
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.58
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.55
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.39
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.22
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.09
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	94.7
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	94.46
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	94.36
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	93.89
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	93.51
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.49
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	93.4
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	93.4
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	93.08
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.78
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	92.76
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	91.57
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	91.22
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	89.97
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	88.32
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	87.59
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	86.79
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	86.65

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=8.8e-39  Score=320.76  Aligned_cols=310  Identities=25%  Similarity=0.437  Sum_probs=248.8

Q ss_pred             cchHHHHHHHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHH
Q 010821          151 ISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDF  230 (500)
Q Consensus       151 ~~~~~~~~~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Di  230 (500)
                      ..+.+.....+++.+||+.++|||+||.+.++++++.+.|+++|++.|.++     +++++||||.+.++++|++|..||
T Consensus        11 ~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~-----~~~~~pV~d~~~~~lvGilt~~Dl   85 (323)
T 3t4n_C           11 KVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQN-----SIVSAPLWDSKTSRFAGLLTTTDF   85 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHT-----TCSCEEEEETTTTEEEEEECHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHc-----CCceEEEEeCCCCeEEEEEEHHHH
Confidence            445666678899999999999999999999999999999999999999999     999999999887899999999999


Q ss_pred             HHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCC
Q 010821          231 ILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS  310 (500)
Q Consensus       231 i~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~  310 (500)
                      +.++.++...+..  .+.++.+....+++.....        ..+.++++++.+++++.+|++.|.+++++++||++.+.
T Consensus        86 ~~~l~~~~~~~~~--~~~l~~~~~~~v~~i~~~~--------~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~  155 (323)
T 3t4n_C           86 INVIQYYFSNPDK--FELVDKLQLDGLKDIERAL--------GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDE  155 (323)
T ss_dssp             HHHHHHHHHCGGG--GGGGGGCBHHHHHHHHHHT--------TC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECT
T ss_pred             HHHHHHHHcCcch--hHHHHHHHHHHHHHHHHHh--------CCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCC
Confidence            9988766543321  2456666666777665432        24678899999999999999999999999999996432


Q ss_pred             CCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCC
Q 010821          311 QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQV  390 (500)
Q Consensus       311 ~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~  390 (500)
                      ..+ .++++|++|.+||++++..+...    ......++.++.++         |.++++++.+++++.+|+++|.++++
T Consensus       156 ~~~-~~~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~  221 (323)
T 3t4n_C          156 ETH-REIVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRV  221 (323)
T ss_dssp             TTC-CEEEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             CCC-ccceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCC
Confidence            222 12399999999999998765433    12233444444221         66789999999999999999999999


Q ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcC
Q 010821          391 SSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANP  470 (500)
Q Consensus       391 ~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~  470 (500)
                      +++||+|++|+++|+||.+|+++.+..+.+..   ...++.++|.....       ...++++|.+++++.+|+++|.++
T Consensus       222 ~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~---~~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~  291 (323)
T 3t4n_C          222 SSVPIIDENGYLINVYEAYDVLGLIKGGIYND---LSLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKA  291 (323)
T ss_dssp             SEEEEECTTCBEEEEEETTHHHHHHHTTHHHH---TTSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHS
T ss_pred             CEEEEECCCCeEEEEEeHHHHHHHHhhchhhh---ccCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHh
Confidence            99999999999999999999998776543322   24688887743110       012789999999999999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          471 GVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       471 ~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      +++++||||+ +|+++|+||.+||++++++
T Consensus       292 ~~~~l~Vvd~-~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          292 RVHRFFVVDD-VGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            9999999995 7999999999999999863

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=2.6e-33  Score=282.19  Aligned_cols=305  Identities=22%  Similarity=0.436  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHH
Q 010821          154 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILI  233 (500)
Q Consensus       154 ~~~~~~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~i  233 (500)
                      .+.....+.+.+||...+++|+|+.+.++++++.+.|+.+|++.|.++     +++++||||.+.++++|+++..|++.+
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~-----~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN-----NIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-----TCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHc-----CCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            445667889999999999999999999999999999999999999999     999999999877899999999999988


Q ss_pred             HHHhcCCCCCC-ChhhhcccchhHHHHHHHhhccccCCCCcccCCCc--eecCCCCcHHHHHHHHHhcCCceeeEEecCC
Q 010821          234 LRELGNHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPL--VYAGPNDNLKDVARKILHNEVATVPIIHSSS  310 (500)
Q Consensus       234 l~~~~~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~--v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~  310 (500)
                      +.......... ..+.+...++..+++....+          |.+++  +++.+++++.+|++.|.+++++++||++.  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~i----------m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--  148 (334)
T 2qrd_G           81 IKYYYQSSSFPEAIAEIDKFRLLGLREVERKI----------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--  148 (334)
T ss_dssp             HHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHH----------TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--
T ss_pred             HHHHhhccCCccHHHHHhhhchhhHHHHHHhh----------ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--
Confidence            76543210000 11244456677777665432          44555  99999999999999999999999999953  


Q ss_pred             CCC-CCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCC
Q 010821          311 QDG-SFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ  389 (500)
Q Consensus       311 ~~~-~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~  389 (500)
                      ..+ ....++|++|.+||++++......    ......+++++         ..+|.++++++.+++++.+|++.|.+++
T Consensus       149 ~~~~~~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~  215 (334)
T 2qrd_G          149 DGETGSEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKN  215 (334)
T ss_dssp             ETTTTEEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             CCCcCccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcC
Confidence            222 011399999999999988754221    11122333332         1137788999999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhc
Q 010821          390 VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLAN  469 (500)
Q Consensus       390 ~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~  469 (500)
                      ++++||+|++|+++|+||.+|+++....+.+.   ....++.++|.....     +  .+++++|++++++.+|+++|.+
T Consensus       216 ~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~---~~~~~v~~~m~~~~~-----~--~~~~~~v~~~~~l~~~~~~m~~  285 (334)
T 2qrd_G          216 ISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS---NLDLSVGEALLKRPA-----N--FDGVHTCRATDRLDGIFDAIKH  285 (334)
T ss_dssp             CSEEEEECTTCBEEEEEETHHHHHHHTTSCGG---GGGSBHHHHHTTCCT-----T--CCCCCEECTTCBHHHHHHHHHH
T ss_pred             CcEEEEEcCCCcEEEEEEHHHHHHHhhccccc---cccCcHHHHHhcccc-----c--CCCCEEECCCCcHHHHHHHHHH
Confidence            99999999889999999999999876654322   124678887732100     0  0478999999999999999999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          470 PGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       470 ~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ++++++||||+ +|+++|+||++||++++.
T Consensus       286 ~~~~~l~Vvd~-~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          286 SRVHRLFVVDE-NLKLEGILSLADILNYII  314 (334)
T ss_dssp             SCCCEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             cCCCEEEEECC-CCeEEEEEeHHHHHHHHH
Confidence            99999999995 799999999999999875

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=2.5e-33  Score=281.93  Aligned_cols=299  Identities=32%  Similarity=0.567  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHh
Q 010821          158 VSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILREL  237 (500)
Q Consensus       158 ~~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~  237 (500)
                      ..++.++.||+..+++|+|+.+.++++++.+.|+.+|++.|.++     +++.+||+|.+.++++|+++..|++.++...
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~-----~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~   97 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGMLTITDFINILHRY   97 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-----TCSEEEEEETTTTEEEEEEEHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHc-----CCcEEEEEeCCCCeEEEEEEHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999     9999999998768999999999999877653


Q ss_pred             cCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCce
Q 010821          238 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  317 (500)
Q Consensus       238 ~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~  317 (500)
                      ...+. .....++...+..|.+...          .+|.++++++.+++++.+|+++|.+++++++||++  ++++   +
T Consensus        98 ~~~~~-~~~~~l~~~~~~~~~~~~~----------~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~---~  161 (330)
T 2v8q_E           98 YKSAL-VQIYELEEHKIETWREVYL----------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---N  161 (330)
T ss_dssp             HHHHT-TTCCCGGGCBHHHHHHHHS----------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---C
T ss_pred             Hhccc-cchhHHhhccHHHHHHHHh----------hcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe--CCCC---c
Confidence            21111 1112344555666654332          34788899999999999999999999999999993  3246   7


Q ss_pred             EEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CCceEecCCCCHHHHHHHHHHCCCCEEEEE
Q 010821          318 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIV  396 (500)
Q Consensus       318 liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVv  396 (500)
                      ++|++|.+||++++........ ....+..++.++.+          |. ++++++.+++++.+|++.|.+++++++||+
T Consensus       162 ~~Givt~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  230 (330)
T 2v8q_E          162 TLYILTHKRILKFLKLFITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVV  230 (330)
T ss_dssp             EEEEECHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEEEcHHHHHHHHHHHhhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEE
Confidence            9999999999998876533211 01223344444432          32 578899999999999999999999999999


Q ss_pred             cCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEE
Q 010821          397 DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV  476 (500)
Q Consensus       397 d~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~  476 (500)
                      |++|+++|+||.+|+++......+..   ...++.+++..+.       .|.+++++|.+++++.+|+++|.+++++++|
T Consensus       231 d~~~~l~Giit~~dl~~~~~~~~~~~---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~  300 (330)
T 2v8q_E          231 DEKGRVVDIYSKFDVINLAAEKTYNN---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLV  300 (330)
T ss_dssp             CTTSBEEEEEEGGGTGGGGGSSCCCC---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEEEHHHHHHHHhcccccc---ccCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEE
Confidence            98999999999999998655432221   2478888874322       3567899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHhh
Q 010821          477 IVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       477 VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      |+|+ +|+++|+||.+||++++.
T Consensus       301 Vvd~-~g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          301 VVDE-HDVVKGIVSLSDILQALV  322 (330)
T ss_dssp             EECT-TSBEEEEEEHHHHHHHHH
T ss_pred             EEcC-CCcEEEEEeHHHHHHHHH
Confidence            9995 799999999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.97  E-value=2.7e-30  Score=252.91  Aligned_cols=269  Identities=14%  Similarity=0.307  Sum_probs=206.7

Q ss_pred             cccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhc
Q 010821          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  250 (500)
Q Consensus       171 ~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~  250 (500)
                      ++.+.+... ++++++.+.|+.+|++.|.++     ++.++||+|.+.++++|++|..|++.++.....      ...++
T Consensus         4 ~v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~-----~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~   71 (280)
T 3kh5_A            4 RVMKIAQNK-KIVTVYPTTTIRKALMTMNEN-----KYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIR   71 (280)
T ss_dssp             BGGGTSCCS-CCCCBCTTSBHHHHHHHHHHH-----CCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHH
T ss_pred             hHHHHhcCC-CcEEECCCCcHHHHHHHHHhC-----CCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhh
Confidence            344555443 799999999999999999999     999999999767899999999999976532110      01111


Q ss_pred             ccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHH
Q 010821          251 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  330 (500)
Q Consensus       251 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~  330 (500)
                      ..........   .   ....+.+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+|++++
T Consensus        72 ~~~~~~~~~~---~---~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~  139 (280)
T 3kh5_A           72 EKHERNFLAA---I---NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVN---DEN---QLISLITERDVIRA  139 (280)
T ss_dssp             TTSTTCHHHH---T---TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHHHH
T ss_pred             hccccchhHH---h---hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEc---CCC---EEEEEEEHHHHHHH
Confidence            1111111000   0   1122345778899999999999999999999999999993   345   79999999999988


Q ss_pred             HHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHH
Q 010821          331 VCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD  410 (500)
Q Consensus       331 l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~D  410 (500)
                      +......        ..+            ++++|.+++.++.+++++.++++.|.+++++.+||+ ++|+++|+||.+|
T Consensus       140 ~~~~~~~--------~~~------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~d  198 (280)
T 3kh5_A          140 LLDKIDE--------NEV------------IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTD  198 (280)
T ss_dssp             HGGGSCT--------TCB------------SGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHH
T ss_pred             HhhcCCC--------CCC------------HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHH
Confidence            7643211        112            344588889999999999999999999999999999 6899999999999


Q ss_pred             HHHHHHcccc-ccc------CcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCC
Q 010821          411 ITALAKDKAY-AHI------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK  483 (500)
Q Consensus       411 i~~~~~~~~~-~~~------~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g  483 (500)
                      +++....+.. ..+      .....++.+             +|.+++++|++++++.+|+++|.+++++++||+|+ +|
T Consensus       199 l~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g  264 (280)
T 3kh5_A          199 FIKLLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE-NL  264 (280)
T ss_dssp             HHHHHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT-TC
T ss_pred             HHHHHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC-CC
Confidence            9987643211 000      012345555             45778999999999999999999999999999995 68


Q ss_pred             eEEEEEehHHHHHHh
Q 010821          484 RVEGIVSLSDIFKFL  498 (500)
Q Consensus       484 ~liGiIS~~DIl~~l  498 (500)
                      +++|+||++||++++
T Consensus       265 ~~~Givt~~dil~~l  279 (280)
T 3kh5_A          265 RIKGIITEKDVLKYF  279 (280)
T ss_dssp             BEEEEEEHHHHGGGG
T ss_pred             eEEEEEeHHHHHHhh
Confidence            999999999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=2.4e-29  Score=248.81  Aligned_cols=262  Identities=11%  Similarity=0.144  Sum_probs=205.4

Q ss_pred             ccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhh
Q 010821          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL  249 (500)
Q Consensus       170 ~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l  249 (500)
                      .++.|++.  .++++++.+.|+.+|++.|.++     ++..+||+|   ++++|++|..|++..+......         
T Consensus        20 ~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~-----~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~---------   80 (296)
T 3ddj_A           20 MNIETLMI--KNPPILSKEDRLGSAFKKINEG-----GIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD---------   80 (296)
T ss_dssp             SSGGGTCE--ESCCEECTTSBHHHHHHHTTGG-----GCCEEEEES---SSEEEEEEHHHHHGGGTTCC-----------
T ss_pred             cCHHHhcc--CCCcEECCCccHHHHHHHHHHC-----CCceEEEEC---CeEEEEEeHHHHHHHhcccccc---------
Confidence            34556664  3799999999999999999999     999999998   7999999999999765321100         


Q ss_pred             cccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHH
Q 010821          250 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  329 (500)
Q Consensus       250 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~  329 (500)
                       ......+....      ....+.+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++
T Consensus        81 -~~~~~~~~~~~------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd---~~~---~lvGivt~~dl~~  147 (296)
T 3ddj_A           81 -SCSQGDLYHIS------TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD---IND---KPVGIVTEREFLL  147 (296)
T ss_dssp             --CCHHHHHHHH------TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHGG
T ss_pred             -cccchhhHHHh------cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHH
Confidence             00111111111      1123345778899999999999999999999999999993   345   7999999999987


Q ss_pred             HHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHH
Q 010821          330 CVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS  409 (500)
Q Consensus       330 ~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~  409 (500)
                      ++....         ...++            +++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+
T Consensus       148 ~~~~~~---------~~~~v------------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~  206 (296)
T 3ddj_A          148 LYKDLD---------EIFPV------------KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVV  206 (296)
T ss_dssp             GGGGSC---------CCCBH------------HHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             hhhccc---------ccccH------------HHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence            553211         11233            344888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccccc---CcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEE
Q 010821          410 DITALAKDKAYAHI---NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE  486 (500)
Q Consensus       410 Di~~~~~~~~~~~~---~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~li  486 (500)
                      |++....... ..+   .....++.++             |.+++++|.+++++.+|+++|.+++++++||+|+ +|+++
T Consensus       207 dl~~~~~~~~-~~~~~~~~~~~~v~~~-------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~  271 (296)
T 3ddj_A          207 NAIKQLAKAV-DKLDPDYFYGKVVKDV-------------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIR  271 (296)
T ss_dssp             HHHHHHHHHH-HHTCTHHHHTCBHHHH-------------SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEE
T ss_pred             HHHHHHHHHH-hhcChhhhcCcCHHHH-------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEE
Confidence            9998665321 110   0123566664             4778999999999999999999999999999995 79999


Q ss_pred             EEEehHHHHHHhh
Q 010821          487 GIVSLSDIFKFLL  499 (500)
Q Consensus       487 GiIS~~DIl~~l~  499 (500)
                      |+||++||++++.
T Consensus       272 Giit~~Dil~~l~  284 (296)
T 3ddj_A          272 GIITERDLLIALH  284 (296)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEcHHHHHHHHH
Confidence            9999999999875

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=2.5e-27  Score=232.29  Aligned_cols=243  Identities=18%  Similarity=0.323  Sum_probs=177.3

Q ss_pred             cceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHH
Q 010821          180 GKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKE  259 (500)
Q Consensus       180 ~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~  259 (500)
                      .++++++.+.|+.+|++.|.++     ++..+||+|. .++++|+++..|++..+..               .+      
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~-----~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~---------------~~------   61 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKY-----KVRSFPVVNK-EGKLVGIISVKRILVNPDE---------------EQ------   61 (282)
T ss_dssp             ESCCCEESSCC-----------------CCEEEEECT-TCCEEEEEESSCC-----------------------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHc-----CCCeEEEEcC-CCcEEEEEEHHHHHhhhcc---------------CC------
Confidence            4688899999999999999999     9999999986 4799999999997743210               00      


Q ss_pred             HHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHH-HHHhhcccC
Q 010821          260 GKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHC  338 (500)
Q Consensus       260 ~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~-~l~~~~~~~  338 (500)
                                 ...++.++++++.+++++.+|++.|.+++++++||++   +++   +++|++|..|+++ ++...  . 
T Consensus        62 -----------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd---~~~---~~~Giit~~di~~~~~~~~--~-  121 (282)
T 2yzq_A           62 -----------LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD---SKG---KPVGILTVGDIIRRYFAKS--E-  121 (282)
T ss_dssp             -------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTTC--S-
T ss_pred             -----------HHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhcc--C-
Confidence                       0123566788999999999999999999999999993   335   7999999999997 55421  0 


Q ss_pred             CCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH------
Q 010821          339 SSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT------  412 (500)
Q Consensus       339 ~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~------  412 (500)
                          .....            +++++|.++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|++      
T Consensus       122 ----~~~~~------------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~  185 (282)
T 2yzq_A          122 ----KYKGV------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIV  185 (282)
T ss_dssp             ----GGGGC------------BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGC
T ss_pred             ----CcccC------------cHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhh
Confidence                00111            34566888899999999999999999999999999999889999999999998      


Q ss_pred             HHHHc------c--------ccc------ccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCC
Q 010821          413 ALAKD------K--------AYA------HINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGV  472 (500)
Q Consensus       413 ~~~~~------~--------~~~------~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~  472 (500)
                      +....      .        ...      .......++             .++|.+++++|++++++.+|+++|.++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~  252 (282)
T 2yzq_A          186 RIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPV-------------AEIMTRDVIVATPHMTVHEVALKMAKYSI  252 (282)
T ss_dssp             C--------------------------------CCCBG-------------GGTCBSSCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             hhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCH-------------HHhcCCCCceeCCCCCHHHHHHHHHHcCc
Confidence            32210      0        000      000011222             24778899999999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          473 RRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       473 ~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      +++||+|+ +|+++|+||++||++++.
T Consensus       253 ~~lpVvd~-~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          253 EQLPVIRG-EGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             SEEEEEET-TTEEEEEEEHHHHGGGGC
T ss_pred             ceeEEECC-CCCEEEEEeHHHHHHHHH
Confidence            99999995 689999999999998874

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=1e-24  Score=177.67  Aligned_cols=88  Identities=43%  Similarity=0.871  Sum_probs=78.9

Q ss_pred             CCCceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 010821           21 PDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI  100 (500)
Q Consensus        21 ~~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~  100 (500)
                      +++..+|++|+|.++|++|+|+|+||+|+ ..+|.+.   .|.|+++++|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            45677999999999999999999999999 6789873   4899999999999999999999999999999999999999


Q ss_pred             eeeEEEeccCCC
Q 010821          101 VNTVLLATEPNF  112 (500)
Q Consensus       101 ~nn~l~v~~~~~  112 (500)
                      .||+|.|.+.+.
T Consensus        82 ~Nnvi~V~~~d~   93 (96)
T 1z0n_A           82 VNNIIQVKKTDF   93 (96)
T ss_dssp             EEEEEEECSCTT
T ss_pred             EeEEEEEcCCCc
Confidence            999999987764

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.90  E-value=3.7e-24  Score=203.77  Aligned_cols=90  Identities=24%  Similarity=0.610  Sum_probs=81.6

Q ss_pred             ceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 010821           24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT  103 (500)
Q Consensus        24 ~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn  103 (500)
                      .++|++|+|+++|++|+|+|||++|++.++|.|.++.+|.|++++.|+||.|+|||+|||+|++||.+|++.|++|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            46999999999999999999999999888999865567999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCC
Q 010821          104 VLLATEPNFM  113 (500)
Q Consensus       104 ~l~v~~~~~~  113 (500)
                      +|.|.+++..
T Consensus        82 vi~V~~~~~~   91 (252)
T 2qlv_B           82 YIEVRQPEKN   91 (252)
T ss_dssp             EEEECC----
T ss_pred             eeeccCcccc
Confidence            9999887544

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=1.1e-22  Score=198.86  Aligned_cols=195  Identities=18%  Similarity=0.313  Sum_probs=156.3

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccc-ccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL-PICAI  352 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~-~v~~l  352 (500)
                      +|.++++++.+++|+.+|+++|.+++++++||++  ++++   +++|++|.+||++++......     ..+.. ....+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d--~~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN--AGNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEEC--TTTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEE--CCCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            4777899999999999999999999999999993  3356   899999999999876432111     00000 00000


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ  432 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  432 (500)
                       +.....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......     ...++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID-----ENEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC-----TTCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC-----CCCCHHH
Confidence             0111235677799899999999999999999999999999999999999999999999987654322     1235554


Q ss_pred             HHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          433 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       433 ~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                   +|.+++.++.+++++.+|++.|.+++.+++||++  +|+++|+||.+||++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         5577899999999999999999999999999996  699999999999998863

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=4.2e-22  Score=196.75  Aligned_cols=190  Identities=18%  Similarity=0.235  Sum_probs=155.0

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||+  +   +   +++|++|..||++++......        ....+.+
T Consensus        24 dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~--d---~---~l~GivT~~Di~~~~~~~~~~--------~~~~~~~   87 (296)
T 3ddj_A           24 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--N---E---KIEGLLTTRDLLSTVESYCKD--------SCSQGDL   87 (296)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEE--S---S---SEEEEEEHHHHHGGGTTCC-----------CCHHHH
T ss_pred             HhccCCCcEECCCccHHHHHHHHHHCCCceEEEE--C---C---eEEEEEeHHHHHHHhcccccc--------cccchhh
Confidence            3577789999999999999999999999999999  3   5   799999999999876432110        0001000


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ  432 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  432 (500)
                       +.....+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++......      ....++.+
T Consensus        88 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~------~~~~~v~~  160 (296)
T 3ddj_A           88 -YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL------DEIFPVKV  160 (296)
T ss_dssp             -HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGS------CCCCBHHH
T ss_pred             -HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcc------cccccHHH
Confidence             00011245677988999999999999999999999999999999999999999999998765432      12457887


Q ss_pred             HHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          433 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       433 ~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      +|             .+++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++.
T Consensus       161 ~m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          161 FM-------------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HS-------------BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             hh-------------cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            54             678999999999999999999999999999995 799999999999998763

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.86  E-value=7.9e-22  Score=194.14  Aligned_cols=86  Identities=24%  Similarity=0.458  Sum_probs=79.1

Q ss_pred             CceeeEEEEecC-CCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCee-eCCCCC
Q 010821           23 TVLIPMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFI-SSEYGI  100 (500)
Q Consensus        23 ~~~~~~~f~~~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~-~~~~g~  100 (500)
                      ....|++|+|++ +|++|+|+||||||+..+||.|.+ ++|.|+++++||||+|+|||+|||+|++||++|.+ +|++|+
T Consensus       167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~  245 (294)
T 3nme_A          167 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGH  245 (294)
T ss_dssp             CCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSC
T ss_pred             cccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCC
Confidence            456899999999 789999999999999878999853 47999999999999999999999999999999975 899999


Q ss_pred             eeeEEEecc
Q 010821          101 VNTVLLATE  109 (500)
Q Consensus       101 ~nn~l~v~~  109 (500)
                      +||+|.|.+
T Consensus       246 ~nn~~~v~~  254 (294)
T 3nme_A          246 TNNYAKVVD  254 (294)
T ss_dssp             CEEEEEECC
T ss_pred             EeEEEEECC
Confidence            999999986

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.85  E-value=4.4e-21  Score=192.50  Aligned_cols=205  Identities=17%  Similarity=0.261  Sum_probs=159.4

Q ss_pred             cc--CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          274 AF--PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       274 ~~--~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +|  ..+++++++++++.+|++.|.+++++++||++  .+.+   +++|++|.+|++..+...+.....    ....+..
T Consensus        40 im~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d--~~~~---~~vGivt~~Dll~~l~~~~~~~~~----~~~~l~~  110 (330)
T 2v8q_E           40 LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD--SKKQ---SFVGMLTITDFINILHRYYKSALV----QIYELEE  110 (330)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE--TTTT---EEEEEEEHHHHHHHHHHHHHHHTT----TCCCGGG
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHHhcccc----chhHHhh
Confidence            56  67899999999999999999999999999995  3335   799999999999887654321000    0011222


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHccccc--ccCcccc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYA--HINLSEM  428 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~--~~~~~~~  428 (500)
                      ..+..+...++++|.++++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||.+|+++........  ...+...
T Consensus       111 ~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~  190 (330)
T 2v8q_E          111 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSK  190 (330)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGS
T ss_pred             ccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcC
Confidence            23333444567789999999999999999999999999999999998 89999999999999866432110  0011234


Q ss_pred             cHHHHHhcCCCCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          429 TIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       429 ~v~~~l~~~~~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ++.++.           +|. +++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus       191 ~v~~~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          191 SLEELQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             BHHHHT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGG
T ss_pred             CHHHhc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHh
Confidence            555542           344 68899999999999999999999999999995 799999999999988653

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.85  E-value=1e-20  Score=189.17  Aligned_cols=202  Identities=12%  Similarity=0.223  Sum_probs=151.7

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      ..++++++.++|+.+|++.|.+++++++||++  ++.+   +++|++|.+|++.++...+....    .. ..+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d--~~~~---~lvGilt~~Dl~~~l~~~~~~~~----~~-~~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWD--SKTS---RFAGLLTTTDFINVIQYYFSNPD----KF-ELVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEE--TTTT---EEEEEECHHHHHHHHHHHHHCGG----GG-GGGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEe--CCCC---eEEEEEEHHHHHHHHHHHHcCcc----hh-HHHHHHHHH
Confidence            34689999999999999999999999999994  4445   79999999999998765432210    00 011111111


Q ss_pred             ccC--cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHHcccccccCcccc
Q 010821          356 TWV--PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS-----LLDIYCRSDITALAKDKAYAHINLSEM  428 (500)
Q Consensus       356 ~~~--~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~-----lvGiis~~Di~~~~~~~~~~~~~~~~~  428 (500)
                      .+.  .++.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|++......... ......
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            111  0234557788999999999999999999999999999998775     99999999999866432211 112345


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          429 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       429 ~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ++.+++          -.|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++.
T Consensus       188 ~v~~~~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          188 PIGDLN----------IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             BGGGTT----------CSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHH
T ss_pred             cHHHcC----------CCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHh
Confidence            666541          015778999999999999999999999999999995 799999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.81  E-value=5.5e-20  Score=179.94  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=129.9

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++  + ++   +++|+++..||++.+.             ..      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d--~-~~---~~~Giv~~~dl~~~~~-------------~~------   60 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVN--K-EG---KLVGIISVKRILVNPD-------------EE------   60 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEEC--T-TC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEc--C-CC---cEEEEEEHHHHHhhhc-------------cC------
Confidence            3667889999999999999999999999999993  2 45   7999999999985321             11      


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHHcccccccCcccccHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQ  432 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~  432 (500)
                            +++++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++ ....+..    ....++.+
T Consensus        61 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~~v~~  130 (282)
T 2yzq_A           61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK----YKGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG----GGGCBSTT
T ss_pred             ------CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC----cccCcHHH
Confidence                  345558878899999999999999999999999999998899999999999987 5543210    11234443


Q ss_pred             HHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 010821          433 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  495 (500)
Q Consensus       433 ~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl  495 (500)
                                   +|..+++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||+
T Consensus       131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLL  179 (282)
T ss_dssp             -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGG
T ss_pred             -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHh
Confidence                         56778999999999999999999999999999995 68999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.81  E-value=1.8e-19  Score=180.97  Aligned_cols=204  Identities=12%  Similarity=0.156  Sum_probs=150.3

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++++++++.+|++.|.+++++++||++  .+.+   +++|+++.+||++++...+..... ...+ ..+...++..
T Consensus        32 ~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d--~~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~~~  104 (334)
T 2qrd_G           32 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD--SEAN---KFAGLLTMADFVNVIKYYYQSSSF-PEAI-AEIDKFRLLG  104 (334)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEE--TTTT---EEEEEECHHHHHHHHHHHHHHCSC-GGGG-GGGGSCBHHH
T ss_pred             CCEEEEcCCCCHHHHHHHHHHcCCeEEEEEe--CCCC---eEEEEEEHHHHHHHHHHHhhccCC-ccHH-HHHhhhchhh
Confidence            3588999999999999999999999999994  3435   799999999999887543221000 0000 0111111111


Q ss_pred             cCcccCCCCCCCc--eEecCCCCHHHHHHHHHHCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHHcccccccCccccc
Q 010821          357 WVPKIGEPNRRPL--AMLRPSASLSAALNLLVQAQVSSIPIVDDND-S----LLDIYCRSDITALAKDKAYAHINLSEMT  429 (500)
Q Consensus       357 ~~~~v~d~m~~~~--~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g-~----lvGiis~~Di~~~~~~~~~~~~~~~~~~  429 (500)
                      +....+++|.+++  +++.+++++.+|++.|.+++++++||+|++| +    ++|++|.+|++........ ...+...+
T Consensus       105 i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~-~~~~~~~~  183 (334)
T 2qrd_G          105 LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK-ETAMLRVP  183 (334)
T ss_dssp             HHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG-GGGGCCCB
T ss_pred             HHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc-chhhhhCc
Confidence            1111123355566  8999999999999999999999999999765 4    9999999999986643211 11122345


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      +.++.          .+|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus       184 v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          184 LNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHT
T ss_pred             HHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhh
Confidence            55421          136788999999999999999999999999999995 699999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.79  E-value=1.1e-19  Score=164.76  Aligned_cols=125  Identities=22%  Similarity=0.350  Sum_probs=103.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc------c----------
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------I----------  423 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~----------  423 (500)
                      +|+++|+++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.........      .          
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            456669999999999999999999999999999999999999999999999976432110000      0          


Q ss_pred             --CcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          424 --NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       424 --~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                        .....++.             ++|++++++|++++++.+|+++|.+++++++||+|  +|+++|+||++||+++|+
T Consensus        99 ~~~~~~~~v~-------------~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           99 FETGRKLTAS-------------AVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHTTCBHH-------------HHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSC
T ss_pred             hccccccchh-------------hhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence              00112333             36789999999999999999999999999999999  599999999999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.75  E-value=6.4e-18  Score=145.84  Aligned_cols=120  Identities=16%  Similarity=0.305  Sum_probs=105.1

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.  ..++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|++.....+.      ...++.++|  
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~~m--   78 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGAVM--   78 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHHHS--
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHHHh--
Confidence            5677798  456789999999999999999999999999987 89999999999998765431      246787754  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                  +++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||++||+++++|
T Consensus        79 ------------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           79 ------------RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ------------EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             ------------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHcC
Confidence                        35789999999999999999999999999995 7999999999999999976

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.75  E-value=8.9e-18  Score=148.24  Aligned_cols=119  Identities=19%  Similarity=0.315  Sum_probs=105.2

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|++.......       ..++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            45666987  89999999999999999999999999999987 89999999999998654431       245655    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               +| ++++++++++++.+|+++|.+++.+++||+|+ +|+++|+||++||+++++|
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence                     56 68899999999999999999999999999995 7999999999999999864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.74  E-value=5.6e-18  Score=151.35  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=99.6

Q ss_pred             CCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          363 EPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       363 d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      ++|.  .+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++...........+...++.+        
T Consensus        19 ~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~--------   90 (156)
T 3k6e_A           19 TFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH--------   90 (156)
T ss_dssp             GGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG--------
T ss_pred             HhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH--------
Confidence            3364  468999999999999999999999999999999999999999999986554322211122345554        


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                           +|.+++++|++++++.+|+++|.+++  .+||||+ +|+++|+||++||++++.
T Consensus        91 -----im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~-~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 -----MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             -----TCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             -----hhcCCceecccccHHHHHHHHHHHcC--CeEEEec-CCEEEEEEEHHHHHHHHH
Confidence                 56889999999999999999999876  4999995 799999999999999873

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=3.2e-18  Score=147.09  Aligned_cols=120  Identities=13%  Similarity=0.391  Sum_probs=101.9

Q ss_pred             ccCCCCCCC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.++  ++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.....      ....++.++|  
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~------~~~~~v~~~m--   75 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------AEAFSMDKVL--   75 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT------CCCCCHHHHC--
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc------CCCCCHHHHc--
Confidence            345568744  8899999999999999999999999999987 8999999999998754322      1246788754  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                 . ++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||++||+++++|
T Consensus        76 -----------~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           76 -----------R-TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             -----------B-CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC--
T ss_pred             -----------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence                       3 4778999999999999999999999999995 7999999999999999875

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.73  E-value=3e-17  Score=148.94  Aligned_cols=119  Identities=19%  Similarity=0.350  Sum_probs=106.0

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.  .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||.+|++.....+.       ..++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5677898  678999999999999999999999999999987 99999999999998765431       355665    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               +| ++++++.+++++.+|+++|.+++.+++||+|+ +|+++|+||+.||++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence                     56 78999999999999999999999999999995 6999999999999999875

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.73  E-value=1.3e-17  Score=141.83  Aligned_cols=117  Identities=20%  Similarity=0.356  Sum_probs=104.4

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      ++++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++.....+        ..++.+        
T Consensus         3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~--------   66 (122)
T 3kpb_A            3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEE--------   66 (122)
T ss_dssp             HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGG--------
T ss_pred             hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHH--------
Confidence            4566888999999999999999999999999999999999999999999999876543        135665        


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                           +|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus        67 -----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           67 -----IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             -----TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC
T ss_pred             -----HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhh
Confidence                 45678999999999999999999999999999995 699999999999999875

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=1.1e-17  Score=144.50  Aligned_cols=121  Identities=12%  Similarity=0.203  Sum_probs=102.9

Q ss_pred             cCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          361 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       361 v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      ++++|.  .+++++.+++++.+|+++|.+++++++||+++ +|+++|++|.+|+++....+..    +...++.++    
T Consensus         4 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~~----   75 (130)
T 3hf7_A            4 VNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLRA----   75 (130)
T ss_dssp             HHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHHH----
T ss_pred             HHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHHh----
Confidence            455675  36889999999999999999999999999975 5899999999999987654321    123456664    


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               | ++++++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++||+++++|
T Consensus        76 ---------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           76 ---------A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred             ---------c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence                     3 56889999999999999999999999999995 7999999999999999876

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.72  E-value=6.1e-18  Score=145.82  Aligned_cols=118  Identities=14%  Similarity=0.334  Sum_probs=100.7

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.  .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++.....        ..++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            3455687  568899999999999999999999999999985 8999999999998754321        345665    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               +|. +++++.+++++.+|+++|.+++.+++||+|+ +|+++|+||++||+++++|
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence                     343 5789999999999999999999999999995 6999999999999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.71  E-value=5.7e-17  Score=138.31  Aligned_cols=119  Identities=18%  Similarity=0.274  Sum_probs=104.4

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  440 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  440 (500)
                      ++++|.++++++.+++++.+|++.|.+++.+.+||+| +|+++|+|+.+|+++....+..    ....++.+++      
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~~m------   71 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWEVM------   71 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHHHC------
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHHHc------
Confidence            4556888899999999999999999999999999999 8999999999999986654321    2356788754      


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                             .+++.++.+++++.+|++.|.+++.+++||+| + |+++|+||.+||++++.
T Consensus        72 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           72 -------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             -------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC
T ss_pred             -------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                   67899999999999999999999999999999 3 99999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.71  E-value=5.2e-17  Score=141.98  Aligned_cols=120  Identities=14%  Similarity=0.214  Sum_probs=104.3

Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCC--cEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g--~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      .+++++|.++++++.+++++.+|+++|.+++++++||+|++|  +++|+||.+|+++....+..     ...++.+    
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~----   75 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMP----   75 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGG----
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHH----
Confidence            356777999999999999999999999999999999999888  99999999999986654311     1355555    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                               +|.+++.++.++ ++.+|+++|.+++.+++||+|+ +|+++|+||.+||++++
T Consensus        76 ---------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           76 ---------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER  126 (141)
T ss_dssp             ---------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred             ---------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHH
Confidence                     557789999999 9999999999999999999995 79999999999998754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.71  E-value=5.6e-17  Score=143.30  Aligned_cols=118  Identities=12%  Similarity=0.284  Sum_probs=104.3

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +++++|.+  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++....+..    +...++.++|   
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~~m---  101 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIADVM---  101 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHHHS---
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHHHc---
Confidence            56677988  89999999999999999999999999999999999999999999987654321    3357888755   


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  496 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~  496 (500)
                                .+++++|++++++.+|+++|.+++++++||+|+  ++++|+||.+||++
T Consensus       102 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A          102 ----------TRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             ----------EESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             ----------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence                      668899999999999999999999999999994  49999999999975

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.70  E-value=3.4e-17  Score=145.44  Aligned_cols=118  Identities=18%  Similarity=0.309  Sum_probs=102.7

Q ss_pred             cCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          361 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIV-DD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       361 v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVv-d~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      ++++|.+  +++++.+++++.+|+++|.+++++++||+ |+ +|+++|+||.+|++.....+.       ..++.+    
T Consensus        22 v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   90 (153)
T 3oco_A           22 ASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST----   90 (153)
T ss_dssp             HHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG----
T ss_pred             eeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH----
Confidence            4455875  78999999999999999999999999999 65 489999999999998654431       245655    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               +| ++++++.+++++.+|+++|.+++.+++||||+ +|+++|+||++||+++++|
T Consensus        91 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ---------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred             ---------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence                     56 68999999999999999999999999999995 7999999999999999875

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.70  E-value=1.3e-16  Score=142.56  Aligned_cols=121  Identities=16%  Similarity=0.312  Sum_probs=103.5

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.+ ++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++....+..    ....++.++      
T Consensus        18 ~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~~------   86 (159)
T 3fv6_A           18 QVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHII------   86 (159)
T ss_dssp             BGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGGT------
T ss_pred             CHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHHH------
Confidence            45666876 4599999999999999999999999999989999999999999986533211    234677764      


Q ss_pred             CCCcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCC---eEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK---RVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g---~liGiIS~~DIl~~l~  499 (500)
                             |.+  +++++.+++++.+|+++|.+++++++||||+ +|   +++|+||.+||++++.
T Consensus        87 -------m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           87 -------MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHH
Confidence                   455  7899999999999999999999999999995 57   9999999999999874

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.70  E-value=1.6e-17  Score=144.67  Aligned_cols=121  Identities=13%  Similarity=0.283  Sum_probs=101.2

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.  .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++......     ....++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-----~~~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-----GDSDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-----GGGCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-----CCCcCHHH----
Confidence            3455687  568899999999999999999999999999987 89999999999987544211     12355665    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                               +|. +++++.+++++.+|+++|.+++.+++||+|+ +|+++|+||++||++.++|
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence                     444 4889999999999999999999999999995 7999999999999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.69  E-value=1.7e-16  Score=142.00  Aligned_cols=125  Identities=20%  Similarity=0.252  Sum_probs=104.8

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc----ccCcccccHHHHHh
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA----HINLSEMTIHQALQ  435 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~----~~~~~~~~v~~~l~  435 (500)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|++.........    .......++.++  
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i--   83 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV--   83 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHH--
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHH--
Confidence            46677988899999999999999999999999999999889999999999998865431100    001224567764  


Q ss_pred             cCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          436 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       436 ~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                 |.+++++|.+++++.+|++.|.+++.+++|||| + |+++|+||.+||++++.
T Consensus        84 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           84 -----------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             -----------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             -----------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                       467899999999999999999999999999999 3 99999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.69  E-value=6.1e-17  Score=142.83  Aligned_cols=126  Identities=19%  Similarity=0.353  Sum_probs=102.9

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc---------cccCcccc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY---------AHINLSEM  428 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~---------~~~~~~~~  428 (500)
                      +++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++.+......         ........
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            46677887  79999999999999999999999999999999999999999999753211100         00011235


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          429 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       429 ~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ++.++             |.++++++.+++++.+|+++|.+++.+++||||+ +|+++|+||.+||++++.
T Consensus        86 ~v~~~-------------m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           86 LVGDL-------------MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             BHHHH-------------SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cHHHh-------------cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHH
Confidence            66664             4667889999999999999999999999999995 799999999999999875

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.69  E-value=1.9e-16  Score=137.53  Aligned_cols=121  Identities=20%  Similarity=0.400  Sum_probs=104.7

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHH-HHHHHcccccccCcccccHHHHHhcCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINLSEMTIHQALQLGQ  438 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di-~~~~~~~~~~~~~~~~~~v~~~l~~~~  438 (500)
                      +++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+++.+|+ ......+.     ....++.+++    
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~m----   79 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY-----TLETTIGDVM----   79 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC-----CSSCBHHHHS----
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc-----cCCcCHHHHh----
Confidence            4566688889999999999999999999999999999988999999999999 77554321     2246788754    


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~-----~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               .+++.++.+++++.+|++.|.+++     .+++||+|+ +|+++|+||.+||++++.
T Consensus        80 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           80 ---------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             ---------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ---------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence                     678899999999999999999999     999999995 799999999999999874

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.69  E-value=3e-17  Score=141.11  Aligned_cols=120  Identities=16%  Similarity=0.192  Sum_probs=103.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.+++.++.+++++.+|++.|.+++++.+||+|+ |+++|+||.+|+++....+..     ...++.+       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT-----VKEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC-----TTCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc-----ccCcHHH-------
Confidence            456679999999999999999999999999999999998 999999999999875433211     1134554       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence                  55778999999999999999999999999999995 799999999999999874

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.69  E-value=2.1e-16  Score=138.10  Aligned_cols=125  Identities=27%  Similarity=0.501  Sum_probs=101.7

Q ss_pred             CCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCc
Q 010821          364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSP  443 (500)
Q Consensus       364 ~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  443 (500)
                      +|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++....+.+   .....++.++|.....    
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m~~~~~----   88 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY---NDLSLSVGEALMRRSD----   88 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc---ccCCccHHHHHhcCcc----
Confidence            366789999999999999999999999999999988999999999999986654321   1235788887632100    


Q ss_pred             ccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          444 YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       444 ~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      .   ..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus        89 ~---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           89 D---FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             c---cCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            0   026889999999999999999999999999995 799999999999999875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.69  E-value=4.4e-17  Score=140.80  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=104.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHHcccccccCcccccHHHHHhcCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQ  438 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~  438 (500)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+|+.+|++. +...+..    ....++.+++    
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~~m----   80 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGELA----   80 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHHHH----
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHHHh----
Confidence            345558888999999999999999999999999999998899999999999984 4433211    2346788866    


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               .+++.++++++++.+|+++|.+++.+++||+|+  |+++|+||.+||++++.
T Consensus        81 ---------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           81 ---------RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             ---------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             ---------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence                     668899999999999999999999999999993  89999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.69  E-value=2.4e-16  Score=136.98  Aligned_cols=120  Identities=18%  Similarity=0.364  Sum_probs=103.8

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHHcccccccCcccccHHHHHhcCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQ  438 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~  438 (500)
                      +++++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++ +...+.     ....++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHH------
Confidence            456779889999999999999999999999999999998899999999999974 433321     12356665      


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                             +|.+++.++.+++++.+|++.|.+++.+++ |+|+ +|+++|+||.+||++++.
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHH
Confidence                   557789999999999999999999999999 9995 799999999999999875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.69  E-value=1.8e-16  Score=136.94  Aligned_cols=120  Identities=15%  Similarity=0.234  Sum_probs=104.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|+++.+|++.....+..     ...++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHH-------
Confidence            45677988899999999999999999999999999999 8999999999999886654321     1356665       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|.+++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||..||++++.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence                  45678899999999999999999999999999995 799999999999998864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.69  E-value=2e-16  Score=143.67  Aligned_cols=118  Identities=15%  Similarity=0.192  Sum_probs=102.0

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|+  .+++++.+++++.+|+++|.+++++++||+|++ |+++|+|+.+|++.......       ..++.  +  
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~--~--  105 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN--R--  105 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG--G--
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH--h--
Confidence            4567786  468899999999999999999999999999976 89999999999998654321       23444  2  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                                 .++++++.+++++.+|+++|.+++.+++||+|+ +|+++|+||+.||++.++|
T Consensus       106 -----------~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          106 -----------LRDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             -----------SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred             -----------cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence                       357889999999999999999999999999995 7999999999999999875

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.68  E-value=3e-16  Score=140.40  Aligned_cols=130  Identities=15%  Similarity=0.240  Sum_probs=104.4

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|+  +|+++|+||.+|+......+..........++.+++...
T Consensus        14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~   93 (164)
T 2pfi_A           14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG   93 (164)
T ss_dssp             BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence            445568889999999999999999999999999999996  799999999999998665432111112246788877432


Q ss_pred             CCCCCcccccCCC-ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          438 QDSYSPYELRSQR-CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       438 ~~~~~~~~im~~~-~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      .        ...+ +++|.+++++.+|+++|.+++.+++||+|  +|+++|+||.+||++++.
T Consensus        94 ~--------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           94 C--------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             C--------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             c--------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            1        0112 78899999999999999999999999999  499999999999999874

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=1.5e-16  Score=143.11  Aligned_cols=122  Identities=18%  Similarity=0.325  Sum_probs=104.6

Q ss_pred             ccCCCCCC---CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR---PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~---~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+   +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+......   ....++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAA---SLQQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGG---GGTSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCc---cccCCHHH----
Confidence            45556874   689999999999999999999999999999999999999999999865543211   22456666    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               +|.+++++|.+++++.+|+++|.+++++++||+| + |+++|+||..||++++.
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                     4577899999999999999999999999999999 3 99999999999999875

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=4.6e-16  Score=138.62  Aligned_cols=124  Identities=8%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCE-EEEEcCCCcEEEEEeHHHHHHHHHcc---ccc--------ccCccc
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSS-IPIVDDNDSLLDIYCRSDITALAKDK---AYA--------HINLSE  427 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~-lpVvd~~g~lvGiis~~Di~~~~~~~---~~~--------~~~~~~  427 (500)
                      +++++|.++++++.+++++.+|+++|.+++++. +||+|++ +++|+||.+|+++.....   ...        ......
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            567779999999999999999999999999999 9999987 999999999998754311   000        001234


Q ss_pred             ccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          428 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       428 ~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      .++.++             |.+ ++++.+++++.+|+++|.+++++++||||+ +|+++|+||.+||++++.
T Consensus        96 ~~v~~i-------------m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           96 KNASEI-------------MLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CBHHHH-------------CBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CcHHHH-------------cCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            566664             467 899999999999999999999999999995 799999999999999874

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.66  E-value=2.5e-16  Score=139.05  Aligned_cols=124  Identities=22%  Similarity=0.228  Sum_probs=101.9

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc-cCcccccHHHHHhc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-INLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-~~~~~~~v~~~l~~  436 (500)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......... ......++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            3445587  45899999999999999999999999999999999999999999998654321100 0112345555    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               +|.+++.++.+++++.+|+++|.++++  +||||+ +|+++|+||.+||++++.
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHH
Confidence                     557789999999999999999999987  999995 799999999999999874

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=2.3e-16  Score=143.44  Aligned_cols=126  Identities=25%  Similarity=0.377  Sum_probs=101.6

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc--------cc-------
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--------AH-------  422 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~--------~~-------  422 (500)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||+++......        ..       
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            34566877  78999999999999999999999999999999999999999999852210000        00       


Q ss_pred             --------cCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHH
Q 010821          423 --------INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI  494 (500)
Q Consensus       423 --------~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DI  494 (500)
                              ......++.+             +|.+++++|.+++++.+|+++|.+++++++||+|+ +|+++|+||.+||
T Consensus        85 ~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~di  150 (180)
T 3sl7_A           85 FNELQKLISKTYGKVVGD-------------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNV  150 (180)
T ss_dssp             HHHHHHHHHTTTTCBHHH-------------HSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHH
T ss_pred             hHHHHHHHhccccccHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHH
Confidence                    0011244554             45778899999999999999999999999999995 7999999999999


Q ss_pred             HHHhh
Q 010821          495 FKFLL  499 (500)
Q Consensus       495 l~~l~  499 (500)
                      ++++.
T Consensus       151 l~~~~  155 (180)
T 3sl7_A          151 VRAAL  155 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99874

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.66  E-value=3.4e-16  Score=135.62  Aligned_cols=119  Identities=13%  Similarity=0.278  Sum_probs=101.7

Q ss_pred             cCCCCC---CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH-HHHcccccccCcccccHHHHHhc
Q 010821          361 IGEPNR---RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       361 v~d~m~---~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      ++++|.   ++++++.+++++.+|++.|.+++++++||+| +|+++|+|+.+|+++ +...+.    .....++.+    
T Consensus         8 v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~----~~~~~~v~~----   78 (135)
T 2rc3_A            8 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK----PVKDTQVKE----   78 (135)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS----CGGGSBGGG----
T ss_pred             HHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC----CcccCCHHH----
Confidence            445577   7899999999999999999999999999998 899999999999986 333221    122456665    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               +|.+++.++.+++++.+|+++|.+++.+++||+|  +|+++|+||.+||++++.
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           79 ---------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             ---------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ---------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHH
Confidence                     4577899999999999999999999999999999  499999999999999875

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.65  E-value=8.6e-16  Score=143.42  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=128.4

Q ss_pred             EEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhc---C
Q 010821          223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---E  299 (500)
Q Consensus       223 Gilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~---~  299 (500)
                      .-++..|.++++..+   +.....+.+..+.......+...+.++...+|.+|.++++++.+++|+.+|++.|.++   +
T Consensus        11 ~~m~~dd~~dll~~l---~~~~~~~~l~~l~~~e~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~   87 (205)
T 3kxr_A           11 AQLSPEDLIEWSDYL---PESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDC   87 (205)
T ss_dssp             GGSCHHHHHHTTTTS---CHHHHHHHHHHSCHHHHHHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTT
T ss_pred             HcCCHHHHHHHHHhC---CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccC
Confidence            335667777766543   1112234444555666666777778888889999999999999999999999999997   8


Q ss_pred             CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHH
Q 010821          300 VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLS  379 (500)
Q Consensus       300 i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~  379 (500)
                      ++.+||++   +++   +++|++|.+|++..             ....+            ++++|.++++++++++++.
T Consensus        88 ~~~~~Vvd---~~~---~lvGivt~~dll~~-------------~~~~~------------v~~im~~~~~~v~~~~~l~  136 (205)
T 3kxr_A           88 NDNLFIVD---EAD---KYLGTVRRYDIFKH-------------EPHEP------------LISLLSEDSRALTANTTLL  136 (205)
T ss_dssp             CCEEEEEC---TTC---BEEEEEEHHHHTTS-------------CTTSB------------GGGGCCSSCCCEETTSCHH
T ss_pred             eeEEEEEc---CCC---eEEEEEEHHHHHhC-------------CCcch------------HHHHhcCCCeEECCCCCHH
Confidence            99999993   355   79999999998731             11223            3455888899999999999


Q ss_pred             HHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          380 AALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       380 ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      +|+++|.+++++.+||+|++|+++|+||..|++..+...
T Consensus       137 ~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          137 DAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             HHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999999999999877654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.65  E-value=7.5e-16  Score=136.95  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc-ccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~-~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++....... +....+...++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            45677876  8899999999999999999999999999998899999999999988654321 1000112345554    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               +|.+++.++.+++++.+|++.|.++++  +||||+ +|+++|+||.+||++++.
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHH
Confidence                     557789999999999999999999987  999995 699999999999999874

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.65  E-value=6.6e-16  Score=141.52  Aligned_cols=122  Identities=16%  Similarity=0.274  Sum_probs=104.7

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+++.+||+........   .....++.+       
T Consensus        10 ~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---~~~~~~v~~-------   79 (184)
T 1pvm_A           10 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRL-------   79 (184)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGG-------
T ss_pred             CHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---CcccCCHHH-------
Confidence            5667799899999999999999999999999999999988999999999999886542110   112356665       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                            +|.+++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||..||++++
T Consensus        80 ------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           80 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTS
T ss_pred             ------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence                  45778999999999999999999999999999995 69999999999999865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.65  E-value=1.5e-15  Score=145.74  Aligned_cols=198  Identities=12%  Similarity=0.112  Sum_probs=129.2

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCC-----CCccc---
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS-----SSLPI---  344 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~-----~~~~~---  344 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..||++++........     .....   
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd---~~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~   84 (245)
T 3l2b_A           11 DLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD---GNN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNILD   84 (245)
T ss_dssp             GSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHH
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHH
Confidence            35788899999999999999999999999999993   346   79999999999998864321100     00000   


Q ss_pred             ------c------cccccccccccc-CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC------------
Q 010821          345 ------L------KLPICAIPVGTW-VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN------------  399 (500)
Q Consensus       345 ------l------~~~v~~l~i~~~-~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~------------  399 (500)
                            +      ....+.+.++.. ...+.+.+....+.+-.+  ..+++..+.+.+++.+++++..            
T Consensus        85 ~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           85 TLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                  0      000001111111 011222333333344433  4788888999999999888532            


Q ss_pred             CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEE
Q 010821          400 DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIV  478 (500)
Q Consensus       400 g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VV  478 (500)
                      +.+-.+.+..|........      ....++.+             +|. +++.++++++++.+|+++|.+++++++|||
T Consensus       163 ~~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVv  223 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI  223 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEE
T ss_pred             cCCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEEEE
Confidence            1234455555544332221      11355666             456 789999999999999999999999999999


Q ss_pred             eCCCCeEEEEEehHHHHHHh
Q 010821          479 EAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       479 d~~~g~liGiIS~~DIl~~l  498 (500)
                      |+ +|+++|+||++||+++.
T Consensus       224 d~-~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          224 DE-NNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CT-TCBEEEEEECC------
T ss_pred             cC-CCeEEEEEEHHHhhchh
Confidence            95 79999999999999864

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.65  E-value=5.1e-16  Score=138.19  Aligned_cols=121  Identities=14%  Similarity=0.316  Sum_probs=103.0

Q ss_pred             ccCCCCC------CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHH
Q 010821          360 KIGEPNR------RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA  433 (500)
Q Consensus       360 ~v~d~m~------~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  433 (500)
                      +++++|.      ++++++.+++++.+|+++|.+++++.+||++ +|+++|+||.+|+++.+.....   .....++.++
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~   83 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER---SSKATRVEEI   83 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC---CSSSCBHHHH
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC---CccccCHHHH
Confidence            4555576      4569999999999999999999999999965 8999999999999986543321   1235778875


Q ss_pred             HhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          434 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       434 l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      +             .+++.++.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++.
T Consensus        84 m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           84 M-------------TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             S-------------BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             c-------------CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            4             67889999999999999999999999999999  499999999999999875

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.65  E-value=5.4e-16  Score=138.45  Aligned_cols=124  Identities=18%  Similarity=0.212  Sum_probs=103.1

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc-ccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~-~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|++....... +........++.+++  
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m--   92 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM--   92 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS--
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhc--
Confidence            34455877  7899999999999999999999999999999899999999999998764421 100112346777754  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                 .+++.++.+++++.+|+++|.++++  +||+|+ +|+++|+||.+||++++.
T Consensus        93 -----------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           93 -----------LTDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             -----------BCSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             -----------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence                       6789999999999999999999987  999995 799999999999999864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.64  E-value=1e-15  Score=142.86  Aligned_cols=116  Identities=19%  Similarity=0.227  Sum_probs=102.5

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHC---CCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQA---QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~---~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|++++++++++.++.+|++.|.+.   +++.+||+|++|+++|+||.+|++..          ....++.+    
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------~~~~~v~~----  120 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------EPHEPLIS----  120 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----------CTTSBGGG----
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----------CCcchHHH----
Confidence            45666999999999999999999999987   88999999999999999999998642          11356665    


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                               +|.++++++++++++.+|++.|.+++.+.+||||+ +|+++|+||..||++.+.
T Consensus       121 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ---------LLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ---------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ---------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence                     55778999999999999999999999999999995 799999999999998863

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.63  E-value=4.3e-16  Score=138.88  Aligned_cols=114  Identities=11%  Similarity=0.298  Sum_probs=99.4

Q ss_pred             ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821          360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  436 (500)
Q Consensus       360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g-~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  436 (500)
                      +++++|.+  +++++++++++.+|+++|.+++++++||+|+++ +++|+||.+|++.....+       ...++.++|  
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~im--  109 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKSIL--  109 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHHHC--
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHHHc--
Confidence            56777976  689999999999999999999999999999874 999999999998754332       246777754  


Q ss_pred             CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 010821          437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  495 (500)
Q Consensus       437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl  495 (500)
                                 . +++++.+++++.+|++.|.+++.+++||+|+ +|+++|+||+.||+
T Consensus       110 -----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 -----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII  155 (156)
T ss_dssp             -----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred             -----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence                       3 4889999999999999999999999999995 79999999999986

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.63  E-value=4.7e-15  Score=142.25  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=105.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHHHHHcccccccC-------------
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAKDKAYAHIN-------------  424 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~~~~~~~~~~~~-------------  424 (500)
                      +++++|.++++++.+++++.+|.++|.+++++.+||||++  ++++|+|+++||+.++.........             
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR   93 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            6788899999999999999999999999999999999974  6899999999999765432100000             


Q ss_pred             -----------------ccc---------------------------------------------------------ccH
Q 010821          425 -----------------LSE---------------------------------------------------------MTI  430 (500)
Q Consensus       425 -----------------~~~---------------------------------------------------------~~v  430 (500)
                                       +..                                                         .+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (250)
T 2d4z_A           94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL  173 (250)
T ss_dssp             -------------------------------------------------------------------------CCSCCBH
T ss_pred             ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence                             000                                                         000


Q ss_pred             HHH-----HhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          431 HQA-----LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       431 ~~~-----l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      .+.     .......++...+|...++++.++++|.+|.++|...+++++||++  .|+|+||||+.||++++.+
T Consensus       174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            000     0000001111125888999999999999999999999999999998  5999999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=3e-15  Score=140.61  Aligned_cols=156  Identities=12%  Similarity=0.168  Sum_probs=99.3

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +.+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+|+++.+.             ..    
T Consensus        16 ~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~l~Givt~~dl~~~~~-------------~~----   72 (213)
T 1vr9_A           16 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDLDL-------------DS----   72 (213)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTSCT-------------TS----
T ss_pred             HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---EEEEEEEHHHHHhhcC-------------CC----
Confidence            346788999999999999999999999999999993   345   7999999999874211             22    


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHH
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH  431 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~  431 (500)
                              .++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++......         .+.
T Consensus        73 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~  135 (213)
T 1vr9_A           73 --------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMD  135 (213)
T ss_dssp             --------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C--
T ss_pred             --------cHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCC
Confidence                    245558888999999999999999999999999999998899999999999998654321         111


Q ss_pred             HHHhcCCCCCCcccccCC-CceEeCCCCCHHHHHHHHhcCCCCEEEEEeC
Q 010821          432 QALQLGQDSYSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEA  480 (500)
Q Consensus       432 ~~l~~~~~~~~~~~im~~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~  480 (500)
                      +..             .+ .+.+.....++.+|.+.|.+++++.++|++.
T Consensus       136 ~~~-------------~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          136 VPG-------------IRFSVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             --------------------------------------------------
T ss_pred             CCc-------------EEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence            111             00 1111233445999999999999999999863

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.62  E-value=4e-15  Score=134.78  Aligned_cols=120  Identities=13%  Similarity=0.129  Sum_probs=101.1

Q ss_pred             CCcccC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccc
Q 010821          271 HGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  348 (500)
Q Consensus       271 ~g~~~~--~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~  348 (500)
                      ++.+|.  .+++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+||++.+....          ..+
T Consensus        44 v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------~~~  108 (172)
T 3lhh_A           44 ISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCR--NNVD---DMVGIISAKQLLSESIAGE----------RLE  108 (172)
T ss_dssp             TTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHTTC----------CCC
T ss_pred             HHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---eEEEEEEHHHHHHHHhhcC----------ccc
Confidence            445677  6789999999999999999999999999993  3325   7999999999998765320          223


Q ss_pred             cccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          349 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       349 v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                                  ++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus       109 ------------v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          109 ------------LVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             ------------GGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             ------------HHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence                        34458 7899999999999999999999999999999999999999999999866543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.62  E-value=1.1e-15  Score=143.69  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=103.9

Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHh
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ  435 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~  435 (500)
                      +|.++++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+.....          ..++.+   
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~---   76 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN---   76 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG---
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH---
Confidence            4555677789999999999999999999999999999999998899999999999975321          245555   


Q ss_pred             cCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          436 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       436 ~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                +|.++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+||++.+.
T Consensus        77 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 ----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             ----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence                      55778999999999999999999999999999995 699999999999998763

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.61  E-value=6.9e-15  Score=129.54  Aligned_cols=118  Identities=12%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             CcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc
Q 010821          272 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  349 (500)
Q Consensus       272 g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v  349 (500)
                      +.+|.+  +++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+|+++.+....          ..+ 
T Consensus        26 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------~~~-   89 (148)
T 3lv9_A           26 REIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR--KNKD---DILGFVHIRDLYNQKINEN----------KIE-   89 (148)
T ss_dssp             GGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------CCC-
T ss_pred             HHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhcCC----------Ccc-
Confidence            345666  899999999999999999999999999993  3325   7999999999998765431          122 


Q ss_pred             ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          350 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       350 ~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                                 ++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus        90 -----------v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           90 -----------LEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             -----------GGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             -----------HHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                       34458 788999999999999999999999999999999999999999999986543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.61  E-value=2e-15  Score=137.95  Aligned_cols=125  Identities=13%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             ccCCCCCCC----ceEe--cCCCCHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHccccccc--------
Q 010821          360 KIGEPNRRP----LAML--RPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHI--------  423 (500)
Q Consensus       360 ~v~d~m~~~----~~~v--~~~~~l~ea~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~--------  423 (500)
                      +++++|.+.    ++++  .+++++.+|+++|.+++++.+||+  |++|+++|+||..|++...........        
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            345558765    7788  999999999999999999999999  788999999999999986543210000        


Q ss_pred             ------------CcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEeh
Q 010821          424 ------------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL  491 (500)
Q Consensus       424 ------------~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~  491 (500)
                                  .....++.+             +|.+++++|.+++++.+|+++|.+++.+++||+|  +|+++|+||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~-------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~  156 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRN-------------ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITK  156 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGG-------------GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEH
T ss_pred             ecccCCcccccccccCccHHH-------------hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEH
Confidence                        011223333             5678899999999999999999999999999999  5999999999


Q ss_pred             HHHHHHhh
Q 010821          492 SDIFKFLL  499 (500)
Q Consensus       492 ~DIl~~l~  499 (500)
                      +||++++.
T Consensus       157 ~dll~~l~  164 (185)
T 2j9l_A          157 KDVLKHIA  164 (185)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.59  E-value=4.7e-15  Score=132.25  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=97.1

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      ..+++++.+++|+.+|+++|.+++++++||++   +++   +++|++|.+|+++++.......   ......        
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd---~~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~--------   86 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVT---DEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADT--------   86 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEEC---C-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTS--------
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEecchhhhhhhccccc---cccccc--------
Confidence            35799999999999999999999999999993   345   7999999999998876542110   011122        


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                          +++++|.+++.++.+++++.+|+++|.+++  .+||+|++|+++|+||.+||++.+..
T Consensus        87 ----~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           87 ----DIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             ----BGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----CHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence                345559999999999999999999998765  49999999999999999999986643

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.59  E-value=2.5e-15  Score=135.82  Aligned_cols=134  Identities=20%  Similarity=0.330  Sum_probs=100.3

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc---
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI---  349 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v---  349 (500)
                      .+|.++++++.+++|+.+|+++|.+++++++||++   ++|   +++|++|.+||++.+........  ...+...+   
T Consensus        22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~g---~lvGiit~~Dll~~~~~~~~~~~--~~~~~~~~~~~   93 (170)
T 4esy_A           22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVD---QNG---HLVGIITESDFLRGSIPFWIYEA--SEILSRAIPAP   93 (170)
T ss_dssp             GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEEC---TTS---CEEEEEEGGGGGGGTCCTTHHHH--HHHHTTTSCHH
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEc---CCc---cEEEEEEHHHHHHHHhhccccch--hhhhhhccchh
Confidence            46899999999999999999999999999999993   456   79999999999865432110000  00000000   


Q ss_pred             --ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          350 --CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       350 --~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                        ..+.-.....+++++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++++
T Consensus        94 ~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           94 EVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence              000000001145666999999999999999999999999999999998 69999999999998754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.58  E-value=1.3e-14  Score=123.14  Aligned_cols=115  Identities=21%  Similarity=0.355  Sum_probs=99.0

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|++.|.+++++.+||++   +++   +++|+++..|+++++...           ..++    
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~-----------~~~v----   64 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVD---EHG---KLVGIITSWDIAKALAQN-----------KKTI----   64 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEEC---TTS---BEEEEECHHHHHHHHHTT-----------CCBG----
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHHHHHHhc-----------ccCH----
Confidence            4677899999999999999999999999999993   346   799999999999876532           1123    


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                              +++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus        65 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           65 --------EEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             --------GGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             --------HHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                    44487889999999999999999999999999999988999999999999986543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.57  E-value=1.4e-14  Score=124.72  Aligned_cols=116  Identities=10%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             cccC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccc
Q 010821          273 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  350 (500)
Q Consensus       273 ~~~~--~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~  350 (500)
                      .+|.  .+++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+|+++++....         ...++.
T Consensus        10 ~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~~~---------~~~~v~   75 (130)
T 3i8n_A           10 QVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYS--EQKD---NIIGFVHRLELFKMQQSGS---------GQKQLG   75 (130)
T ss_dssp             TTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEES--SSTT---CEEEECCHHHHHHHHHTTT---------TTSBHH
T ss_pred             hCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---cEEEEEEHHHHHHHHhcCC---------CcCCHH
Confidence            3565  4577999999999999999999999999993  3335   7999999999998765321         122333


Q ss_pred             cccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          351 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       351 ~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      +            +| +++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+
T Consensus        76 ~------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           76 A------------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             H------------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             H------------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            3            37 3578999999999999999999999999999999999999999999854

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.57  E-value=2.4e-14  Score=123.39  Aligned_cols=118  Identities=22%  Similarity=0.345  Sum_probs=100.5

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++.+++++.+|+++|.+++++.+||++    ++   +++|++|.+|+++++.....        ...     
T Consensus         8 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~-----   67 (133)
T 2ef7_A            8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LET-----   67 (133)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTC-----
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------ccc-----
Confidence            35777899999999999999999999999999993    46   79999999999987654211        122     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                             +++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++...+
T Consensus        68 -------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           68 -------KAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             -------BGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -------CHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                   3345587789999999999999999999999999999989999999999999986654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.56  E-value=9.2e-15  Score=125.41  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=99.4

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.+++.++.+++++.+|+++|.+++++.+||++   + +   +++|++|.+||++.+....        ....     
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~--------~~~~-----   68 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWP--------TVKE-----   68 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSC--------CTTC-----
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCC--------cccC-----
Confidence            35788899999999999999999999999999994   3 6   8999999999986432110        0011     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                             +++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus        69 -------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           69 -------KLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             -------BCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             -------cHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence                   3455588889999999999999999999999999999999999999999999986643

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=1.7e-14  Score=124.35  Aligned_cols=116  Identities=12%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++.+++++.+|+++|.+++++++||++  ++++   +++|++|.+|+++++....       .....++.      
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~--~~~~---~lvGivt~~dl~~~~~~~~-------~~~~~~v~------   73 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYR--DSLD---DAISMLRVREAYRLMTEKK-------EFTKEIML------   73 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEES--SSGG---GEEEEEEHHHHHHHHTSSS-------CCCHHHHH------
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCC---cEEEEEEHHHHHHHHhccC-------ccchhhHH------
Confidence            4688999999999999999999999999993  3345   7999999999998765321       00112233      


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                            ++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus        74 ------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           74 ------RAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ------HHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             ------Hhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence                  336 567899999999999999999999999999999999999999999986543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.56  E-value=2.9e-14  Score=126.95  Aligned_cols=115  Identities=15%  Similarity=0.194  Sum_probs=94.7

Q ss_pred             CCCcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccc
Q 010821          270 SHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL  347 (500)
Q Consensus       270 ~~g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~  347 (500)
                      .++.+|.+  +++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+|+++++...          ...
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~----------~~~  103 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIG--EDKD---EVLGILHAKDLLKYMFNP----------EQF  103 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGSSCG----------GGC
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHcC----------Ccc
Confidence            34556765  789999999999999999999999999993  3334   699999999998643211          122


Q ss_pred             ccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 010821          348 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  412 (500)
Q Consensus       348 ~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~  412 (500)
                      ++.            ++|.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++
T Consensus       104 ~v~------------~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLK------------SILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             CHH------------HHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             cHH------------HHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            333            33754 88999999999999999999999999999999999999999985

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.55  E-value=1.2e-14  Score=126.34  Aligned_cols=113  Identities=9%  Similarity=0.119  Sum_probs=93.9

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+||++++...        .....+        
T Consensus        13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~--------~~~~~~--------   71 (136)
T 3lfr_A           13 SQMISIKATQTPREFLPAVIDAAHSRYPVIG--ESHD---DVLGVLLAKDLLPLILKA--------DGDSDD--------   71 (136)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGGSS--------SGGGCC--------
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHhc--------cCCCcC--------
Confidence            5689999999999999999999999999993  3325   799999999998754321        011222        


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                          ++++|.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+
T Consensus        72 ----v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           72 ----VKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             ----GGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             ----HHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                3444755 88999999999999999999999999999999999999999999743

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.55  E-value=1.8e-14  Score=123.88  Aligned_cols=111  Identities=12%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+|+++++..           ...++       
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~-----------~~~~v-------   71 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYE--DDRD---NIIGILLAKDLLRYMLE-----------PALDI-------   71 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEES--SSTT---CEEEEEEGGGGGGGGTC-----------TTSCG-------
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCC---cEEEEEEHHHHHhHhcc-----------CCcCH-------
Confidence            5688999999999999999999999999993  3335   79999999999864321           01223       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                           +++|. +++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        72 -----~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           72 -----RSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             -----GGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             -----HHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                 34464 4789999999999999999999999999999899999999999998654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.55  E-value=2.6e-14  Score=121.62  Aligned_cols=117  Identities=17%  Similarity=0.272  Sum_probs=98.4

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++.+||++    ++   +++|++|.+|+++++.....       ....++.   
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~---   68 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVW---   68 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHH---
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHH---
Confidence            4677899999999999999999999999999993    46   89999999999987654311       1123333   


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                               ++|.+++.++.+++++.+|++.|.+++++.+||+|+ |+++|+||.+|+++.+..
T Consensus        69 ---------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           69 ---------EVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ---------HHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             ---------HHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                     347778999999999999999999999999999997 999999999999986544

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.55  E-value=8.1e-14  Score=126.41  Aligned_cols=121  Identities=7%  Similarity=0.119  Sum_probs=99.7

Q ss_pred             CCCCcccC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccc
Q 010821          269 DSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK  346 (500)
Q Consensus       269 ~~~g~~~~--~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~  346 (500)
                      ..++.+|.  ++++++.+++++.+|+++|.+++++++||++  .+.+   +++|+||.+||++++....          .
T Consensus        36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~Dl~~~~~~~~----------~  100 (173)
T 3ocm_A           36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCR--GSLD---EVVGIGRAKDLVADLITEG----------R  100 (173)
T ss_dssp             SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------S
T ss_pred             CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---CEEEEEEHHHHHHHHhcCC----------c
Confidence            34455675  4689999999999999999999999999993  3335   7999999999998765321          1


Q ss_pred             cccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          347 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       347 ~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      .++            +  |.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..||+..+...
T Consensus       101 ~~v------------~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          101 VRR------------N--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             CCG------------G--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             chh------------H--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence            122            2  235678999999999999999999999999999999999999999999876654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.55  E-value=9e-15  Score=143.66  Aligned_cols=116  Identities=15%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++..          ....++.++|
T Consensus       138 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~----------~~~~~v~~im  207 (286)
T 2oux_A          138 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN----------DDDTLIADIL  207 (286)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS----------CTTSBHHHHS
T ss_pred             HHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC----------CCCCcHHHHc
Confidence            44555988999999999999999999987     88999999999999999999999753          1246788754


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                   .+++++|++++++.+|++.|.+++.+++||||+ +|+++|+||..||++.+.
T Consensus       208 -------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          208 -------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             -------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             -------------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence                         678999999999999999999999999999995 799999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.54  E-value=2.3e-14  Score=127.01  Aligned_cols=117  Identities=10%  Similarity=0.125  Sum_probs=99.0

Q ss_pred             ccCC--CceecCCCCcHHHHHHHHHhcCCceeeEE-ecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccc
Q 010821          274 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPII-HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  350 (500)
Q Consensus       274 ~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv-~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~  350 (500)
                      +|.+  +++++.+++++.+|+++|.+++++++||+ +  .+.+   +++|++|.+||++++....          ..+  
T Consensus        25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d--~~~~---~lvGivt~~dl~~~~~~~~----------~~~--   87 (153)
T 3oco_A           25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTAD--NDKD---KIIGYAYNYDIVRQARIDD----------KAK--   87 (153)
T ss_dssp             HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEET--TEEE---EEEEEEEHHHHHHHHHHHT----------TSB--
T ss_pred             EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEEC--CCCC---cEEEEEEHHHHHhHHhcCC----------CCc--
Confidence            3554  78999999999999999999999999999 3  1235   7999999999998776431          122  


Q ss_pred             cccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          351 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       351 ~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                                ++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus        88 ----------v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A           88 ----------ISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             ----------GGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred             ----------HHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence                      34458 7899999999999999999999999999999999999999999999876543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.54  E-value=1.7e-14  Score=123.59  Aligned_cols=111  Identities=13%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821          278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  357 (500)
Q Consensus       278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  357 (500)
                      +++++.+++++.+|+++|.+++++++||++  .+.+   +++|++|.+|+++.+....         ...++.       
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~~---------~~~~v~-------   72 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA---------EAFSMD-------   72 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGSTTC---------CCCCHH-------
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhccC---------CCCCHH-------
Confidence            488999999999999999999999999993  3325   7999999999986543210         122333       


Q ss_pred             CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                           ++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+
T Consensus        73 -----~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           73 -----KVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             -----HHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             -----HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                 33744 67899999999999999999999999999999999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.54  E-value=1.9e-14  Score=140.79  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++...          ...++.+  
T Consensus       136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~--  203 (278)
T 2yvy_A          136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  203 (278)
T ss_dssp             BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT--
T ss_pred             hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            34566988999999999999999999986     789999999999999999999997531          1345555  


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                 +|.+++++|++++++.+|++.|.+++.+.+||||+ +|+++|+||..||++.+.
T Consensus       204 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          204 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             -----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC-
T ss_pred             -----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence                       55778999999999999999999999999999995 799999999999998864

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.54  E-value=5.7e-15  Score=162.38  Aligned_cols=81  Identities=15%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             CCceeeEEEE--ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEe--eCCCCC---e
Q 010821           22 DTVLIPMRFV--WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR--HDEHQP---F   93 (500)
Q Consensus        22 ~~~~~~~~f~--~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~--~d~~~~---~   93 (500)
                      ....++|+|+  |+.+|++|+|+||||+|++. .+|.+   .+|.|++++.||||+|+|||+|||+|+  +||++|   +
T Consensus        14 ~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~---~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y   90 (696)
T 4aee_A           14 RKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK---IEEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKC   90 (696)
T ss_dssp             EEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE---ETTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEE
T ss_pred             CCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe---cCCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCcccc
Confidence            3345566666  55589999999999999875 57765   379999999999999999999999999  788887   5


Q ss_pred             eeCCCCCeeeEE
Q 010821           94 ISSEYGIVNTVL  105 (500)
Q Consensus        94 ~~~~~g~~nn~l  105 (500)
                      +.|++|+.|++.
T Consensus        91 ~~~~~g~~n~~~  102 (696)
T 4aee_A           91 VHTSFFPEYKKC  102 (696)
T ss_dssp             EECSSCTTSEEE
T ss_pred             cccCCcccccee
Confidence            889999999985

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.54  E-value=6.8e-14  Score=121.98  Aligned_cols=117  Identities=17%  Similarity=0.283  Sum_probs=97.6

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++  ++.  ..+++|++|.+|+++++.....        ...+    
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~--~~~~~Givt~~dl~~~~~~~~~--------~~~~----   72 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTA--RDN--PKRPVAVVSERDILRAVAQRLD--------LDGP----   72 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE--TTE--EEEEEEEEEHHHHHHHHHTTCC--------TTSB----
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCC--cceeEEEEEHHHHHHHHhcCCC--------CCCC----
Confidence            35778899999999999999999999999999994  221  0159999999999987653211        1223    


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                              ++++|.++++++.++ ++.+|+++|.+++++.+||+|++|+++|+||.+||++.
T Consensus        73 --------v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~  125 (141)
T 2rih_A           73 --------AMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  125 (141)
T ss_dssp             --------SGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             --------HHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHH
Confidence                    344588899999999 99999999999999999999989999999999999864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.53  E-value=9.5e-14  Score=122.34  Aligned_cols=120  Identities=16%  Similarity=0.213  Sum_probs=97.0

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++.+++++.+|+++|.+++++++||++   +++   +++|++|..||++++.......  .......         
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~--~~~~~~~---------   87 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD---PMY---KLHGLISTAMILDGILGLERIE--FERLEEM---------   87 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHTBCSSSBC--GGGGGGC---------
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---CEEEEEEHHHHHHHHHhhcccc--hhHHhcC---------
Confidence            4689999999999999999999999999993   346   7999999999998764321100  0001112         


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                         +++++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|+||..||++.+...
T Consensus        88 ---~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           88 ---KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             ---BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ---CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence               3456688899999999999999999999886  99999999999999999999876543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.53  E-value=5.6e-14  Score=121.81  Aligned_cols=119  Identities=18%  Similarity=0.394  Sum_probs=98.3

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhH-HHHHHhhcccCCCCcccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI-LKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dI-l~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      .+|.++++++.+++++.+|+++|.+++++.+||++   +++   +++|++|..|+ ++++....        ....++  
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v--   75 (138)
T 2p9m_A           12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID---DEN---KVIGIVTTTDIGYNLIRDKY--------TLETTI--   75 (138)
T ss_dssp             GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEEC---TTC---BEEEEEEHHHHHHHHTTTCC--------CSSCBH--
T ss_pred             HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEEC---CCC---eEEEEEEHHHHHHHHHhhcc--------cCCcCH--
Confidence            35777899999999999999999999999999993   346   79999999999 87654211        112333  


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                                +++|.+++.++.+++++.+|++.|.+++     ++.+||+|++|+++|+||..|+++...+
T Consensus        76 ----------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           76 ----------GDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             ----------HHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----------HHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence                      3448788999999999999999999999     9999999989999999999999986543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.53  E-value=6.9e-14  Score=124.93  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=100.9

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCC-Ccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPICA  351 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~-~~~~l~~~v~~  351 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++...+..... .......    
T Consensus         9 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~----   78 (160)
T 2o16_A            9 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFET----   78 (160)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCC----
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHHHhhcccccccchhccc----
Confidence            35777899999999999999999999999999993   346   799999999999887654321000 0001122    


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                              +++++|.++++++.+++++.+|+++|.+++++.+||+|+ |+++|+||..||++....
T Consensus        79 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           79 --------PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             --------BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             --------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                    344558889999999999999999999999999999997 999999999999986543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.51  E-value=1.3e-13  Score=119.62  Aligned_cols=121  Identities=15%  Similarity=0.303  Sum_probs=99.5

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +.+|.++++++.+++++.+|++.|.+++++.+||++   +++   +++|++|..|+++.+....       .....    
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~----   72 (138)
T 2yzi_A           10 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN---DDG---NVVGFFTKSDIIRRVIVPG-------LPYDI----   72 (138)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTTC-------CCTTS----
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHHhcC-------CcccC----
Confidence            345778899999999999999999999999999993   345   7999999999984332110       01122    


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                              +++++|.+++.++.+++++.+|+++|.+++++.+ |+|++|+++|+||..|+++.....
T Consensus        73 --------~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           73 --------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             --------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             --------CHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence                    3455588889999999999999999999999999 999889999999999999876654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=1.8e-13  Score=122.85  Aligned_cols=116  Identities=15%  Similarity=0.275  Sum_probs=98.4

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      .+++++.+++++.+|+++|.+++++.+||++   +++   +++|++|.+||++++......      ....+        
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~--------   94 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD---ADG---VVLGIFTERDLVKAVAGQGAA------SLQQS--------   94 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHHHHGGG------GGTSB--------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHHhcCCc------cccCC--------
Confidence            3688999999999999999999999999993   345   799999999999887754211      11233        


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                          ++++|.++++++.+++++.+|+++|.+++++.+||+|+ |+++|+||..||++....
T Consensus        95 ----v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           95 ----VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ----GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             ----HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                34558888999999999999999999999999999998 999999999999987544

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.51  E-value=1e-13  Score=123.65  Aligned_cols=119  Identities=15%  Similarity=0.258  Sum_probs=98.0

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.+ ++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++....       .....+    
T Consensus        21 ~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~----   82 (159)
T 3fv6_A           21 DFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVD---RDA---VLVGVLSRKDLLRASIGQQ-------ELTSVP----   82 (159)
T ss_dssp             GSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHTSCS-------CTTTCB----
T ss_pred             HHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---cEEEEEeHHHHHHHhhccC-------cccCcC----
Confidence            34666 45999999999999999999999999993   345   7999999999998764211       111223    


Q ss_pred             cccccCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCC---cEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND---SLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g---~lvGiis~~Di~~~~~~  417 (500)
                              ++++|.+  +++++.+++++.+|+++|.+++++.+||+|++|   +++|+||..||++.+.+
T Consensus        83 --------v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           83 --------VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             --------GGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             --------HHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence                    3455877  889999999999999999999999999999888   99999999999986543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.50  E-value=1.2e-13  Score=119.32  Aligned_cols=115  Identities=16%  Similarity=0.325  Sum_probs=96.4

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++++++.+++++.+|++.|.+++++++||++    ++   +++|++|..||++.+.....      .....         
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~---------   74 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDT---------   74 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGS---------
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccC---------
Confidence            6789999999999999999999999999993    46   79999999999865432110      01122         


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                         +++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|+||.+|+++...+
T Consensus        75 ---~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           75 ---QVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ---BGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ---CHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence               34555888999999999999999999999999999999 7999999999999986644

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.50  E-value=1.2e-13  Score=135.69  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=123.3

Q ss_pred             CeEEEEeeHHHHHHHHHHhcCC---------CCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHH
Q 010821          219 ARFVGVLSASDFILILRELGNH---------GSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK  289 (500)
Q Consensus       219 ~~~vGilt~~Dii~il~~~~~~---------~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~  289 (500)
                      ..++.-++..|+++++..+...         +.....+.+..+.......+...+.++...+|.+|.++++++.+++++.
T Consensus        78 ~~ll~~l~~d~~~~ll~~l~~d~~~~ll~~l~~~~~~~i~~~l~~~e~~~i~~ll~~~~~~v~~iM~~~~~~v~~~~tv~  157 (286)
T 2oux_A           78 KDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVR  157 (286)
T ss_dssp             THHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTTSCTTBHHHHCBSCCCEECSSSBHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhcCChHHHHHhCCCCceEECCCCcHH
Confidence            4556666666766666544210         0000011122233333333444455666667788999999999999999


Q ss_pred             HHHHHHHhc-----CCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCC
Q 010821          290 DVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP  364 (500)
Q Consensus       290 ~a~~~m~~~-----~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~  364 (500)
                      +|++.|.++     +++++||++   +++   +++|++|.+|++..             ....++            +++
T Consensus       158 ea~~~~~~~~~~~~~~~~~pVvd---~~~---~lvGivt~~dll~~-------------~~~~~v------------~~i  206 (286)
T 2oux_A          158 SAMYVLKNQADMAETIYYVYVVD---QEN---HLVGVISLRDLIVN-------------DDDTLI------------ADI  206 (286)
T ss_dssp             HHHHHHHHHCSSCSCCSEEEEEC---TTC---BEEEEEEHHHHTTS-------------CTTSBH------------HHH
T ss_pred             HHHHHHHHcccCccceeEEEEEc---CCC---eEEEEEEHHHHHcC-------------CCCCcH------------HHH
Confidence            999999997     888999993   345   79999999999742             012334            344


Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      |.++++++++++++.+|+++|.+++++.+||+|++|+++|+||..|++..+...
T Consensus       207 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          207 LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            888899999999999999999999999999999999999999999999876543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.50  E-value=1.6e-13  Score=119.65  Aligned_cols=119  Identities=20%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++++.....      .....++.++ 
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~-   82 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEA-   82 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH-
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc---CCC---cEEEEEcHHHHHHHhccccc------ccCCccHHHH-
Confidence            4667899999999999999999999999999993   346   79999999999987653210      1112333332 


Q ss_pred             ccccCcccCCCCCC------CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          354 VGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       354 i~~~~~~v~d~m~~------~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                                 |.+      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        83 -----------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           83 -----------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -----------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----------HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                       543      5789999999999999999999999999998899999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.50  E-value=8.3e-14  Score=122.53  Aligned_cols=132  Identities=16%  Similarity=0.258  Sum_probs=98.2

Q ss_pred             ccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          274 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       274 ~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +|.+  +++++.+++++.+|+++|.+++++++||++   +++   +++|++|..||++++......     ..+.. ...
T Consensus        10 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~~-~~~   77 (152)
T 4gqw_A           10 FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVID---EDW---KLVGLVSDYDLLALDSGDSTW-----KTFNA-VQK   77 (152)
T ss_dssp             TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHTTCC----CC-----HHHHH-HHT
T ss_pred             ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEe---CCC---eEEEEEEHHHHHHhhcccCcc-----cchHH-HHH
Confidence            4655  799999999999999999999999999993   345   799999999998643211100     00000 000


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      ........+++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.+..
T Consensus        78 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           78 LLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             C-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            000001113455588888999999999999999999999999999999999999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.50  E-value=2.6e-13  Score=120.67  Aligned_cols=133  Identities=14%  Similarity=0.196  Sum_probs=100.2

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCce-eeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVAT-VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~-lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      .+|.++++++.+++++.+|+++|.+++++. +||++  .  +   +++|++|..||++++...+.........+..... 
T Consensus        20 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd--~--~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~-   91 (157)
T 1o50_A           20 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR--D--N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK-   91 (157)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE--T--T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC-
T ss_pred             hcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEE--C--C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH-
Confidence            358889999999999999999999999999 99994  2  2   5999999999998765321000000000000000 


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                         .....+++++|.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+.+
T Consensus        92 ---~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           92 ---RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             ---CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ---HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence               0011244566888 9999999999999999999999999999988999999999999986654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.49  E-value=1.2e-13  Score=121.73  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=96.6

Q ss_pred             cccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccc
Q 010821          273 KAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  350 (500)
Q Consensus       273 ~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~  350 (500)
                      .+|.+  +++++.+++++.+|+++|.+++++.+||++   +++   +++|++|..||++++....       .....++.
T Consensus        32 dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~   98 (149)
T 3k2v_A           32 DIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD---DDM---NIIGIFTDGDLRRVFDTGV-------DMRDASIA   98 (149)
T ss_dssp             GTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC---TTC---BEEEEEEHHHHHHHHCSSS-------CCTTCBHH
T ss_pred             HHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---cEEEEecHHHHHHHHhcCC-------CcccCcHH
Confidence            35777  899999999999999999999999999993   346   7999999999998765321       11233444


Q ss_pred             cccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821          351 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  413 (500)
Q Consensus       351 ~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  413 (500)
                      +            +|.++++++.+++++.+|+++|.+++++.+||+|++ +++|+||..||++
T Consensus        99 ~------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           99 D------------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             H------------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             H------------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            3            487888999999999999999999999999999965 9999999999863

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.49  E-value=1.9e-13  Score=133.58  Aligned_cols=134  Identities=15%  Similarity=0.238  Sum_probs=110.2

Q ss_pred             chhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCceEEEEEehhhH
Q 010821          253 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGI  327 (500)
Q Consensus       253 ~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~~~~~~liGivs~~dI  327 (500)
                      .......+...+.++...+|.+|.++++++.+++++.+|++.|.++     +++++||++   +++   +++|++|.+|+
T Consensus       119 ~~~~~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd---~~~---~lvGivt~~dl  192 (278)
T 2yvy_A          119 DPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDL  192 (278)
T ss_dssp             CHHHHHHHHHHHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEEC---TTC---BEEEEEEHHHH
T ss_pred             CHHHHHHHHHHHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEEC---CCC---CEEEEEEHHHH
Confidence            3344445555566777777889999999999999999999999987     789999993   345   79999999999


Q ss_pred             HHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 010821          328 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC  407 (500)
Q Consensus       328 l~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis  407 (500)
                      +..             ....            +++++|.++++++++++++.+|+++|.+++.+.+||+|++|+++|+||
T Consensus       193 l~~-------------~~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT  247 (278)
T 2yvy_A          193 IVA-------------DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVT  247 (278)
T ss_dssp             HHS-------------CTTC------------BSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEE
T ss_pred             hcC-------------CCCC------------cHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEE
Confidence            842             0112            345668888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 010821          408 RSDITALAKD  417 (500)
Q Consensus       408 ~~Di~~~~~~  417 (500)
                      ..|++..+..
T Consensus       248 ~~Dil~~i~~  257 (278)
T 2yvy_A          248 VDDVLDVLEA  257 (278)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            9999986544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.48  E-value=3.6e-13  Score=119.44  Aligned_cols=124  Identities=15%  Similarity=0.245  Sum_probs=98.6

Q ss_pred             cccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccc
Q 010821          273 KAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  350 (500)
Q Consensus       273 ~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~  350 (500)
                      .+|.+  +++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++++......  ........   
T Consensus        15 ~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~--~~~~~~~~---   83 (157)
T 2emq_A           15 PFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD---TSY---KLHGLISMTMMMDAILGLERI--EFERLETM---   83 (157)
T ss_dssp             TTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEEC---TTC---CEEEEEEHHHHHHHSBCSSSB--CGGGGGTC---
T ss_pred             hhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEc---CCC---CEEEEeeHHHHHHHHhccccc--chHHhcCC---
Confidence            35664  789999999999999999999999999993   345   799999999999765421000  00000111   


Q ss_pred             cccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          351 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       351 ~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                               +++++|.++++++.+++++.+|+++|.++++  +||+|++|+++|+||.+|+++.....
T Consensus        84 ---------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           84 ---------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             ---------BGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             ---------cHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                     4456688899999999999999999999987  99999889999999999999876543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.47  E-value=3.4e-13  Score=123.29  Aligned_cols=119  Identities=14%  Similarity=0.181  Sum_probs=99.5

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++.....      .....     
T Consensus        13 ~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd---~~g---~~vGivt~~dl~~~~~~~~~------~~~~~-----   75 (184)
T 1pvm_A           13 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD---DNG---NDVGLLSERSIIKRFIPRNK------KPDEV-----   75 (184)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHTGGGCC------CGGGS-----
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHhhccc------CcccC-----
Confidence            35778899999999999999999999999999993   345   79999999999986643200      01112     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                             +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+
T Consensus        76 -------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           76 -------PIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             -------BGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             -------CHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence                   34555888899999999999999999999999999999889999999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=1.3e-13  Score=146.81  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             ccCCCCCCCceEecCC-CCHHHHHHHHHHCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRRPLAMLRPS-ASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +|+++|.++++++.++ +++.+|+++|.+++++++||+| ++++++|+||.+||++.+..+..    ....+|.+     
T Consensus       385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~----~~~~~V~~-----  455 (527)
T 3pc3_A          385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR----QQSDPAIK-----  455 (527)
T ss_dssp             BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----CTTSBGGG-----
T ss_pred             cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC----cCCCcHHH-----
Confidence            6788899999999999 9999999999999999999999 78999999999999976544311    22466776     


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCC---CCeEEEEEehHHHHHHhh
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG---SKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~---~g~liGiIS~~DIl~~l~  499 (500)
                              +|.++++++.+++++.+|+++|.++++  +||||++   .|+++||||+.||++++.
T Consensus       456 --------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~  510 (527)
T 3pc3_A          456 --------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIA  510 (527)
T ss_dssp             --------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHH
T ss_pred             --------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHH
Confidence                    557899999999999999999987765  7999952   289999999999999875

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.47  E-value=3.1e-13  Score=120.66  Aligned_cols=123  Identities=13%  Similarity=0.157  Sum_probs=96.3

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCC-CCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS-QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~-~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++  + +++   +++|++|..||++++.......   ......++.++
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd--~~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~~~   89 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE--STESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQDI   89 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES--CTTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHHH
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe--cCCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhhhh
Confidence            3677899999999999999999999999999993  3 256   7999999999998775321110   01112223222


Q ss_pred             cccccCcccCCCCCCC------ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRP------LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~------~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                                  |..+      ++++.+++++.+|+++|.+++++.+||+| +|+++|+||.+||++....
T Consensus        90 ------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           90 ------------LARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             ------------HHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ------------hcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                        4333      78899999999999999999999999999 7999999999999986554

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.46  E-value=3.8e-13  Score=119.45  Aligned_cols=116  Identities=14%  Similarity=0.228  Sum_probs=97.9

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821          277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  356 (500)
Q Consensus       277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  356 (500)
                      ++++++.+++++.+|+++|.+++++++||.  +  ++   +++|++|..||++++......      ....++       
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~--~--~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v-------   80 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV--D--GD---DIAGIVTERDYARKVVLQERS------SKATRV-------   80 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEE--S--SS---SEEEEEEHHHHHHHSGGGTCC------SSSCBH-------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEe--e--CC---EEEEEEEHHHHHHHHHhccCC------ccccCH-------
Confidence            568999999999999999999999999997  2  45   799999999999876543211      112334       


Q ss_pred             cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                           +++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|+||.+||++.+...
T Consensus        81 -----~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           81 -----EEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             -----HHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             -----HHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence                 344888899999999999999999999999999999 79999999999999977654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.46  E-value=6.4e-14  Score=120.70  Aligned_cols=116  Identities=19%  Similarity=0.319  Sum_probs=95.3

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHH-HHHhhcccCCCCccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++ ++.....       ....++   
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~~-------~~~~~v---   76 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICG---DDD---RLHGMLTDRDIVIKGLAAGLD-------PNTATA---   76 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEEC---GGG---BEEEEEEHHHHHHTTGGGTCC-------TTTSBH---
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEEC---CCC---eEEEEEeHHHHHHHHHhcCCC-------ccccCH---
Confidence            3666889999999999999999999999999993   345   7999999999984 4432110       012233   


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                               +++|.++++++.+++++.+|+++|.+++.+.+||+|+ |+++|+||.+|+++.+
T Consensus        77 ---------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           77 ---------GELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             ---------HHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ---------HHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                     4447788999999999999999999999999999997 9999999999998753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.45  E-value=8.4e-13  Score=126.55  Aligned_cols=141  Identities=11%  Similarity=0.105  Sum_probs=102.2

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCC-----------
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-----------  340 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~-----------  340 (500)
                      +.+|.++++++.+++++.+|+++|.+++++++||++. .+++   +++|+||.+||++++.........           
T Consensus        16 ~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~   91 (250)
T 2d4z_A           16 GDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEE   91 (250)
T ss_dssp             TSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC
T ss_pred             HHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccc
Confidence            4568999999999999999999999999999999942 2235   799999999999887643210000           


Q ss_pred             ----------------Cccccccc--------------------------------------------------cc--cc
Q 010821          341 ----------------SLPILKLP--------------------------------------------------IC--AI  352 (500)
Q Consensus       341 ----------------~~~~l~~~--------------------------------------------------v~--~l  352 (500)
                                      ...++...                                                  ..  ++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  171 (250)
T 2d4z_A           92 GRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEML  171 (250)
T ss_dssp             ---------------------------------------------------------------------------CCSCC
T ss_pred             ccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccccc
Confidence                            00000000                                                  00  00


Q ss_pred             cc---cc-----cCccc--C-CCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PV---GT-----WVPKI--G-EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i---~~-----~~~~v--~-d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      ..   ..     ....|  . .+|.+.++++.+++++.+|..+|...+++++||++ +|+++|+||+.||++++..
T Consensus       172 ~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          172 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            00   00     01122  2 35788899999999999999999999999999997 6999999999999987653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.45  E-value=3.4e-13  Score=122.34  Aligned_cols=137  Identities=19%  Similarity=0.285  Sum_probs=97.7

Q ss_pred             cCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccC--CCCcccccccc-
Q 010821          275 FPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC--SSSLPILKLPI-  349 (500)
Q Consensus       275 ~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~--~~~~~~l~~~v-  349 (500)
                      |.+  +++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++.......  ....+...... 
T Consensus        10 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T 3sl7_A           10 MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID---DNW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK   83 (180)
T ss_dssp             SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHTCC-------------------CCC
T ss_pred             cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---eEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence            555  789999999999999999999999999993   345   7999999999985332110000  00000000000 


Q ss_pred             -----ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          350 -----CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       350 -----~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                           ..+.......+++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.+..
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           84 TFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             SHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                 00000011124566688889999999999999999999999999999999999999999999986543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.45  E-value=7.1e-13  Score=138.95  Aligned_cols=163  Identities=15%  Similarity=0.203  Sum_probs=124.5

Q ss_pred             EeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhc-----
Q 010821          224 VLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----  298 (500)
Q Consensus       224 ilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----  298 (500)
                      -++..|+.+++..+.........+-+..++..+...+...+.++...+|.+|.++++++.+++++.+|++.|.++     
T Consensus       110 ~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~  189 (473)
T 2zy9_A          110 ELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAE  189 (473)
T ss_dssp             HSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCS
T ss_pred             hCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcC
Confidence            355566666665552210001122333444555566666677888888999999999999999999999999986     


Q ss_pred             CCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCH
Q 010821          299 EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL  378 (500)
Q Consensus       299 ~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l  378 (500)
                      +++++||++   +++   +++|++|.+|++..             ..+.+            ++++|.++++++++++++
T Consensus       190 ~~~~ipVvd---~~~---~lvGiVt~~Dll~~-------------~~~~~------------v~dim~~~~~~v~~~~~l  238 (473)
T 2zy9_A          190 TIYYIYVVD---EKG---RLKGVLSLRDLIVA-------------DPRTR------------VAEIMNPKVVYVRTDTDQ  238 (473)
T ss_dssp             EEEEEEEEC---TTS---BEEEEEEHHHHHHS-------------CTTSB------------GGGTSBSSCCCEESSSBH
T ss_pred             ceeEEEEEC---CCC---cEEEEEEHHHHhcC-------------CCCCc------------HHHHhCCCCeEEeCCCcH
Confidence            589999993   335   79999999999841             01223            345588899999999999


Q ss_pred             HHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          379 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       379 ~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      .+++++|.+++.+.+||+|++|+++|+||.+|++.....
T Consensus       239 ~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          239 EEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            999999999999999999999999999999999986644

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.44  E-value=3.7e-13  Score=119.85  Aligned_cols=121  Identities=9%  Similarity=0.153  Sum_probs=96.5

Q ss_pred             cCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          275 FPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       275 ~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      |.+  +++++.+++++.+|+++|.+++++++||++   +++   +++|++|..||++++......  ........     
T Consensus        20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~--~~~~~~~~-----   86 (159)
T 1yav_A           20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSY---RLHGLIGTNMIMNSIFGLERI--EFEKLDQI-----   86 (159)
T ss_dssp             SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTC---BEEEEEEHHHHHHHHBCSSSB--CGGGTTTS-----
T ss_pred             hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---CEEEEeEHHHHHHHhhhhccc--chhhhccC-----
Confidence            555  788999999999999999999999999993   345   799999999999876432100  00001122     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                             .++++|.++++++.+++++.+|+++|.++++  +||+|++|+++|+||.+|+++....
T Consensus        87 -------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           87 -------TVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             -------BHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             -------CHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                   3344588889999999999999999998876  9999989999999999999987654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.43  E-value=1.5e-12  Score=118.70  Aligned_cols=134  Identities=10%  Similarity=0.109  Sum_probs=99.4

Q ss_pred             ceec--CCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCC----ccccccccccc
Q 010821          279 LVYA--GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKLPICAI  352 (500)
Q Consensus       279 ~v~v--~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~----~~~l~~~v~~l  352 (500)
                      ++++  .+++++.+|+++|.+++++++||++. ++++   +++|++|..|+++++..........    ...+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7888  99999999999999999999999931 2456   7999999999999876532110000    00000000000


Q ss_pred             ccc-ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVG-TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~-~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      ... ....+++++|.++++++.+++++.+|+++|.+++++.+||+| +|+++|+||.+||++.+..
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            000 111256677888899999999999999999999999999999 8999999999999986654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.42  E-value=2.3e-12  Score=123.31  Aligned_cols=210  Identities=11%  Similarity=0.172  Sum_probs=127.4

Q ss_pred             ccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhh
Q 010821          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL  249 (500)
Q Consensus       170 ~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l  249 (500)
                      .++.|+|-  .+++++..+.++.+|++.|.++     ++..+||+|.+ ++++|++|..|++..+......    .....
T Consensus         7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~-----~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~----~~~~~   74 (245)
T 3l2b_A            7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDK-----NLKSIPVADGN-NHLLGMLSTSNITATYMDIWDS----NILAK   74 (245)
T ss_dssp             CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHT-----TCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCT----THHHH
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHc-----CCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhh----hhhhh
Confidence            35667763  4688999999999999999999     99999999964 7999999999999877532110    00111


Q ss_pred             cccchhHHHHHHHhhcccc-CC-----------------C-CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCC
Q 010821          250 ETHTISAWKEGKAYLNRQI-DS-----------------H-GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS  310 (500)
Q Consensus       250 ~~~~i~~~~~~~~~~~~~~-~~-----------------~-g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~  310 (500)
                      ...+...+.+......... ..                 . ..+....++.+.   .-.++...+.+++++.+++.....
T Consensus        75 ~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~~~~~liit~~~~  151 (245)
T 3l2b_A           75 SATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIELKVSLLIVTGGHT  151 (245)
T ss_dssp             TTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHTTCSEEEECTTCC
T ss_pred             ccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHcCCCEEEECCCCC
Confidence            1222222222211100000 00                 0 001122233331   136788888999999888873110


Q ss_pred             CCC------CCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CCceEecCCCCHHHHHH
Q 010821          311 QDG------SFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALN  383 (500)
Q Consensus       311 ~~~------~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~~~~v~~~~~l~ea~~  383 (500)
                      -..      ....+-.+.+..|........         ....            +++++|+ +++.++.+++++.+|++
T Consensus       152 ~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~---------~~~~------------~v~~im~~~~~~~~~~~~~~~~~~~  210 (245)
T 3l2b_A          152 PSKEIIELAKKNNITVITTPHDSFTASRLI---------VQSL------------PVDYVMTKDNLVAVSTDDLVEDVKV  210 (245)
T ss_dssp             CCHHHHHHHHHHTCEEEECSSCHHHHHHHG---------GGGS------------BHHHHSBCTTCCCEETTSBHHHHHH
T ss_pred             CCHHHHHHHHHcCCeEEEeCCChHHHHHHH---------hcCC------------ceeeEecCCccEEECCCCcHHHHHH
Confidence            000      000123344444433221110         0012            3455598 89999999999999999


Q ss_pred             HHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          384 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       384 ~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      +|.+++++++||+|++|+++|+||.+|+++..
T Consensus       211 ~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          211 TMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             HHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            99999999999999999999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.42  E-value=4.1e-13  Score=140.77  Aligned_cols=116  Identities=18%  Similarity=0.295  Sum_probs=102.3

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      +++++|.+++++++++.++.+|++.|.++     +++++||+|++++++|+++.+|++..  .        .+.++.+  
T Consensus       156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--~--------~~~~v~d--  223 (473)
T 2zy9_A          156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--D--------PRTRVAE--  223 (473)
T ss_dssp             BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS--C--------TTSBGGG--
T ss_pred             CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC--C--------CCCcHHH--
Confidence            45677999999999999999999999886     57899999998999999999999762  1        1356766  


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                 +|.++++++++++++.+|++.|.+++.+.+||||+ +|+++|+||..||++.+.
T Consensus       224 -----------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             -----------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             -----------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence                       55778999999999999999999999999999995 799999999999998763

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.38  E-value=2e-12  Score=136.40  Aligned_cols=114  Identities=18%  Similarity=0.304  Sum_probs=101.1

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      ++.|..+++++.+++++.+++++|.+++++++||+|+  +++++|+||.+|+...   .      ..+.++.++|     
T Consensus       116 ~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~------~~~~~V~~vM-----  181 (511)
T 3usb_A          116 ESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q------DYSIKISDVM-----  181 (511)
T ss_dssp             SSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C------CSSSBHHHHC-----
T ss_pred             ccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c------cCCCcHHHhc-----
Confidence            3447778899999999999999999999999999998  8999999999999641   1      1257788755     


Q ss_pred             CCCcccccCC-CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              .+ +++++++++++.+++++|.+++++.+||||+ +|+++|+||+.||++.+
T Consensus       182 --------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          182 --------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             --------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHH
T ss_pred             --------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhh
Confidence                    55 8999999999999999999999999999995 79999999999999876

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.37  E-value=1.1e-13  Score=150.16  Aligned_cols=137  Identities=14%  Similarity=0.050  Sum_probs=101.9

Q ss_pred             ccCCCCC--CCceEecCCCCHHHHHHHHH-HCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-C---------cc
Q 010821          360 KIGEPNR--RPLAMLRPSASLSAALNLLV-QAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-N---------LS  426 (500)
Q Consensus       360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~-~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-~---------~~  426 (500)
                      +++|+|.  +++.++++++++.|+.+.|. +++++.+||+|++++++|+|+++|+.+.......... .         ..
T Consensus       454 ~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~  533 (632)
T 3org_A          454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLD  533 (632)
T ss_dssp             BHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC------------------
T ss_pred             cHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccC
Confidence            6778898  88999999999999999999 7999999999999999999999999875443210000 0         00


Q ss_pred             c----ccHHHHHhcC----------------CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEE
Q 010821          427 E----MTIHQALQLG----------------QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE  486 (500)
Q Consensus       427 ~----~~v~~~l~~~----------------~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~li  486 (500)
                      .    ..+.......                ...+...++|+++++++++++++.+|++.|.+++++++||+|  +|+++
T Consensus       534 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~lv  611 (632)
T 3org_A          534 AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKLV  611 (632)
T ss_dssp             -------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEEE
T ss_pred             HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEEE
Confidence            0    0011110000                000012358999999999999999999999999999999995  69999


Q ss_pred             EEEehHHHHHHh
Q 010821          487 GIVSLSDIFKFL  498 (500)
Q Consensus       487 GiIS~~DIl~~l  498 (500)
                      |+||++||++.+
T Consensus       612 GIVT~~Dll~~~  623 (632)
T 3org_A          612 GIVEREDVAYGY  623 (632)
T ss_dssp             EEEEGGGTEECC
T ss_pred             EEEehhhHHHHH
Confidence            999999998654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.31  E-value=7.1e-12  Score=132.34  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=100.9

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++|..+++++.+++++.+++++|.+++++.+||+|  ++++++|+||.+|++...         ..+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~---------~~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---------DYNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---------CSSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc---------cCCCcHHH-------
Confidence            455888899999999999999999999999999999  789999999999998531         01355555       


Q ss_pred             CCCcccccCC-CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|.+ +++++++++++.++++.|.+++.+++||||+ +|+++|+||..||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHh
Confidence                  5566 8899999999999999999999999999995 799999999999999764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.28  E-value=1e-11  Score=132.09  Aligned_cols=121  Identities=14%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             CcccCCCceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccc
Q 010821          272 GKAFPRPLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  350 (500)
Q Consensus       272 g~~~~~~~v~v~~~-~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~  350 (500)
                      +.+|.++++++.++ +++.+|+++|.+++++++||+  |.+++   +++|+||.+||++.+.....       ....++ 
T Consensus       387 ~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~~V-  453 (527)
T 3pc3_A          387 AELELPAPPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDG---SVLGVVGQETLITQIVSMNR-------QQSDPA-  453 (527)
T ss_dssp             GGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTC---CEEEEEEHHHHHHHHHHHCC-------CTTSBG-
T ss_pred             HHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCC---EEEEEEEHHHHHHHHHhccC-------cCCCcH-
Confidence            45688899999999 999999999999999999999  32355   79999999999988765311       112334 


Q ss_pred             cccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC----CcEEEEEeHHHHHHHHHcc
Q 010821          351 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----DSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       351 ~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~----g~lvGiis~~Di~~~~~~~  418 (500)
                                 +++|.++++++.+++++.+++++|.+++  .+||+|++    |+++|+||..||++.+.+.
T Consensus       454 -----------~~im~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          454 -----------IKALNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             -----------GGGEETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             -----------HHHhcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence                       4448889999999999999999997665  47999984    8999999999999977654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.27  E-value=1.7e-12  Score=136.55  Aligned_cols=114  Identities=16%  Similarity=0.271  Sum_probs=86.5

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      +++|..+++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+...   .      ..+.++.++        
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~------~~~~~v~di--------  154 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T------DLTKSVAAV--------  154 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C------CTTSBGGGT--------
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c------cCCCcHHHH--------
Confidence            44577889999999999999999999999999999999999999999999621   1      124567764        


Q ss_pred             CcccccC-C-CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          442 SPYELRS-Q-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       442 ~~~~im~-~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                           |. + +++++++++++.+++++|.+++++.+||||+ +|+++|+||+.||++..
T Consensus       155 -----M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          155 -----MTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             -----SEEGGGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----C
T ss_pred             -----hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhh
Confidence                 45 3 5899999999999999999999999999995 79999999999999863

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.27  E-value=5.8e-11  Score=125.27  Aligned_cols=155  Identities=14%  Similarity=0.211  Sum_probs=115.9

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCC-CCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS-QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~-~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .|..+++++.+++++.+|+++|.+++++++||++  + .++   +++|+||.+|++.       .     .....++.++
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd--~g~~~---~lvGiVt~rDl~~-------~-----~~~~~~V~~v  180 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVN--NLDER---KLVGIITNRDMRF-------I-----QDYSIKISDV  180 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEES--CTTTC---BEEEEEEHHHHTT-------C-----CCSSSBHHHH
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEe--cCCCC---EEEEEEEehHhhh-------h-----ccCCCcHHHh
Confidence            3667889999999999999999999999999994  2 145   7999999999962       0     1123344444


Q ss_pred             cccccCcccCCCCCC-CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHH
Q 010821          353 PVGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH  431 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~  431 (500)
                                  |.+ +++++++++++.+++++|.+++++.+||+|++|+++|+||..|+++.......         +.
T Consensus       181 ------------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---------~~  239 (511)
T 3usb_A          181 ------------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---------AK  239 (511)
T ss_dssp             ------------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---------CB
T ss_pred             ------------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---------hh
Confidence                        887 89999999999999999999999999999999999999999999987654211         11


Q ss_pred             HHHhcCCCCCCcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEe
Q 010821          432 QALQLGQDSYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVE  479 (500)
Q Consensus       432 ~~l~~~~~~~~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd  479 (500)
                      +.             +.+  -...+.......+.++.|.+.++..+.|-.
T Consensus       240 D~-------------~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          240 DK-------------QGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             CT-------------TSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             hh-------------ccceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence            10             011  122333344455666777888888766544

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.25  E-value=6e-13  Score=140.62  Aligned_cols=115  Identities=17%  Similarity=0.349  Sum_probs=4.7

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      +++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+.....         .+.++.++|       
T Consensus        98 ~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~im-------  161 (494)
T 1vrd_A           98 ENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKDLM-------  161 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHHHh-------
Confidence            4558888999999999999999999999999999998899999999999986311         135666654       


Q ss_pred             CcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          442 SPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       442 ~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            .+  +++++.+++++.+++++|.+++++++||||+ +|+++|+||..||++.+.
T Consensus       162 ------~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          162 ------TPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ------------------------------------------------------CHHHHT
T ss_pred             ------CCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhc
Confidence                  55  8999999999999999999999999999995 799999999999998864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.25  E-value=5.7e-13  Score=140.70  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      |.++++++.+++++.+|+++|.+++++++||+|++   ++++|+||.+|++..  ..      ....++.++|       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~~------~~~~~V~diM-------  167 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--LT------QTETKVSDMM-------  167 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--hc------cccCcHHHHh-------
Confidence            66788999999999999999999999999999987   899999999999864  11      1245677654       


Q ss_pred             CcccccCCC--ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          442 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       442 ~~~~im~~~--~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            .++  ++++++++++.+|+++|.+++++.+||||+ +|+++|+||++||++.+.
T Consensus       168 ------~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          168 ------TPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ------CCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhh
Confidence                  555  999999999999999999999999999995 799999999999998764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.24  E-value=6.7e-13  Score=139.45  Aligned_cols=113  Identities=17%  Similarity=0.287  Sum_probs=1.0

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      +++|..+++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+.....         .+.++.++|       
T Consensus        91 ~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~vM-------  153 (490)
T 4avf_A           91 ETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAAIM-------  153 (490)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHHHh-------
Confidence            455777899999999999999999999999999999 899999999999964211         135677654       


Q ss_pred             CcccccC-C-CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          442 SPYELRS-Q-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       442 ~~~~im~-~-~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                            . + +++++++++++.+|+++|.+++++.+||||+ +|+++|+||+.||++.+
T Consensus       154 ------tp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          154 ------TPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ------ccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhc
Confidence                  5 3 6999999999999999999999999999995 79999999999999864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.16  E-value=2.9e-12  Score=131.95  Aligned_cols=109  Identities=22%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      |..+++++.|+.++.+|+++|.+++++.+||+++   +++|+||||.+|+...  +        ...+|.++        
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d--------~~~~V~ev--------  205 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D--------AETPIKSV--------  205 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c--------cceEhhhh--------
Confidence            4457889999999999999999999999999986   6799999999998652  1        13567764        


Q ss_pred             CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821          442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  497 (500)
Q Consensus       442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~  497 (500)
                           |++++++++.+.++.+|.++|.++++..|||||+ +++|+|+||+.||++.
T Consensus       206 -----MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          206 -----MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             -----cccceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhh
Confidence                 4778999999999999999999999999999996 7999999999999875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.12  E-value=4.5e-12  Score=133.80  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=18.4

Q ss_pred             cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      |.++++++.+++|+.+|+++|.+++++++||++  ++  .+   +++|+||.+|++.. .          .....     
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd--~~~~~g---~lvGiVt~~Dl~~~-~----------~~~~~-----  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTD--DGTPHG---VLLGLVTQRDYPID-L----------TQTET-----  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEE--CCCcCC---eEEEEEEHHHHHhh-h----------ccccC-----
Confidence            667899999999999999999999999999994  22  25   79999999999842 0          01122     


Q ss_pred             cccccCcccCCCCCCC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccH
Q 010821          353 PVGTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI  430 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v  430 (500)
                             +++++|.++  ++++++++++.+|+++|.+++++.+||+|++|+++|+||.+||++.......    . ....
T Consensus       162 -------~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~----~-~d~~  229 (503)
T 1me8_A          162 -------KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE----L-VDSQ  229 (503)
T ss_dssp             -------------------------------------------------------------------CCC----C-BCTT
T ss_pred             -------cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc----h-hccc
Confidence                   345558877  9999999999999999999999999999999999999999999986543211    0 0000


Q ss_pred             HHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEE
Q 010821          431 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI  477 (500)
Q Consensus       431 ~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~V  477 (500)
                      ..             ++  ....+.. ....+.++.|.+.+++.+.|
T Consensus       230 ~~-------------l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          230 KR-------------YL--VGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             SC-------------BC--CEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cc-------------cc--cccccCc-hhHHHHHHHHHhhhccceEE
Confidence            00             11  1123344 56667788888888886544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.10  E-value=8.9e-10  Score=116.22  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=98.5

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|..+++++.+++++.+|+++|.+++++++||++. .+++   +++|+||.+|++..     .       ....      
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~-----~-------~~~~------  152 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI-----S-------DYNA------  152 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC-----S-------CSSS------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh-----c-------cCCC------
Confidence            47778999999999999999999999999999931 0345   79999999999842     0       0122      


Q ss_pred             ccccCcccCCCCCC-CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          354 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       354 i~~~~~~v~d~m~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                            +++++|.+ +++++++++++.+++++|.+++++.+||+|++|+++|++|..||++....
T Consensus       153 ------~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          153 ------PISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ------BTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                  34566887 88999999999999999999999999999999999999999999987653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.10  E-value=6.3e-11  Score=128.58  Aligned_cols=134  Identities=15%  Similarity=0.105  Sum_probs=96.9

Q ss_pred             ccC--CCceecCCCCcHHHHHHHHH-hcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCc--------
Q 010821          274 AFP--RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--------  342 (500)
Q Consensus       274 ~~~--~~~v~v~~~~sl~~a~~~m~-~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~--------  342 (500)
                      +|.  ++++++++++++.|+.+.|. +++.+++||+|   +++   +++|++|.+|+++.+.+.........        
T Consensus       458 iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd---~~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~  531 (632)
T 3org_A          458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID---ANG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVL  531 (632)
T ss_dssp             HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBC---TTC---BBCCEESHHHHTTTTTTC----------------
T ss_pred             HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEe---cCC---eEEEEEEHHHHHHHHHHHhhhcccccccccceec
Confidence            467  78999999999999999999 79999999994   245   79999999999977654321100000        


Q ss_pred             ---ccccccccccc-----------------ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcE
Q 010821          343 ---PILKLPICAIP-----------------VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  402 (500)
Q Consensus       343 ---~~l~~~v~~l~-----------------i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l  402 (500)
                         ..+.+.+..+.                 +-...++++++|+++++++++++++.+|+++|.+++++.+||+ ++|++
T Consensus       532 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~l  610 (632)
T 3org_A          532 LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKL  610 (632)
T ss_dssp             ---------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEE
T ss_pred             cCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEE
Confidence               00000011100                 0001113788999999999999999999999999999999999 68999


Q ss_pred             EEEEeHHHHHHH
Q 010821          403 LDIYCRSDITAL  414 (500)
Q Consensus       403 vGiis~~Di~~~  414 (500)
                      +|+||++|+++.
T Consensus       611 vGIVT~~Dll~~  622 (632)
T 3org_A          611 VGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEGGGTEEC
T ss_pred             EEEEehhhHHHH
Confidence            999999999763

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.10  E-value=1.5e-11  Score=126.68  Aligned_cols=162  Identities=22%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCC---CCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCC
Q 010821          210 MAPLWDFSKARFVGVLSASDFILILRELGNH---GSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  286 (500)
Q Consensus       210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~---~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~  286 (500)
                      .+|++.+.    .--+|..+.+-.+.+.+.-   +.+++.++-    ...++.+++..      .  .+-.+++++.|+.
T Consensus        92 ~iPlvSA~----MDTVTe~~MAIamAr~GGiGvIH~n~sie~Q----a~~V~~VKr~e------~--g~i~dPvtl~P~~  155 (556)
T 4af0_A           92 NTPFLSSP----MDTVTEDRMAIALALHGGLGIIHHNCSAEEQ----AAMVRRVKKYE------N--GFITDPLCLGPDA  155 (556)
T ss_dssp             SSCEEECC----CTTTCSHHHHHHHHHTTCEEEECCSSCHHHH----HHHHHHHHHCC------C---------------
T ss_pred             CCCEEecC----cccccCHHHHHHHHHCCCeEEEcCCCCHHHH----HHHHHHHHhcc------c--CccCCCeEcCCCC
Confidence            46887652    3346777777666655421   134433221    22334444322      1  1445689999999


Q ss_pred             cHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC
Q 010821          287 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  366 (500)
Q Consensus       287 sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~  366 (500)
                      |+.+|.++|.+++++.+||++....++   +|+||+|.+|+. +     .       ....+            ++++|+
T Consensus       156 Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f-----~-------d~~~~------------V~evMT  207 (556)
T 4af0_A          156 TVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-F-----Q-------DAETP------------IKSVMT  207 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-c-----c-------ccceE------------hhhhcc
Confidence            999999999999999999995322345   899999999974 1     1       11233            455599


Q ss_pred             CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      ++++++++..++.+|.++|.++++..+||||++++|+|+||++|+.+..
T Consensus       208 ~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          208 TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------
T ss_pred             cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence            9999999999999999999999999999999999999999999998754

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.08  E-value=2.3e-10  Score=124.77  Aligned_cols=79  Identities=24%  Similarity=0.429  Sum_probs=65.2

Q ss_pred             eeeEEEEecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCe----eeCCCC
Q 010821           25 LIPMRFVWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF----ISSEYG   99 (500)
Q Consensus        25 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~----~~~~~g   99 (500)
                      ..-+.|.||.+|+.|+|+|+||+|.+. .+|.+   .++.|++++.||||.|+|||+|||+|..||.+|.    ..++++
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~---~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~   92 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ---EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYK   92 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE---CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGT
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE---cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCcC
Confidence            467889999999999999999999985 35544   4689999999999999999999999999999983    445555


Q ss_pred             CeeeEEE
Q 010821          100 IVNTVLL  106 (500)
Q Consensus       100 ~~nn~l~  106 (500)
                      ..+.+..
T Consensus        93 ~~~~~~~   99 (645)
T 4aef_A           93 FHREVNV   99 (645)
T ss_dssp             EEEEEEE
T ss_pred             cccceee
Confidence            5555443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.07  E-value=1.8e-12  Score=137.62  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+......       ....++.++|   
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~vm---  179 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSEVM---  179 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHHHh---
Confidence            35568888899999999999999999999999999997   5899999999999764210       1235666644   


Q ss_pred             CCCCCcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          438 QDSYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       438 ~~~~~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                                .+  +++++.+++++.+|+++|.+++.+++||||+ +|+++|+||++||++.+
T Consensus       180 ----------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          180 ----------TPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCC
T ss_pred             ----------CCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHh
Confidence                      55  8999999999999999999999999999995 79999999999987654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.02  E-value=3.1e-11  Score=127.01  Aligned_cols=109  Identities=17%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             CCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCc
Q 010821          364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSP  443 (500)
Q Consensus       364 ~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  443 (500)
                      .|..+++++.+++++.+++++|.+++++.+||+|+ ++++|+|+.+|++.   .        ...++.++          
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~--------~~~~v~~i----------  155 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R--------EGKLVKEL----------  155 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C--------CCCCHHHH----------
Confidence            46678899999999999999999999999999997 99999999999975   1        13566664          


Q ss_pred             ccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          444 YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       444 ~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                         |.++++++++++++.++++.|.+++++.+||||+ +|+++|+||..||++.+
T Consensus       156 ---m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          156 ---MTKEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             ---ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhh
Confidence               4668899999999999999999999999999995 79999999999999865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.02  E-value=1.2e-10  Score=122.35  Aligned_cols=112  Identities=17%  Similarity=0.201  Sum_probs=82.7

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      .|..+++++.+++++.+|+++|.+++++++||++   +++   +++|+||.+|++.      .      .....++    
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd---~~~---~lvGiVt~rDL~~------~------~~~~~~v----  151 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVT---ENN---ELVGIITGRDVRF------V------TDLTKSV----  151 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC---SSS---BEEEEEEHHHHTT------C------CCTTSBG----
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEc---cCC---EEEEEEEHHHHhh------c------ccCCCcH----
Confidence            4677899999999999999999999999999994   245   7999999999861      1      1112333    


Q ss_pred             ccccCcccCCCCC-C-CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          354 VGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       354 i~~~~~~v~d~m~-~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                              .++|+ + +++++++++++.+++++|.++++..+||+|++|+++|+||..|+++..
T Consensus       152 --------~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          152 --------AAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             --------GGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             --------HHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                    44487 4 589999999999999999999999999999999999999999998753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.99  E-value=1.8e-10  Score=120.92  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=0.0

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      .|..+++++.+++++.+|+++|.+++++++||+  |  ++   +++|+||.+|+...            .....      
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVv--d--~g---~lvGIVt~rDl~~~------------~~~~~------  147 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVV--E--QG---ELVGIVTGRDLRVK------------PNAGD------  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEE--E--CC---EEEEEEEhHHhhhc------------cccCC------
Confidence            466788999999999999999999999999999  3  45   79999999998521            01122      


Q ss_pred             ccccCcccCCCCC-C-CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          354 VGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       354 i~~~~~~v~d~m~-~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                            +++++|+ + +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++...
T Consensus       148 ------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 ------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  3455588 4 6999999999999999999999999999999999999999999998653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.95  E-value=1.5e-10  Score=122.22  Aligned_cols=114  Identities=18%  Similarity=0.317  Sum_probs=5.0

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++.+||++   +++   +++|+||.+|+++.      .      ....      
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~lvGivt~~Dl~~~------~------~~~~------  155 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVD---EEG---RLVGLLTNRDVRFE------K------NLSK------  155 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEc---CCC---EEEEEEEHHHHHhh------c------CCCC------
Confidence            4677899999999999999999999999999993   345   79999999999741      0      0122      


Q ss_pred             ccccCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          354 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       354 i~~~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                            ++.++|.+  +++++.+++++.+++++|.+++++.+||+|++|+++|+||..|+++....
T Consensus       156 ------~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          156 ------KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------------------------------------CHHHHTC
T ss_pred             ------cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence                  34555887  89999999999999999999999999999999999999999999987643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.79  E-value=5.5e-10  Score=117.52  Aligned_cols=110  Identities=15%  Similarity=0.309  Sum_probs=0.4

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      .|..+++++.+++++.+++++|.+++++++||++  .  +   +++|+|+.+|++.      .        ...      
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd--~--~---~lvGivt~~Dl~~------~--------~~~------  150 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVE--D--E---KVVGIITKKDIAA------R--------EGK------  150 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEE--C--C---EEEEEEEHHHhcc------C--------CCC------
Confidence            4667899999999999999999999999999993  2  5   7999999999873      0        012      


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                            ++.++|.++++++++++++.+++++|.+++++.+||+|++|+++|+||.+||++...
T Consensus       151 ------~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          151 ------LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             --------------------------------------------------------------C
T ss_pred             ------CHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                  234558888999999999999999999999999999999999999999999998643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.78  E-value=1.1e-08  Score=77.58  Aligned_cols=62  Identities=16%  Similarity=0.334  Sum_probs=49.1

Q ss_pred             ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+....   .+..+.+++++|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~---~~~~~~~V~~iM   63 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKG---KNPKEVKVEEIM   63 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTT---CCGGGCBGGGTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcC---CCcccCCHHHhc
Confidence            57899999999999999999999999998 689999999999986432221   122346777643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.76  E-value=2.9e-10  Score=120.53  Aligned_cols=115  Identities=21%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +|.++++++.+++++.+|+++|.+++++.+||++  ++  ++   +++|+||.+|+.....          .....    
T Consensus       113 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~----  173 (514)
T 1jcn_A          113 GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITE--TGTMGS---KLVGIVTSRDIDFLAE----------KDHTT----  173 (514)
T ss_dssp             TSCSSCCCCCC-----------------CEESCC-------------CCEECTTTTC-----------------------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEe--CCCcCC---EEEEEEEHHHHHhhhh----------ccCCC----
Confidence            4667889999999999999999999999999994  32  35   7999999999864210          00112    


Q ss_pred             ccccccCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          352 IPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                              ++.++|.+  +++++.+++++.+++++|.+++++.+||+|++|+++|+||++|+++..
T Consensus       174 --------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          174 --------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             ---------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             --------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                    34555887  899999999999999999999999999999999999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.65  E-value=6.2e-08  Score=73.49  Aligned_cols=47  Identities=23%  Similarity=0.408  Sum_probs=43.7

Q ss_pred             ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          451 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       451 ~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ++++.+++++.+|+++|.+++++++||+|  +|+++||||.+||++.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            67899999999999999999999999999  589999999999997653

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.37  E-value=7.8e-07  Score=76.03  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             eeeEEEEecC---CCceEEEEEc---cCCCCCC--CCCCccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           25 LIPMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        25 ~~~~~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .+.++|.-..   .++.|+|+||   +.+|++.  ++|.+.+  .....|++++.||+| .++|||++
T Consensus         8 ~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            8 PSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            4667776543   3789999999   9999974  4887641  146899999999998 59999998

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.91  E-value=6.3e-06  Score=68.00  Aligned_cols=57  Identities=21%  Similarity=0.476  Sum_probs=43.4

Q ss_pred             eeeEEEEecC---CCceEEEEEcc---CCCCCC--CCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           25 LIPMRFVWPY---GGRSVFLSGSF---NRWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        25 ~~~~~f~~~~---~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .+.++|.-+.   .|++|+|+||.   .+|++.  ++|.+...  .++.|++++.||+| .++|||++
T Consensus         6 ~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v   73 (108)
T 1ac0_A            6 AVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             CCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEE
T ss_pred             eEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEE
Confidence            3566666443   37899999985   589964  58876421  35889999999998 59999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=97.72  E-value=9.6e-05  Score=75.55  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=65.8

Q ss_pred             eeeEEEEecCC-C-------ceEEEE--EccC---CCCCCCCCCcccCCCCeEEEEEEcCCceE-EEEEEEC--------
Q 010821           25 LIPMRFVWPYG-G-------RSVFLS--GSFN---RWSELLPMSPVEGCPTVFQIIWSIPPGYH-QYKFCVD--------   82 (500)
Q Consensus        25 ~~~~~f~~~~~-~-------~~V~l~--Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g~~-~ykf~VD--------   82 (500)
                      ...+||.|... |       ++|+|.  |..+   +|.+ .+|.|.. ..|+|+.++.||+|-| .|.|+||        
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~~-~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~  107 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRIA-GTDVWQWTTQLNANWRGSYCFIPTERDDIFSA  107 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEECT-TSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccCC-CCCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence            46799999876 4       789998  3222   1222 4688753 5799999999999999 9999999        


Q ss_pred             ----------------CEEeeCCCCCeeeCC-CCCeeeEEEeccCCCC
Q 010821           83 ----------------GEWRHDEHQPFISSE-YGIVNTVLLATEPNFM  113 (500)
Q Consensus        83 ----------------g~w~~d~~~~~~~~~-~g~~nn~l~v~~~~~~  113 (500)
                                      |..+.||.||..... .|...|++.+.+...+
T Consensus       108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~~  155 (403)
T 3c8d_A          108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPLQ  155 (403)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCCC
T ss_pred             ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCcC
Confidence                            778899999976543 4888999999876443

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.49  E-value=0.00025  Score=76.57  Aligned_cols=67  Identities=24%  Similarity=0.428  Sum_probs=52.5

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEE---CCEE--eeCCCCCeee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFIS   95 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V---Dg~w--~~d~~~~~~~   95 (500)
                      -++|+ |...|++|.|+|+|++|+.. .+|.+. ..+|+|++.++ +.+|. .|+|.|   ||++  ..||-.....
T Consensus        26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-~~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-CCCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            46776 99999999999999999754 688763 35699999998 77787 499998   6764  6777666543

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.40  E-value=0.00022  Score=77.91  Aligned_cols=66  Identities=33%  Similarity=0.600  Sum_probs=51.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEE---CCEE--eeCCCCCee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI   94 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V---Dg~w--~~d~~~~~~   94 (500)
                      -++|. |...|++|.|+|+||+|+.. .+|.+. +..|+|++.++ +.+|. .|||.|   ||+|  +.||-+...
T Consensus       137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~  210 (722)
T 3k1d_A          137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT  210 (722)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred             eEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence            46777 99999999999999999864 588764 23599999997 88885 588888   5654  677776644

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.39  E-value=0.00022  Score=78.44  Aligned_cols=63  Identities=25%  Similarity=0.443  Sum_probs=49.5

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-------cCCceEEEEEEEC---CEE--eeCCCCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCVD---GEW--RHDEHQP   92 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~g~~~ykf~VD---g~w--~~d~~~~   92 (500)
                      -++|. |...|++|+|+|+||+|+.. .+|.+  ...|+|++.++       +++|.+ |||.|+   |+|  +.||-..
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~--~~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEK--DKFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEE--CTTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeecee--CCCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            36776 99999999999999999864 68887  35699999998       677864 888885   455  3477554

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.35  E-value=0.011  Score=47.74  Aligned_cols=64  Identities=16%  Similarity=0.278  Sum_probs=47.9

Q ss_pred             eEEEEecCCCceEEEEEccC--CCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEECC--EEeeCCCCC
Q 010821           27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDG--EWRHDEHQP   92 (500)
Q Consensus        27 ~~~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VDg--~w~~d~~~~   92 (500)
                      .+++.|..++++|+|...+.  +|...  ++|.+. ..++.++.+++|+.| .++|+|. ||  .|-.+...-
T Consensus         6 ~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~-~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~N   76 (104)
T 2laa_A            6 KVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA-EISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKN   76 (104)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE-TTTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSC
T ss_pred             EEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc-cCCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCcc
Confidence            67788888999999999986  79874  367654 234533699999975 8999995 87  487765543

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.11  E-value=0.0035  Score=66.73  Aligned_cols=61  Identities=21%  Similarity=0.231  Sum_probs=50.1

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE-EeeCCCCCe
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-WRHDEHQPF   93 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~-w~~d~~~~~   93 (500)
                      -++|+ |...|++|.|+|.|+   ..++|.+.  .+|+|++.++ +.+|. .|+|.|||. ...||....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~--~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD--EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEEC--TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccC--CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            35676 999999999999998   45789874  4699999997 88885 699999996 788887654

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.97  E-value=0.0046  Score=68.15  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-cC------CceEEEEEEECCEE
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IP------PGYHQYKFCVDGEW   85 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~------~g~~~ykf~VDg~w   85 (500)
                      ++|. |...|++|.|++ |++|..     .++|.+.  .+|+|++.++ +.      +|.|.|+|.|+|.|
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA--GSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC--STTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccC--CCCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            6676 999999999999 988653     3578763  4699999987 66      89999999999854

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.84  E-value=0.0093  Score=63.81  Aligned_cols=60  Identities=8%  Similarity=-0.052  Sum_probs=47.4

Q ss_pred             CceeeEEEE-ecCCCceEEE-EEccCCCCC----CCCCCccc--CCCCeEEEEEEcCCceEEEEEEEC
Q 010821           23 TVLIPMRFV-WPYGGRSVFL-SGSFNRWSE----LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD   82 (500)
Q Consensus        23 ~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~----~~~m~~~~--~~~~~~~~~~~L~~g~~~ykf~VD   82 (500)
                      ...+.++|. |.+.+++|.| .|+|++|+.    ..+|.+..  +..++|++.++.....+.|||.|.
T Consensus        20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           20 ETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            456777885 8889999999 799999975    35888743  123579999998777899999984

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.76  E-value=0.01  Score=64.38  Aligned_cols=54  Identities=17%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE   84 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~   84 (500)
                      -++|. |...|++|.|++ |+++.  ..++|.+.  .+|+|++.++ +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH--SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE--ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC--CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            36776 999999999999 98765  34688763  4699999986 778876 99999884

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.58  E-value=0.01  Score=63.75  Aligned_cols=62  Identities=23%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeee
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFIS   95 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~   95 (500)
                      -++|+ |...|++|.|+|+   + ..++|.+.  ..|+|++.+++.+|.+ |+|.|||..+.||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~--~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSL--GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEE--ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeC--CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            46675 9999999999994   2 35789875  3689999999888886 9999999777888776543

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.55  E-value=0.026  Score=61.85  Aligned_cols=55  Identities=15%  Similarity=0.331  Sum_probs=43.6

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w   85 (500)
                      -++|. |...|++|.|++ |+.+..     .++|.+.  ..|+|++.++ +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK--TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE--SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC--CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            36776 999999999999 876442     3578763  4699999986 788987 999999854

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.39  E-value=0.038  Score=60.17  Aligned_cols=68  Identities=22%  Similarity=0.503  Sum_probs=49.5

Q ss_pred             CceeeEEEEecC-----CCceEEEEEccC---CCCC--------CC-CCCcccCCCCeEEEEEEcCCc-eEEEEEEE-C-
Q 010821           23 TVLIPMRFVWPY-----GGRSVFLSGSFN---RWSE--------LL-PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV-D-   82 (500)
Q Consensus        23 ~~~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~--------~~-~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V-D-   82 (500)
                      ...++++|.-..     -|++|+|+|+-.   +|++        .+ +|...  ....|++++.||+| .++|||++ | 
T Consensus       579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~--~~~~W~~~v~l~~~~~~eyKy~~~~~  656 (686)
T 1qho_A          579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAP--NYPDWFYVFSVPAGKTIQFKFFIKRA  656 (686)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCT--TTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccC--CCCcEEEEEEeCCCCeEEEEEEEEcC
Confidence            355777777443     478999999886   7998        34 77653  46789999999998 59999998 3 


Q ss_pred             -C--EEeeCCCCC
Q 010821           83 -G--EWRHDEHQP   92 (500)
Q Consensus        83 -g--~w~~d~~~~   92 (500)
                       |  .|...++.-
T Consensus       657 ~~~~~We~~~nr~  669 (686)
T 1qho_A          657 DGTIQWENGSNHV  669 (686)
T ss_dssp             TSCEEECCSSCEE
T ss_pred             CCCEEeCCCCCee
Confidence             3  365554443

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.22  E-value=0.012  Score=62.92  Aligned_cols=61  Identities=18%  Similarity=0.203  Sum_probs=47.9

Q ss_pred             CCceeeEEEE-ecCCCceEEE-EEccCCCCC------CCCCCcccC--CCCeEEEEEEcCCceEEEEEEEC
Q 010821           22 DTVLIPMRFV-WPYGGRSVFL-SGSFNRWSE------LLPMSPVEG--CPTVFQIIWSIPPGYHQYKFCVD   82 (500)
Q Consensus        22 ~~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~------~~~m~~~~~--~~~~~~~~~~L~~g~~~ykf~VD   82 (500)
                      ....+.++|+ |.+.+++|.| .|+|++|+.      ..+|.+...  ..++|++.++.....+.|+|.|+
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           19 DSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            3456888886 9889999999 799999965      468987532  24579999998777889999884

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.09  E-value=0.12  Score=55.16  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=44.1

Q ss_pred             ceeeEEEEecC---CCceEEEEEccC---CCCCC--CCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.-..   .|++|+|+|+-.   +|++.  ++|...+-  ++..|++++.||+| .++|||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            45677777443   379999999876   79974  47776420  13789999999998 59999998

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=94.70  E-value=0.033  Score=60.99  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEE--CCE--EeeCCCCCe
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF   93 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V--Dg~--w~~d~~~~~   93 (500)
                      -++|+ |...|++|.|++.|++|... ++|.+.  ..|+|++.++ +.+| ..|+|.|  +|.  +..||....
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~  184 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL--EKGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKA  184 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC--GGGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSS
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC--CCCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCcccc
Confidence            36676 99999999999999988653 689874  3689999987 4556 3566666  476  456876654

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=94.46  E-value=0.04  Score=62.74  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             EEEE-ecCCCceEEEEE-ccCCCCC-CCCCCcccCCCCeEEEEEE-cCCceEEEEEEEC------CE----EeeCCCCCe
Q 010821           28 MRFV-WPYGGRSVFLSG-SFNRWSE-LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQPF   93 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~G-sf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD------g~----w~~d~~~~~   93 (500)
                      ++|. |...|++|.|++ +|++|.. .++|.+. ...|+|++.++ +.+|.+ |+|.|+      |.    ...||....
T Consensus       306 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~~  383 (1083)
T 2fhf_A          306 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAHS  383 (1083)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCccceEECeEC-CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccce
Confidence            5666 999999999999 9999975 3688753 24689999986 778865 777775      43    477877764


Q ss_pred             ee
Q 010821           94 IS   95 (500)
Q Consensus        94 ~~   95 (500)
                      ..
T Consensus       384 ~~  385 (1083)
T 2fhf_A          384 LS  385 (1083)
T ss_dssp             BC
T ss_pred             ec
Confidence            43

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=94.36  E-value=0.093  Score=57.05  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=45.7

Q ss_pred             CceeeEEEEecC----CCceEEEEEccC---CCCCC--C-CCCcc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        23 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ...++++|.-..    .|+.|+|+||-.   +|++.  + +|... ......|++++.||+| .++|||++
T Consensus       577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            356888888644    489999999877   89974  4 66651 0246799999999988 79999998

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=93.89  E-value=0.096  Score=56.98  Aligned_cols=58  Identities=29%  Similarity=0.408  Sum_probs=45.6

Q ss_pred             ceeeEEEEecC----CCceEEEEEccC---CCCCC--C-CCCcc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.-..    .|+.|+|+||-.   +|++.  + +|... ......|++++.||+| .++|||++
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            56888898654    379999999887   89964  4 67651 0246799999999988 79999997

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=93.51  E-value=0.051  Score=60.88  Aligned_cols=53  Identities=13%  Similarity=0.014  Sum_probs=39.3

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCCC--CCCcccCCCCeEEEEEE-cCCceEEEEEEECC
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSELL--PMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG   83 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~--~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg   83 (500)
                      ++|. |...|++|.|++-+++|.+..  .|.+  +.+|+|++.++ +.+|. .|+|.|++
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~--~~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLK--ESNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECE--EETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeec--CCCCEEEEEECCCCCCC-EEEEEEeC
Confidence            6777 999999999999666666543  2333  35799999987 56675 48888875

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.49  E-value=0.039  Score=61.52  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEcCCce-----EEEEEEEC--CE--EeeCCCCCe
Q 010821           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIPPGY-----HQYKFCVD--GE--WRHDEHQPF   93 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~~g~-----~~ykf~VD--g~--w~~d~~~~~   93 (500)
                      ++|. |...|++|.|++ ++++|..   .++|.+  ..+|+|++.+.+.+|.     +.|+|.|+  |.  ...||-+..
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVK--NNKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEE--CTTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeecccc--CCCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6777 999999999998 7888863   468877  3579999999877762     67888885  33  577887754


Q ss_pred             e
Q 010821           94 I   94 (500)
Q Consensus        94 ~   94 (500)
                      +
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=93.40  E-value=0.024  Score=60.58  Aligned_cols=59  Identities=15%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CceeeEEEE-ecCCCceEEE-EEccCCCCC---CCCCCcccC--CCCeEEEEEEcCCceEEEEEEE
Q 010821           23 TVLIPMRFV-WPYGGRSVFL-SGSFNRWSE---LLPMSPVEG--CPTVFQIIWSIPPGYHQYKFCV   81 (500)
Q Consensus        23 ~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~---~~~m~~~~~--~~~~~~~~~~L~~g~~~ykf~V   81 (500)
                      ...+.++|+ |.+.+++|.| .|+|++|..   ..+|.+...  ..|+|++.++.....+.|||.|
T Consensus        20 ~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i   85 (583)
T 1ea9_C           20 GTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLL   85 (583)
T ss_dssp             SSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCC
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEE
Confidence            445677775 9889999999 799999975   358887432  2457999998777778888887

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=93.40  E-value=0.12  Score=54.07  Aligned_cols=58  Identities=12%  Similarity=0.175  Sum_probs=43.8

Q ss_pred             CceeeEEEEecC----CCceEEEEEccC---CCCCCC---CCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSELL---PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        23 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~~---~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ...++++|.-..    -|++|+|+||-.   +|++..   +|... ..++.|++++.||+| .++|||++
T Consensus       417 ~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-~~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          417 VTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-SHSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             CCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-TTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             cCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-CCCCEEEEEEEECCCCcEEEEEEE
Confidence            345788887433    489999999876   799763   45442 234599999999998 59999998

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=93.08  E-value=0.17  Score=55.12  Aligned_cols=58  Identities=28%  Similarity=0.425  Sum_probs=45.2

Q ss_pred             ceeeEEEEecC----CCceEEEEEccC---CCCCC--C-CCCcc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.-..    .|+.|+|+||-.   +|++.  + +|... ......|++++.||+| .++|||++
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            56888888544    489999999877   89974  4 56541 0245799999999988 79999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.78  E-value=0.11  Score=58.47  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             EEEE-ecCCCceEEEEEccCCCC----CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEE--CCE--EeeCCCCCe
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF   93 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V--Dg~--w~~d~~~~~   93 (500)
                      ++|+ |...|++|.|++ |++|.    ..++|.+.  ..|+|++.++ +.+|. .|+|.|  +|.  +..||-...
T Consensus       327 v~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          327 TSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS--DNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC--GGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC--CCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            5665 999999999997 99995    24688874  3689999987 55665 377766  564  466776653

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=92.76  E-value=0.13  Score=56.20  Aligned_cols=65  Identities=11%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEcC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 010821           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ   91 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~--~g-----~~~ykf~VD--g~--w~~d~~~   91 (500)
                      ++|. |...|++|.|++ +|++|..   .++|.+.  ..|+|++.++-.  +|     -+.|+|.|+  |.  ...||-+
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC--CCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            6676 999999999999 8998864   4688873  469999998731  34     267888885  54  4578766


Q ss_pred             Cee
Q 010821           92 PFI   94 (500)
Q Consensus        92 ~~~   94 (500)
                      ..+
T Consensus       104 ~~~  106 (714)
T 2ya0_A          104 KSL  106 (714)
T ss_dssp             SEE
T ss_pred             eee
Confidence            543

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=91.57  E-value=0.22  Score=53.34  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=47.5

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEEC-CEEeeCCCCCeeeC
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD-GEWRHDEHQPFISS   96 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD-g~w~~d~~~~~~~~   96 (500)
                      ++|. |...|++|.|++   +|.. .+|.+.  .+|+|++.++ +.+|. .|+|.|+ |....||.......
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~~-~~m~~~--~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~~  108 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGKD-QEMQAN--GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQKT  108 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTEE-EECEEC--STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBSS
T ss_pred             EEEEEECCCCCEEEEEE---CCCc-ccCeec--CCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeeec
Confidence            6777 999999999998   3543 689874  4689999885 77776 5899995 56888887765433

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=91.22  E-value=0.17  Score=54.51  Aligned_cols=56  Identities=11%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             eEEEE-e----cCCCceEEEEEccCCCCC-CCCCCc--cc--CCCCeEEEEEEcCCceEEEEEEECC
Q 010821           27 PMRFV-W----PYGGRSVFLSGSFNRWSE-LLPMSP--VE--GCPTVFQIIWSIPPGYHQYKFCVDG   83 (500)
Q Consensus        27 ~~~f~-~----~~~~~~V~l~Gsf~~W~~-~~~m~~--~~--~~~~~~~~~~~L~~g~~~ykf~VDg   83 (500)
                      .++|+ |    ...|++|.|++.|++ .. .++|.+  ..  +..|+|++.++.......|+|.|+|
T Consensus        31 ~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             EEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            45665 7    667999999999974 32 368876  32  2347999999876666789999965

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=89.97  E-value=0.25  Score=56.11  Aligned_cols=63  Identities=13%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEEcC--Cc-----eEEEEEEEC--CE--EeeCCCC
Q 010821           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GE--WRHDEHQ   91 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~--~g-----~~~ykf~VD--g~--w~~d~~~   91 (500)
                      ++|. |...|++|.|++ +|++|..   .++|.+  ...|+|++.++-.  +|     -+.|+|.|+  |.  ...||-+
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEK--GERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEE--CGGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEeccc--CCCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            6776 999999999999 8998864   468887  3468999998741  23     256788885  53  4677765


Q ss_pred             C
Q 010821           92 P   92 (500)
Q Consensus        92 ~   92 (500)
                      .
T Consensus       411 ~  411 (1014)
T 2ya1_A          411 K  411 (1014)
T ss_dssp             S
T ss_pred             e
Confidence            4

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=88.32  E-value=0.71  Score=51.85  Aligned_cols=60  Identities=27%  Similarity=0.512  Sum_probs=43.4

Q ss_pred             eeeEEEEecCCCceEEEEEcc-------CCCCCCC---CCCcccCCCCeEEEEEEcCCceEEEEEEECCEEe
Q 010821           25 LIPMRFVWPYGGRSVFLSGSF-------NRWSELL---PMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR   86 (500)
Q Consensus        25 ~~~~~f~~~~~~~~V~l~Gsf-------~~W~~~~---~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~   86 (500)
                      .+|+..--...+..+.+.|+|       .+|++..   -|.+.  .+|.|+.+-.||+|.|+||+.++|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~--~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKI--NPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEE--ETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccccchhhhccccccCCCCCCcceeecc--CCcceeeeeccCCcceeEEEeecCccc
Confidence            445544444556678888876       4688764   23332  368999999999999999999997773

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=87.59  E-value=0.47  Score=43.69  Aligned_cols=50  Identities=20%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             CceEEEEEccCCCCCC--CCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEe
Q 010821           36 GRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR   86 (500)
Q Consensus        36 ~~~V~l~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~   86 (500)
                      .+++||+|++++|...  .+|.+....++.|...+.|+.|. +|||.-+..|-
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~   63 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEY   63 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence            5789999999998743  47877666689999999998775 89999765553

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=86.79  E-value=1.2  Score=35.54  Aligned_cols=63  Identities=16%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             eEEEEecCCCceEEEEEccC--CCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEECC--EEeeCCCC
Q 010821           27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDG--EWRHDEHQ   91 (500)
Q Consensus        27 ~~~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VDg--~w~~d~~~   91 (500)
                      .+++.|..++.+|+|-=.+.  +|...  ++|.+. .+.|.|..++.|+.+ .++|+| -||  .|-.+...
T Consensus        11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A           11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-ccCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            44555557889999886675  48763  467653 267888999999864 788888 565  58665433

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=86.65  E-value=0.13  Score=54.12  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             ceeeEEEEe-cC---CCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVW-PY---GGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~-~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.- ..   .|++|+|+||-.   +|++.  ++|... .....|++++.||+| .++|||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-~~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-SGYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-CCCCeEEEEEEeCCCCcEEEEEEE
Confidence            457778774 22   389999999887   79874  577631 235789999999998 59999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	500
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	2e-25
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	3e-25
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-14
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-12
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-13
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	7e-08
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	4e-11
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.001
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-10
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-10
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	1e-09
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	9e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-04
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	3e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.001

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+     P+      F  I  +P G HQYKF VDG+W 
Sbjct: 3   PTVFRWTGGGKEVYLSGSFNNWSK----LPMTRSQNNFVAILDLPEGEHQYKFFVDGQWT 58

Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 59  HDPSEPIVTSQLGTVNNIIQVKKTDF 84

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 97.1 bits (241), Expect = 3e-25
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 23  TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 83  GEWRHDEHQPFISSEYGIVNTVLLATE 109
            E R  +  P  + + G     +   +
Sbjct: 61  NELRVSDFLPTATDQMGNFVNYIEVRQ 87

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFV 222
            + F+ +H  Y+L+P S K+V  D  L VK+AF  L        G+  APLWD  K  FV
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL-----VTNGVRAAPLWDSKKQSFV 60

Query: 223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
           G+L+ +DFI IL            E  E    +  +       + +           V  
Sbjct: 61  GMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL-----------VCI 109

Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 329
            PN +L D    ++ N++  +P+I     D      L+I +   ILK
Sbjct: 110 SPNASLFDAVSSLIRNKIHRLPVI-----DPESGNTLYILTHKRILK 151

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.4 bits (148), Expect = 7e-12
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV-DDNDSLLDIYCRSDITALAKDKAYAH 422
           P    L +   S  +  A   LV   V + P+      S + +   +D   +     Y  
Sbjct: 20  PTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYK 77

Query: 423 INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS 482
             L ++   +  ++        +   +      P+ +L   +  L    + RL +++  S
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 483 KRVEGIVSLSDIFKFL 498
                I++   I KFL
Sbjct: 138 GNTLYILTHKRILKFL 153

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 67.3 bits (163), Expect = 1e-13
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 13/176 (7%)

Query: 161 HRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKAR 220
             +  F+ + T+Y++LP S +++  D+ L VK +  +L         I  APLWD    +
Sbjct: 11  KEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTL-----NNIVSAPLWDSEANK 65

Query: 221 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLV 280
           F G+L+ +DF+ +++      S           I+   + +    R+++    A P   +
Sbjct: 66  FAGLLTMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETI 118

Query: 281 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 336
           Y  P  +L D    +  +    +P+I    + GS   ++ + +   ILK +    +
Sbjct: 119 YVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCK 173

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 7/142 (4%)

Query: 364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV-DDNDSLLDIYCRSD-ITALAKDKAYA 421
           P    L +   +  +  +L+LL    + S P+   + +    +   +D +  +      +
Sbjct: 27  PTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS 86

Query: 422 HINLSEMTIHQALQLG-QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE- 479
               +   I +   LG ++                P  +L      ++    RR+ +++ 
Sbjct: 87  SFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV 146

Query: 480 ---AGSKRVEGIVSLSDIFKFL 498
               GS+ +  +++   I KF+
Sbjct: 147 DGETGSEMIVSVLTQYRILKFI 168

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 347 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 406
           +P+  + +GTW           LA       +   + +L +  +S++PIV+   +LL++Y
Sbjct: 1   VPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY 51

Query: 407 CRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER 466
              D+  L +D  Y++++LS                           C  +D L  + + 
Sbjct: 52  ESVDVMHLIQDGDYSNLDLSVGEALL----------KRPANFDGVHTCRATDRLDGIFDA 101

Query: 467 LANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
           + +  V RL +V+    ++EGI+SL+DI  +++ 
Sbjct: 102 IKHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC 338
           L  A     + DV + +    +             + P +    +L  + + V       
Sbjct: 14  LATASMETKVYDVIKMLAEKNI------------SAVPIVNSEGTLLNVYESVDVMHLIQ 61

Query: 339 SSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD 398
                 L L +    +          N   +   R +  L    + +  ++V  + +VD+
Sbjct: 62  DGDYSNLDLSVGEALLKRP------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE 115

Query: 399 NDSLLDIYCRSDI 411
           N  L  I   +DI
Sbjct: 116 NLKLEGILSLADI 128

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417
           + ++       +AM+R +  +  AL + VQ +VS++P+VD+   ++DIY + D+  LA +
Sbjct: 11  LEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE 70

Query: 418 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 477
           K Y ++++S     Q                +    C   +TL  ++ RL    V RLV+
Sbjct: 71  KTYNNLDVSVTKALQH----------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV 120

Query: 478 VEAGSKRVEGIVSLSDIFKFLL 499
           V+     V+GIVSLSDI + L+
Sbjct: 121 VDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 262 AYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI 321
            ++++ ++         +        +       + + V+ +P++               
Sbjct: 5   EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD------------EK 52

Query: 322 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAA 381
             +  I             +   L + +          +        +       +L A 
Sbjct: 53  GRVVDIYSKFDVINLAAEKTYNNLDVSVT------KALQHRSHYFEGVLKCYLHETLEAI 106

Query: 382 LNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411
           +N LV+A+V  + +VD++D +  I   SDI
Sbjct: 107 INRLVEAEVHRLVVVDEHDVVKGIVSLSDI 136

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417
           +  +    +  +   + +  +   + +L Q +VSS+PI+D+N  L+++Y   D+  L K 
Sbjct: 8   IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 67

Query: 418 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 477
             Y  ++LS                      +    C  +D L  +M+ +    V R  +
Sbjct: 68  GIYNDLSLSVGEALM----------RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 117

Query: 478 VEAGSKRVEGIVSLSDIFKFLL 499
           V+    R+ G+++LSDI K++L
Sbjct: 118 VDDV-GRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 263 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 322
           +L   I          +        + DV + +    V++VPII    ++G    +    
Sbjct: 3   FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENGYLINVYEAY 59

Query: 323 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAAL 382
            + G++K         S    +++       V T                  +  LS  +
Sbjct: 60  DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT---------------CTKNDKLSTIM 104

Query: 383 NLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411
           + + +A+V    +VDD   L+ +   SDI
Sbjct: 105 DNIRKARVHRFFVVDDVGRLVGVLTLSDI 133

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 26/153 (16%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS---------- 409
           +I    +R ++++     L AAL  L+ +   ++P+VD   +L+ I   +          
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 410 ---DITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER 466
                   A  +    +      + +  +L   +    E+ ++   +  P  T+H+V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 467 LANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
           +A   + +L ++  G   + G++   D+ K L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 419
           K+ +   R    L  + +L+ A +L+    +  +PIVD N  LL I  + D+ A  +   
Sbjct: 3   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL 62

Query: 420 YAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 479
                   +               +E+         P   L +    +    +  L +V 
Sbjct: 63  QRSAQGDSLAFE---------TPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA 113

Query: 480 AGSKRVEGIVSLSDIFKFLL 499
                + GI++ SD     +
Sbjct: 114 KD--VLVGIITDSDFVTIAI 131

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 19/142 (13%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417
           V  + +     +  + P  S+  A+  +    + ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 418 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 477
                    +  + +                 +      ++T    M  +    VR L +
Sbjct: 64  DKPVKDTQVKEIMTR-----------------QVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 478 VEAGSKRVEGIVSLSDIFKFLL 499
           ++ G  +V G++S+ D+ K  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 26/136 (19%)

Query: 276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 335
              +V  GP+D++ +  +K+  + +  + ++      G                   R F
Sbjct: 12  GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVG---------------ILTERDF 56

Query: 336 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 395
                           +       ++ E   R +A +  + +    + L+ + +V  +P+
Sbjct: 57  SRK----------SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 396 VDDNDSLLDIYCRSDI 411
           +DD   ++ +    D+
Sbjct: 107 LDDGK-VIGLLSIGDL 121

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 19/134 (14%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
            + L  ++PS S+  A  L+++  V S+ +++D+ +++  + +SDI          +   
Sbjct: 12  TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP 71

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
            E  + +                        +  L +V+ ++A   ++ ++I E G  ++
Sbjct: 72  VERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KI 112

Query: 486 EGIVSLSDIFKFLL 499
            GI +LSD+ +   
Sbjct: 113 VGIFTLSDLLEASR 126

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
              +  +    +L+AA   + +  + ++PI  D+D L  +    DI              
Sbjct: 8   NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTA 67

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
           +   + +                        + ++ +++  +    VRR+ ++     R+
Sbjct: 68  TAGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RL 109

Query: 486 EGIVSLSDIFKFL 498
            GIV+ +DI + L
Sbjct: 110 VGIVTEADIARHL 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 419
           ++ +     +  +  +ASL   L   V+    S   V      + I    D         
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIVTTWD--------- 50

Query: 420 YAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 479
                   +    A          +E+  +      P  T+ +  E++    V RL++ E
Sbjct: 51  --------VLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 480 AGSKRVEGIVSLSDIFK 496
                + G++S +DI +
Sbjct: 103 DD--EIIGVISATDILR 117

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 17/137 (12%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 371 MLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEM 428
           + + S ++     ++ +   S  P+V   ++  L+    R D+    ++       +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 429 TIHQALQLGQDSYSPYELRSQRCQMCL-------PSDTLHKVMERLANPGVRRLVIVEAG 481
           +I    +             +   +             +  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 482 SKRVEGIVSLSDIFKFL 498
             R+ GI++  D+ K +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAH 422
            R +  +  +++    L++L Q ++   P VD    N  L  I        L +  +   
Sbjct: 18  VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYR 77

Query: 423 INLSEMTIHQALQLGQDSYSPYELRSQRCQM-------CLPSDTLHKVMERLANPGVRRL 475
               E  +        +      + +             +   +L K     +  G+ R 
Sbjct: 78  RQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRA 137

Query: 476 VIVEAGSKRVEGIVSLSDIFKFLLG 500
            +   G  ++ G+V+L++I   + G
Sbjct: 138 YVTSMG--KLVGVVALAEIQAAIEG 160

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
                 +  + ++  A+ ++ +  +  + + DDN + + +     I              
Sbjct: 10  NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------------- 55

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
             +          D      +  +          +  V   L+  G+ R  +V+    RV
Sbjct: 56  --IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRV 112

Query: 486 EGIVSLSDIFKFLLG 500
            GIV+L+D+ ++L  
Sbjct: 113 VGIVTLTDLSRYLSR 127

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 280 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS 339
           V   P D ++DV      +    +PI  +        +L+ I S   I            
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEEHDRFL 63

Query: 340 SSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 399
             +   +  +   P                       +L  A  +L +++   +PIV++N
Sbjct: 64  EEIMTKREDLVVAP--------------------AGITLKEANEILQRSKKGKLPIVNEN 103

Query: 400 DSLLDIYCRSDI 411
           D L+ I  R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 372 LRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEM 428
           L P   +        +     IPI D       L+ I    DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 429 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGI 488
                               +   +     TL +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 489 VSLSDIFK 496
           ++ +D+ K
Sbjct: 110 IARTDLKK 117

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 26/142 (18%)

Query: 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC-RSDITALAKDK 418
           K+ +   +   M+  SA++   L+ + Q Q +   + D       +      +       
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSS 61

Query: 419 AYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV 478
            +  ++L +  +H                          D +   +          L +V
Sbjct: 62  VFNKVSLPDFFVH------------------------EEDNITHALLLFLEHQEPYLPVV 97

Query: 479 EAGSKRVEGIVSLSDIFKFLLG 500
           +    R++G VSL D  + L+ 
Sbjct: 98  DEE-MRLKGAVSLHDFLEALIE 118

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 425
           +  +  +   A L+    ++ +  + S+ +VD N  +  I  R  + A+ K K+      
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA- 69

Query: 426 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 485
                              E  +           +   +  +    +R L +V+     +
Sbjct: 70  ------------------EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNL 110

Query: 486 EGIVSLSDIFKFL 498
           +GI+S+ DI + +
Sbjct: 111 KGIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 11/142 (7%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417
           V  + +       ++     +   ++ +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 418 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 477
             +  I   E+       + +                     L + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 478 VEAGSKRVEGIVSLSDIFKFLL 499
           V+     + G ++  +I   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 10/132 (7%)

Query: 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 426
           +   +L     L +A   + +  +  I + ++   +  +    D+ +  +       +  
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVESYCKDSCSQG 66

Query: 427 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 486
           ++       +        +  +        +      +  +       L +V+    +  
Sbjct: 67  DLYHISTTPII-------DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPV 118

Query: 487 GIVSLSDIFKFL 498
           GIV+  +     
Sbjct: 119 GIVTEREFLLLY 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	500
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.9
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.87
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.81
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.8
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.79
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.79
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.77
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.77
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.76
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.76
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.74
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.73
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.71
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.7
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.69
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.69
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.68
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.67
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.66
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.65
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.65
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.65
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.64
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.64
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.64
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.63
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.63
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.63
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.62
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.61
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.61
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.61
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.6
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.6
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.59
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.58
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.57
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.57
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.57
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.57
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.49
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.58
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.52
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.72
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.69
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.69
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.65
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.65
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.42
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	96.2
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.44
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	89.88
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	88.14

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=195.52  Aligned_cols=86  Identities=24%  Similarity=0.627  Sum_probs=80.4

Q ss_pred             ceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 010821           24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT  103 (500)
Q Consensus        24 ~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn  103 (500)
                      -+||++|+|+++|++|+|+||||+|++..+|.+..+.+|.|+++++|+||.|+|||+|||+|++||.+|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            36999999999999999999999999987777665668999999999999999999999999999999999999999999


Q ss_pred             EEEecc
Q 010821          104 VLLATE  109 (500)
Q Consensus       104 ~l~v~~  109 (500)
                      +|.|++
T Consensus        82 vi~V~~   87 (87)
T d2qlvb1          82 YIEVRQ   87 (87)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999975

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=1.7e-27  Score=188.56  Aligned_cols=83  Identities=46%  Similarity=0.951  Sum_probs=77.3

Q ss_pred             eeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeEE
Q 010821           26 IPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVL  105 (500)
Q Consensus        26 ~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn~l  105 (500)
                      .|++|+|+++|++|+|+||||+|++ .+|.+   .+|.|++++.||||.|+|||+|||+|++||.+|++.|++|+.||+|
T Consensus         2 ~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~---~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi   77 (87)
T d1z0na1           2 RPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR---SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNII   77 (87)
T ss_dssp             EEEEEEECSCCSCEEEEEGGGTTCC-EECEE---ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEEEEeCCCCc-ccccc---CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEEE
Confidence            6999999999999999999999987 45654   4689999999999999999999999999999999999999999999


Q ss_pred             EeccCCC
Q 010821          106 LATEPNF  112 (500)
Q Consensus       106 ~v~~~~~  112 (500)
                      .|++.|.
T Consensus        78 ~V~~~D~   84 (87)
T d1z0na1          78 QVKKTDF   84 (87)
T ss_dssp             EECSCTT
T ss_pred             EECCCcc
Confidence            9998875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.90  E-value=2.5e-23  Score=188.33  Aligned_cols=167  Identities=22%  Similarity=0.433  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHH
Q 010821          157 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRE  236 (500)
Q Consensus       157 ~~~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~  236 (500)
                      .-+.+.+++||+.++|||+||.|+++++++.+.||.+||+.|.++     ++.++||||+++++++|++|..|++.++..
T Consensus         7 ~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~-----~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           7 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN-----NIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHH-----TCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHc-----CCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            347889999999999999999999999999999999999999999     999999999888899999999999998876


Q ss_pred             hcCCCC-CCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCC
Q 010821          237 LGNHGS-NLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF  315 (500)
Q Consensus       237 ~~~~~~-~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~  315 (500)
                      ...... .....++.......+.......        ..+.++++++.++++|.+|+.+|.+++++++||++.+.+.+ .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~  152 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKI--------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-S  152 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHT--------TCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-C
T ss_pred             ccccccchhhhhhhhccchhhhcccceee--------eecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-C
Confidence            543221 1112333333444443333221        24678999999999999999999999999999997432222 3


Q ss_pred             ceEEEEEehhhHHHHHHhhccc
Q 010821          316 PQLLHIASLSGILKCVCRYFRH  337 (500)
Q Consensus       316 ~~liGivs~~dIl~~l~~~~~~  337 (500)
                      .+++||+|++||++|++.+++.
T Consensus       153 ~~vvgiiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         153 EMIVSVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEEEEEEHHHHHHHHHTTCGG
T ss_pred             CcEEEEEeHHHHHHHHHHhhhH
Confidence            4899999999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.1e-21  Score=173.89  Aligned_cols=153  Identities=35%  Similarity=0.616  Sum_probs=124.5

Q ss_pred             HHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC
Q 010821          162 RVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG  241 (500)
Q Consensus       162 ~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~  241 (500)
                      .+..||+.+|+||+||.+.++|+++.++|+.+|++.|.++     ++.++||+|.+.++++|+++..|++.++.......
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~-----~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~   79 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-----GVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA   79 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-----TCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHc-----CCCceeEEECCCCcEEEEEEHHHHHHHHHhccccc
Confidence            5789999999999999999999999999999999999999     99999999988899999999999999887654211


Q ss_pred             CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEE
Q 010821          242 SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI  321 (500)
Q Consensus       242 ~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGi  321 (500)
                      . .....+.......+.....          ..+.++++++++++++.+|+++|.+++++++||+  |.++|   +++||
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vv--d~~~g---~~~Gi  143 (159)
T d2v8qe2          80 L-VQIYELEEHKIETWREVYL----------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI--DPESG---NTLYI  143 (159)
T ss_dssp             T-TTCCCGGGCBHHHHHHHHS----------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEE--CTTTC---CEEEE
T ss_pred             c-chhhhhhhhhcccccceee----------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEE--ECCCC---eEEEE
Confidence            0 1111222233333332221          1467889999999999999999999999999999  44566   79999


Q ss_pred             EehhhHHHHHHhhc
Q 010821          322 ASLSGILKCVCRYF  335 (500)
Q Consensus       322 vs~~dIl~~l~~~~  335 (500)
                      ||++||++|+..+.
T Consensus       144 vT~~dilk~l~~~~  157 (159)
T d2v8qe2         144 LTHKRILKFLKLFI  157 (159)
T ss_dssp             ECHHHHHHHHHHHS
T ss_pred             EeHHHHHHHHHHHc
Confidence            99999999998654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.81  E-value=2e-19  Score=158.14  Aligned_cols=133  Identities=26%  Similarity=0.562  Sum_probs=115.3

Q ss_pred             ccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCccc
Q 010821          348 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSE  427 (500)
Q Consensus       348 ~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~  427 (500)
                      |++++.+|+|.         +++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|++..........   .+
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~---~~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN---LD   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGG---GG
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccc---cc
Confidence            56778888875         6899999999999999999999999999999999999999999998776543322   24


Q ss_pred             ccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          428 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       428 ~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      .++.+++....       .+..++++|.+++++.+|++.|.+++++++||||+ +|+++|+||++||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHHc
Confidence            78888885433       44678899999999999999999999999999995 7999999999999999863

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=4e-19  Score=153.69  Aligned_cols=136  Identities=27%  Similarity=0.498  Sum_probs=108.4

Q ss_pred             ccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc
Q 010821          344 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI  423 (500)
Q Consensus       344 ~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~  423 (500)
                      ++..+++++.++++         .+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++......... 
T Consensus         3 ~~~~~i~~l~~~~~---------~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~-   72 (140)
T d2nyca1           3 FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND-   72 (140)
T ss_dssp             GGGSBGGGSSCCBC---------SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-----
T ss_pred             cccCcHHHhCCccC---------CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccc-
Confidence            45677888866555         47999999999999999999999999999999999999999999998776543322 


Q ss_pred             CcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          424 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       424 ~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                        ....+.+.+....       .+..++++|++++++.+|++.|.+++++++||||+ +|+++|+||.+||+++++
T Consensus        73 --~~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          73 --LSLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CCSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             --cccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence              2345555553322       34567899999999999999999999999999995 899999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.80  E-value=2.3e-19  Score=155.06  Aligned_cols=125  Identities=20%  Similarity=0.261  Sum_probs=106.8

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc----CcccccHHHHHh
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI----NLSEMTIHQALQ  435 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~----~~~~~~v~~~l~  435 (500)
                      +++|+|+++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++..........    .....++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            5678899999999999999999999999999999999999999999999999986654321110    112345665   


Q ss_pred             cCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          436 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       436 ~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                +|.+++.+|++++++.+|+++|.+++++++||+|  +|+++|+||.+||++++.
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                      4578999999999999999999999999999999  489999999999999874

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=8.9e-20  Score=154.29  Aligned_cols=121  Identities=17%  Similarity=0.291  Sum_probs=104.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++|+|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++........   ......+++++     
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~---~~~~~~v~~im-----   73 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL---DPNTATAGELA-----   73 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC---CTTTSBHHHHH-----
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC---CcccceEEEEe-----
Confidence            3566798999999999999999999999999999999999999999999999764322211   12345677655     


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              .+++++|++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++|
T Consensus        74 --------~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          74 --------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             --------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             --------eccceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence                    67899999999999999999999999999999  48999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.7e-19  Score=154.82  Aligned_cols=137  Identities=33%  Similarity=0.590  Sum_probs=116.2

Q ss_pred             cccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc
Q 010821          343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH  422 (500)
Q Consensus       343 ~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~  422 (500)
                      .++.++++++.++++.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++..........
T Consensus         5 ~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~   75 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN   75 (145)
T ss_dssp             GGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             HHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc
Confidence            4567788888877664         6889999999999999999999999999999999999999999987665543322


Q ss_pred             cCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          423 INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       423 ~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                         ...++.+++....       .|..++++|.+++++.+++++|.+++++++||||+ +|+++|+||++||+++|+
T Consensus        76 ---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          76 ---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ---hhhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence               2466766654322       45678999999999999999999999999999995 799999999999999986

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.7e-19  Score=158.97  Aligned_cols=139  Identities=19%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC-ccccc----HHH--
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-LSEMT----IHQ--  432 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-~~~~~----v~~--  432 (500)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..|++............ .....    +..  
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            56778999999999999999999999999999999999999999999999997643222111100 00000    000  


Q ss_pred             ------HHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          433 ------ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       433 ------~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            ............++|++++++|.+++++.++++.|.+++++++||||+ +|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHHHHHHhC
Confidence                  000000111223578999999999999999999999999999999995 799999999999999885

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=7.2e-19  Score=152.49  Aligned_cols=122  Identities=16%  Similarity=0.274  Sum_probs=106.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.+++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......   .....++++       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~---~~~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc---ccccccccc-------
Confidence            5678899999999999999999999999999999999999999999999999864432211   122355665       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                            +|.+++++|++++++.+|+++|.+++++++||||+ +|+++|+||..||++++
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTS
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHH
Confidence                  56789999999999999999999999999999995 79999999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=1.2e-18  Score=146.60  Aligned_cols=120  Identities=18%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +|+++|+++++++.+++|+.+|++.|.+++++.+||++ +|+++|+||.+||++....+..    +.+.++.+++     
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~~m-----   70 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWEVM-----   70 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHHHC-----
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEeeec-----
Confidence            35677999999999999999999999999999999997 5899999999999986654432    3456788754     


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                              .+++.++++++++.+|++.|.+++++++||++  +|+++|+||.+||+++.+
T Consensus        71 --------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          71 --------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             --------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHC
T ss_pred             --------ccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcCC
Confidence                    77899999999999999999999999999987  589999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=2.1e-18  Score=147.58  Aligned_cols=121  Identities=19%  Similarity=0.346  Sum_probs=105.2

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +|+++|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++....+..    ....++++       
T Consensus         6 pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~----~~~~~v~~-------   74 (132)
T d2yzia1           6 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL----PYDIPVER-------   74 (132)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC----CTTSBGGG-------
T ss_pred             cHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC----ccceeEee-------
Confidence            3556699999999999999999999999999999999999999999999999875433221    12356665       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|.+++.++++++++.+|++.|.+++++++||++  +|+++|+||.+||++++.
T Consensus        75 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          75 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ------cccccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                  5578899999999999999999999999999887  599999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.76  E-value=2e-18  Score=146.68  Aligned_cols=120  Identities=15%  Similarity=0.234  Sum_probs=105.7

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      .|+++|.++++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++....+..     ...++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhcc-----ccchhhh-------
Confidence            46777999999999999999999999999999999998 5899999999999987665422     1355665       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|.+++.+|++++++.+|++.|.+++++++||||+ +|+++|+||.+||+++|.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence                  45778999999999999999999999999999995 799999999999999874

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=2.2e-19  Score=151.55  Aligned_cols=117  Identities=21%  Similarity=0.318  Sum_probs=87.2

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.++++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|++....          ..++.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----------~~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----------EEQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----------ccchhh-------
Confidence            345668889999999999999999999999999999999999999999999876321          123333       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                            +|.+++++|++++++.+|+++|.+++++++||||+ +|+++|+||.+||++++++
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHHh
Confidence                  56789999999999999999999999999999995 7999999999999998763

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=1.9e-18  Score=146.77  Aligned_cols=115  Identities=14%  Similarity=0.289  Sum_probs=98.6

Q ss_pred             CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821          367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  446 (500)
Q Consensus       367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  446 (500)
                      ++++++++++++.+|+++|.+++++++||++ +|+++|++|.+|+++.......   .....++.+             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~---~~~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc---cccceeEee-------------e
Confidence            4688999999999999999999999999998 6899999999999875432211   122345555             5


Q ss_pred             cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                      |.+++++|.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++++
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHHhC
Confidence            688999999999999999999999999999999  5899999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.75  E-value=8.9e-18  Score=148.05  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=108.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHcccccccC-c--ccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHIN-L--SEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~-~--~~~~v~~~l  434 (500)
                      +|+++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++......... .  ...+.....
T Consensus        12 ~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   91 (160)
T d2d4za3          12 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIY   91 (160)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHH
T ss_pred             EHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchhh
Confidence            778889999999999999999999999999999999985  47899999999998865432211110 0  001111111


Q ss_pred             -----hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821          435 -----QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  500 (500)
Q Consensus       435 -----~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~  500 (500)
                           ...........+|.++++++.+++++.+|+++|.+++++++||+|  +|+++|+||++||+++|.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          92 RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence                 011111122347889999999999999999999999999999998  5999999999999999986

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=7.4e-18  Score=146.35  Aligned_cols=124  Identities=8%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC-----------ccccc
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-----------LSEMT  429 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-----------~~~~~  429 (500)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++++..........           +...+
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKN   85 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCB
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccC
Confidence            4566889999999999999999999999999999999999999999999999866543222111           11112


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      +.+             +| .+++++.+++++.+|+++|.+++++++||||+ +|+++|+||.+||+++|.
T Consensus        86 ~~~-------------~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          86 ASE-------------IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             HHH-------------HC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HHH-------------Hc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            222             23 46778999999999999999999999999995 799999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=6.3e-18  Score=143.33  Aligned_cols=113  Identities=22%  Similarity=0.343  Sum_probs=96.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCC
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS  442 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~  442 (500)
                      |..+++++++++++.+|+++|.+++++++||+|+  +|+++|+||.+|+.......         .++..          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4456789999999999999999999999999996  78999999999997642221         22221          


Q ss_pred             cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                        .+|..+++++.+++++.+|+++|.+++++++||||+ +|+++|+||++||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence              145678899999999999999999999999999995 799999999999999863

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=2.3e-18  Score=146.30  Aligned_cols=115  Identities=14%  Similarity=0.236  Sum_probs=101.8

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      ++|.+|.++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.++++..          ..+.++.++ 
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~----------~~~~~v~~i-   70 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN----------DDDTLIADI-   70 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS----------CTTSBHHHH-
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc----------cccEEhhhh-
Confidence            34667999999999999999999999876     47899999999999999999998642          124678875 


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                                  |.++++++++++++.+|++.|.+++++++||||+ +|+++|+||..||++++
T Consensus        71 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          71 ------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             ------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred             ------------ccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHH
Confidence                        4788999999999999999999999999999995 79999999999999876

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=3.9e-18  Score=145.83  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=102.2

Q ss_pred             cCCCC--CCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc-cCcccccHHHHHhcC
Q 010821          361 IGEPN--RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-INLSEMTIHQALQLG  437 (500)
Q Consensus       361 v~d~m--~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-~~~~~~~v~~~l~~~  437 (500)
                      ++++|  ..+++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|+++......... ......++.+++   
T Consensus         4 v~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m---   80 (132)
T d1yava3           4 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM---   80 (132)
T ss_dssp             HHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS---
T ss_pred             HHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccc---
Confidence            34446  457899999999999999999999999999999999999999999998765432211 123346777754   


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                .+++.++.+++++.++++.|.+++  .+||||+ +|+++|+||++||++++.
T Consensus        81 ----------~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          81 ----------LTDIPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             ----------BCSCCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----------cccccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence                      678999999999999999998764  5999995 799999999999999873

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=4.3e-18  Score=143.31  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=103.1

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +++++|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+++.+|++++.          .+.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~----------~~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD----------LDSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC----------TTSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh----------ccccccc-------
Confidence            35677999999999999999999999999999999999999999999999997531          1245554       


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                            +|..+++++++++++.+++++|.+++..++||||+ +|+++|+||..||++++.
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHH
Confidence                  45778899999999999999999999999999995 799999999999999874

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=5.4e-18  Score=146.50  Aligned_cols=125  Identities=10%  Similarity=0.181  Sum_probs=106.2

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc--ccCcccccHHHHHhcCC
Q 010821          361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA--HINLSEMTIHQALQLGQ  438 (500)
Q Consensus       361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--~~~~~~~~v~~~l~~~~  438 (500)
                      |+++|+++++++++++++.+|+++|.+++++++||+|++++++|+++..|+++........  .......++.+      
T Consensus         4 V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~------   77 (141)
T d3ddja1           4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD------   77 (141)
T ss_dssp             HHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH------
T ss_pred             eHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH------
Confidence            4556999999999999999999999999999999999999999999999998765432110  01122456666      


Q ss_pred             CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                             +|.++++++.+++++.+|++.|.+++.+++||||+ +|+++|+||++||++++.
T Consensus        78 -------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          78 -------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALH  130 (141)
T ss_dssp             -------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             -------HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence                   45778999999999999999999999999999995 799999999999999874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.5e-18  Score=149.34  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=101.4

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  434 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  434 (500)
                      ++|++|+++++++++++|+.+|++.|.+++     ++.+||+|++|+++|+++.+|+....          ...++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~----------~~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC----------TTCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc----------cccchHH--
Confidence            467789999999999999999999997764     78899999999999999999986521          1234444  


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                                 +|.++++++++++++.+|++.|.+++++++||||+ +|+++|+||..||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHH
Confidence                       56889999999999999999999999999999995 799999999999999863

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.70  E-value=1.6e-17  Score=141.75  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=101.5

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  437 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  437 (500)
                      +|+++|.++++++++++++.+|+++|.+++++++||+  |++++++|+++..|+++....+....     ..+.      
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~-----~~~~------   70 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD-----GPAM------   70 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT-----SBSG------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc-----cccc------
Confidence            4678899999999999999999999999999999999  55689999999999998765542211     1111      


Q ss_pred             CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                              .+..++.++.+++++.+|+++|.+++++++||||+ +|+++|+||++||++++
T Consensus        71 --------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          71 --------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER  122 (131)
T ss_dssp             --------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred             --------cccccceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence                    23567889999999999999999999999999995 79999999999999764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.69  E-value=5.6e-17  Score=137.56  Aligned_cols=118  Identities=15%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             CCCcccCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccc
Q 010821          270 SHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI  344 (500)
Q Consensus       270 ~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~  344 (500)
                      .+|.+|.++++++++++|+.+|++.|.++     +++.+||++   +++   +++|+++..+++.             ..
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~~l~~-------------~~   62 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD---QEN---HLVGVISLRDLIV-------------ND   62 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC---TTC---BEEEEEEHHHHTT-------------SC
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEe---cCC---eEEEEEEeecccc-------------cc
Confidence            35678999999999999999999999887     478999993   455   7999999998862             11


Q ss_pred             cccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          345 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       345 l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      ...+++            ++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..||+.++.+.
T Consensus        63 ~~~~v~------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          63 DDTLIA------------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             TTSBHH------------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccEEhh------------hhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            233444            44999999999999999999999999999999999999999999999999977653

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.69  E-value=1.2e-18  Score=146.65  Aligned_cols=115  Identities=18%  Similarity=0.247  Sum_probs=61.3

Q ss_pred             CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821          365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  441 (500)
Q Consensus       365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  441 (500)
                      |.++++++.+++++.+|+++|.+++++++||+|+   +++++|+||.+|+........       ..++.+++       
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~-------~~~~~~~~-------   67 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-------DRFLEEIM-------   67 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------------------------CC-------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc-------CceeEEEE-------
Confidence            3346779999999999999999999999999985   679999999999864432221       13333322       


Q ss_pred             CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821          442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  498 (500)
Q Consensus       442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l  498 (500)
                          .+..+++++.+++++.+|+++|.+++++++||||+ +|+++|+||++||++..
T Consensus        68 ----~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          68 ----TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ----SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHHH
T ss_pred             ----eeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhcc
Confidence                34567899999999999999999999999999995 79999999999999864

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.68  E-value=1.5e-16  Score=134.88  Aligned_cols=118  Identities=21%  Similarity=0.334  Sum_probs=102.0

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++    ++   +++|++|..|+++++.....        ...++   
T Consensus         8 d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v---   69 (127)
T d2ef7a1           8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKA---   69 (127)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBG---
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec----cc---chhhhcchhHHHHHHHhhcc--------ccchh---
Confidence            35888999999999999999999999999999993    35   79999999999988764321        12333   


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                               +++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||..||++.+.+
T Consensus        70 ---------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          70 ---------EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ---------GGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ---------hhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                     34488889999999999999999999999999999999999999999999987643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.9e-17  Score=142.78  Aligned_cols=132  Identities=18%  Similarity=0.218  Sum_probs=101.4

Q ss_pred             CCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHccccccc-C---cccccHHHHH
Q 010821          362 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHI-N---LSEMTIHQAL  434 (500)
Q Consensus       362 ~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~-~---~~~~~v~~~l  434 (500)
                      .|+|.  .+++++..++++.+|+++|.+++++++||+|+ +++++|+++.+|++........... .   ..........
T Consensus        16 ~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (159)
T d2v8qe2          16 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWR   95 (159)
T ss_dssp             GGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHH
T ss_pred             EeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhccccc
Confidence            44463  46789999999999999999999999999975 6899999999999886543211110 0   0011111111


Q ss_pred             hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ..      ..++|..++++|+++++|.+|+++|.++++|++||+|+++|+++|+||++||+++|.
T Consensus        96 ~~------~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          96 EV------YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HH------HSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             ce------eeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            00      013677899999999999999999999999999999865789999999999999873

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=2.5e-17  Score=141.14  Aligned_cols=130  Identities=8%  Similarity=0.111  Sum_probs=102.0

Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821          360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  439 (500)
Q Consensus       360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  439 (500)
                      +|+++|.++++++.+++++.+|+++|.+++++++||+|+  +++|+++..|++...........   .......+..   
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---   73 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSC---SQGDLYHIST---   73 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---C---CHHHHHHHHT---
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccch---hhhhcccccc---
Confidence            456779889999999999999999999999999999974  79999999999875533221110   0000000100   


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                       ....++|..++.+|++++++.+|+++|.+++++++||+|+ +|+++|+||++||++++.
T Consensus        74 -~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          74 -TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             -SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGG
T ss_pred             -CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence             0112367889999999999999999999999999999995 799999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=9.3e-17  Score=139.27  Aligned_cols=119  Identities=15%  Similarity=0.282  Sum_probs=102.2

Q ss_pred             CCCCcccCCCceecCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcc
Q 010821          269 DSHGKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP  343 (500)
Q Consensus       269 ~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~-----i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~  343 (500)
                      |.+|.+|.++++++.+++|+.+|+++|.+++     ++.+||++   +++   +++|+++.+||+..             
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~dl~~~-------------   61 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDLIVA-------------   61 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC---TTC---BBCCBCBHHHHTTS-------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEec---CCC---CEecccchhhhhhc-------------
Confidence            4578899999999999999999999998774     78999993   456   89999999998631             


Q ss_pred             ccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          344 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       344 ~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                      ....            ++.++|.++++++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++...
T Consensus        62 ~~~~------------~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          62 DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             CTTC------------BSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             cccc------------chHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            1122            34556999999999999999999999999999999999999999999999999876553

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=5.6e-16  Score=131.09  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=94.6

Q ss_pred             cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821          275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  354 (500)
Q Consensus       275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  354 (500)
                      |..+++++.+++|+.+|+++|.+++++++||+|. ..++   +++|++|.+||++....            ..+.     
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~-----   61 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPI-----   61 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBT-----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCce-----
Confidence            3446789999999999999999999999999941 2345   79999999999753210            1111     


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                            ....+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++....
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                  122356678899999999999999999999999999999999999999999987653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=4.9e-16  Score=134.58  Aligned_cols=134  Identities=13%  Similarity=0.198  Sum_probs=102.1

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|...++++.+++++.+|++.|.+++++++||++   +++   +++|++|..||++++....................+.
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA---RDN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE---ETT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec---cCc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            5788899999999999999999999999999994   346   8999999999999887654332111111111111111


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                          ...++++| .+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+.++
T Consensus        83 ----~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          83 ----AKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             ----SCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ----ccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence                11223334 3567899999999999999999999999999999999999999999977654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.65  E-value=4.7e-16  Score=133.91  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=102.1

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCc-cccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL-PILKLPICAI  352 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~-~~l~~~v~~l  352 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+|+++++........... .....     
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd---~~~---~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~-----   75 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFET-----   75 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCC-----
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec---ccc---cccccccHHHHHHHHHhhhhhhhccccccccc-----
Confidence            5778899999999999999999999999999993   446   79999999999998876543311000 01122     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                             +++++|.++++++++++++.+|+++|.+++++++||+| +|+++|+||.+||++...+
T Consensus        76 -------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          76 -------PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             -------BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred             -------chhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                   34455889999999999999999999999999999998 5899999999999987654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=1.9e-16  Score=139.05  Aligned_cols=136  Identities=13%  Similarity=0.203  Sum_probs=101.8

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcc------cc-
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP------IL-  345 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~------~l-  345 (500)
                      .+|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++.+............      .. 
T Consensus         8 ~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd---~~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           8 PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD---SEG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC---TTS---CEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             HHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe---CCC---CceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            46899999999999999999999999999999993   456   799999999998655332111000000      00 


Q ss_pred             ----ccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          346 ----KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       346 ----~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                          ..............+++++|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                000111111112236778899999999999999999999999999999999999999999999999874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.1e-15  Score=131.67  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  351 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~  351 (500)
                      +..+.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|..|+++++........      ...+..
T Consensus        12 ~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~   79 (140)
T d2nyca1          12 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGE   79 (140)
T ss_dssp             SCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----C------CSBHHH
T ss_pred             CCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe---cCC---eEcceehhhHHHHHHhhcccccc------ccchhh
Confidence            335778999999999999999999999999999993   456   79999999999999876543211      111111


Q ss_pred             ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      . +     .....+..+++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        80 ~-~-----~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          80 A-L-----MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             H-H-----HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             h-h-----hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            0 0     11222456788999999999999999999999999999999999999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.64  E-value=1.2e-15  Score=129.26  Aligned_cols=114  Identities=16%  Similarity=0.327  Sum_probs=95.8

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      .++++++.+++|+.+|+++|.+++++++||++    ++   +++|++|.+||++.+.....      .....        
T Consensus        12 ~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~----~~---~~vGiit~~Di~~~~~~~~~------~~~~~--------   70 (127)
T d2rc3a1          12 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDT--------   70 (127)
T ss_dssp             CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGS--------
T ss_pred             CCccEEECCcCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEccchhhhhhhhcc------cccce--------
Confidence            35789999999999999999999999999993    35   79999999999876543211      11122        


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                          +++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        71 ----~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          71 ----QVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ----BGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ----eEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                34555888999999999999999999999999999998 69999999999998753

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=8.6e-16  Score=132.74  Aligned_cols=119  Identities=14%  Similarity=0.184  Sum_probs=100.9

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++++++++.+|++.|.+++++++||++   +++   +++|++|.+|+++.+......      ....     
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d---~~~---~~~Giit~~di~~~~~~~~~~------~~~~-----   69 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD---DNG---NDVGLLSERSIIKRFIPRNKK------PDEV-----   69 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHTGGGCCC------GGGS-----
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeec---cCC---cccceEEeechhhhhhhhccc------cccc-----
Confidence            35888999999999999999999999999999993   445   799999999998766532111      1122     


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                             +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..||++.+
T Consensus        70 -------~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          70 -------PIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             -------BGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             -------ccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence                   33455888999999999999999999999999999999999999999999998744

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=3.2e-16  Score=131.97  Aligned_cols=116  Identities=19%  Similarity=0.275  Sum_probs=96.7

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++......      ....      
T Consensus         6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~~---~~~Giit~~Di~~~~~~~~~~------~~~~------   67 (123)
T d1y5ha3           6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICG---DDD---RLHGMLTDRDIVIKGLAAGLD------PNTA------   67 (123)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEEC---GGG---BEEEEEEHHHHHHTTGGGTCC------TTTS------
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEe---ccc---hhhhhhhhhhHhhhhhhcCCC------cccc------
Confidence            4777899999999999999999999999999993   345   799999999998755432211      0111      


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                            .++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.
T Consensus        68 ------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          68 ------TAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             ------BHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ------eEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence                  23444888999999999999999999999999999998 5899999999999873

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=1.8e-15  Score=128.98  Aligned_cols=119  Identities=17%  Similarity=0.315  Sum_probs=100.8

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++++++|+.+|+++|.+++++++||++   +++   +++|++|..||++++.....       ....+     
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Giit~~di~~~~~~~~~-------~~~~~-----   71 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN---DDG---NVVGFFTKSDIIRRVIVPGL-------PYDIP-----   71 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTTCC-------CTTSB-----
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEec---ccc---eeeeeeeHHHHHHHHhhccC-------cccee-----
Confidence            5888999999999999999999999999999993   345   79999999999987653211       11233     


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  418 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~  418 (500)
                             ++++|.+++.++.+++++.+|+++|.+++++++||++ +|+++|+||.+|+++...+.
T Consensus        72 -------v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          72 -------VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             -------GGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred             -------EeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence                   4455888999999999999999999999999999875 69999999999999976654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=8.1e-16  Score=132.55  Aligned_cols=125  Identities=12%  Similarity=0.187  Sum_probs=103.5

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++|+.+|+++|.+++++++||++   +++   +++|+++..|+++++........ .......++    
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~---~~~---~~~g~i~~~di~~~~~~~~~~~~-~~~~~~~~v----   75 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID---DDN---KVVGIVTVVNAIKQLAKAVDKLD-PDYFYGKVV----   75 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHHHHHHHTC-THHHHTCBH----
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc---ccC---ccccccccccchhhhhccccccc-cccccCCCH----
Confidence            4788899999999999999999999999999993   345   69999999999998865432211 011122333    


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                              +++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+.+
T Consensus        76 --------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          76 --------KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             --------HHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence                    44488899999999999999999999999999999999999999999999986644

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.62  E-value=7.3e-16  Score=138.42  Aligned_cols=129  Identities=13%  Similarity=0.221  Sum_probs=97.5

Q ss_pred             CCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccc-cccC-----cccccHHHHHhcCCC
Q 010821          367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAY-AHIN-----LSEMTIHQALQLGQD  439 (500)
Q Consensus       367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~-~~~~-----~~~~~v~~~l~~~~~  439 (500)
                      .+++++.++.++.+|++.|.+++++++||+|+ +++++|++|..|++..+..... ....     .............  
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  107 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVE--  107 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHHH--
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchhhhcccc--
Confidence            46899999999999999999999999999985 5899999999999975532111 0000     0001111110000  


Q ss_pred             CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCC----CCeEEEEEehHHHHHHhh
Q 010821          440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG----SKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~----~g~liGiIS~~DIl~~l~  499 (500)
                        ...+.|..++++|.++++|.+|+++|.++++|++||||++    +++++|+||++||+++|.
T Consensus       108 --~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         108 --RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             --HHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             --eeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence              0113578899999999999999999999999999999953    237999999999999985

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=3.8e-15  Score=124.92  Aligned_cols=114  Identities=12%  Similarity=0.189  Sum_probs=98.6

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.+++.++.+++|+.+|+++|.+++.+++||++   +++   +++|+++..|++++             ....++   
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd---~~~---~~~Gii~~~dl~~~-------------~~~~~v---   62 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDL-------------DLDSSV---   62 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTS-------------CTTSBS---
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEe---CCc---eeEEEeehhhhhhh-------------hccccc---
Confidence            45788999999999999999999999999999993   456   79999999999732             112233   


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                               .++|..+++++++++++.+++++|.+++...+||+|++|+++|+||..|+++.+.+
T Consensus        63 ---------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          63 ---------FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ---------GGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------cccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence                     44477889999999999999999999999999999999999999999999987654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.61  E-value=2.5e-15  Score=125.80  Aligned_cols=114  Identities=16%  Similarity=0.267  Sum_probs=98.2

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++|+.+|++.|.+++++.+||.+    ++   +++|++|.+||++++.....       ....++.+  
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~----~~---~~~Gvit~~Di~~~l~~~~~-------~~~~~v~~--   68 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWE--   68 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHH--
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe----CC---cEEEEEEeeecccccccccc-------ccceeEee--
Confidence            4788999999999999999999999999999993    35   79999999999998875321       11233443  


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                                +|.+++.++.+++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus        69 ----------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          69 ----------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ----------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ----------ecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                      4888999999999999999999999999999986 6899999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.1e-15  Score=130.28  Aligned_cols=120  Identities=9%  Similarity=0.139  Sum_probs=97.9

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      ..+++++.+++++.+|+++|.+++++++||++   +++   +++|++|..||++++........  ......        
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd---~~~---~~vGiit~~di~~~~~~~~~~~~--~~~~~~--------   74 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSY---RLHGLIGTNMIMNSIFGLERIEF--EKLDQI--------   74 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTC---BEEEEEEHHHHHHHHBCSSSBCG--GGTTTS--------
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEee---ccc---ccccEEEcchhHHHhhccccccc--cccccc--------
Confidence            56799999999999999999999999999993   346   79999999999998865432210  011112        


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                          +++++|.+++.++.+++++.+++.+|.+++  .+||+|++|+++|+||.+|+++.+.+
T Consensus        75 ----~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          75 ----TVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             ----BHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----cccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence                344558889999999999999999997654  59999999999999999999987654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.60  E-value=4.5e-15  Score=130.33  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=105.6

Q ss_pred             CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCc-cccccc--
Q 010821          272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL-PILKLP--  348 (500)
Q Consensus       272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~-~~l~~~--  348 (500)
                      ..+|.++++++.+++|+.+|+++|.+++++++||++. .+++   .++|+++..|+++++........... ......  
T Consensus        14 ~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~   89 (160)
T d2d4za3          14 GDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEE   89 (160)
T ss_dssp             TSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHH
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhccccch
Confidence            4478999999999999999999999999999999952 2345   79999999999998876533211000 000000  


Q ss_pred             c---ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821          349 I---CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  415 (500)
Q Consensus       349 v---~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~  415 (500)
                      .   ...........++++|.++++++.+++++.+|+++|.+++++++||++ +|+++|+||++||++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          90 IYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            0   000011112245677889999999999999999999999999999997 69999999999999865

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=134.88  Aligned_cols=128  Identities=13%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             eEecCCCCHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC-------CCC
Q 010821          370 AMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG-------QDS  440 (500)
Q Consensus       370 ~~v~~~~~l~ea~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~-------~~~  440 (500)
                      +.+.++.++.+|+++|.+++++++||+  +++++++|+||.+||+.++.................+....       ...
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            446678899999999999999999999  45779999999999998664322211100001100000000       000


Q ss_pred             CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821          441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  499 (500)
Q Consensus       441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~  499 (500)
                      ..-.++|.+++++|.+++++.+|+++|.+++++++||+|  +|+++|+||++||++++.
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            001247888999999999999999999999999999988  589999999999999874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.59  E-value=7.2e-16  Score=131.86  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=100.7

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++.+++++.+|+++|.+++++++||++     +   +++|+++..++++++.........  .......    
T Consensus         6 lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-----~---~lvg~~~~~~~~~~~~~~~~~~~~--~~~~~~~----   71 (135)
T d3ddja2           6 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKDSCS--QGDLYHI----   71 (135)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC---CC--HHHHHHH----
T ss_pred             EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe-----c---ceeceeeccchhhhhccccccchh--hhhcccc----
Confidence            4777889999999999999999999999999993     2   599999999999876543221100  0000001    


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                         ...+++++|..+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++..
T Consensus        72 ---~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 ---STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             ---HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ---ccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence               112456779999999999999999999999999999999999999999999999998654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=1.5e-15  Score=127.68  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=80.6

Q ss_pred             ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821          274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  353 (500)
Q Consensus       274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  353 (500)
                      +|.++++++++++++.+|+++|.+++++++||++   ++|   +++|++|.+|++....             ..+     
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~G~it~~dl~~~~~-------------~~~-----   61 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVN---KEG---KLVGIISVKRILVNPD-------------EEQ-----   61 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEEC---TTC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEe---ccc---cchhhhhcchhhhhhc-------------ccc-----
Confidence            3677899999999999999999999999999993   456   7999999999984211             122     


Q ss_pred             ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                             ++++|.++++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++.
T Consensus        62 -------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          62 -------LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -------hhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence                   345588899999999999999999999999999999999999999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=8.9e-17  Score=134.89  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=59.5

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      .++++++.|++|+.+|+++|.+++++++||++.....+   +++|++|.+|+.......          +..++...   
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~---   66 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI---   66 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C---
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE---
Confidence            45568999999999999999999999999995222345   799999999986332211          11222211   


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                             ..+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.
T Consensus        67 -------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 -------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             -------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                   0134568899999999999999999999999999999999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.57  E-value=7.9e-15  Score=124.62  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821          273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  352 (500)
Q Consensus       273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  352 (500)
                      .+|.++++++++++|+.+|+++|.+++++++||++.| ..+   +++|+++..|+++++......        ....   
T Consensus         5 dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~---~~iGi~~~~dl~~~~~~~~~~--------~~~~---   69 (131)
T d2riha1           5 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPK---RPVAVVSERDILRAVAQRLDL--------DGPA---   69 (131)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEE---EEEEEEEHHHHHHHHHTTCCT--------TSBS---
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCC---EEEEEEeeecccccccccccc--------cccc---
Confidence            4688899999999999999999999999999999532 234   799999999999887654221        0111   


Q ss_pred             cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821          353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  414 (500)
Q Consensus       353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~  414 (500)
                                ..+..++.++.+++++.+|+++|.+++++++||+|++|+++|+||..||++.
T Consensus        70 ----------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          70 ----------MPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ----------GGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ----------ccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                      1134567789999999999999999999999999999999999999999863

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.57  E-value=1.5e-14  Score=126.37  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=100.3

Q ss_pred             cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821          275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  354 (500)
Q Consensus       275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  354 (500)
                      ..++++++.+++|+.+|+++|.+++++++||++   +++   +++|++|..||++++......      ....++.+.- 
T Consensus        10 ~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd---~~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~-   76 (153)
T d2ooxe2          10 TWSNLATASMETKVYDVIKMLAEKNISAVPIVN---SEG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEAL-   76 (153)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC---GGG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHH-
T ss_pred             CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeec---ccc---eEEEEEEeeeeeehhcccccc------ccccchhhhe-
Confidence            345799999999999999999999999999994   345   799999999999887653221      1222332220 


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                           .....+..+++++.+++++.++++.|.+++++++||+|++|+++|+||++|+++....
T Consensus        77 -----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          77 -----LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             -----HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             -----eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence                 1223355678899999999999999999999999999999999999999999986543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=8.4e-15  Score=126.72  Aligned_cols=123  Identities=16%  Similarity=0.199  Sum_probs=99.0

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821          276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  355 (500)
Q Consensus       276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  355 (500)
                      .++++++.+++|+.+|+++|.+++++++||++   +++   +++|++|..||++++......      ....++...   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd---~~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVD---EKG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccc---cCC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            45789999999999999999999999999993   456   799999999998766543211      112222211   


Q ss_pred             ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821          356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  416 (500)
Q Consensus       356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~  416 (500)
                         ......|..+++++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++-
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               0223446778899999999999999999999999999999999999999999998653

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=121.85  Aligned_cols=133  Identities=11%  Similarity=0.103  Sum_probs=99.6

Q ss_pred             eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCc----cccc-cccccccc
Q 010821          280 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL----PILK-LPICAIPV  354 (500)
Q Consensus       280 v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~----~~l~-~~v~~l~i  354 (500)
                      +.+.++.|+.+|+++|.+++++++||+.. ++++   +++|++|.+||++++...........    ..+. ........
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            45677889999999999999999999952 3445   79999999999998865322211000    0000 01111112


Q ss_pred             cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821          355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  417 (500)
Q Consensus       355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~  417 (500)
                      .....+++++|.++++++.+++++.+++++|.+++++++||++ +|+++|+||++||++.+.+
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            2223357888999999999999999999999999999999987 7899999999999987654

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.58  E-value=2.7e-08  Score=78.42  Aligned_cols=64  Identities=22%  Similarity=0.383  Sum_probs=53.2

Q ss_pred             eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCC
Q 010821           27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSE   97 (500)
Q Consensus        27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~   97 (500)
                      -++|+ |...|++|.|+++++.    .+|.+.  .+|.|++++++.+|.+ |+|.|||.|+.||.....+++
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~--~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~~   86 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSL--GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPDG   86 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEE--ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTTC
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEc--cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCCC
Confidence            47887 9999999999997654    478885  3799999999999976 999999999999987654443

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.8e-07  Score=75.65  Aligned_cols=65  Identities=25%  Similarity=0.413  Sum_probs=51.2

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEcCCceEEEEEEE---CCEEe--eCCCCCe
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV---DGEWR--HDEHQPF   93 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V---Dg~w~--~d~~~~~   93 (500)
                      ++|+ |...|++|+|+|+||+|... .+|.+. ...|.|++.++....-..|||.|   ||+|.  .||-+-.
T Consensus        22 v~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~   93 (110)
T d1m7xa1          22 TRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFE   93 (110)
T ss_dssp             EEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSS
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCceEEeEEe-cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhcc
Confidence            7886 99999999999999999865 478653 35689999998666666788887   78765  4776643

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.72  E-value=5e-06  Score=64.13  Aligned_cols=60  Identities=20%  Similarity=0.230  Sum_probs=46.9

Q ss_pred             EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECC-EEeeCCCCCe
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPF   93 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg-~w~~d~~~~~   93 (500)
                      ++|+ |...|++|.|++.+.+|   .+|.+.  .+|+|++.++ +.+| +.|+|.||| .++.||....
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~--~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERD--EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCC--TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeC--CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            5676 99999999999875443   578774  5799999995 7788 669999987 5677876654

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.69  E-value=4.8e-05  Score=60.60  Aligned_cols=59  Identities=20%  Similarity=0.505  Sum_probs=45.4

Q ss_pred             CceeeEEEEecCC---CceEEEEEccC---CCCCC--CCCCccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           23 TVLIPMRFVWPYG---GRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        23 ~~~~~~~f~~~~~---~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      +..|+++|.-+..   |++|+|+||..   +|++.  ++|...+  ...+.|++.+.||+| .++|||++
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            3457888885544   79999999965   89874  4776532  235689999999998 69999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.69  E-value=7.8e-05  Score=58.99  Aligned_cols=58  Identities=26%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             ceeeEEEEecC----CCceEEEEEccC---CCCCC--CCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.=..    .|+.|+|+|+-.   +|++.  ++|.....  ..+.|++.+.||+| .++|||++
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           4 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            35788887542    389999999965   89754  57875432  34689999999999 59999997

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=0.00011  Score=58.26  Aligned_cols=58  Identities=21%  Similarity=0.356  Sum_probs=45.3

Q ss_pred             ceeeEEEEec----CCCceEEEEEcc---CCCCCC--CCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           24 VLIPMRFVWP----YGGRSVFLSGSF---NRWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        24 ~~~~~~f~~~----~~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ..++++|.=.    ..|+.|+|+||.   .+|++.  ++|.....  ....|.+++.||.| .++|||++
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            4688899853    348999999995   589854  57876432  34689999999998 69999998

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.65  E-value=0.0001  Score=58.83  Aligned_cols=57  Identities=21%  Similarity=0.410  Sum_probs=42.0

Q ss_pred             eeeEEEEecC---CCceEEEEEccC---CCCCC--CCCCcccC-----CCCeEEEEEEcCCc-eEEEEEEE
Q 010821           25 LIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVEG-----CPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        25 ~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~-----~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      .|.++|.-+.   .|+.|+|+|+..   +|++.  .+|...++     ..+.|++++.||+| .++|||++
T Consensus         7 ~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           7 SVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             EEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            4555555443   389999999976   89875  46665321     24579999999998 69999997

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.42  E-value=0.00014  Score=56.73  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=40.7

Q ss_pred             eeEEEEe----cCCCceEEEEEccC---CCCCCC--CCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           26 IPMRFVW----PYGGRSVFLSGSFN---RWSELL--PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        26 ~~~~f~~----~~~~~~V~l~Gsf~---~W~~~~--~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      ++++|.=    ...|+.|+|+|+..   +|++..  .|.......+.|++.+.||+| .++|||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            4555553    33489999999988   998652  222222345689999999998 59999998

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.20  E-value=0.0026  Score=50.71  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             EEEE-ecCCCceEEEEEccCCC-CCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 010821           28 MRFV-WPYGGRSVFLSGSFNRW-SEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE   84 (500)
Q Consensus        28 ~~f~-~~~~~~~V~l~Gsf~~W-~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~   84 (500)
                      +.|+ |...|++|.|+--..+| ... .+|... ..+|+|++.++ +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-~~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEc-CCCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            5676 99999999997433333 322 244432 35689999987 778875 78888764

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.44  E-value=0.01  Score=50.13  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             eeEEEE-ecCCCceEEEEEccCCCCCC----CCCCcccCCCCeEEEEEE--------cCCceEEEEEEECCEE
Q 010821           26 IPMRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS--------IPPGYHQYKFCVDGEW   85 (500)
Q Consensus        26 ~~~~f~-~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~--------L~~g~~~ykf~VDg~w   85 (500)
                      .-++|. |...|++|.|+--.++|...    ++|.+  +.+|+|.+.++        +.+|.+ |.|.|||.|
T Consensus        16 ~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~--~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          16 ANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP--AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             SEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE--CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             eeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc--ccccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            346785 99999999999977677542    35665  45799999986        667755 888999975

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=89.88  E-value=1.4  Score=35.55  Aligned_cols=59  Identities=14%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             CCceeeEEEEecCC--------CceEEEEEccCCCC----CCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821           22 DTVLIPMRFVWPYG--------GRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (500)
Q Consensus        22 ~~~~~~~~f~~~~~--------~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V   81 (500)
                      +...+-+||.|.+.        .+.|+|-++--...    ....|.+.. ..++|..++.||.. +-.|+|+-
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~-gTDVW~~s~~vpad~rgsY~fip   90 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIA-GTDVWQWTTQLNANWRGSYCFIP   90 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECT-TSSEEEEEEEEETTCEEEEEEEE
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCC-CCCeEEEEEEECcccEEEEEEEe
Confidence            44678899999873        35699987655333    223577774 56899999999997 78999984

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=88.14  E-value=0.63  Score=36.47  Aligned_cols=59  Identities=12%  Similarity=0.076  Sum_probs=40.1

Q ss_pred             CceeeEEEE-ecCCCceEEEE-EccCCCCCC-CCCCccc-CCC---CeEEEEEEcCCceEEEEEEE
Q 010821           23 TVLIPMRFV-WPYGGRSVFLS-GSFNRWSEL-LPMSPVE-GCP---TVFQIIWSIPPGYHQYKFCV   81 (500)
Q Consensus        23 ~~~~~~~f~-~~~~~~~V~l~-Gsf~~W~~~-~~m~~~~-~~~---~~~~~~~~L~~g~~~ykf~V   81 (500)
                      ...+.++++ ..+..++|.|. |+=-.|... .+|.+.. ...   ..|+++++++.++..|+|.+
T Consensus        29 g~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          29 TQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             TCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             CCEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            346788887 44557999887 444456432 3565432 122   37899999999999999998