Citrus Sinensis ID: 010828

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQREAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGTLALESSNPYNKN
cEEEccccEEEEEEccccccEEEccEEEEEEcEEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccc
cEEEEccccEEEEEccccccEEEEccEEEEccccEEEEEEccEEEEEEHHHHccccccEEEEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHEEEEcccHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccHHHHccccccccccccccccEEEccccccccc
MFRVASASQYLAItgtgindvklakkswvfpgqyctvfditpvnyDFEVQAMSAEKlefklpavftigpreddRDSLLKYAKliapkdqnsiHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANikqlvdvpgheyfsylgqKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQrqgdgqkeeMRVKTEVKVFENQREAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTslggdyraVKDFLMIDRGVYQEMARINAEAVRglqpklsiwtnnesggeaggdassSAMREVSGiyralpplfqtiydqtgmtpppfmgtlaqtgmtppqipgtlalessnpynkn
mfrvasasqylaitgtgindVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAvftigpreddRDSLLKYAKliapkdqnsihvREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGevgaklregqtlqnaakidaetkiikvqrqgdgqkeemrVKTEVKVFENQREAEVAEANAELAkkkagwareakvaevestkavalrdaelQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSistslggdyrAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGtlalessnpynkn
MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQReaevaeanaelakkkaGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYqkekeaeaqkataeaaFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNesggeaggdasssaMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGTLALESSNPYNKN
*******SQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQK**********************************************************************************************************************************FVSKANVEYEAQVQEANWELYKKQ**AEAILY**************AAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWT********************SGIYRALPPLFQTIYDQTG***********************************
MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIA**********EIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLG*************************************************************************************************************************************VS*ANVEYEAQVQE********QKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMA*I*******LQPKLSIWT********************SGIYRALPPLFQTIYDQTGMTPPPF*****************************
MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIK************RVKTEVKVFENQREAEVAEAN**********************KAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYQKE**********EAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNES*************REVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGTLALE********
MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQREAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNE***********SAMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGTLALESSN*****
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MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQREAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQEANWELYKKQKEAEAILYxxxxxxxxxxxxxxxxxxxxxQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMTPPQIPGTLALESSNPYNKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query499 2.2.26 [Sep-21-2011]
D2XNQ8478 Flotillin-like protein 1 N/A no 0.943 0.985 0.720 0.0
D2XNR0474 Flotillin-like protein 3 N/A no 0.941 0.991 0.726 0.0
D2XNQ9480 Flotillin-like protein 2 N/A no 0.947 0.985 0.709 0.0
D2XNR2472 Flotillin-like protein 6 N/A no 0.931 0.985 0.719 0.0
D2XNR1475 Flotillin-like protein 4 N/A no 0.939 0.987 0.740 0.0
Q4V3D6463 Flotillin-like protein 2 yes no 0.925 0.997 0.687 0.0
Q501E6470 Flotillin-like protein 1 yes no 0.935 0.993 0.677 0.0
Q9AV57485 Flotillin-like protein 1 yes no 0.955 0.983 0.693 0.0
Q9LV90479 Flotillin-like protein 3 no no 0.935 0.974 0.658 1e-175
Q8LNW4499 Flotillin-like protein 2 no no 0.949 0.949 0.609 1e-171
>sp|D2XNQ8|FLOT1_MEDTR Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/476 (72%), Positives = 418/476 (87%), Gaps = 5/476 (1%)

Query: 1   MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFK 60
           M+RVA AS+YL ITG GI+DVKL KK+W+FPGQ CTVFD++PVNY FEVQAMSAEKL F 
Sbjct: 1   MYRVAKASEYLVITGAGIDDVKLEKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFV 60

Query: 61  LPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK 120
           LPAVFTIGPR DD +SLLKYAKLI+P D+ S HV E+V+GIIEGETRVL ASMTMEEVF+
Sbjct: 61  LPAVFTIGPRVDDYESLLKYAKLISPHDKLSNHVNELVQGIIEGETRVLVASMTMEEVFR 120

Query: 121 GTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDV 180
           GTKEFKQEVF+KVQLELNQFGL IYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQA+VDV
Sbjct: 121 GTKEFKQEVFDKVQLELNQFGLWIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDV 180

Query: 181 AEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQREA 240
           AEA+MKGE+G+KLREGQT+QNAAKIDAETK+I +QR G+G+K+ ++V+TEVKVFENQREA
Sbjct: 181 AEAKMKGEIGSKLREGQTIQNAAKIDAETKVIAMQRAGEGEKQGIKVRTEVKVFENQREA 240

Query: 241 EVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVS 300
           EVAEAN+ELAKKKA W   A+VAE+E+ KAVALR+AELQ EVE+MNA T+ EKL+A+F+S
Sbjct: 241 EVAEANSELAKKKAAWTMAAQVAELEAAKAVALREAELQGEVERMNALTTTEKLKADFLS 300

Query: 301 KANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTK 360
           KA+VEY+ +VQEANWELYKKQKEAEAILY+K+ EAEAQKA A++ FYARKQ A+ +LY K
Sbjct: 301 KASVEYDTKVQEANWELYKKQKEAEAILYEKKAEAEAQKALADSTFYARKQEAEAELYAK 360

Query: 361 LKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPK 420
            KEAEG++ LG AQG Y+ ++  +LG +Y AV+D+LMI+ G++QE+A+INAEAVRGL+PK
Sbjct: 361 KKEAEGIMTLGNAQGAYVSTLLNALGNNYTAVRDYLMINGGMFQEIAKINAEAVRGLEPK 420

Query: 421 LSIWTNNESGGEAGGDASSSA--MREVSGIYRALPPLFQTIYDQTGMTPPPFMGTL 474
           +SIWTN   GG+  G  +  A  M+EV+G+Y+ LPPLF+T+++QTGM PP +MG+L
Sbjct: 421 ISIWTN---GGDNNGGITEGAMGMKEVAGVYKMLPPLFKTVHEQTGMFPPAWMGSL 473
May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles (By similarity). May be involved in nodule formation.
Medicago truncatula (taxid: 3880)
>sp|D2XNR0|FLOT3_MEDTR Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1 Back     alignment and function description
>sp|D2XNQ9|FLOT2_MEDTR Flotillin-like protein 2 OS=Medicago truncatula GN=FLOT2 PE=2 SV=1 Back     alignment and function description
>sp|D2XNR2|FLOT6_MEDTR Flotillin-like protein 6 OS=Medicago truncatula GN=FLOT6 PE=2 SV=1 Back     alignment and function description
>sp|D2XNR1|FLOT4_MEDTR Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3D6|FLOT2_ARATH Flotillin-like protein 2 OS=Arabidopsis thaliana GN=FLOT2 PE=2 SV=1 Back     alignment and function description
>sp|Q501E6|FLOT1_ARATH Flotillin-like protein 1 OS=Arabidopsis thaliana GN=FLOT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AV57|FLOT1_ORYSJ Flotillin-like protein 1 OS=Oryza sativa subsp. japonica GN=FLOT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LV90|FLOT3_ARATH Flotillin-like protein 3 OS=Arabidopsis thaliana GN=FLOT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8LNW4|FLOT2_ORYSJ Flotillin-like protein 2 OS=Oryza sativa subsp. japonica GN=FLOT2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
224143233483 predicted protein [Populus trichocarpa] 0.961 0.993 0.741 0.0
255557751481 Flotillin-1, putative [Ricinus communis] 0.955 0.991 0.744 0.0
224092534484 predicted protein [Populus trichocarpa] 0.955 0.985 0.727 0.0
357466105 959 Flotillin-like protein [Medicago truncat 0.943 0.491 0.720 0.0
147837045488 hypothetical protein VITISV_002157 [Viti 0.955 0.977 0.75 0.0
300680951478 RecName: Full=Flotillin-like protein 1 g 0.943 0.985 0.720 0.0
225430420488 PREDICTED: flotillin-like protein 1 [Vit 0.955 0.977 0.747 0.0
351722212476 nodulin [Glycine max] gi|3851530|gb|AAC7 0.951 0.997 0.732 0.0
300680953474 RecName: Full=Flotillin-like protein 3 g 0.941 0.991 0.726 0.0
255644924476 unknown [Glycine max] 0.951 0.997 0.723 0.0
>gi|224143233|ref|XP_002324888.1| predicted protein [Populus trichocarpa] gi|222866322|gb|EEF03453.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/480 (74%), Positives = 425/480 (88%)

Query: 1   MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFK 60
           M+RVAS S++L ITG GI+D+KLAKK W+ PGQ CTVFD++PVNY FEVQAMSAEKL F 
Sbjct: 1   MYRVASPSEFLVITGVGISDIKLAKKGWILPGQSCTVFDVSPVNYTFEVQAMSAEKLPFV 60

Query: 61  LPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK 120
           LPAVFTIGPR DD  SL KYAKLI+  D+ S HV+E+V+GIIEGETRVLAASMTMEEVFK
Sbjct: 61  LPAVFTIGPRVDDEQSLFKYAKLISRHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFK 120

Query: 121 GTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDV 180
           GTKEFKQEVFEKVQLELNQFGLLIYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQA+VDV
Sbjct: 121 GTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDV 180

Query: 181 AEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQREA 240
           AEA+MKGEVG+K REGQTLQNAA+IDAETKII  QRQGDG+KEE++VKTEVK++EN REA
Sbjct: 181 AEAKMKGEVGSKQREGQTLQNAARIDAETKIIATQRQGDGKKEEIKVKTEVKIYENHREA 240

Query: 241 EVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVS 300
           EVAEANA+LAKKKAGW++EA+VAEVE+TKAV+LR+AELQREVE+MNA T  EKL+AEF+S
Sbjct: 241 EVAEANADLAKKKAGWSKEAQVAEVEATKAVSLREAELQREVERMNALTRTEKLKAEFLS 300

Query: 301 KANVEYEAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTK 360
           +A+VEYE +VQEANWELY KQK AEAILY+K+KEA+AQKATA+A FYAR+Q ADG+LY+K
Sbjct: 301 QASVEYETKVQEANWELYTKQKAAEAILYEKQKEADAQKATADATFYARQQVADGELYSK 360

Query: 361 LKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPK 420
            KEAEGLVAL +AQG Y++++  +LGG+Y A++D+LMI+ G++QE+ARINA+AV GLQPK
Sbjct: 361 QKEAEGLVALAQAQGVYIRTLLDALGGNYAALRDYLMINSGMFQEIARINADAVHGLQPK 420

Query: 421 LSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLAQTGMT 480
           +SIWTN  SG    G    +AM+EV+G+Y+ LPPLF+T+ DQTGM PP +MGTL  +  +
Sbjct: 421 ISIWTNGNSGEANDGTGGGNAMKEVAGVYKMLPPLFKTVQDQTGMLPPAWMGTLTDSSHS 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557751|ref|XP_002519905.1| Flotillin-1, putative [Ricinus communis] gi|223540951|gb|EEF42509.1| Flotillin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224092534|ref|XP_002309650.1| predicted protein [Populus trichocarpa] gi|222855626|gb|EEE93173.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466105|ref|XP_003603337.1| Flotillin-like protein [Medicago truncatula] gi|355492385|gb|AES73588.1| Flotillin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147837045|emb|CAN77054.1| hypothetical protein VITISV_002157 [Vitis vinifera] Back     alignment and taxonomy information
>gi|300680951|sp|D2XNQ8.1|FLOT1_MEDTR RecName: Full=Flotillin-like protein 1 gi|282597660|gb|ADA83094.1| flotillin-like protein 1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225430420|ref|XP_002283077.1| PREDICTED: flotillin-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351722212|ref|NP_001237748.1| nodulin [Glycine max] gi|3851530|gb|AAC72337.1| nodulin [Glycine max] Back     alignment and taxonomy information
>gi|300680953|sp|D2XNR0.1|FLOT3_MEDTR RecName: Full=Flotillin-like protein 3 gi|282597664|gb|ADA83096.1| flotillin-like protein 3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255644924|gb|ACU22962.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
UNIPROTKB|D2XNR0474 FLOT3 "Flotillin-like protein 0.941 0.991 0.667 5.7e-178
UNIPROTKB|D2XNR1475 FLOT4 "Flotillin-like protein 0.939 0.987 0.679 1.2e-177
UNIPROTKB|D2XNQ9480 FLOT2 "Flotillin-like protein 0.951 0.989 0.653 1.1e-167
TAIR|locus:2146965470 FLOT1 "AT5G25250" [Arabidopsis 0.919 0.976 0.637 1.7e-165
TAIR|locus:2146975463 AT5G25260 "AT5G25260" [Arabido 0.927 1.0 0.636 5.3e-159
TAIR|locus:2177729479 AT5G64870 "AT5G64870" [Arabido 0.937 0.977 0.620 9.2e-155
FB|FBgn0024754426 Flo-1 "Flotillin-1" [Drosophil 0.715 0.838 0.231 3.1e-17
UNIPROTKB|Q81YS5526 BAS0525 "SPFH domain/band 7 fa 0.436 0.414 0.241 1.8e-09
TIGR_CMR|BA_0557526 BA_0557 "SPFH domain/band 7 fa 0.436 0.414 0.241 1.8e-09
MGI|MGI:1100500428 Flot1 "flotillin 1" [Mus muscu 0.450 0.525 0.227 2e-08
UNIPROTKB|D2XNR0 FLOT3 "Flotillin-like protein 3" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
 Score = 1650 (585.9 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
 Identities = 317/475 (66%), Positives = 387/475 (81%)

Query:     1 MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFK 60
             M+RVA AS+YLAITG GI+D+KL KK+W+FPGQ CTVFD++PVNY FEVQAMSAEKL F 
Sbjct:     1 MYRVAKASEYLAITGAGIDDIKLQKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFV 60

Query:    61 LPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK 120
             LPAVFTIGPR DD++SLLKYAKLI+P D++S HV E+V+GIIEGETRVLAASMTMEEVF+
Sbjct:    61 LPAVFTIGPRVDDQESLLKYAKLISPHDRHSNHVNELVQGIIEGETRVLAASMTMEEVFR 120

Query:   121 GTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDV 180
             GTK+FKQEVF+KVQLELNQFGLLIYNAN+KQLVDVPGHEYFSYLGQKTQMEAANQAKVDV
Sbjct:   121 GTKQFKQEVFDKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDV 180

Query:   181 AEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQRXX 240
             AEA+MKGE+G+KLR GQTLQNAAKIDAETK+I +QR G+ +K+ ++V+TEVKVFENQR  
Sbjct:   181 AEAKMKGEIGSKLRVGQTLQNAAKIDAETKVIAMQRAGESEKQGIKVRTEVKVFENQREA 240

Query:   241 XXXXXXXXXXXXXXGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVS 300
                            W + A+VAEVE+ KAVALR+AELQ EVEKMNA T+ EKL+A+ +S
Sbjct:   241 EVAEANSELAKKKAAWTKAAQVAEVEAKKAVALREAELQGEVEKMNALTTTEKLKADLLS 300

Query:   301 KANVEYEAQVQEANWELYKKQKEAEAILYXXXXXXXXXXXXXXXXFYARKQAADGQLYTK 360
             KA+V+YE +VQEANWELYKKQKEAEAIL+                FYARKQ A+ +LY K
Sbjct:   301 KASVQYETKVQEANWELYKKQKEAEAILFEKKAEAEAQKALADSTFYARKQEAEAELYAK 360

Query:   361 LKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPK 420
              KEAEG+V LG AQG Y+ ++  +LG +Y AV+D+LMI+ G++QE+A+INAEAVRGL+PK
Sbjct:   361 KKEAEGIVTLGNAQGAYVSTLLNALGNNYTAVRDYLMINGGMFQEIAKINAEAVRGLEPK 420

Query:   421 LSIWTNNXXXXXXXXXXXXXXMREVSGIYRALPPLFQTIYDQTGMTPPPFMGTLA 475
             +SIWTN               M+EV+G+Y+ LPPLF+T+++QTGM PP +MG+L+
Sbjct:   421 ISIWTNGGDNSGGEGA-----MKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGSLS 470
GO:0048364 "root development" evidence=IMP
UNIPROTKB|D2XNR1 FLOT4 "Flotillin-like protein 4" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|D2XNQ9 FLOT2 "Flotillin-like protein 2" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
TAIR|locus:2146965 FLOT1 "AT5G25250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146975 AT5G25260 "AT5G25260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177729 AT5G64870 "AT5G64870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024754 Flo-1 "Flotillin-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q81YS5 BAS0525 "SPFH domain/band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0557 BA_0557 "SPFH domain/band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
MGI|MGI:1100500 Flot1 "flotillin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D2XNQ9FLOT2_MEDTRNo assigned EC number0.70920.94780.9854N/Ano
D2XNQ8FLOT1_MEDTRNo assigned EC number0.72050.94380.9853N/Ano
Q501E6FLOT1_ARATHNo assigned EC number0.67760.93580.9936yesno
D2XNR0FLOT3_MEDTRNo assigned EC number0.72630.94180.9915N/Ano
D2XNR1FLOT4_MEDTRNo assigned EC number0.74050.93980.9873N/Ano
D2XNR2FLOT6_MEDTRNo assigned EC number0.71940.93180.9851N/Ano
Q9AV57FLOT1_ORYSJNo assigned EC number0.69370.95590.9835yesno
Q4V3D6FLOT2_ARATHNo assigned EC number0.68760.92580.9978yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
cd03399128 cd03399, Band_7_flotillin, Band_7_flotillin: a sub 1e-25
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 9e-13
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 7e-10
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 3e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 5e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
PRK05035695 PRK05035, PRK05035, electron transport complex pro 0.003
COG3064387 COG3064, TolA, Membrane protein involved in colici 0.004
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  101 bits (254), Expect = 1e-25
 Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 38  FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVRE 96
             +T +      +  ++ + +   + AVF +     +        + +    ++   + E
Sbjct: 2   LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFL---GKSEEEIEE 58

Query: 97  IVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVP 156
           +VK ++EG  R +  +MT+EE+++   +F ++V E V  +LN+ GL + +  IK + D  
Sbjct: 59  LVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTD 118

Query: 157 GHEYFSYLGQK 167
           G  Y + LG  
Sbjct: 119 G--YLNNLGDA 127

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 499
KOG2668428 consensus Flotillins [Intracellular trafficking, s 100.0
COG2268548 Uncharacterized protein conserved in bacteria [Fun 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 99.93
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 99.93
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.92
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 99.91
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.91
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 99.91
PRK11029334 FtsH protease regulator HflC; Provisional 99.91
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 99.9
KOG2620301 consensus Prohibitins and stomatins of the PID sup 99.89
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 99.89
PRK10930419 FtsH protease regulator HflK; Provisional 99.87
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.85
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.84
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.83
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.83
KOG2621288 consensus Prohibitins and stomatins of the PID sup 99.79
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.79
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.53
KOG2668428 consensus Flotillins [Intracellular trafficking, s 99.44
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.36
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.05
KOG3090290 consensus Prohibitin-like protein [Posttranslation 98.92
KOG3083271 consensus Prohibitin [Posttranslational modificati 98.71
KOG2962322 consensus Prohibitin-related membrane protease sub 97.97
PF13421211 Band_7_1: SPFH domain-Band 7 family 97.64
PTZ00491850 major vault protein; Provisional 97.5
COG2268548 Uncharacterized protein conserved in bacteria [Fun 97.15
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 96.93
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 95.76
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 94.93
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 94.58
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 94.4
PRK11029334 FtsH protease regulator HflC; Provisional 92.97
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 91.63
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 88.69
PRK13665316 hypothetical protein; Provisional 86.89
PRK10930419 FtsH protease regulator HflK; Provisional 86.87
PTZ00121 2084 MAEBL; Provisional 80.87
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-62  Score=478.46  Aligned_cols=411  Identities=40%  Similarity=0.557  Sum_probs=323.2

Q ss_pred             CccccCccceeEeeeccccccccccccceecCceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhHHH
Q 010828            1 MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLK   79 (499)
Q Consensus         1 ~y~~~~p~ealVVtg~g~~rv~~gG~~fviPfq~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~   79 (499)
                      +|++|+||++++|||+|..+++.-.+.|+||||+|.+||++++++++.++ ++|++++|++|+++|+++|..+|++.++.
T Consensus         1 ~f~~~~~~~~l~itg~g~~~~~lv~~~wvf~wq~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~   80 (428)
T KOG2668|consen    1 MFKVAGASQYLAITGGGIEDIKLVKKSWVFPWQQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLL   80 (428)
T ss_pred             CCccCCccceEEeecccccCceecccceeeeeeeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHH
Confidence            69999999999999999977776667777777999999999999999888 99999999999999999998778665555


Q ss_pred             Hh-hhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCc
Q 010828           80 YA-KLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGH  158 (499)
Q Consensus        80 aa-~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~  158 (499)
                      ++ ..|+|  ++..+|..++..+|+||+|.++|+||+||||.||++|...|++.+..||..|||.|.|++|+|+.|..|.
T Consensus        81 ~A~e~flg--K~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~  158 (428)
T KOG2668|consen   81 YACEQFLG--KSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH  158 (428)
T ss_pred             HHHHHhcC--CCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence            54 57764  7789999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             chhcccchhhHHHHhhhhchhHHHhhhcccccchhccccchhhhcccccccceEEEeecCCCccceeeEeeeeeeecchh
Q 010828          159 EYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQR  238 (499)
Q Consensus       159 ~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~~~~~~A~~~~e~~Ia~a~~~~~~~~ae~~~~~~~~~a~~~~  238 (499)
                      .||.+||+...+++.|+|+|.+||+++++=|.  |+.+.+....|++.+|++|+                          
T Consensus       159 ~YlssLGka~taev~rdArIgvAEAk~eaGik--Ea~~~~~~~aak~~aetkI~--------------------------  210 (428)
T KOG2668|consen  159 EYLSSLGKATTAEVARDARIGVAEAKREAGIK--EATGLTEQNAAKIDAETKIA--------------------------  210 (428)
T ss_pred             HHHHHhhhHHHHHHHhhcccchHHhhhhcchh--hhhHHHHHhHHhhhhhhhHH--------------------------
Confidence            79999999999999999999999999866554  44455555555555555554                          


Q ss_pred             HHHHHHHhHHHHHhhhhhhhhhhhhhhcccccchhhhHHHHHHH----------HHhh--hhhhHHHHHHHhhhccchhh
Q 010828          239 EAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREV----------EKMN--AATSMEKLRAEFVSKANVEY  306 (499)
Q Consensus       239 e~~~A~a~a~~~~~~a~~~~~~~~a~a~a~~a~~~~~~e~q~ev----------~~~~--~~~~~~~l~~e~~~~A~a~~  306 (499)
                           .++++++++++.++.++.+.+++|+.+|+++.+..++.+          ++.+  ++++++.++.+.++.|.++ 
T Consensus       211 -----~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR-  284 (428)
T KOG2668|consen  211 -----SAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVR-  284 (428)
T ss_pred             -----HhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence                 444555555555555555555555555555444333222          1111  4455666667777777777 


Q ss_pred             hhhhhhhhHHHhhhhhHHHHHHhhhHHHHHHHHhhhhHHHHHHhhhhchhhhhhhhhhhhhhhhhhhhhhHHHHHHHhhC
Q 010828          307 EAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLG  386 (499)
Q Consensus       307 ~~~~~~AeA~~~~~~~~AeA~~~~~~~eAea~k~~AeA~~~~~~~~Aea~~~~~~AEAe~i~a~g~AeAe~~~~~aeA~~  386 (499)
                          .+|+|+.+..++-|||+......+|              ++||+-++..|+|||.+|.+.+.|||+-+++.++++.
T Consensus       285 ----~paeAe~~r~~klaEAnk~~~~~qa--------------qAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~  346 (428)
T KOG2668|consen  285 ----TPAEAEVERETKLAEANKELYNKQA--------------QAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQ  346 (428)
T ss_pred             ----ChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence                6677777777777777755544433              2345556677888899999999999999999999998


Q ss_pred             CchH-hhhHhhhcchhhHHHHHHhhHHHhhcCCCceeeeecCCCCCCCCCCCCcchhhHhhhHhhhcChhhHhhhhhcCC
Q 010828          387 GDYR-AVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGM  465 (499)
Q Consensus       387 ~~~~-a~~~~~~i~~~~lp~i~~~~a~p~~~i~~~i~i~~~~~~g~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~tGi  465 (499)
                      .++. ++.. ++|+.  ||.|+..++.||.+. ++|++|++   |+| .+ |++++|+.|.+|+..|||+++.|...+|.
T Consensus       347 ~y~~aa~l~-~lLea--lp~Ia~~ia~plakt-nkI~v~s~---g~~-~~-g~~k~t~dV~~l~~~LP~~v~~ltgv~~s  417 (428)
T KOG2668|consen  347 AYAQAAYLR-TLLEA--LPMIAAEIAAPLAKT-NKISVWSH---GGG-QM-GNAKVTGDVAGLYKMLPPSVDTLTGVDGS  417 (428)
T ss_pred             HhhhhHHHH-HHHHH--HHHHHHHhccchhhc-CeEEEEec---CCc-cc-cchhhHHHHHHHHHhCcHHHhhhcccccc
Confidence            8654 5543 55664  999999999999998 99999987   422 22 56789999999999999998877666666


Q ss_pred             CCCCccccc
Q 010828          466 TPPPFMGTL  474 (499)
Q Consensus       466 dl~~~l~~~  474 (499)
                      .+|.|++.+
T Consensus       418 q~p~~~~~~  426 (428)
T KOG2668|consen  418 QPPAWIGTL  426 (428)
T ss_pred             cCccccccc
Confidence            666666544

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 2e-21
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-12
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-04
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 89.5 bits (222), Expect = 2e-21
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 31  PGQYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQ 89
            G       +  +      +   +AE +   +  V  +     +++ L    +    K+ 
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLGKNV 61

Query: 90  NSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANI 149
               ++ +V   +EG  R +  ++T+E++++   +F + V E    ++ + G+ I +  I
Sbjct: 62  Q--DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

Query: 150 KQLVDVPGHEYFSYLGQKTQMEAANQA 176
           K + D     Y S LG+     +   +
Sbjct: 120 KDVYDKVD--YLSSLGK--TQTSGPSS 142
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.91
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.82
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.79
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.58
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.33
2zuo_A861 MVP, major vault protein; repeat domains, protein- 81.51
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
Probab=99.91  E-value=6.7e-26  Score=204.77  Aligned_cols=137  Identities=18%  Similarity=0.310  Sum_probs=125.5

Q ss_pred             CceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeec
Q 010828           32 GQYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLA  110 (499)
Q Consensus        32 fq~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~ii  110 (499)
                      ||++.++|+++++++++++ ++|+|+++|.||++++|+|. +||..+..++++|++  .+...+..++.+++.++||+++
T Consensus         4 i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~-dd~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~LR~vi   80 (143)
T 1win_A            4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLG--KNVQDIKNVVLQTLEGHLRSIL   80 (143)
T ss_dssp             CCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEEC-CCHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999888 89999999999999999996 578888888888764  3457789999999999999999


Q ss_pred             ccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchhhHHHHh
Q 010828          111 ASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAA  173 (499)
Q Consensus       111 g~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~~A~~~  173 (499)
                      |+|||+|++++|+.|+..|++.++.++.+|||+|.+++|++|++|++  |+++||+++.|+.+
T Consensus        81 G~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~--~~~am~~~~~Ae~~  141 (143)
T 1win_A           81 GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVD--YLSSLGKTQTSGPS  141 (143)
T ss_dssp             HHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTC--HHHHHCCCCCCCCC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHH--HHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999998  99999988877654
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 499
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 1e-05
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 8/140 (5%)

Query: 38  FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVRE 96
             +  +      +   +AE +   +  V  +    +     +   + +    Q+   ++ 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD---IKN 66

Query: 97  IVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVP 156
           +V   +EG  R +  ++T+E++++   +F + V E    ++ + G+ I +  IK +    
Sbjct: 67  VVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV--YD 124

Query: 157 GHEYFSYLGQKTQMEAANQA 176
             +Y S LG+     +   +
Sbjct: 125 KVDYLSSLGK--TQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2e-22  Score=179.75  Aligned_cols=133  Identities=17%  Similarity=0.298  Sum_probs=121.1

Q ss_pred             eeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeeccc
Q 010828           34 YCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAAS  112 (499)
Q Consensus        34 ~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~  112 (499)
                      .+.++||+.++++++++ ++|+|+++|+|+++++|+|. +++..+..++.+|++  .+.+.+...+.++++++||+++|+
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~-~~~~~~~~a~~~~l~--~~~~~~~~~i~~~~~~~lR~vig~   82 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLG--KNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSS--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEc-CcHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcc
Confidence            46689999999999888 79999999999999999997 567777778888875  345789999999999999999999


Q ss_pred             ccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchhhHHH
Q 010828          113 MTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQME  171 (499)
Q Consensus       113 mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~~A~  171 (499)
                      ||+++|+++|+.|.+.|.+.+..+|.+|||+|.++.|+||+||.+  |+++||+++.|.
T Consensus        83 ~~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~--~~~a~~~~q~A~  139 (143)
T d1wina_          83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVD--YLSSLGKTQTSG  139 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTC--HHHHHCCCCCCC
T ss_pred             ccHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHH--HHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999998  999999887664