Citrus Sinensis ID: 010840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccHHcHHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccHHHccEEEEEccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
MLVFFFCclnfsegltgitLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTMNthmgklklpvtcmpvfpgLSIFLILSLYYSTfvplcrritghprgasqLQRVGIGLAVSILSVIWAGIFERYRRNYAIshgyefsfltampdlSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintgRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Flexible Loop (DISEMBL)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVtgnpkkgqpnWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Low Complexity Region (SEG)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGlsiflilslyysTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered region (IsUnstruct)
*LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR*********************
Disordered Region (DISOPRED)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDN**************KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS****THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL******************TDDFRCLDKAALE**********WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK***********************
Disordered Region (DISEMBL)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered Region (DISPRO)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE*******************
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.929	0.743	0.804	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.909	0.796	0.411	1e-103
Q9LFB8	570	Peptide transporter PTR5	no	no	0.913	0.8	0.404	7e-96
P46032	585	Peptide transporter PTR2	no	no	0.907	0.774	0.410	1e-95
Q93Z20	590	Probable peptide/nitrate	no	no	0.867	0.733	0.415	3e-91
Q9SX20	596	Probable nitrite transpor	no	no	0.937	0.785	0.363	1e-78
Q84WG0	545	Probable peptide/nitrate	no	no	0.829	0.759	0.369	2e-78
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.959	0.823	0.350	1e-77
Q9M1I2	555	Probable peptide/nitrate	no	no	0.855	0.769	0.360	3e-77
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.935	0.753	0.355	7e-77

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/466 (80%), Positives = 422/466 (90%), Gaps = 2/466 (0%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCV
Sbjct: 149 GLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCV 208

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+A
Sbjct: 209 SSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVA 268

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SA
Sbjct: 269 MGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSA 328

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           I GS KI H++DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML
Sbjct: 329 INGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIML 388

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           +++LTE+LTLSVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 389 SLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITG 448

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           +P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQ
Sbjct: 449 NPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQ 508

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T + 
Sbjct: 509 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDS 568

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
                +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 569 DG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/472 (41%), Positives = 287/472 (60%), Gaps = 18/472 (3%)

Query: 11  FSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 70
           +  G+T +TL A++    P   N D       +C P  S Q    +  LY+   G  GI+
Sbjct: 106 YVSGMTLLTLSASVPGLKPGNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIK 157

Query: 71  PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130
           PCVSSFGADQFDE  ++ K     FFN+FY S+ VGA++A T++V+IQM  GWG  FG  
Sbjct: 158 PCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVP 217

Query: 131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK 190
            +AM I+   FF G+  YR + PGGSPLTR+ QV+VAAFRK        + + L+E    
Sbjct: 218 TVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADD 276

Query: 191 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIP 247
            S IKGS K+ HTD+ +  DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ 
Sbjct: 277 ESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVW 336

Query: 248 ACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVP 306
           A  I+   + ++  T+ V Q  TM+ HMGK  ++P   + +F  +S+     +Y    +P
Sbjct: 337 ATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIP 396

Query: 307 LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 366
           L R+ T + RG +QLQR+GIGL VSI ++I AG+ E  R +Y  +H    ++      +S
Sbjct: 397 LARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQKQIHMS 453

Query: 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426
            +W + QY LIG AEVF  +G LEF Y++APDAM+S+ SA +     LG + +++L +++
Sbjct: 454 IFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVV 513

Query: 427 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478
             +T   K G+P W+  N+N G  DY ++LLA LS +NF  +L+ + RYKY+
Sbjct: 514 MKIT--KKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  351 bits (900), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 274/475 (57%), Gaps = 19/475 (4%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           G+T +T+ A++    P    C       G    A + Q    +  LY+   G  GI+PCV
Sbjct: 110 GMTLLTISASVPGLTPT---CS------GETCHATAGQTAITFIALYLIALGTGGIKPCV 160

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFD+  +  K     FFN+FY  + VGA++A +++V+IQM  GWG   G   +A
Sbjct: 161 SSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVA 220

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           M I+ + FF G+  YR + PGGSPLTR+ QV+VA+ RK        E + LYE     S+
Sbjct: 221 MAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESS 279

Query: 194 IKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACT 250
           I GS K+ HT      DKAA+E + D       S WKLCTVTQVEE+K L+RL+PI A  
Sbjct: 280 IIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATG 339

Query: 251 IMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCR 309
           I+   + ++  T+ V Q  T++ HMG   K+P   + +F  LS+     +Y    VP  R
Sbjct: 340 IVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFAR 399

Query: 310 RITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 369
           + TGH RG +QLQR+GIGL +SI S++ AGI E  R NY  +H     +      ++ +W
Sbjct: 400 KYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNL---YNEETIPMTIFW 456

Query: 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV 429
            + QY L+G AEVF  +G LEF Y++APDAM+S+ SA +  A   G + ++ L +++  V
Sbjct: 457 QVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKV 516

Query: 430 TGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 484
           T +   G+P W+A+N+N G  DY +WLLA LS +NF  +L+ A  Y Y+    H 
Sbjct: 517 TRS--GGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  350 bits (899), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/468 (41%), Positives = 280/468 (59%), Gaps = 15/468 (3%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           G++ +TL A++    P +  C  I     S  PA   Q    +  LY+   G  GI+PCV
Sbjct: 126 GMSALTLSASVPALKPAE--C--IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCV 178

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFD+     +     FFN+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + 
Sbjct: 179 SSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVF 238

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MG++   FF GTPLYR + PGGSP+TR++QV+VA+FRK          + LYE   K+SA
Sbjct: 239 MGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSA 297

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACT 250
           I GS KI HTDD + LDKAA+  +E+  +    + W+LCTVTQVEE+K L+R+ PI A  
Sbjct: 298 IAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASG 357

Query: 251 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR 310
           I+ + +  +  T+ VQQ   MN  +G  +LP   +  F   S+ + + LY    VPL R+
Sbjct: 358 IIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARK 417

Query: 311 ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL 370
            TG  +G +++QR+GIGL VS+L +  A I E  R + A   G   S   A   +S  W 
Sbjct: 418 FTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES--GAPVPISVLWQ 475

Query: 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 430
           + QY ++G AEVF  +G LEF Y+++PDAM+S+ SA A L   LG + +S++ +++   T
Sbjct: 476 IPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT 535

Query: 431 GNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478
              + GQ  W++ N+N+G  DY +WLLA LS++N   + +SA RYK +
Sbjct: 536 --TRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  336 bits (861), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/455 (41%), Positives = 266/455 (58%), Gaps = 22/455 (4%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           G+  +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCV
Sbjct: 137 GMALLTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCV 192

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + 
Sbjct: 193 SSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVF 252

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MG+S   FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S 
Sbjct: 253 MGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSM 311

Query: 194 IKGSGKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC 249
           I GS KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A 
Sbjct: 312 IAGSRKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWAS 370

Query: 250 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCR 309
            I+ +V+ ++  TL VQQ  +MN  +   ++P     VF  L + + + +Y    VP  R
Sbjct: 371 GIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVR 430

Query: 310 RITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 369
           R TG P+G + LQR+GIGL +S+LS+  A I E  R   A           AM   S +W
Sbjct: 431 RFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-------FVAM---SIFW 480

Query: 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV 429
            + QY L+GIAEVF  +G +EF Y+E+PDAM+S+ SA A L   +G + +S++ +++   
Sbjct: 481 QIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYF 540

Query: 430 TGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 464
           T     G+  W+  ++N G  DY +WLL  L ++N
Sbjct: 541 TA--LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  294 bits (753), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 266/484 (54%), Gaps = 16/484 (3%)

Query: 6   FCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 65
           F  + +  G+T +T+ A +    P     + +      C  A + Q+  LY  L +   G
Sbjct: 100 FASIIYQIGMTLLTISAIIPTLRPPPCKGEEV------CVVADTAQLSILYVALLLGALG 153

Query: 66  AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 125
           + GIRPCV +FGADQFDE   +  T    +FN++Y  +    ++A T++V+IQ   GWG 
Sbjct: 154 SGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGL 213

Query: 126 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 185
             G   +AM +S + F  G  LYRH +P GSP TR+ QV VAAFRKR     S   + LY
Sbjct: 214 GLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSL-LY 272

Query: 186 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN----PSPWKLCTVTQVEEVKTLV 241
                 + I   GK+ HT     LDKAA+  +ED +     P+ W+L TV +VEE+K+++
Sbjct: 273 FNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVI 332

Query: 242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLY 300
           R+ PI A  I+L     +  T S+QQA TMN H+    ++P   M VF  +++   +  Y
Sbjct: 333 RMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFY 392

Query: 301 YSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 360
              FV + R+ TG  RG + L R+GIG  +SI++ + AG  E  R++ AI HG      T
Sbjct: 393 DRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHT 452

Query: 361 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 420
            +P +S  WL+ QY L G+AE F  +G LEF Y++AP++M+S  +A   +A  +G + ++
Sbjct: 453 IVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVST 511

Query: 421 ILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
           +L +++   +  P     NWL   N+N GR +Y YWL+ VL  +N   +L+ A  Y Y+ 
Sbjct: 512 LLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKP 569

Query: 480 EQKH 483
            Q H
Sbjct: 570 VQVH 573

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  293 bits (751), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 52/466 (11%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPC 72
           G+  +TL A++    P        ++ +GS C PA   Q   L++ LY+   G  GI+PC
Sbjct: 127 GMVALTLSASVPGLKP--------AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPC 178

Query: 73  VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132
           VSSFGADQFD+     +     FFN+FY ++ +GA V+ T++V+IQ  +GW   F    +
Sbjct: 179 VSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTV 238

Query: 133 AMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS 192
            MG++ M FF GTPLYR + P GSP+T V QVLVAA+RK +            +VP   +
Sbjct: 239 FMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSN-----------LKVPEDST 287

Query: 193 AIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM 252
                                    E   N +PWKLCTVTQVEEVK L+RLVPI A  I+
Sbjct: 288 ------------------------DEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGII 323

Query: 253 LNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRIT 312
            +V+ ++  TL VQQ   M   +G  ++P   + +F   S+ + + +Y    VPL RR T
Sbjct: 324 FSVLHSQIYTLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFT 383

Query: 313 GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLI 372
           G  +G ++LQR+GIGL VS+LS+ +A I E  R   A     +      +  L+ +W + 
Sbjct: 384 GLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLA--RDLDLVESGDIVPLNIFWQIP 441

Query: 373 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN 432
           QY L+G A VF  VG +EF YE++PD+M+S+ SA+A L   LG + +S++ +++  ++  
Sbjct: 442 QYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-- 499

Query: 433 PKKGQPNWL-AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477
              G+  W+ + NIN G  DY +WLL  L  +N   F++ + +Y +
Sbjct: 500 ---GKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTH 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 271/493 (54%), Gaps = 14/493 (2%)

Query: 2   LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI 61
           + F   C  +  G+  +TL  T+    P + +   +     +CE A   Q+   +  LY 
Sbjct: 100 ITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVE----NCEKASVLQLAVFFGALYT 155

Query: 62  TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 121
              G  G +P +S+ GADQFD      KT    FFN++  S+  G + A T++VY+Q   
Sbjct: 156 LAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNV 215

Query: 122 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 181
           GW   +G   + + IS  +F +GTP YRH+LP GSP T++A+V+VA+FRK +A   + ++
Sbjct: 216 GWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDI 274

Query: 182 IGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 241
              +E+P      KG+  I  T   R LD+A+L+   +      W LCT T+VEE K ++
Sbjct: 275 TSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----HKWNLCTTTEVEETKQML 330

Query: 242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLY 300
           R++P+   T + +++L +  TL V+Q  T++  + G   +P   +  F  LS+ + + LY
Sbjct: 331 RMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLY 390

Query: 301 YSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 360
              FV + R+ TG+PRG + LQR+GIGL   IL +I A + ERYR   A  HG       
Sbjct: 391 DRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGV 450

Query: 361 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 420
            +P L+ + LL Q+ L+G+A+ F  V  LEF Y++AP++MKS+G++Y+  +  +G F +S
Sbjct: 451 KLP-LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSS 509

Query: 421 ILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 480
            L S +  +T   KK    W+  N+N  R DY Y   AVL+++NF  FL     Y YR+E
Sbjct: 510 FLLSTVSEIT---KKRGRGWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAE 566

Query: 481 QKHGNDYEVMENK 493
                D + +E K
Sbjct: 567 VTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 247/441 (56%), Gaps = 14/441 (3%)

Query: 56  YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 115
           +  LY+   G  G +PCV +F ADQF E + + K     FFN++Y+++ + + +A   ++
Sbjct: 118 FMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALI 177

Query: 116 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA 175
           +IQ    W   F  +A ++ I+ ++F IG P YR ++P GSP TRVAQV+VAA +K   +
Sbjct: 178 FIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLS 237

Query: 176 FSSSELIGL-YEVPGKHSAIKGSGK----IAHTDDFRCLDKAAL--ELKEDVINPSPWKL 228
            S+    GL YE   +H     +      +A T+ FR LDKA +  E+  +  N +PW+L
Sbjct: 238 -STRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNK-NRNPWRL 295

Query: 229 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPV 287
           CTV QVEEVK ++RL+PI    IM    LT+  T  ++Q   M+  +G    +P      
Sbjct: 296 CTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQS 355

Query: 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 347
             G++I +++ LY   FVP+ R+IT H  G + LQR+G+GL V+  +++  G+ E  R  
Sbjct: 356 IVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLK 415

Query: 348 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 407
            A  HG   S    +P +S+ WLL QY L+GI +VF IVG+ E  Y++ P+ M+SIG+A 
Sbjct: 416 VARDHGLIDSPKEVVP-MSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAI 474

Query: 408 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA 467
                G+G F ++    II +V    K     WL  N+N    DY YW++A L+ ++ C 
Sbjct: 475 FISVVGVGSFVST---GIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCF 531

Query: 468 FLYSAYRYKYRSEQKHGNDYE 488
           +L+ A  + Y+  Q   +D E
Sbjct: 532 YLFIANHFLYKKLQDKDDDVE 552

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  288 bits (737), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 267/495 (53%), Gaps = 28/495 (5%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GL  ITL A+     P   N    SQ   SC      Q+  L   L     G+ GIRPC 
Sbjct: 136 GLITITLTASFPQLHPASCN----SQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCS 191

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
             FG DQFD+R+++    +  FFN++Y++ TV  I+  T+VVYIQ +  W   F      
Sbjct: 192 IPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGL 251

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE--LIGLYEVPGKH 191
           M ++ ++FF G   Y +  P GS  + +AQV+VAA +KR     + +   +  Y+   K 
Sbjct: 252 MALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKS 311

Query: 192 SAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP----WKLCTVTQVEEVKTLVRLVPIP 247
           S +    K+  ++ FRCLDKAA+ ++ D+    P    W+LC+V +VEEVK L+R+VPI 
Sbjct: 312 SVLS---KLHRSNQFRCLDKAAVVIEGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIW 368

Query: 248 ACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVP 306
           +  I+    +T   T +V QA  M+ ++G K ++P   + V   L+I + L  Y   FVP
Sbjct: 369 SAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVP 428

Query: 307 LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 366
             RRITGH  G + LQR+G G+  +I S+I AGI ER RR  +I+ G      T M  +S
Sbjct: 429 FMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDP----TGMTPMS 484

Query: 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426
            +WL  Q  L+G+ E F I+G +EF   + P+ M+SI ++  +L+     + +S L +++
Sbjct: 485 VFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVV 544

Query: 427 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR-------- 478
              +G   +  P+WL +N+N G+ DY Y+L+AVL V+N   F Y A  Y+Y+        
Sbjct: 545 HKFSGGHDR--PDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDF 602

Query: 479 SEQKHGNDYEVMENK 493
            E K  +D E+   K
Sbjct: 603 EEDKSSDDVEMTSKK 617

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
224053581	638	predicted protein [Populus trichocarpa]	0.959	0.750	0.860	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.961	0.75	0.827	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.963	0.755	0.817	0.0
147866216	626	hypothetical protein VITISV_008303 [Viti	0.951	0.758	0.833	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.941	0.744	0.834	0.0
357501519	638	Peptide transporter-like protein [Medica	0.945	0.739	0.793	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.917	0.748	0.822	0.0
297811451	625	proton-dependent oligopeptide transport	0.945	0.755	0.797	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.929	0.743	0.804	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.893	0.735	0.768	0.0

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/480 (86%), Positives = 447/480 (93%), Gaps = 1/480 (0%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCATM +FMP+Q  CD++S LLG+CEPAKSWQMLYL TVLY+TGFGAAGIRPCV
Sbjct: 153 GLTGITLCATMNIFMPDQGQCDQLSLLLGNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCV 212

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDER ++YK+HLDRFFNFFYLSVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIA
Sbjct: 213 SSFGADQFDERGENYKSHLDRFFNFFYLSVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIA 272

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MG+SNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF+KR A+FSSSELIGLYEVPGK SA
Sbjct: 273 MGMSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFQKRKASFSSSELIGLYEVPGKRSA 332

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGSGKIAHTDDFRCLDKAAL+LKED ++PSPW+LCTVTQVEEVK L++LVPIPACTIML
Sbjct: 333 IKGSGKIAHTDDFRCLDKAALQLKEDGVDPSPWRLCTVTQVEEVKILIKLVPIPACTIML 392

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           N+ILTE+LTLSVQQAYT+NTH+G LKLPVT MPVFP LSIFLILSLYYS FVP+ RRITG
Sbjct: 393 NLILTEYLTLSVQQAYTLNTHLGHLKLPVTSMPVFPCLSIFLILSLYYSVFVPIFRRITG 452

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HPRGASQLQRVGIGLA SILSV WA IFERYRR YAI HGYEFSFLT MP+LSAYWLLIQ
Sbjct: 453 HPRGASQLQRVGIGLAFSILSVAWAAIFERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQ 512

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG+GCFAASILNSI+KSVTGNP
Sbjct: 513 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGIGCFAASILNSIVKSVTGNP 572

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 493
            K Q +WL+QNINTGRF+Y YWLL VLS INFCAFLYSA RYKYR+EQK G   EV+ NK
Sbjct: 573 DKRQQSWLSQNINTGRFEYFYWLLTVLSAINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/480 (82%), Positives = 437/480 (91%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCV
Sbjct: 153 GLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCV 212

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIA
Sbjct: 213 SSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIA 272

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SA
Sbjct: 273 MGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSA 332

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KI HTDDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L
Sbjct: 333 IKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIIL 392

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           ++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 393 SLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITG 452

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQ
Sbjct: 453 HPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQ 512

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ 
Sbjct: 513 YCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDR 572

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 493
           ++  P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 573 QQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/483 (81%), Positives = 442/483 (91%), Gaps = 2/483 (0%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GL GITLCAT+  F+PNQ  CD++S LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCV
Sbjct: 155 GLVGITLCATISTFVPNQAKCDQLSLLLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCV 214

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDE+SKDYK+HLDRFFNFFYLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIA
Sbjct: 215 SSFGADQFDEKSKDYKSHLDRFFNFFYLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIA 274

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MG SN++FF+GTPLYRHRLPGGSPLTRVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SA
Sbjct: 275 MGFSNVVFFLGTPLYRHRLPGGSPLTRVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSA 334

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGSGKI HTDDFRCLDKAAL+LKED  NPSPWKLCTVTQVEEVK L++L+PIPACTIML
Sbjct: 335 IKGSGKILHTDDFRCLDKAALQLKEDGGNPSPWKLCTVTQVEEVKILLKLIPIPACTIML 394

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           N++LTE+LTLSVQQAYTMNTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVPL RRITG
Sbjct: 395 NLVLTEYLTLSVQQAYTMNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITG 454

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLA+SILSV WAG FERYRRN+AI  GYE SFL+ MP+LSAYWLLIQ
Sbjct: 455 HPHGASQLQRVGIGLAISILSVAWAGAFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQ 514

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P
Sbjct: 515 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSP 574

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 493
               P+WL+QNINTGRFDY YWLL V+S+INFC FLYSA++YKYR + + G    +MEN 
Sbjct: 575 NGRNPSWLSQNINTGRFDYFYWLLTVMSIINFCIFLYSAHKYKYRKDHEVGEG--IMENG 632

Query: 494 LYD 496
           ++D
Sbjct: 633 MHD 635

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/475 (83%), Positives = 435/475 (91%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCV
Sbjct: 146 GLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCV 205

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIA
Sbjct: 206 SSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIA 265

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SA
Sbjct: 266 MGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSA 325

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KI HTDDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L
Sbjct: 326 IKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIIL 385

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           ++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 386 SLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITG 445

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQ
Sbjct: 446 HPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQ 505

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ 
Sbjct: 506 YCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDR 565

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE 488
           ++  P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E
Sbjct: 566 QQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/470 (83%), Positives = 429/470 (91%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCAT+  F+PNQ+ CD+ S LLG+CE AK WQM YLYT LYIT FGAAGIRPCV
Sbjct: 149 GLTGITLCATISKFVPNQEECDQFSLLLGNCEAAKPWQMTYLYTALYITAFGAAGIRPCV 208

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERSK+YK HLDRFFN FYLSVT+GAIVAFT+VVY+QM+ GWGSAFG+LAIA
Sbjct: 209 SSFGADQFDERSKNYKAHLDRFFNIFYLSVTIGAIVAFTVVVYVQMKFGWGSAFGSLAIA 268

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISNM+FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+A+F SSE IGLYEVPG+ SA
Sbjct: 269 MGISNMVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNASFGSSEFIGLYEVPGRQSA 328

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KI+HTDDFR LDKAAL+LKED  NPSPW+LCTVTQVEEVK L++L+PIPACTIML
Sbjct: 329 IKGSRKISHTDDFRFLDKAALQLKEDGANPSPWRLCTVTQVEEVKILMKLIPIPACTIML 388

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           NV+LTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLS+FLILSLYYS FVP+ RRITG
Sbjct: 389 NVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCMPVFPGLSVFLILSLYYSIFVPVFRRITG 448

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLAVSILSV WA IFERYRRNYAI HGY  SFLTAMP+LSAYWLLIQ
Sbjct: 449 HPHGASQLQRVGIGLAVSILSVAWAAIFERYRRNYAIKHGYLASFLTAMPNLSAYWLLIQ 508

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+I+N+IIKS TGN 
Sbjct: 509 YCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFVATIINNIIKSATGNL 568

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 483
            KGQP+WL+QNINTGRFDY YWLL  LS+INF  F+YSA+RYKYR  Q H
Sbjct: 569 DKGQPSWLSQNINTGRFDYFYWLLTALSIINFAIFVYSAHRYKYREHQVH 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/479 (79%), Positives = 430/479 (89%), Gaps = 7/479 (1%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGIT+CATM +F+PNQ+NCD++S LLG+CEPAK WQM YLYTVLYIT FGAAGIRPCV
Sbjct: 148 GLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCV 207

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERSK+YK+HLDRFFN FYLSVT+GAI+AFT VVY+QM+ GWGSAFG+LAIA
Sbjct: 208 SSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIIAFTAVVYVQMKLGWGSAFGSLAIA 267

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MG+SNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA+RKR  +F +SE++GLYEVPG+ SA
Sbjct: 268 MGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSA 327

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KIAHTDDFR LDKAAL+LK+D  NPS W LCTVTQVEEVK L++L+PIPACTIML
Sbjct: 328 IKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIML 387

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           NVILTEFLTLSVQQAYT+NTH+GKLKLPVTCMPVFPGLS+FLIL+LYY TFVPL +RITG
Sbjct: 388 NVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITG 447

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQR+GIGL VSILSV WA IFE+YRRNYAI + +E SFLT MP+LSAYWLLIQ
Sbjct: 448 HPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEFEASFLTPMPNLSAYWLLIQ 507

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+ +NS++KS TGN 
Sbjct: 508 YCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSATGNS 567

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ-------KHGN 485
            K Q +WL+QNINTG+FDY YW+L  LS++NFC FLYSA+RYKYR++        KH N
Sbjct: 568 DKRQESWLSQNINTGKFDYFYWVLTALSLVNFCIFLYSAHRYKYRTQHVYEMESIKHDN 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/468 (82%), Positives = 423/468 (90%), Gaps = 10/468 (2%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCV
Sbjct: 153 GLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCV 212

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIA
Sbjct: 213 SSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIA 272

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SA
Sbjct: 273 MGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSA 332

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KI HTDDFR          +D   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L
Sbjct: 333 IKGSRKIVHTDDFR----------KDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIIL 382

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           ++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 383 SLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITG 442

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQ
Sbjct: 443 HPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQ 502

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ 
Sbjct: 503 YCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDR 562

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 481
           ++  P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR+ Q
Sbjct: 563 QQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRAFQ 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/474 (79%), Positives = 425/474 (89%), Gaps = 2/474 (0%)

Query: 6   FCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 65
           F  +     L GITL A++K+F+P+Q NC ++S LLG+CEPAKSWQMLYLYTVLYITGFG
Sbjct: 142 FTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNCEPAKSWQMLYLYTVLYITGFG 201

Query: 66  AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 125
           AAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG 
Sbjct: 202 AAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGM 261

Query: 126 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 185
           AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLY
Sbjct: 262 AFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLY 321

Query: 186 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 245
           EVPG  SAI GS KI H+DDF  LDKAAL+LKED + PSPWKLCTVTQVEEVK L+RL+P
Sbjct: 322 EVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPSPWKLCTVTQVEEVKILIRLIP 381

Query: 246 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFV 305
           IPACTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FV
Sbjct: 382 IPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFV 441

Query: 306 PLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365
           P+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI HG+EF+FLT MPDL
Sbjct: 442 PITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQHGFEFNFLTQMPDL 501

Query: 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425
           +AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I
Sbjct: 502 TAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNI 561

Query: 426 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
           +K+ T +      +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 562 VKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 613

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/466 (80%), Positives = 422/466 (90%), Gaps = 2/466 (0%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCV
Sbjct: 149 GLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCV 208

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+A
Sbjct: 209 SSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVA 268

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SA
Sbjct: 269 MGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSA 328

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           I GS KI H++DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML
Sbjct: 329 INGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIML 388

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           +++LTE+LTLSVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 389 SLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITG 448

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           +P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQ
Sbjct: 449 NPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQ 508

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T + 
Sbjct: 509 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDS 568

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
                +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 569 DG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/480 (76%), Positives = 407/480 (84%), Gaps = 34/480 (7%)

Query: 14  GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
           GLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCV
Sbjct: 153 GLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCV 212

Query: 74  SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
           SSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIA
Sbjct: 213 SSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIA 272

Query: 134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
           MGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SA
Sbjct: 273 MGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSA 332

Query: 194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
           IKGS KI HTDDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L
Sbjct: 333 IKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIIL 392

Query: 254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313
           ++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG
Sbjct: 393 SLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITG 452

Query: 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
           HP GASQLQRVGIGLAVSILSV WAG                                  
Sbjct: 453 HPHGASQLQRVGIGLAVSILSVAWAG---------------------------------- 478

Query: 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433
           YCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ 
Sbjct: 479 YCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDR 538

Query: 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 493
           ++  P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 539 QQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.929	0.743	0.746	6.9e-189
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.909	0.796	0.398	1.9e-90
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.907	0.774	0.388	1.7e-84
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.869	0.761	0.406	2.1e-84
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.867	0.733	0.404	7.4e-82
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.937	0.785	0.359	2.8e-73
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.498	0.456	0.361	6e-72
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.959	0.823	0.334	2.3e-71
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.941	0.802	0.334	2.6e-70
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.911	0.777	0.352	2.4e-69

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1831 (649.6 bits), Expect = 6.9e-189, P = 6.9e-189
 Identities = 348/466 (74%), Positives = 395/466 (84%)

Query:    14 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
             GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCV
Sbjct:   149 GLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCV 208

Query:    74 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
             SSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+A
Sbjct:   209 SSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVA 268

Query:   134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
             MGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SA
Sbjct:   269 MGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSA 328

Query:   194 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 253
             I GS KI H++DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML
Sbjct:   329 INGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIML 388

Query:   254 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITG 313
             +++LTE+LTLSVQQAYT+NTH+  LKLPVTCMPVFPG             FVP+ RRITG
Sbjct:   389 SLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITG 448

Query:   314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 373
             +P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQ
Sbjct:   449 NPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQ 508

Query:   374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNP 433
             YCLIGIAEVFCIVGLLEFLYEEAPDAMKSI                 ILN+I+K+ T + 
Sbjct:   509 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRD- 567

Query:   434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
               G+ +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct:   568 SDGK-SWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 188/472 (39%), Positives = 274/472 (58%)

Query:    11 FSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 70
             +  G+T +TL A++    P   N D       +C P  S Q    +  LY+   G  GI+
Sbjct:   106 YVSGMTLLTLSASVPGLKPGNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIK 157

Query:    71 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130
             PCVSSFGADQFDE  ++ K     FFN+FY S+ VGA++A T++V+IQM  GWG  FG  
Sbjct:   158 PCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVP 217

Query:   131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK 190
              +AM I+   FF G+  YR + PGGSPLTR+ QV+VAAFRK        + + L+E    
Sbjct:   218 TVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADD 276

Query:   191 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIP 247
              S IKGS K+ HTD+ +  DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ 
Sbjct:   277 ESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVW 336

Query:   248 ACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXXXTFVP 306
             A  I+   + ++  T+ V Q  TM+ HMGK  ++P   + +F                +P
Sbjct:   337 ATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIP 396

Query:   307 LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 366
             L R+ T + RG +QLQR+GIGL VSI ++I AG+ E  R +Y  +H    ++      +S
Sbjct:   397 LARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQKQIHMS 453

Query:   367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSII 426
              +W + QY LIG AEVF  +G LEF Y++APDAM+S+                 +L +++
Sbjct:   454 IFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVV 513

Query:   427 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478
               +T   K G+P W+  N+N G  DY ++LLA LS +NF  +L+ + RYKY+
Sbjct:   514 MKIT--KKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 182/468 (38%), Positives = 266/468 (56%)

Query:    14 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
             G++ +TL A++    P +  C  I     S  PA   Q    +  LY+   G  GI+PCV
Sbjct:   126 GMSALTLSASVPALKPAE--C--IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCV 178

Query:    74 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
             SSFGADQFD+     +     FFN+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + 
Sbjct:   179 SSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVF 238

Query:   134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
             MG++   FF GTPLYR + PGGSP+TR++QV+VA+FRK          + LYE   K+SA
Sbjct:   239 MGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSA 297

Query:   194 IKGSGKIAHTDDFRCLDKAALELKEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACT 250
             I GS KI HTDD + LDKAA+  +E+  +    + W+LCTVTQVEE+K L+R+ PI A  
Sbjct:   298 IAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASG 357

Query:   251 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRR 310
             I+ + +  +  T+ VQQ   MN  +G  +LP   +  F                VPL R+
Sbjct:   358 IIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARK 417

Query:   311 ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL 370
              TG  +G +++QR+GIGL VS+L +  A I E  R + A   G   S    +P +S  W 
Sbjct:   418 FTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESG-APVP-ISVLWQ 475

Query:   371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVT 430
             + QY ++G AEVF  +G LEF Y+++PDAM+S+                 ++ +++   T
Sbjct:   476 IPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT 535

Query:   431 GNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478
                + GQ  W++ N+N+G  DY +WLLA LS++N   + +SA RYK +
Sbjct:   536 --TRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 181/445 (40%), Positives = 255/445 (57%)

Query:    43 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 102
             +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FFN+FY  
Sbjct:   131 TCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFV 189

Query:   103 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 162
             + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGSPLTR+ 
Sbjct:   190 INVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRML 249

Query:   163 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED--- 219
             QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E + D   
Sbjct:   250 QVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query:   220 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KL 278
                 S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ HMG   
Sbjct:   309 AAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNF 368

Query:   279 KLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 338
             K+P   + +F                VP  R+ TGH RG +QLQR+GIGL +SI S++ A
Sbjct:   369 KIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSA 428

Query:   339 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398
             GI E  R NY  +H   ++  T +P ++ +W + QY L+G AEVF  +G LEF Y++APD
Sbjct:   429 GILEVARLNYVQTHNL-YNEET-IP-MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPD 485

Query:   399 AMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLA 458
             AM+S+                  L +++  VT +   G+P W+A+N+N G  DY +WLLA
Sbjct:   486 AMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSG--GRPGWIAKNLNNGHLDYFFWLLA 543

Query:   459 VLSVINFCAFLYSAYRYKYRSEQKH 483
              LS +NF  +L+ A  Y Y+    H
Sbjct:   544 GLSFLNFLVYLWIAKWYTYKKTTGH 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 184/455 (40%), Positives = 257/455 (56%)

Query:    14 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
             G+  +TL A++ V  P    C  ++  L  C PA + Q    +T LY+   G  GI+PCV
Sbjct:   137 GMALLTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCV 192

Query:    74 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
             SSFGADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + 
Sbjct:   193 SSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVF 252

Query:   134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 193
             MG+S   FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S 
Sbjct:   253 MGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSM 311

Query:   194 IKGSGKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC 249
             I GS KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A 
Sbjct:   312 IAGSRKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWAS 370

Query:   250 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCR 309
              I+ +V+ ++  TL VQQ  +MN  +   ++P     VF                VP  R
Sbjct:   371 GIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVR 430

Query:   310 RITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 369
             R TG P+G + LQR+GIGL +S+LS+  A I E  R   A     +F    AM   S +W
Sbjct:   431 RFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA----QDF---VAM---SIFW 480

Query:   370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSV 429
              + QY L+GIAEVF  +G +EF Y+E+PDAM+S+                 ++ +++   
Sbjct:   481 QIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYF 540

Query:   430 TGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 464
             T     G+  W+  ++N G  DY +WLL  L ++N
Sbjct:   541 TA--LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 174/484 (35%), Positives = 253/484 (52%)

Query:     6 FCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 65
             F  + +  G+T +T+ A +    P     + +      C  A + Q+  LY  L +   G
Sbjct:   100 FASIIYQIGMTLLTISAIIPTLRPPPCKGEEV------CVVADTAQLSILYVALLLGALG 153

Query:    66 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 125
             + GIRPCV +FGADQFDE   +  T    +FN++Y  +    ++A T++V+IQ   GWG 
Sbjct:   154 SGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGL 213

Query:   126 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 185
               G   +AM +S + F  G  LYRH +P GSP TR+ QV VAAFRKR     S   + LY
Sbjct:   214 GLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSL-LY 272

Query:   186 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS--P--WKLCTVTQVEEVKTLV 241
                   + I   GK+ HT     LDKAA+  +ED + P   P  W+L TV +VEE+K+++
Sbjct:   273 FNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVI 332

Query:   242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXX 300
             R+ PI A  I+L     +  T S+QQA TMN H+    ++P   M VF            
Sbjct:   333 RMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFY 392

Query:   301 XXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 360
                FV + R+ TG  RG + L R+GIG  +SI++ + AG  E  R++ AI HG      T
Sbjct:   393 DRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHT 452

Query:   361 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXX 420
              +P +S  WL+ QY L G+AE F  +G LEF Y++AP++M+S                  
Sbjct:   453 IVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVST 511

Query:   421 ILNSIIKSVTGNPKKGQPNWLAQN-INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479
             +L +++   +  P  G  NWL  N +N GR +Y YWL+ VL  +N   +L+ A  Y Y+ 
Sbjct:   512 LLVTLVHKFSAKPD-GS-NWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKP 569

Query:   480 EQKH 483
              Q H
Sbjct:   570 VQVH 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 93/257 (36%), Positives = 140/257 (54%)

Query:   222 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 281
             N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +G  ++P
Sbjct:   293 NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIP 352

Query:   282 VTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 341
                + +F                VPL RR TG  +G ++LQR+GIGL VS+LS+ +A I 
Sbjct:   353 PATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIV 412

Query:   342 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401
             E  R   A       S    +P L+ +W + QY L+G A VF  VG +EF YE++PD+M+
Sbjct:   413 ETVRLQLARDLDLVESG-DIVP-LNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMR 470

Query:   402 SIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWLLAVL 460
             S+                 ++ +++  ++G     +  W+ + NIN G  DY +WLL  L
Sbjct:   471 SLCSAWALLTTTLGNYLSSLIITLVAYLSG-----KDCWIPSDNINNGHLDYFFWLLVSL 525

Query:   461 SVINFCAFLYSAYRYKY 477
               +N   F++ + +Y +
Sbjct:   526 GSVNIPVFVFFSVKYTH 542

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 165/493 (33%), Positives = 256/493 (51%)

Query:     2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI 61
             + F   C  +  G+  +TL  T+    P +  C   +  + +CE A   Q+   +  LY 
Sbjct:   100 ITFVISCAIYFSGMMVLTLSVTIPGIKPPE--CSTTN--VENCEKASVLQLAVFFGALYT 155

Query:    62 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 121
                G  G +P +S+ GADQFD      KT    FFN++  S+  G + A T++VY+Q   
Sbjct:   156 LAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNV 215

Query:   122 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 181
             GW   +G   + + IS  +F +GTP YRH+LP GSP T++A+V+VA+FRK +A  +  ++
Sbjct:   216 GWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DI 274

Query:   182 IGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 241
                +E+P      KG+  I  T   R LD+A+L+   +      W LCT T+VEE K ++
Sbjct:   275 TSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----HKWNLCTTTEVEETKQML 330

Query:   242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXX 300
             R++P+   T + +++L +  TL V+Q  T++  + G   +P   +  F            
Sbjct:   331 RMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLY 390

Query:   301 XXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 360
                FV + R+ TG+PRG + LQR+GIGL   IL +I A + ERYR   A  HG       
Sbjct:   391 DRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGV 450

Query:   361 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXX 420
              +P L+ + LL Q+ L+G+A+ F  V  LEF Y++AP++MKS+                 
Sbjct:   451 KLP-LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSS 509

Query:   421 ILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 480
              L S +  +T   K+G+  W+  N+N  R DY Y   AVL+++NF  FL     Y YR+E
Sbjct:   510 FLLSTVSEIT--KKRGR-GWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAE 566

Query:   481 QKHGNDYEVMENK 493
                  D + +E K
Sbjct:   567 VTDSVDVKEVEMK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 163/487 (33%), Positives = 255/487 (52%)

Query:    15 LTGITLCATMKVFMPN--QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 72
             L G+ L  T+ V +P      C   +  + +CE A   Q+   +  LY    G  G +P 
Sbjct:   110 LLGMALL-TLSVSLPGLKPPKCSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPN 166

Query:    73 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132
             +S+ GADQFDE     K H   FFN++  S+  G   A T++VY+Q   GW   +G   +
Sbjct:   167 ISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTL 226

Query:   133 AMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS 192
              +  S  +F +GT LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    
Sbjct:   227 GLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEY 285

Query:   193 AIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM 252
             A K +  I  T   R L++A+L+      +   W+LCT+T+VEE K +++++P+   T +
Sbjct:   286 ASKRAFPIHSTSSLRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFV 341

Query:   253 LNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRI 311
              +++L + +TL ++Q  T++  +     +P   +  F               FV   R++
Sbjct:   342 PSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKL 401

Query:   312 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWL 370
             TG+PRG + LQR+GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + L
Sbjct:   402 TGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTL 459

Query:   371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVT 430
             L QY L+G+A+ F  +  LEF Y++AP++MKS+                 IL S +  +T
Sbjct:   460 LPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQIT 519

Query:   431 GNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVM 490
                K+G+  W+  N+N  R D  Y   AVL+++NF  FL     Y+YR++     + E  
Sbjct:   520 --KKQGR-GWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQK 576

Query:   491 ENKLYDS 497
             E  + D+
Sbjct:   577 EPNMVDN 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 170/482 (35%), Positives = 256/482 (53%)

Query:    14 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 73
             GL  +T+ A     MP   +CD       +CE     +   L+  LY+   G  GI+  +
Sbjct:   110 GLIILTIQARTPSLMP--PSCDS-----PTCEEVSGSKAAMLFVGLYLVALGVGGIKGSL 162

Query:    74 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133
             +S GA+QFDE +   +     FFN+F   +  GA+VA T VV+++   GW   FG   IA
Sbjct:   163 ASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIA 222

Query:   134 MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV-PGKHS 192
             + +S ++F  G+  YR+++P GSPLT + +VL+AA  K  ++ SSS  +    V P  H 
Sbjct:   223 IFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHC 282

Query:   193 AIKGS------GKIAHTDDFRCLD-KAALELKEDVINPS----P-WKL--CTVTQVEEVK 238
               KG       G++        L  +A L     V+N +    P  +L  CTV QVE+VK
Sbjct:   283 VSKGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVK 342

Query:   239 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXX 298
              +++++PI ACTIMLN  L +  T SVQQA +MNT +G LK+P   +P+FP         
Sbjct:   343 IVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAP 402

Query:   299 XXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF 358
                   +P  R+ T    G + LQR+G+GL +SIL++  A + E  R+  A   G   S 
Sbjct:   403 IYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSK 462

Query:   359 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXX 418
              T +P ++  W+ +QY  +G A++F + GLLE+ + EAP +M+S+               
Sbjct:   463 ET-LP-VTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYL 520

Query:   419 XXILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477
               ++ SI+ S+TG+   G   WL  ++IN  + DY YWL+ VLS  NF  +L+ A RYKY
Sbjct:   521 SSVIVSIVNSITGS--SGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKY 578

Query:   478 RS 479
             RS
Sbjct:   579 RS 580

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.8047	0.9298	0.7435	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
pfam00854	372	pfam00854, PTR2, POT family	4e-58
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	7e-11
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-08
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  196 bits (500), Expect = 4e-58
 Identities = 101/364 (27%), Positives = 167/364 (45%), Gaps = 26/364 (7%)

Query: 51  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 110
           Q+   Y  LY+   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A
Sbjct: 31  QVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIA 87

Query: 111 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAA 168
             +  Y+Q   G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA
Sbjct: 88  TIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAA 147

Query: 169 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL 228
            + R           LY    K++    S    HT        A + +            
Sbjct: 148 GKNRKLQLPKDS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LF 197

Query: 229 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPV 287
                V  ++ ++ ++PI A  I+ + + T+  TL V+Q  TM+  +  L ++P      
Sbjct: 198 DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQS 257

Query: 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 347
           F  L++ ++L +      PL R      RG +  QR G+G+ + I++   A I E  R  
Sbjct: 258 FNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPR 313

Query: 348 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 407
           YA + G      T    L   W L +  + G+       G LEF  +  P +M S+ +  
Sbjct: 314 YAAALGLTSPGWTVP--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLL 367

Query: 408 AALA 411
           +A A
Sbjct: 368 SAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 59  LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL----- 113
           L      A G         A   D+  +   +   RFF+FFY ++  G++ +  +     
Sbjct: 89  LVGLALIALGTGGIKPCVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILR 148

Query: 114 --VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK 171
             V     +  +  AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +K
Sbjct: 149 GDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKK 208

Query: 172 R 172
           R
Sbjct: 209 R 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 55  LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 114
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 115 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 144
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 54  YLYTVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 110
           Y   + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++
Sbjct: 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFIS 157

Query: 111 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 150
             L   I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 47  AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 106
           A S  +L +   L   G G   + P  ++  A+ F  +         R    F     +G
Sbjct: 84  ASSLWLLLVGRFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLG 135

Query: 107 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 147
           A++   L   +    GW   F  LAI   +  +L      L
Sbjct: 136 ALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.45
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.37
PRK10054	395	putative transporter; Provisional	99.34
TIGR00893	399	2A0114 d-galactonate transporter.	99.3
PRK03545	390	putative arabinose transporter; Provisional	99.28
TIGR00900	365	2A0121 H+ Antiporter protein.	99.28
PRK05122	399	major facilitator superfamily transporter; Provisi	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.26
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.25
PRK09874	408	drug efflux system protein MdtG; Provisional	99.23
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.22
PRK10504	471	putative transporter; Provisional	99.2
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PRK12382	392	putative transporter; Provisional	99.2
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.19
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.19
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.13
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.12
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.11
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.11
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.1
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.09
TIGR00901	356	2A0125 AmpG-related permease.	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.06
PRK12307	426	putative sialic acid transporter; Provisional	99.05
TIGR00895	398	2A0115 benzoate transport.	99.02
PRK11663	434	regulatory protein UhpC; Provisional	99.02
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.02
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.02
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.01
PRK11010	491	ampG muropeptide transporter; Validated	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.99
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.99
PRK15011	393	sugar efflux transporter B; Provisional	98.96
TIGR00898	505	2A0119 cation transport protein.	98.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.94
PRK09848	448	glucuronide transporter; Provisional	98.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.92
PRK11043	401	putative transporter; Provisional	98.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.91
PRK03633	381	putative MFS family transporter protein; Provision	98.9
PRK11902	402	ampG muropeptide transporter; Reviewed	98.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.87
PRK09705	393	cynX putative cyanate transporter; Provisional	98.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.86
PRK03893	496	putative sialic acid transporter; Provisional	98.85
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.84
PRK10091	382	MFS transport protein AraJ; Provisional	98.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.81
PRK10642	490	proline/glycine betaine transporter; Provisional	98.81
TIGR00891	405	2A0112 putative sialic acid transporter.	98.81
PRK09528	420	lacY galactoside permease; Reviewed	98.8
PRK03699	394	putative transporter; Provisional	98.8
PRK10429	473	melibiose:sodium symporter; Provisional	98.77
PF13347	428	MFS_2: MFS/sugar transport protein	98.77
PRK09669	444	putative symporter YagG; Provisional	98.76
PLN00028	476	nitrate transmembrane transporter; Provisional	98.7
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.69
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.63
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.62
KOG2532	466	consensus Permease of the major facilitator superf	98.62
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.61
PRK11462	460	putative transporter; Provisional	98.59
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.58
PRK09952	438	shikimate transporter; Provisional	98.58
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.57
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.53
PRK15075	434	citrate-proton symporter; Provisional	98.52
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.51
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.47
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.39
PRK10133	438	L-fucose transporter; Provisional	98.28
COG2211	467	MelB Na+/melibiose symporter and related transport	98.27
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.21
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.05
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.05
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.96
KOG2533	495	consensus Permease of the major facilitator superf	97.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.92
TIGR00805	633	oat sodium-independent organic anion transporter.	97.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.89
TIGR00891	405	2A0112 putative sialic acid transporter.	97.89
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.83
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.8
PRK03545	390	putative arabinose transporter; Provisional	97.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.8
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.78
TIGR00893	399	2A0114 d-galactonate transporter.	97.78
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.75
TIGR00900	365	2A0121 H+ Antiporter protein.	97.73
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.72
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.68
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.62
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.61
PRK11663	434	regulatory protein UhpC; Provisional	97.6
PRK09874	408	drug efflux system protein MdtG; Provisional	97.59
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.59
PRK05122	399	major facilitator superfamily transporter; Provisi	97.56
TIGR00895	398	2A0115 benzoate transport.	97.54
PRK10054	395	putative transporter; Provisional	97.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.51
PRK10091	382	MFS transport protein AraJ; Provisional	97.51
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.51
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.47
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.46
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.42
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.4
KOG2615	451	consensus Permease of the major facilitator superf	97.39
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.36
PRK03699	394	putative transporter; Provisional	97.36
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.35
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.34
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.33
KOG0569	485	consensus Permease of the major facilitator superf	97.3
TIGR00805	633	oat sodium-independent organic anion transporter.	97.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.29
PRK12307	426	putative sialic acid transporter; Provisional	97.28
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.28
KOG3762	618	consensus Predicted transporter [General function	97.26
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.24
PRK03633	381	putative MFS family transporter protein; Provision	97.22
PRK10504	471	putative transporter; Provisional	97.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.19
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.18
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.15
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.15
PRK09705	393	cynX putative cyanate transporter; Provisional	97.14
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.1
PRK12382	392	putative transporter; Provisional	97.09
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.08
PRK10489	417	enterobactin exporter EntS; Provisional	97.07
PRK03893	496	putative sialic acid transporter; Provisional	97.05
PTZ00207	591	hypothetical protein; Provisional	97.02
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.02
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.99
TIGR00898	505	2A0119 cation transport protein.	96.95
TIGR00901	356	2A0125 AmpG-related permease.	96.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.92
PRK11902	402	ampG muropeptide transporter; Reviewed	96.87
KOG0254	513	consensus Predicted transporter (major facilitator	96.85
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.8
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.75
KOG3626	735	consensus Organic anion transporter [Secondary met	96.75
PTZ00207	591	hypothetical protein; Provisional	96.72
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.72
PRK11043	401	putative transporter; Provisional	96.71
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.67
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.66
PRK10133	438	L-fucose transporter; Provisional	96.63
KOG2563	480	consensus Permease of the major facilitator superf	96.58
PRK11010	491	ampG muropeptide transporter; Validated	96.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.55
KOG3626	735	consensus Organic anion transporter [Secondary met	96.51
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.51
KOG2533	495	consensus Permease of the major facilitator superf	96.5
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.48
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.26
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.26
PLN00028	476	nitrate transmembrane transporter; Provisional	96.24
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.18
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.08
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.05
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.94
KOG2532	466	consensus Permease of the major facilitator superf	95.9
PRK10642	490	proline/glycine betaine transporter; Provisional	95.82
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.71
PRK09528	420	lacY galactoside permease; Reviewed	95.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.59
PRK09952	438	shikimate transporter; Provisional	95.45
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.34
PRK15011	393	sugar efflux transporter B; Provisional	95.31
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.19
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.93
PRK15075	434	citrate-proton symporter; Provisional	94.63
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.61
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.47
KOG0254	513	consensus Predicted transporter (major facilitator	94.36
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.23
PRK09669	444	putative symporter YagG; Provisional	94.18
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	94.17
PRK09848	448	glucuronide transporter; Provisional	93.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.9
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.69
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	93.54
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.25
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	93.18
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	92.91
KOG0569	485	consensus Permease of the major facilitator superf	92.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.51
PF13347	428	MFS_2: MFS/sugar transport protein	92.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	90.91
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.42
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	90.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.69
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	89.01
PRK10429	473	melibiose:sodium symporter; Provisional	88.88
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.08
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	87.79
PRK11462	460	putative transporter; Provisional	87.77
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.78
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	84.78
KOG2615	451	consensus Permease of the major facilitator superf	83.45
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	82.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	82.32
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	81.3

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-79  Score=655.84  Aligned_cols=461  Identities=43%  Similarity=0.717  Sum_probs=417.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccC
Q 010840            2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF   81 (499)
Q Consensus         2 ~~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~   81 (499)
                      .||.+++++|++|+.+|++++..|.++|+  .|.. ......|++++..+...+|.+|+++++|+|++|||+.++++|||
T Consensus       105 ~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~~~-~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf  181 (571)
T KOG1237|consen  105 FTINIGSLISLLGLFGLTLSAMIPALLPF--MCKF-KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF  181 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cccC-CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence            47899999999999999999999999997  6510 01145799999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH
Q 010840           82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~  161 (499)
                      |+.++++++.+.++|||||+.+|+|.+++.++..|+|++.||.++|++++++|++++++|+.|++.|++++|.|+|++.+
T Consensus       182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i  261 (571)
T KOG1237|consen  182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRI  261 (571)
T ss_pred             CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHH
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeecccccc---CCCCCccccccchhhHhH
Q 010840          162 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVK  238 (499)
Q Consensus       162 ~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~---~~~~~~~~~~~~~ve~~k  238 (499)
                      .+|++++++|++.+.+.+... + +.     .........++++++++|+|+++...+.   ...+||++|+++||||+|
T Consensus       262 ~~Vlvaa~~k~~~~~~~~~~~-~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K  334 (571)
T KOG1237|consen  262 GQVLVAAAFKRKAVVSLDPEE-L-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVK  334 (571)
T ss_pred             HHHHHHHHHHHhccCCCcchh-c-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhh
Confidence            999999999998877765432 1 10     1112223356788999999998765432   125889999999999999


Q ss_pred             HhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC-eeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 010840          239 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRG  317 (499)
Q Consensus       239 ~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g-~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~  317 (499)
                      .++|++|+|++.++||+++.|+.|.++.|+.+|||++++ |++|+++++.+..+.+++++|++|++++|+.||.++++++
T Consensus       335 ~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~  414 (571)
T KOG1237|consen  335 AVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFG  414 (571)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCC
Confidence            999999999999999999999999999999999999997 9999999999999999999999999999999999998888


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      +++++||++|+++++++|.+++++|.+|++.+.++     ..++++ +|++||+|||+++|+||+|.+++++||+|+|||
T Consensus       415 ~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP  488 (571)
T KOG1237|consen  415 ITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAP  488 (571)
T ss_pred             CChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCC
Confidence            99999999999999999999999999999988651     112466 999999999999999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccc-ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~-~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      ++|||+.+++|+++.|+|++++.++++++...++  +  .++|++ +|+|++|+|+|||+++.++.+|.+.|..++++|+
T Consensus       489 ~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~  564 (571)
T KOG1237|consen  489 ESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYD  564 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeee
Confidence            9999999999999999999999999999998763  1  357999 9999999999999999999999999999999999


Q ss_pred             cccccc
Q 010840          477 YRSEQK  482 (499)
Q Consensus       477 ~~~~~~  482 (499)
                      +++.++
T Consensus       565 ~~~~~~  570 (571)
T KOG1237|consen  565 YKDDKD  570 (571)
T ss_pred             eccccC
Confidence            986554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-54  Score=440.98  Aligned_cols=389  Identities=16%  Similarity=0.205  Sum_probs=303.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ||++|.+++++|+++|+.++.                          .....++++|.+|++|+|++|||++++++|||+
T Consensus        94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence            789999999999999998751                          134589999999999999999999999999999


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccC--CCCChHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR  160 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~--p~g~pl~~  160 (499)
                      ++|||    ||..|+.||+++|+|++++|++++++++++||+.+|++++++|.+++++|+++++++....  |+.+|...
T Consensus       148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~  223 (498)
T COG3104         148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF  223 (498)
T ss_pred             CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence            99997    7999999999999999999999999999999999999999999999999999999987763  33344321


Q ss_pred             ------HHHHHHHHHhh--ccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccc
Q 010840          161 ------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVT  232 (499)
Q Consensus       161 ------~~~vl~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~  232 (499)
                            ...++...++.  ......+     .+...      .   ...     ..  .....+...   ...|   +.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~------~---~~~-----~i--~~~~~~~~~---~~~~---~~~  276 (498)
T COG3104         224 NFLLPVLGGLVVMILAALLTLLLNQN-----TFSGV------L---LVI-----SI--LIAIIYFAE---AFRS---PKV  276 (498)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHH------H---HHH-----HH--HHHHHHHHH---Hhcc---Ccc
Confidence                  11111111000  0000000     00000      0   000     00  000000000   0111   223


Q ss_pred             hhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010840          233 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI  311 (499)
Q Consensus       233 ~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~  311 (499)
                      + ||+||+++++|+++..++||++|+|+.|+++.|++ +.|+++.|+++|++|+|++||++|+++.|+++++|+|+.++.
T Consensus       277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~  355 (498)
T COG3104         277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN  355 (498)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence            4 89999999999999999999999999999999998 678886779999999999999999999999999999988874


Q ss_pred             cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840          312 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF  391 (499)
Q Consensus       312 ~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef  391 (499)
                       ++   +++..|+++|++++++++++........   +.         +... +|+||++++|+++++||+|++|+++|+
T Consensus       356 -~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~---~~---------~~~~-~s~~~lil~y~l~s~gEL~iSpvGLs~  418 (498)
T COG3104         356 -KQ---PSTPIKFALGLILAGLGFLILLLAGIWF---GG---------PSGL-VSVWWLVLSYVLQSFGELFISPVGLSM  418 (498)
T ss_pred             -CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh---cC---------CCCC-cCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence             34   8999999999999999999988775431   11         0123 889999999999999999999999999


Q ss_pred             HHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          392 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       392 ~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                      ++++||++++|.+||+|+++.+.|+.+++.+...... +      ++     -.+..+.-.+|+.++..+++..+++...
T Consensus       419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~------~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T------DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c------ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998763110 1      00     1111233458999999999999999999


Q ss_pred             hcccccc
Q 010840          472 AYRYKYR  478 (499)
Q Consensus       472 ~~~y~~~  478 (499)
                      +++.++.
T Consensus       487 ~~~~~r~  493 (498)
T COG3104         487 SPKLNRM  493 (498)
T ss_pred             hHHHHHh
Confidence            9887754

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=2.7e-49  Score=429.69  Aligned_cols=391  Identities=24%  Similarity=0.372  Sum_probs=323.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccC
Q 010840            2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF   81 (499)
Q Consensus         2 ~~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~   81 (499)
                      .+|+++++++.+|++++++++..+..+                    ..+...++++|+++++|+|++|||++++++|||
T Consensus        55 ~tIl~~~ii~~lG~~llai~a~~~~~~--------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf  114 (654)
T TIGR00926        55 KTILYLSIVYVVGHALLSFGAIPSSGH--------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF  114 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccccc--------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence            378899999999999999987622221                    124556889999999999999999999999999


Q ss_pred             CCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHhccccccccCCC
Q 010840           82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPG  154 (499)
Q Consensus        82 ~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-------g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~  154 (499)
                      +++++   ++++++|+||||++|+|+++++++++++++++       ||+++|++++++|++++++|..++|+|++.+|+
T Consensus       115 ~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~  191 (654)
T TIGR00926       115 EERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPK  191 (654)
T ss_pred             Cccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence            86543   34899999999999999999999999998654       699999999999999999999999999988899


Q ss_pred             CChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchh
Q 010840          155 GSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQV  234 (499)
Q Consensus       155 g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v  234 (499)
                      ++++.++.++++.++|++......                       + ...+|+|+++...             .++++
T Consensus       192 gs~l~~v~~vi~~a~~~~~~~~~~-----------------------~-~~~~~ld~a~~~~-------------~~~~V  234 (654)
T TIGR00926       192 GNIVSKVIKCIVTALRKRFSTRSE-----------------------H-WPLHWLDYAKDKH-------------DIRMI  234 (654)
T ss_pred             ccHHHHHHHHHHHHHHHhhccCCc-----------------------c-cchhHHHHhcccc-------------ccchH
Confidence            999999999998887764321110                       0 0135677665432             34679


Q ss_pred             hHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010840          235 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGH  314 (499)
Q Consensus       235 e~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~  314 (499)
                      ||+|++++++++++..++||.++.|+.|+++.|+.+||++++++.+|+++++++|++.++++.|++++.++|.++|++.+
T Consensus       235 ~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~  314 (654)
T TIGR00926       235 RSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR  314 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999886544


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------------------h---
Q 010840          315 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA-----------------------------------------I---  350 (499)
Q Consensus       315 ~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~-----------------------------------------~---  350 (499)
                         +++++|+++|++++++++++++++|.++++..                                         .   
T Consensus       315 ---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (654)
T TIGR00926       315 ---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTS  391 (654)
T ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccc
Confidence               79999999999999999999999998754000                                         0   


Q ss_pred             ----------h-------------------c-------------C----C------c-----------------------
Q 010840          351 ----------S-------------------H-------------G----Y------E-----------------------  355 (499)
Q Consensus       351 ----------~-------------------~-------------g----~------~-----------------------  355 (499)
                                .                   .             +    +      .                       
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  471 (654)
T TIGR00926       392 GDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRL  471 (654)
T ss_pred             cccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEE
Confidence                      0                   0             0    0      0                       


Q ss_pred             ------c-----------------------------------------------------------------cc------
Q 010840          356 ------F-----------------------------------------------------------------SF------  358 (499)
Q Consensus       356 ------~-----------------------------------------------------------------~~------  358 (499)
                            +                                                                 +.      
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  551 (654)
T TIGR00926       472 VNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQ  551 (654)
T ss_pred             EecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccccccccccccceEEEEEEcCCCCCCcce
Confidence                  0                                                                 00      


Q ss_pred             ------cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCC
Q 010840          359 ------LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN  432 (499)
Q Consensus       359 ------~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~  432 (499)
                            ..+++ +|++||+|||+++++||++.+++++||.|+|||++||+..+++|.++.++|+.+...+... ....  
T Consensus       552 ~~~~~~~~~~~-~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~-~~~~--  627 (654)
T TIGR00926       552 AQIVELVSVNT-VSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF-ENFS--  627 (654)
T ss_pred             eEEEEecCCCc-eeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCh--
Confidence                  00222 7889999999999999999999999999999999999999999999999999998777543 1110  


Q ss_pred             CCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840          433 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  475 (499)
Q Consensus       433 ~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y  475 (499)
                                      +...-|.+++.++++..++|.++++.|
T Consensus       628 ----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       628 ----------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                            123467888999999999999999776

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=8.2e-51  Score=419.39  Aligned_cols=365  Identities=31%  Similarity=0.447  Sum_probs=261.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ||++|+++|++|+++|++++. |...+                  ++.+.+++++||+++++|+|++|||+++|++|||+
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~-~~~~~------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~   63 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAI-PPSLP------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD   63 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHT-SSSC------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS
T ss_pred             hhhHHHHHHHHHHHHhHHHHh-cchhh------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc
Confidence            789999999999999999998 44322                  34678899999999999999999999999999999


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc-CCCCChHHH-
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR-  160 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~-~p~g~pl~~-  160 (499)
                      ++++   ++++++|+||||++|+|++++.++++|+++++||+++|++++++|++++++|+.++++|++. +|.++++.+ 
T Consensus        64 ~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~  140 (372)
T PF00854_consen   64 EDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNF  140 (372)
T ss_dssp             TTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--
T ss_pred             ccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchh
Confidence            8752   24899999999999999999999999999999999999999999999999999999999998 788898888 


Q ss_pred             HHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcc-ccccchhhHhHH
Q 010840          161 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKT  239 (499)
Q Consensus       161 ~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~-~~~~~~ve~~k~  239 (499)
                      ...++.++.+++....|..... +++.....   . ....  .......+ +...+...   ...|. .|+++++|++|.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~-~~~~--~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~k~  209 (372)
T PF00854_consen  141 IKLVLVAAFKKRKLAVPKGSSW-LDWALFQY---S-ERSI--FGIIVFIR-AAVIFFPE---IFFWALFCQVQRVEELKA  209 (372)
T ss_dssp             SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH---C-CCCC--CCCCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHCCH
T ss_pred             HHHHHHHHHHHhhcccccchHH-HHHhhhhh---h-hhhh--hhhhhhcc-chhhhhhh---hhhcccCCccceeeeeee
Confidence            5556666666665544321111 11100000   0 0000  00000000 11111000   01222 167889999999


Q ss_pred             hhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC-eeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 010840          240 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA  318 (499)
Q Consensus       240 ~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g-~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~  318 (499)
                      +.+.+|++...++|+.++.|..+....|+.+||+.+++ +++|+++++++|++++++++|+++++++|+.|+ .+   ++
T Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~  285 (372)
T PF00854_consen  210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QP  285 (372)
T ss_dssp             HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--------
T ss_pred             eeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cc
Confidence            99999999999999999999999999999999999998 999999999999999999999999999999983 23   38


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ++++|+++|++++++++++++.+|.+|....+++|.          .+.+|++|+|++++++|+++++++++..++.+|+
T Consensus       286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~  355 (372)
T PF00854_consen  286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPS  355 (372)
T ss_dssp             --HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHH
Confidence            999999999999999999999999988766555432          5669999999999999999999999988888888


Q ss_pred             hhhHHHHhHHHHHhHH
Q 010840          399 AMKSIGSAYAALAGGL  414 (499)
Q Consensus       399 ~mr~~~~gl~~l~~a~  414 (499)
                      ++++.++|+|+...++
T Consensus       356 ~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  356 RAPSSMMGIWFALSAF  371 (372)
T ss_dssp             T-SSSSTHHHHHHH--
T ss_pred             hhhHHHHHHHHHHhcc
Confidence            8888888888876654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.9e-42  Score=361.71  Aligned_cols=394  Identities=13%  Similarity=0.119  Sum_probs=284.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++++|.++..+|++++.....                           ....+++++.++++|+|++|||.+++++|+|+
T Consensus        78 ~iliG~il~~lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp  130 (493)
T PRK15462         78 AVMLGALLMAIGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYE  130 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCC
Confidence            567888888888876653211                           11246678888999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCC-CCChHH--
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLT--  159 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p-~g~pl~--  159 (499)
                      ++|++    |+++|+++|+++|+|++++|.+++++++++||+.+|++++++|++++++++.++|++.+..+ +.+|.+  
T Consensus       131 ~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~  206 (493)
T PRK15462        131 PTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRAT  206 (493)
T ss_pred             CCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhh
Confidence            87654    78999999999999999999999999999999999999999999999999998887755311 112221  


Q ss_pred             HHHHH-----HHHH-----HhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcccc
Q 010840          160 RVAQV-----LVAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLC  229 (499)
Q Consensus       160 ~~~~v-----l~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~  229 (499)
                      +..+.     ....     .......... ... +..                     ..-.....+....  ..    .
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---------------------~~~~~~~~~~~~~--~~----~  257 (493)
T PRK15462        207 NFLLPNWGWLLVLLVATPALITVLFWKEW-SVY-ALI---------------------VATIIGLGVLAKI--YR----K  257 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHH---------------------HHHHHHHHHHHHH--HH----h
Confidence            10000     0000     0000000000 000 000                     0000000000000  00    0


Q ss_pred             ccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHh
Q 010840          230 TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC  308 (499)
Q Consensus       230 ~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~  308 (499)
                      . ...+|+||+..++++++..++||+.|+|++++++.+++ ++|++++||++|++|+|++||++|+++.|++.++|.++.
T Consensus       258 ~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~  336 (493)
T PRK15462        258 A-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESV  336 (493)
T ss_pred             c-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence            1 12478999999999999999999999999999999998 799999999999999999999999999999999998875


Q ss_pred             hhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010840          309 RRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGL  388 (499)
Q Consensus       309 ~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~  388 (499)
                      +|.    ++++.++|+++|+++.++|++++.+....    .++         ... +|++|++..|+++++||++.+|.+
T Consensus       337 ~~~----~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~---------~~~-~s~~wl~~~~~~~t~gEl~~sPvg  398 (493)
T PRK15462        337 AGN----RTVRIWGKFALGLGLMSAGFCILTLSARW----SAM---------YGH-SSLPLMVLGLAVMGFAELFIDPVA  398 (493)
T ss_pred             cCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCC-cCHHHHHHHHHHHHHHHHHHChHH
Confidence            542    23899999999999999999999876532    111         123 789999999999999999999999


Q ss_pred             HHHHHhhcCchhhHHHHhHHHHHh-HHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHH--H
Q 010840          389 LEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--F  465 (499)
Q Consensus       389 ~ef~~~~aP~~mr~~~~gl~~l~~-a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~--~  465 (499)
                      ++++.+.||++++|++||+|++.. ++|+.+++.+.+....-+.     ++.-...+ +..++..+|..++.++++.  .
T Consensus       399 ls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~  472 (493)
T PRK15462        399 MSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-----DASGAINY-SINAYIEVFDQITWGALACVGV  472 (493)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----Cccccccc-hhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999955 8999999999887542110     11000000 1113455777777766555  4


Q ss_pred             HHHHHhhccccccccc
Q 010840          466 CAFLYSAYRYKYRSEQ  481 (499)
Q Consensus       466 ~~~~~~~~~y~~~~~~  481 (499)
                      +++..+.+..|.|||.
T Consensus       473 ~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        473 VLMIWLYQALKFRNRA  488 (493)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            5555566666777765

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=9.6e-39  Score=340.20  Aligned_cols=394  Identities=9%  Similarity=0.119  Sum_probs=290.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.+|.+++.+|++++.++..                           ...++++++.++++|.|++|||..++++|||+
T Consensus        83 ~~~~g~~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p  135 (489)
T PRK10207         83 TIVLGAIVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYP  135 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence            577888999999988876532                           11246788999999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCChHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR  160 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~--~p~g~pl~~  160 (499)
                      ++++|    |++.|+++|+++|+|+++|+.+++++.+++||+++|.++++++.++++.+..+++++++.  +|++++...
T Consensus       136 ~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  211 (489)
T PRK10207        136 PKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSF  211 (489)
T ss_pred             CCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhh
Confidence            76643    678999999999999999999999999999999999999999999999998888777653  343443321


Q ss_pred             --HHHHH------HHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccc
Q 010840          161 --VAQVL------VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVT  232 (499)
Q Consensus       161 --~~~vl------~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~  232 (499)
                        ...+.      ...+.. ..+.. +...  +                      .+..........    .-++..+.+
T Consensus       212 ~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~--~----------------------~~~~~~~i~~~~----f~~~~~~~~  261 (489)
T PRK10207        212 SKLLLVLLGSVVMIFVCAW-LMHNV-EVAN--L----------------------VLIVLSIVVTII----FFREAFKLD  261 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHH-HHhhh-hHHH--H----------------------HHHHHHHHHHHH----HHHHHhcCC
Confidence              11000      000000 00000 0000  0                      000000000000    000001222


Q ss_pred             hhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010840          233 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI  311 (499)
Q Consensus       233 ~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~  311 (499)
                       ..++++.+..+++++..++||.+++|+.+.++.|++ ++|++..|+.+|++++|++|++.++++.|+..+++.++.+| 
T Consensus       262 -~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r-  339 (489)
T PRK10207        262 -KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK-  339 (489)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-
Confidence             355777888888899999999999999999999988 68888889999999999999999999999999877665444 


Q ss_pred             cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840          312 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF  391 (499)
Q Consensus       312 ~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef  391 (499)
                      ..+   +++.+|+++|+++.++|++++++.+...   ...         ... +|+||++++|++.|+||.+.+|.++|+
T Consensus       340 ~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---------~~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~  403 (489)
T PRK10207        340 GKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---------QGL-TSPWFIVLVYLFQSLGELFISALGLAM  403 (489)
T ss_pred             CCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            233   8999999999999999998887654311   100         112 779999999999999999999999999


Q ss_pred             HHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          392 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       392 ~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                      +++.+|++++|.+||+|+++.++|+.+|+.+.+.+.. ++  ...|| .   . .++.+..+|..+++.+++..++++++
T Consensus       404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~--~~~~~-~---~-~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD--NITDP-L---E-TLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc-h---h-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877542 11  00011 0   0 11235679999999999999999999


Q ss_pred             hccccccccccc
Q 010840          472 AYRYKYRSEQKH  483 (499)
Q Consensus       472 ~~~y~~~~~~~~  483 (499)
                      .|++++.-++||
T Consensus       476 ~~~~~~~~~~~~  487 (489)
T PRK10207        476 VPWLNRMINTPE  487 (489)
T ss_pred             HHHHHHHhcccc
Confidence            999987644443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=4.1e-38  Score=334.78  Aligned_cols=381  Identities=13%  Similarity=0.129  Sum_probs=283.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.+++.+|++++.++.                            +.+.+++++.++++|.|+++|+..++++|+++
T Consensus        81 ~l~~~~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~  132 (475)
T TIGR00924        81 TMVLGGIVLMLGHFMLAMSI----------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE  132 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhcc----------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence            57788888888888777532                            12467778889999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH-
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-  161 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~-  161 (499)
                      +++++   +|+++|+++|+++|+|+++|+.+++++.+++||+++|.++++.+++++++++..++.+++.++++++.+.. 
T Consensus       133 ~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  209 (475)
T TIGR00924       133 RGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQG  209 (475)
T ss_pred             CCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhh
Confidence            76532   26889999999999999999999999999999999999999999999999988888887654433332110 


Q ss_pred             ----H--HHH----HHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcccccc
Q 010840          162 ----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV  231 (499)
Q Consensus       162 ----~--~vl----~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~  231 (499)
                          .  .++    ....+.. .....  .   +.         . ....+.     ...+...+.... ..+|    +.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~-~~~~~--~---~~---------~-~~~~~~-----~~~~~~~~~~~~-~~~~----~~  263 (475)
T TIGR00924       210 KTYGKLLLALLAALALVFFCA-WLMHH--V---VI---------A-NILLMT-----VTLAVIIFFFRL-AFKP----RL  263 (475)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHhc--c---HH---------H-HHHHHH-----HHHHHHHHHHHH-HHhc----cC
Confidence                0  000    0011100 00000  0   00         0 000000     000000000000 0011    12


Q ss_pred             chhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhh
Q 010840          232 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR  310 (499)
Q Consensus       232 ~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r  310 (499)
                      ++ +|+++..++++++++.++||++|+|+.+++..|+. ++|++++++++|+++++++|++++++++|+++++|.++.||
T Consensus       264 ~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~  342 (475)
T TIGR00924       264 DA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK  342 (475)
T ss_pred             CH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            33 34555667899999999999999999999876654 79999999999999999999999999999999887776665


Q ss_pred             hcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840          311 ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLE  390 (499)
Q Consensus       311 ~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~e  390 (499)
                       .++   ++...|+++|+++.++|++.++++...    +++         ..+ +|+||++++|+++|+||++++|++++
T Consensus       343 -~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~  404 (475)
T TIGR00924       343 -GKD---PTTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGL-TSPWFMVLIYLFQTLGELMISPLGLS  404 (475)
T ss_pred             -CCC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence             233   788999999999999999999876321    111         234 88999999999999999999999999


Q ss_pred             HHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 010840          391 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  470 (499)
Q Consensus       391 f~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~  470 (499)
                      +++++||+++||.++|+|.+..++|+.+++.+.+.....        .+|          ..+|..+++++++.+++++.
T Consensus       405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP--------QGV----------TGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cch----------hhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998764311        112          34888899999999999988


Q ss_pred             hhccccc
Q 010840          471 SAYRYKY  477 (499)
Q Consensus       471 ~~~~y~~  477 (499)
                      +.|+.++
T Consensus       467 ~~~~~~k  473 (475)
T TIGR00924       467 MVPWLNR  473 (475)
T ss_pred             HHHHHHh
Confidence            8888765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.3e-37  Score=332.95  Aligned_cols=390  Identities=12%  Similarity=0.162  Sum_probs=286.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.+++.+|+.++.++..                           ....+++++.++++|.|+++|+..++++|+|+
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~  142 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYE  142 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcC
Confidence            566777888888777765421                           12456788899999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCChHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR  160 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~--~p~g~pl~~  160 (499)
                      ++++|    +++.++++|+++|+|+++|+.+++++.+++||+++|.++++.++++++.++..++.+++.  +|+++|...
T Consensus       143 ~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  218 (500)
T PRK09584        143 KDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINY  218 (500)
T ss_pred             CCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccch
Confidence            65543    567899999999999999999999999999999999999999999998888877666543  233333321


Q ss_pred             ------HHHHHHHHH-hhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccch
Q 010840          161 ------VAQVLVAAF-RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQ  233 (499)
Q Consensus       161 ------~~~vl~~a~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~  233 (499)
                            ...+..... .......+..     ..            ..     ..+.........       ....+..+ 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~-----~~~~~~~~~~~~-------~~~~~~~~-  268 (500)
T PRK09584        219 RKLLLTIVGVVALIAIATWLLHNQEI-----AR------------MA-----LGVVALGIVVIF-------GKEAFAMK-  268 (500)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcchH-----HH------------HH-----HHHHHHHHHHHH-------HHHHhhcC-
Confidence                  111111111 1000000000     00            00     000000000000       00001223 


Q ss_pred             hhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 010840          234 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRIT  312 (499)
Q Consensus       234 ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~  312 (499)
                      .+|+|+.+..+++++..++||+++.|+.+.+..|+. ++|++++|+.+|+++++++|++.+++++|+.++++.++.+|  
T Consensus       269 ~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r--  346 (500)
T PRK09584        269 GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR--  346 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC--
Confidence            356777778888999999999999999999999987 68888889999999999999999999999999987665444  


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840          313 GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL  392 (499)
Q Consensus       313 ~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~  392 (499)
                           +++.+|+++|+++.++|++++++....    +++         ... +|++|++++|+++|+||++++|.+++++
T Consensus       347 -----~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~  407 (500)
T PRK09584        347 -----LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------AGI-VSVNWLIASYGLQSIGELMISGLGLAMV  407 (500)
T ss_pred             -----CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                 578899999999999999998876432    111         123 8899999999999999999999999999


Q ss_pred             HhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC-ccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          393 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI-NTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       393 ~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l-n~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                      ++++|+++||++||+|+++.++|+.+++.+.+.+.. +.        -..|.. ..+.+..+|..+++++++..++++.+
T Consensus       408 ~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~--------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~  478 (500)
T PRK09584        408 AQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD--------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT  478 (500)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875431 10        011111 11225568888999998889999999


Q ss_pred             hccccccccccc
Q 010840          472 AYRYKYRSEQKH  483 (499)
Q Consensus       472 ~~~y~~~~~~~~  483 (499)
                      +++.++..++|+
T Consensus       479 ~~~~~k~~~~~~  490 (500)
T PRK09584        479 APKLNRMTQDDS  490 (500)
T ss_pred             HHHHHHHhcCCC
Confidence            999987755555

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.45  E-value=6.1e-11  Score=124.03  Aligned_cols=299  Identities=13%  Similarity=0.002  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.+++...+.+++.|...+...+.+.|.+++++      +.+...+++...++|..+|+.+++++.+..+|++.|.+.+
T Consensus       110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence            3455566667778888878888888888876422      5677888999999999999999999988889999998877


Q ss_pred             HHHHHHHHHHHhccccccccCCCC----ChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccc
Q 010840          132 IAMGISNMLFFIGTPLYRHRLPGG----SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR  207 (499)
Q Consensus       132 ~~m~l~~i~f~~g~~~~~~~~p~g----~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  207 (499)
                      +..+++.+..+..+    ..+|+.    ++....                                              
T Consensus       184 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~----------------------------------------------  213 (417)
T PRK10489        184 AGTFITLLPLLRLP----ALPPPPQPREHPLRSL----------------------------------------------  213 (417)
T ss_pred             HHHHHHHHHHHhCC----CCCCCCcccccchHHH----------------------------------------------
Confidence            77766655433211    111110    000000                                              


Q ss_pred             cccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---c
Q 010840          208 CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---C  284 (499)
Q Consensus       208 ~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~  284 (499)
                       .              ..++     .+-..+.+ +  .+++.... +.......+.+....   ....   +.++.   +
T Consensus       214 -~--------------~~~~-----~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~p~~~---~~~~---g~~~~~~g~  263 (417)
T PRK10489        214 -L--------------AGFR-----FLLASPVV-G--GIALLGGL-LTMASAVRVLYPALA---DEVW---QMGAAQIGL  263 (417)
T ss_pred             -H--------------HHHH-----HHHcChHH-H--HHHHHHHH-HHHHHhHHHhhHHHH---Hhcc---CCChhHhHH
Confidence             0              0000     00000111 1  11111111 111111111111111   1101   12222   2


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840          285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  364 (499)
Q Consensus       285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~  364 (499)
                      +.....+..++..++..++    .+|       .+..+-+.++.++.+++++..+..                       
T Consensus       264 ~~~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~-----------------------  309 (417)
T PRK10489        264 LYAAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM-----------------------  309 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc-----------------------
Confidence            2333333334443333322    222       122233556666666665443321                       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  444 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~  444 (499)
                      .++++.+...++.+++.....+....+..+..|++.||..+|++.....+|..+|+.+...+....              
T Consensus       310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~--------------  375 (417)
T PRK10489        310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM--------------  375 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh--------------
Confidence            224445556778889888888888899999999999999999999888888888888876654211              


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchh
Q 010840          445 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE  488 (499)
Q Consensus       445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~  488 (499)
                       +   ....++..+.+.++..++.....+++|.+..+|.|+|..
T Consensus       376 -g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        376 -T---PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS  415 (417)
T ss_pred             -c---hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence             0   112444455555555555555556666655555555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.37  E-value=4.1e-10  Score=117.46  Aligned_cols=260  Identities=13%  Similarity=0.131  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.+++.|.+.|...+.+.|.+++++      |.+.+.+++...++|..+|+.+++++. ++||+..|.+.+
T Consensus        99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~  171 (400)
T PRK11646         99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA  171 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            3556777788888999999999999988876422      678999999999999999999999998 789999999887


Q ss_pred             HHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccc
Q 010840          132 IAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK  211 (499)
Q Consensus       132 ~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~  211 (499)
                      +..+++.+......+..+ +++..++.           +                                         
T Consensus       172 ~~~~~~~i~~~~~~~~~~-~~~~~~~~-----------~-----------------------------------------  198 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAYK-LSTVRTPV-----------R-----------------------------------------  198 (400)
T ss_pred             HHHHHHHHHHHHhCCccc-ccccchhh-----------H-----------------------------------------
Confidence            776665543332211100 00000000           0                                         


Q ss_pred             eeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHH
Q 010840          212 AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGL  291 (499)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i  291 (499)
                                  ..|+    +-..+. +.+.   +.+....++..+.|....+....   .+ .++...-..++..++.+
T Consensus       199 ------------~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~p~~~---~~-~~~~~~~~g~l~~~~~~  254 (400)
T PRK11646        199 ------------EGMT----RVLRDK-RFVT---YVLTLTGYYMLAVQVMLMLPIMV---ND-IAGSPSAVKWMYAIEAC  254 (400)
T ss_pred             ------------HHHH----HHHcCc-hHHH---HHHHHHHHHHHHHHHHHhhhhhH---Hh-hcCCchHHHHHHHHHHH
Confidence                        0000    000011 1111   11112223333333222221111   11 11101001122333333


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHH
Q 010840          292 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLL  371 (499)
Q Consensus       292 ~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli  371 (499)
                      ..+......    .+...|+      .+..+++..|+++.+++++..+..                       .+.++.+
T Consensus       255 ~~~~~~~~~----~~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~-----------------------~~~~~~~  301 (400)
T PRK11646        255 LSLTLLYPI----ARWSEKR------FRLEHRLMAGLLIMSLSMFPIGMV-----------------------SNLQQLF  301 (400)
T ss_pred             HHHHHHHHH----HHHHHHh------cchhHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHHH
Confidence            222222111    2222221      233455777777777776554433                       1234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840          372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  428 (499)
Q Consensus       372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~  428 (499)
                      ...++.++++.+..|.......+.+|++.||..+|++.+..++|..+|+.+...+..
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            455778999999999999999999999999999999999999999999988877653

>PRK10054 putative transporter; Provisional

Probab=99.34  E-value=3.1e-10  Score=118.09  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  133 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~  133 (499)
                      .++++..+.+.+.+.+.|...+...|.+++++      |.+.++++|...|+|..+++.+.+++.+ .||+..|.+.++.
T Consensus        98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~  170 (395)
T PRK10054         98 LVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC  170 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence            34444455666667778888888888886432      6789999999999999999999999874 7999999988877


Q ss_pred             HHHHHH
Q 010840          134 MGISNM  139 (499)
Q Consensus       134 m~l~~i  139 (499)
                      .+++++
T Consensus       171 ~~i~~i  176 (395)
T PRK10054        171 SAFPLV  176 (395)
T ss_pred             HHHHHH
Confidence            777654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.30  E-value=2.7e-09  Score=108.95  Aligned_cols=86  Identities=21%  Similarity=0.254  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++..+.++|.|...+...+++.|.+++++      |.+.+.++..+.++|.++++.+.+++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            34567788889999999999999999999987422      678999999999999999999999988899999999887


Q ss_pred             HHHHHHHHHHHH
Q 010840          131 AIAMGISNMLFF  142 (499)
Q Consensus       131 ~~~m~l~~i~f~  142 (499)
                      ++..++..+...
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            776665555433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.28  E-value=4.1e-09  Score=109.20  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++-.+.+++.|.+-|...+++.|.+++++      |.+.+.++..+.++|..+++.+.+++.+..||++.|.+.+
T Consensus        97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~  170 (390)
T PRK03545         97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG  170 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence            4456666778888888888999999999987432      5788999999999999999999999988899999999887


Q ss_pred             HHHHHHHHH
Q 010840          132 IAMGISNML  140 (499)
Q Consensus       132 ~~m~l~~i~  140 (499)
                      +..++..+.
T Consensus       171 ~~~~l~~~~  179 (390)
T PRK03545        171 GGALITLLL  179 (390)
T ss_pred             HHHHHHHHH
Confidence            766655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.28  E-value=2.4e-09  Score=108.62  Aligned_cols=265  Identities=14%  Similarity=0.034  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++..+.+++.|...|...++..|.+++++      |.+.++++..+.++|.++++.+++++.+..||+..|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            45678888889999999999999999999987532      688999999999999999999999998889999999888


Q ss_pred             HHHHHHHHHHHHhccccccccCC-CCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccc
Q 010840          131 AIAMGISNMLFFIGTPLYRHRLP-GGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  209 (499)
Q Consensus       131 ~~~m~l~~i~f~~g~~~~~~~~p-~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  209 (499)
                      ++..+++.+.....+..  ++++ +..+..+                    .                 ..  .   +..
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~-----------------~~--~---~~~  200 (365)
T TIGR00900       165 AVGFAISALLIVSVRIP--ELAASEIQALSN--------------------A-----------------VL--R---DTR  200 (365)
T ss_pred             HHHHHHHHHHHHhcccc--cCCCccccccch--------------------h-----------------HH--H---HHH
Confidence            77766665543322110  0000 0000000                    0                 00  0   000


Q ss_pred             cceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhch-hhHHHHHhhhcccccCeeecCC---cc
Q 010840          210 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFL-TLSVQQAYTMNTHMGKLKLPVT---CM  285 (499)
Q Consensus       210 d~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~-t~~~~qa~~m~~~i~g~~ip~~---~l  285 (499)
                                    ..        .++.++--.+..+.+...+++..+.... +.......+. .     +.++.   .+
T Consensus       201 --------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~  252 (365)
T TIGR00900       201 --------------EG--------IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-L-----GRGSTHYGWV  252 (365)
T ss_pred             --------------hH--------HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-h-----CCchHHHHHH
Confidence                          00        0001110111122222233333222222 1111111110 0     11222   22


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840          286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  365 (499)
Q Consensus       286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~  365 (499)
                      .....+..++..++..+    +.+|.       ...+-+..++++.++++.......                      .
T Consensus       253 ~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------------~  299 (365)
T TIGR00900       253 LAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVIGLAILVVGLTP----------------------P  299 (365)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHHHHHHHHHHhhc----------------------h
Confidence            33333333444444332    22332       222334445555555554443321                      1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +.++.+...++.+++.....+.......+..|++.||..+|++.....+|..+++.+...+
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2455666788999999999999999999999999999999999999999999988887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.28  E-value=9.4e-09  Score=106.68  Aligned_cols=79  Identities=11%  Similarity=0.040  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +...++++-.+.++|.|...++..+...|.+++++      |.+...++..+.++|..+|+.+++++.+..||+..|.++
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            34567777789999999999999999999886533      567888888999999999999999998889999988766


Q ss_pred             HHHHH
Q 010840          131 AIAMG  135 (499)
Q Consensus       131 ~~~m~  135 (499)
                      .+..+
T Consensus       185 ~~~~~  189 (399)
T PRK05122        185 MLLAL  189 (399)
T ss_pred             HHHHH
Confidence            55433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.26  E-value=8.1e-09  Score=107.55  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      +.+++...+.+++.+..-+...+...|.+++++      +.+...+.+...++|..+++.+.+++.++.+|++.|.+.++
T Consensus       102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~  175 (406)
T PRK15402        102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA  175 (406)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence            456667777888888888888888888886432      45667788888889999999999999888999999988777


Q ss_pred             HHHHHHHHH
Q 010840          133 AMGISNMLF  141 (499)
Q Consensus       133 ~m~l~~i~f  141 (499)
                      ..+++.+..
T Consensus       176 ~~~~~~~~~  184 (406)
T PRK15402        176 LAALSFFGL  184 (406)
T ss_pred             HHHHHHHHH
Confidence            777665533

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.25  E-value=5.3e-09  Score=105.12  Aligned_cols=260  Identities=19%  Similarity=0.231  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.+++.|...+...++..|.+++++      |...+++++.+.++|..+++.+.+++.+..+|+..|.+.+
T Consensus        87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4567788889999999999999999999998633      6789999999999999999999999998899999999888


Q ss_pred             HHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccc
Q 010840          132 IAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK  211 (499)
Q Consensus       132 ~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~  211 (499)
                      +..+++.+......             +....                                                
T Consensus       161 ~~~~~~~~~~~~~~-------------~~~~~------------------------------------------------  179 (352)
T cd06174         161 ILGLLLALLLLFLL-------------RLLLL------------------------------------------------  179 (352)
T ss_pred             HHHHHHHHHHHHHH-------------HHHHH------------------------------------------------
Confidence            87777766544321             00000                                                


Q ss_pred             eeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhh-hcccccCeeecCCcccchhH
Q 010840          212 AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPG  290 (499)
Q Consensus       212 a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~-m~~~i~g~~ip~~~l~~~n~  290 (499)
                                                        +.+....++..+............+ .+.+    .....++.....
T Consensus       180 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  221 (352)
T cd06174         180 ----------------------------------LALAFFLLSFGYYGLLTYLPLYLQEVLGLS----AAEAGLLLSLFG  221 (352)
T ss_pred             ----------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH
Confidence                                              0000011111111111111101100 0000    011223444555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHH
Q 010840          291 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW  369 (499)
Q Consensus       291 i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~-ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~w  369 (499)
                      +..++..++..++    .+|..       ..+ .+.++.++.+++++.....                       .+.++
T Consensus       222 ~~~~i~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~  267 (352)
T cd06174         222 LGGILGALLGGLL----SDRLG-------RRRLLLLIGLLLAALGLLLLALA-----------------------PSLAL  267 (352)
T ss_pred             HHHHHHHHHHHHH----HHHHH-------hhhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHH
Confidence            5555555555443    34422       122 4667777777777665543                       22566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccch
Q 010840          370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR  449 (499)
Q Consensus       370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~  449 (499)
                      .+...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+...+...        .+|         
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--------~~~---------  330 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT--------GGY---------  330 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCc---------
Confidence            778899999999999999999999999999999999999999999999999998765421        112         


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 010840          450 FDYLYWLLAVLSVINFCAF  468 (499)
Q Consensus       450 l~~~f~~la~l~~~~~~~~  468 (499)
                       ...|...+++.++..+++
T Consensus       331 -~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         331 -GGVFLILAALALLAALLL  348 (352)
T ss_pred             -chHHHHHHHHHHHHHHHh
Confidence             235666667666666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.23  E-value=6.6e-09  Score=107.83  Aligned_cols=83  Identities=11%  Similarity=0.013  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.+++.+. -|...+...|++++++      |.+...++..+.++|.++++.+.+++.+..+|+..|.+.+
T Consensus       107 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  179 (408)
T PRK09874        107 IWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA  179 (408)
T ss_pred             HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            44566666677777554 4777777888775322      5677888999999999999999999988899999998888


Q ss_pred             HHHHHHHHHH
Q 010840          132 IAMGISNMLF  141 (499)
Q Consensus       132 ~~m~l~~i~f  141 (499)
                      +..+++.+..
T Consensus       180 ~~~~~~~~~~  189 (408)
T PRK09874        180 SVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHH
Confidence            7766665533

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.22  E-value=1.6e-08  Score=105.03  Aligned_cols=82  Identities=17%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.+.++..+.+++.|...|...+...|.+++++      |.+...+++.+.++|.++++.++.++.+..+|+..|.+.+
T Consensus       103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  176 (406)
T PRK11551        103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG  176 (406)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence            3466677788899999999999999999986432      6788999999999999999999988888899999998877


Q ss_pred             HHHHHHHH
Q 010840          132 IAMGISNM  139 (499)
Q Consensus       132 ~~m~l~~i  139 (499)
                      +..++..+
T Consensus       177 ~~~~~~~~  184 (406)
T PRK11551        177 VGPLLLVP  184 (406)
T ss_pred             HHHHHHHH
Confidence            66555544

>PRK10504 putative transporter; Provisional

Probab=99.20  E-value=3.7e-08  Score=104.66  Aligned_cols=86  Identities=15%  Similarity=0.082  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      ...++++..+.++|.|..-|...+.+.|.++++      ++...+.++....++|..+++.+.+++.++.||++.|.+..
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~  171 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI  171 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence            345677788999999999999888888887632      25678899999999999999999999998999999999877


Q ss_pred             HHHHHHHHHHHh
Q 010840          132 IAMGISNMLFFI  143 (499)
Q Consensus       132 ~~m~l~~i~f~~  143 (499)
                      ....++.+....
T Consensus       172 ~~~~l~~~~~~~  183 (471)
T PRK10504        172 PVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHH
Confidence            666655554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=7.4e-09  Score=108.80  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH---HHHhhccchHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAFG  128 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~---~~i~~~~g~~~~F~  128 (499)
                      .+.++++..+.++|.|..-+...++++|.+++++      |.....+++.+.++|.++++.++   ..+.+..+|++.|.
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~  200 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG  200 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence            3577888899999999999999999999987543      57789999999999999999998   66667789999999


Q ss_pred             HHHHHHHHHHHHHH
Q 010840          129 ALAIAMGISNMLFF  142 (499)
Q Consensus       129 i~~~~m~l~~i~f~  142 (499)
                      +.++..++.++..+
T Consensus       201 ~~~~~~~~~~~~~~  214 (481)
T TIGR00879       201 LQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHHHHHHHHHHHh
Confidence            87666655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.20  E-value=2.8e-08  Score=102.92  Aligned_cols=76  Identities=11%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +...++++-.+.++|.+..-|...+.+.|.+++++      |.++.+++..+.++|..+++.+++++.+.+||+..+.+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            45667777888999999888888888888876432      577899999999999999999999998889998877654


Q ss_pred             HH
Q 010840          131 AI  132 (499)
Q Consensus       131 ~~  132 (499)
                      .+
T Consensus       185 ~~  186 (392)
T PRK12382        185 MV  186 (392)
T ss_pred             HH
Confidence            44

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.19  E-value=3e-08  Score=106.52  Aligned_cols=289  Identities=16%  Similarity=0.121  Sum_probs=173.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840            4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE   83 (499)
Q Consensus         4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~   83 (499)
                      ++.+-++.++..+++.+.+...                       ..+.+.+++...++++|.++..|.-++.+.+..++
T Consensus        78 li~~~~~~~~~~~~L~~l~~~~-----------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~  134 (524)
T PF05977_consen   78 LILSQLLRALVALLLAVLAFFG-----------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK  134 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4455566666666666554421                       24567888888999999999999999999999986


Q ss_pred             CChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHH
Q 010840           84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ  163 (499)
Q Consensus        84 ~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~  163 (499)
                      ++      ..++..+.-...|+.-++||.++|.+-...|-...|++.+++.+++++.+...++..   +++..|-++..+
T Consensus       135 ~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~  205 (524)
T PF05977_consen  135 ED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFS  205 (524)
T ss_pred             hh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhh
Confidence            44      567889999999999999999999987788999999999998888766554433221   111111111110


Q ss_pred             HHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhh
Q 010840          164 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL  243 (499)
Q Consensus       164 vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~  243 (499)
                      -+...+|                                     ++                         ..-|.+..+
T Consensus       206 ~l~~G~r-------------------------------------yv-------------------------~~~~~l~~~  223 (524)
T PF05977_consen  206 ALREGLR-------------------------------------YV-------------------------RSSPPLRSV  223 (524)
T ss_pred             hHHHHHH-------------------------------------HH-------------------------hcchHHHHH
Confidence            0001100                                     00                         000111111


Q ss_pred             hhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh
Q 010840          244 VPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ  322 (499)
Q Consensus       244 l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~  322 (499)
                      +   +...++.....-....+...+. .++.       .+..+..+..  ..-..-+...++.|..+|.      .+..+
T Consensus       224 l---~~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~~yGll~a--~~gvGai~Gal~~~~l~~~------~~~~~  285 (524)
T PF05977_consen  224 L---LRSFLFNLFASAVWALLPLFARDVLGG-------GASGYGLLLA--AFGVGAILGALLLPRLRRR------LSSRR  285 (524)
T ss_pred             H---HHHHHHHHhhhHHHHhhhHHHHHHhCC-------cHHHHHHHHH--HHHHHHHHHHHHHHHhhcc------cCcch
Confidence            1   1111111111111111222222 2221       1222222221  1112233334444444442      34444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  402 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~  402 (499)
                      -+..+.++.+++++..++.                       -+.|..++..++.|++...........+-..+|+++||
T Consensus       286 lv~~~~~~~a~~~~~lal~-----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G  342 (524)
T PF05977_consen  286 LVLLASLLFALALLLLALS-----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG  342 (524)
T ss_pred             hhHHHHHHHHHHHHHHhcc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence            5667777777776666543                       33566677889999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          403 IGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ..++++......+..+|+.+.+.+.
T Consensus       343 Rv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  343 RVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998777666666666665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.19  E-value=4.6e-09  Score=106.12  Aligned_cols=83  Identities=25%  Similarity=0.370  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      +.++++..+.++|.|...+...+++.|.+++++      |...+.++..+.++|.++++.+++++.++.+|++.|.+.++
T Consensus        86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             HHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            478888899999999999999999999998743      67899999999999999999999999988999999999998


Q ss_pred             HHHHHHHHH
Q 010840          133 AMGISNMLF  141 (499)
Q Consensus       133 ~m~l~~i~f  141 (499)
                      ..+++.+..
T Consensus       160 ~~~~~~il~  168 (352)
T PF07690_consen  160 LSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhhhhhH
Confidence            888887643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.17  E-value=1.3e-08  Score=105.42  Aligned_cols=278  Identities=10%  Similarity=0.062  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++..+.+.+.+..-|...++..+ ++    +   ++...+.+.....++|..+++.+++++.++.||+..|.+.
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~----~---~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ----K---QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH----H---HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            34566666666777777777877776532 21    1   2466789999999999999999999999999999999876


Q ss_pred             HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840          131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  210 (499)
Q Consensus       131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld  210 (499)
                      ++..++.++.+.. ++.   .+|+++                    .++..                    ..       
T Consensus       165 ~~~~~~~~~~~~~-~~~---~~~~~~--------------------~~~~~--------------------~~-------  193 (382)
T TIGR00902       165 TAGLAFMLIGFLI-KPT---IPPKDA--------------------IPEDE--------------------SQ-------  193 (382)
T ss_pred             HHHHHHHHHHHHc-CCC---CCCCcc--------------------ccccc--------------------cc-------
Confidence            6553333332221 111   011100                    00000                    00       


Q ss_pred             ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---cccc
Q 010840          211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---CMPV  287 (499)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~l~~  287 (499)
                                    ++     ++..+..+--++..+.+...+++..+.+..+....+..+  .     +.++.   .+..
T Consensus       194 --------------~~-----~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~-----g~s~~~~g~l~~  247 (382)
T TIGR00902       194 --------------GD-----SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--A-----GISASATGLLWG  247 (382)
T ss_pred             --------------cc-----hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----CCCHhHHHHHHH
Confidence                          00     000001000122233344444555565655544333222  1     12232   2233


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchH
Q 010840          288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA  367 (499)
Q Consensus       288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~  367 (499)
                      ++.+..++..++.++    +.+|       .++.+-+.+|.++.++.++..+..                       .++
T Consensus       248 ~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-----------------------~~~  293 (382)
T TIGR00902       248 IGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAI-----------------------EAF  293 (382)
T ss_pred             HHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-----------------------hhH
Confidence            344444444443333    3444       455566778888888887666543                       335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHH-HHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840          368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  446 (499)
Q Consensus       368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~-l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln  446 (499)
                      ++++...+++++.+.+..+....++.+. |++.++.++|++. ...++|..+++.+.+.+..               .. 
T Consensus       294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---------------~~-  356 (382)
T TIGR00902       294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---------------TL-  356 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hc-
Confidence            6666667999999999999999999988 9999999999985 5678888888877765442               11 


Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 010840          447 TGRFDYLYWLLAVLSVINFCA  467 (499)
Q Consensus       447 ~~~l~~~f~~la~l~~~~~~~  467 (499)
                       +  ...|+..++++++.+++
T Consensus       357 -g--~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       357 -G--AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             -c--HHHHHHHHHHHHHHHHH
Confidence             1  13577777777765443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.16  E-value=5.3e-09  Score=111.03  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +.++++...++.|++.....+.....+.+..|++.++..+|++.....+|..+|+.+...+.
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            35666667888999999999999999999999999999999999999999999998877543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=1.3e-08  Score=108.08  Aligned_cols=81  Identities=11%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA  131 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i~~  131 (499)
                      ..+++.-.+.++|.|..-|.......+.+++++      |..+..+++.+.++|..+++.+++++.+.. ||+..|.+.+
T Consensus       132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~  205 (465)
T TIGR00894       132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG  205 (465)
T ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence            456777788999999999999999998887422      678999999999999999999999998884 9999998877


Q ss_pred             HHHHHHHH
Q 010840          132 IAMGISNM  139 (499)
Q Consensus       132 ~~m~l~~i  139 (499)
                      +..++..+
T Consensus       206 ~~~~~~~~  213 (465)
T TIGR00894       206 IVGCAWSL  213 (465)
T ss_pred             HHHHHHHH
Confidence            76554444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.13  E-value=3.3e-08  Score=103.74  Aligned_cols=267  Identities=13%  Similarity=0.094  Sum_probs=144.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-------hccch
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGW  123 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-------~~~g~  123 (499)
                      +...+++...+..++.+.+.....++..+..++  ++|   |.+...+.....++|++++..+.+.+.       +..||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~  172 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PRE---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW  172 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence            444555556667888888888888988887654  333   577888888889999888766654443       24689


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccc
Q 010840          124 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT  203 (499)
Q Consensus       124 ~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  203 (499)
                      +..|.+.++..++..++.....+.    +++..                    +....                      
T Consensus       173 ~~~~~i~~~l~~~~~~~~~~~~~e----~~~~~--------------------~~~~~----------------------  206 (437)
T TIGR00792       173 FMFALVLALIGVVSLIICFFGTKE----RYSEI--------------------PKNIE----------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEe----cCCCC--------------------Ccccc----------------------
Confidence            988887777666555443332211    11000                    00000                      


Q ss_pred             cccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC
Q 010840          204 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT  283 (499)
Q Consensus       204 ~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~  283 (499)
                      .+.+..                      +..++..+...+..+.+...+.+..+....+....+.   ...++. .--..
T Consensus       207 ~~~~~~----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~  260 (437)
T TIGR00792       207 KKLSLK----------------------QIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF---TYVLGD-PELFS  260 (437)
T ss_pred             cCCCHH----------------------HHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE---eeecCC-hHHHH
Confidence            000000                      0001110001111122223333333222111111111   111110 00011


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++..+..+..++..|+..+    +.+|.       ...+-+.+|.++.+++++...+..                     
T Consensus       261 ~~~~~~~i~~ii~~~~~~~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~---------------------  308 (437)
T TIGR00792       261 YMGSIAIVAGLIGVLLFPR----LVKKF-------GRKILFAGGILLMVLGYLIFFFAG---------------------  308 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            2333344445555555444    34443       223446677777776665544321                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++.+...++.+++.....+....+..+.+|       ++.+|.++|++.+...+|..+++.+...+.
T Consensus       309 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       309 -SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             123445556788899998889998888888765       667899999999988888888888877654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.12  E-value=4.7e-09  Score=115.26  Aligned_cols=277  Identities=10%  Similarity=-0.064  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCCh
Q 010840            7 CCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK   86 (499)
Q Consensus         7 ~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~   86 (499)
                      .++.++++.+.+.+.++ +..                   +...+.....++++.++++.+|.+++.+++.++|.+..+ 
T Consensus        57 Il~~~ii~~lG~~llai-~a~-------------------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~-  115 (654)
T TIGR00926        57 ILYLSIVYVVGHALLSF-GAI-------------------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE-  115 (654)
T ss_pred             HHHHHHHHHHHHHHHHh-ccC-------------------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC-
Confidence            44556666666666655 221                   124445667778899999999999999999999998755 


Q ss_pred             hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHH-------HHHHHHHHHHHHHHHHHhccccccccCCCCChH
Q 010840           87 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGS-------AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL  158 (499)
Q Consensus        87 ~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~-------~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl  158 (499)
                        .+++++.+++|||..+.+.+. .+++..+..... +..       -++..++.+++.++.++.+...++..++.+.+.
T Consensus       116 --~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g  192 (654)
T TIGR00926       116 --ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG  192 (654)
T ss_pred             --ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence              266678999999999999985 455555544443 332       234788888888889999988887777766655


Q ss_pred             HHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccc--cccchhhH
Q 010840          159 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEE  236 (499)
Q Consensus       159 ~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~--~~~~~ve~  236 (499)
                      ..+.++.......++.                        +..+      .+...         ...|-.  ....++++
T Consensus       193 s~l~~v~~vi~~a~~~------------------------~~~~------~~~~~---------~~~~ld~a~~~~~~~~  233 (654)
T TIGR00926       193 NIVSKVIKCIVTALRK------------------------RFST------RSEHW---------PLHWLDYAKDKHDIRM  233 (654)
T ss_pred             cHHHHHHHHHHHHHHH------------------------hhcc------CCccc---------chhHHHHhccccccch
Confidence            5566665544332110                        0000      11100         012211  23444567


Q ss_pred             hHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010840          237 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR  316 (499)
Q Consensus       237 ~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~  316 (499)
                      ++...++++++...+.+|+.+.|.......|+.++++..+.+...+...+.++++-.++++++...+.+|+..++.++  
T Consensus       234 V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~--  311 (654)
T TIGR00926       234 IRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC--  311 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc--
Confidence            999999999999999999999999999999999999987777777778999999999999999999999999998654  


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010840          317 GASQLQRVGIGLAVSILSVIWAGIFERYRRNYA  349 (499)
Q Consensus       317 ~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~  349 (499)
                       -.+++++.-+.+.++++++.+++++..+.+.-
T Consensus       312 -~~~ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       312 -GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             57889999999999999999999988766543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.11  E-value=6.3e-08  Score=102.92  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccc
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHG  122 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g  122 (499)
                      ....++++=.+.++|.|+.-|...++++|.++++.      |.....++-.+..+|.++++.++.++.        +..|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            34566677788999999999999999999998532      567788888888999998877765442        3579


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 010840          123 WGSAFGALAIAMGISNMLF  141 (499)
Q Consensus       123 ~~~~F~i~~~~m~l~~i~f  141 (499)
                      |++.|.+.++..++.++..
T Consensus       193 Wr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999988777666655433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.11  E-value=3.7e-08  Score=101.85  Aligned_cols=260  Identities=11%  Similarity=0.076  Sum_probs=145.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.+++...+.+++.+...|...++..|. .++       +...+.+.....++|..+|+.+++++.+++||+..|.+.
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~-------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~  164 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQ-------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL  164 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hhh-------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            355666677778888898999888877764 211       345677778888999999999999999999999999877


Q ss_pred             HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840          131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  210 (499)
Q Consensus       131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld  210 (499)
                      ++..++.++... .++   +++|++++-           +      +  .                     +...     
T Consensus       165 ~~~~~~~~~~~~-~~~---~~~~~~~~~-----------~------~--~---------------------~~~~-----  195 (382)
T PRK11128        165 TAGVASMLLGQL-LRP---TIMPQGESR-----------Q------Q--E---------------------SAGW-----  195 (382)
T ss_pred             HHHHHHHHHHHH-ccC---CCCCccccc-----------c------c--c---------------------cccc-----
Confidence            765554443322 111   111111000           0      0  0                     0000     


Q ss_pred             ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhH
Q 010840          211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPG  290 (499)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~  290 (499)
                                   ..        ..+..+--++..+.+...+.+..+.+..+.+....++...+    +-..+.+..++.
T Consensus       196 -------------~~--------~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~~~~  250 (382)
T PRK11128        196 -------------PA--------WKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGYLWSLGV  250 (382)
T ss_pred             -------------ch--------HHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHHHHHHHH
Confidence                         00        00111111122223333333444434334333222221110    001123334444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHH
Q 010840          291 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL  370 (499)
Q Consensus       291 i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wl  370 (499)
                      +..++...+.++    +.+|       .+..+.+.+++++.+++++..+..                       .+.++.
T Consensus       251 ~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~  296 (382)
T PRK11128        251 VAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGST-----------------------TALPWL  296 (382)
T ss_pred             HHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHhh-----------------------hhHHHH
Confidence            444444444443    3344       344455777777777766554432                       235666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHH-HHhHHHHHHHhhhhhhhc
Q 010840          371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIK  427 (499)
Q Consensus       371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~-l~~a~g~~l~~~l~~~v~  427 (499)
                      +...++.++++.+..+....++.++.|. .++.++++.. +..++|..+|+.+.+.+.
T Consensus       297 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        297 IVIQILHCGTFTVCHLAAMRYIAARPGS-EVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778899999999999999999887544 4588888876 555666666666665543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.10  E-value=9.4e-08  Score=98.08  Aligned_cols=85  Identities=21%  Similarity=0.327  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.++|.+...+...+++.|.+++++      |.+.+.+++...++|..+++.+.+++.++.+|+..|.+.+
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  166 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS  166 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4567777888999999999999999999887432      5788999999999999999999999988899999998877


Q ss_pred             HHHHHHHHHHH
Q 010840          132 IAMGISNMLFF  142 (499)
Q Consensus       132 ~~m~l~~i~f~  142 (499)
                      +..++..+...
T Consensus       167 ~~~~~~~~~~~  177 (385)
T TIGR00710       167 LAGILLSALIF  177 (385)
T ss_pred             HHHHHHHHHHH
Confidence            77666655444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.09  E-value=2.7e-08  Score=117.30  Aligned_cols=284  Identities=12%  Similarity=0.001  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++..+.++|.+++.|...+++.|.+++++      +..+..+..++.++|.++|+.+++++.+..||+..|.+.
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~  180 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL  180 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            45678889999999999999999999999998643      678999999999999999999999998889999998444


Q ss_pred             HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840          131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  210 (499)
Q Consensus       131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld  210 (499)
                      ++..++++++.+.-    ...+++....+                 +. .                          +...
T Consensus       181 ~~~~~~~~~~~~~~----~~~~~~~~~~~-----------------~~-~--------------------------~~~~  212 (1140)
T PRK06814        181 MGIAVLGWLASLFI----PKTGNAAPDLK-----------------ID-R--------------------------NIIR  212 (1140)
T ss_pred             HHHHHHHHHHHhhC----CCCCCCCCCCe-----------------ec-c--------------------------chHH
Confidence            44333333322211    11111100000                 00 0                          0000


Q ss_pred             ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecC---Ccccc
Q 010840          211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV---TCMPV  287 (499)
Q Consensus       211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~---~~l~~  287 (499)
                      ...          ..        ...+++--.+..+.+...+++.+.....+.+..+...   .+   +.++   .++.+
T Consensus       213 ~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---g~~~~~~g~~~~  268 (1140)
T PRK06814        213 STI----------TL--------LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TL---GGDENVATLFLA  268 (1140)
T ss_pred             HHH----------HH--------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---Hc---CCchHHHHHHHH
Confidence            000          00        0001000011112222233333333332322222211   11   1122   23445


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhcCCcccccCCCCcch
Q 010840          288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY-RRNYAISHGYEFSFLTAMPDLS  366 (499)
Q Consensus       288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~-r~~~~~~~g~~~~~~~~~~~~s  366 (499)
                      ...+..++...+..++    .++.       ...+.+.+|.++.+++.+.+++.... ......-... ..  .... .+
T Consensus       269 ~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~-~~  333 (1140)
T PRK06814        269 VFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI-LV--FLSK-RH  333 (1140)
T ss_pred             HHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccch-hh--hhcc-cc
Confidence            5555555555555443    2221       12233455555555444433321000 0000000000 00  0001 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .|+++..+++.|++..+..+....++.+.+|++++|.++|++.+...+|..+++.+...+.
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778899999999999999999999999999999999999999999999888877654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.07  E-value=6.7e-08  Score=98.66  Aligned_cols=262  Identities=11%  Similarity=0.073  Sum_probs=147.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc--------
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--------  122 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g--------  122 (499)
                      +.+.++....+.+++.+...+...+++.|.+++++      |..+..+...+.++|.++++.+++++..+.|        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            34445545556678888889999999999996432      5788899999999999999999998887788        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccc
Q 010840          123 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH  202 (499)
Q Consensus       123 ~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  202 (499)
                      |+..|.+.++..+++++..+...|.-.+.++++++.   .    ...+                                
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~---~----~~~~--------------------------------  196 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPL---T----QAVL--------------------------------  196 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhH---H----HHHH--------------------------------
Confidence            999999888877766554332222100000000000   0    0000                                


Q ss_pred             ccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecC
Q 010840          203 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV  282 (499)
Q Consensus       203 ~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~  282 (499)
                                           .++     .++-..|...++..+.+...++...+.+..+.+..+..++       +.++
T Consensus       197 ---------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------g~~~  243 (356)
T TIGR00901       197 ---------------------KPI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-------GFSK  243 (356)
T ss_pred             ---------------------HHH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCH
Confidence                                 000     0000001111233333344445555555444444333221       1233


Q ss_pred             Ccc---cchhH-HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc
Q 010840          283 TCM---PVFPG-LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF  358 (499)
Q Consensus       283 ~~l---~~~n~-i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~  358 (499)
                      +..   ..... +..++..++..    .+.+|       .+..+.+.+++++.+++..........    ....+     
T Consensus       244 ~~~g~~~~~~~~~~~~~g~~~~g----~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~-----  303 (356)
T TIGR00901       244 EEIALVAKINGLLGAILGGLIGG----IIMQP-------LNILYALLLFGIVQALTNAGFVWLASN----GHHDG-----  303 (356)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHH----HHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHhc----Ccccc-----
Confidence            322   22222 12222222222    22344       344455677777766665544433110    00000     


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhH
Q 010840          359 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG  413 (499)
Q Consensus       359 ~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a  413 (499)
                        ..+ .+.++++...++.++++.+..+....+..+.+|+++||.++|++....+
T Consensus       304 --~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       304 --ITF-PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             --ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              001 2345566778899999999999999999999999999999999876543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=4.7e-08  Score=104.86  Aligned_cols=86  Identities=17%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++-.+.++|.|++.|...+.+.+.+.++  +   +|.+++.++....++|..+|+.+++++.++.||++.|.+.
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~--~---~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~  167 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEE--K---QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN  167 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence            3456777888999999999998888887777532  2   2678999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 010840          131 AIAMGISNMLF  141 (499)
Q Consensus       131 ~~~m~l~~i~f  141 (499)
                      ....++.++..
T Consensus       168 ~~~~~~~~~l~  178 (495)
T PRK14995        168 VPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHH
Confidence            66655554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.06  E-value=4.6e-08  Score=104.03  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      ...++++-.+.++|.|...|...+++.|.++++      +|.+++.+++.+.++|..+++.+++++.+++||++.|.+.+
T Consensus        90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~  163 (485)
T TIGR00711        90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV  163 (485)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence            456777888899999999999999999998742      26788999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHH
Q 010840          132 IAMGISNMLF  141 (499)
Q Consensus       132 ~~m~l~~i~f  141 (499)
                      ...++.++..
T Consensus       164 ~~~~~~~~~~  173 (485)
T TIGR00711       164 PIGIIVVVVA  173 (485)
T ss_pred             HHHHHHHHHH
Confidence            6555554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.05  E-value=1.4e-07  Score=98.76  Aligned_cols=76  Identities=21%  Similarity=0.401  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++-.+.++|.|+.-+...++..|.++++.      |.....++..+.++|.++++.+.+++.+..||+..|.++.
T Consensus       106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            4567777889999999999999999999987432      5678888999999999999999999888899999998755


Q ss_pred             HH
Q 010840          132 IA  133 (499)
Q Consensus       132 ~~  133 (499)
                      +.
T Consensus       180 ~~  181 (426)
T PRK12307        180 LP  181 (426)
T ss_pred             HH
Confidence            43

>TIGR00895 2A0115 benzoate transport

Probab=99.02  E-value=1.4e-07  Score=96.76  Aligned_cols=82  Identities=20%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.++|.|...+...++..|.+++++      |...++++..+.++|..+++.+.+++.++.||+..|.+.+
T Consensus       105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  178 (398)
T TIGR00895       105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG  178 (398)
T ss_pred             hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence            3467778889999999999999999999987422      6788999999999999999999999988899999998876


Q ss_pred             HHHHHHHH
Q 010840          132 IAMGISNM  139 (499)
Q Consensus       132 ~~m~l~~i  139 (499)
                      +..++..+
T Consensus       179 ~~~~~~~~  186 (398)
T TIGR00895       179 IAPLLLLL  186 (398)
T ss_pred             hHHHHHHH
Confidence            54444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.02  E-value=3e-07  Score=96.95  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.+++...+.+++.|..-+...+.+.+.+++++      |.....+++.+.++|..+++.+.+++.+.+||++.|.+.+
T Consensus       111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~  184 (434)
T PRK11663        111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAG  184 (434)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3445555566778888888888999999987432      6788999999999999999999999988899999998877


Q ss_pred             HHHHHH
Q 010840          132 IAMGIS  137 (499)
Q Consensus       132 ~~m~l~  137 (499)
                      +..++.
T Consensus       185 i~~~~~  190 (434)
T PRK11663        185 IIAIVV  190 (434)
T ss_pred             HHHHHH
Confidence            655443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.02  E-value=4.6e-07  Score=93.02  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      +.+++...+.+++.+...+...++..|.+++++      |.+.+++++...++|..+++.+.+++.+..+|+..|.+.++
T Consensus        80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  153 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL  153 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            456667778899999999999999999886432      57889999999999999999999999888999999988777


Q ss_pred             HHHHHHHHH
Q 010840          133 AMGISNMLF  141 (499)
Q Consensus       133 ~m~l~~i~f  141 (499)
                      ..++..+..
T Consensus       154 ~~~~~~~~~  162 (377)
T PRK11102        154 AAILAAALV  162 (377)
T ss_pred             HHHHHHHHH
Confidence            666655433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.02  E-value=1.5e-07  Score=110.98  Aligned_cols=63  Identities=13%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME  120 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~  120 (499)
                      .+.++++..+.+++.|.+-|...+++.|.+++++      |..+++++..+.++|.++|+.+++++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888889999999999999999999997643      67899999999999999999999998764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.01  E-value=4e-07  Score=93.17  Aligned_cols=84  Identities=13%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  133 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~  133 (499)
                      .+++.-.+.+.+.+..-|...++..|..++++ |   .+.....+.+...++|..+++.+++++.+..||++.|.+.++.
T Consensus        89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~  164 (375)
T TIGR00899        89 LLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA  164 (375)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence            34444444555556666777777666654221 1   1122357778888999999999999998889999999988877


Q ss_pred             HHHHHHHH
Q 010840          134 MGISNMLF  141 (499)
Q Consensus       134 m~l~~i~f  141 (499)
                      .++..+..
T Consensus       165 ~~~~~~~~  172 (375)
T TIGR00899       165 FVLCGVLV  172 (375)
T ss_pred             HHHHHHHH
Confidence            66665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.00  E-value=5e-07  Score=96.88  Aligned_cols=85  Identities=13%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGA  129 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~-~~g~~~~F~i  129 (499)
                      +.+.+.+...+.+++.+...+...++..|.+++++      |.++..+.-.+.++|.++++.+..++.+ ..||+..|.+
T Consensus       106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i  179 (491)
T PRK11010        106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL  179 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence            45667767778888999999999999999987432      5677888889999999999999999887 4699999998


Q ss_pred             HHHHHHHHHHHH
Q 010840          130 LAIAMGISNMLF  141 (499)
Q Consensus       130 ~~~~m~l~~i~f  141 (499)
                      .++.+++..+..
T Consensus       180 ~a~l~ll~~l~~  191 (491)
T PRK11010        180 MAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            887766665433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.00  E-value=4.7e-07  Score=94.26  Aligned_cols=82  Identities=16%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.+++.-.+.+++.|...|...++..|.+++++      |.....+++.+.|+|.++++.+.+++.+..||++.|.+.
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~  180 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA  180 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            35677778889999999999999999999986432      577899999999999999999999999889999999887


Q ss_pred             HHHHHHHH
Q 010840          131 AIAMGISN  138 (499)
Q Consensus       131 ~~~m~l~~  138 (499)
                      ++..++.+
T Consensus       181 ~~l~~~~~  188 (394)
T PRK10213        181 AVMGVLCI  188 (394)
T ss_pred             HHHHHHHH
Confidence            76555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.99  E-value=6.7e-07  Score=99.74  Aligned_cols=81  Identities=11%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  402 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~  402 (499)
                      -+.+++++.+++++..++.                       .+.++++...++.++......+....++.+..|.+.|+
T Consensus       627 ~l~~~~~lsai~~ll~~~~-----------------------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg  683 (742)
T TIGR01299       627 MLAGSMVLSCISCFFLSFG-----------------------NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA  683 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3667777777777665543                       12344455556777777778888999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          403 IGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      ..+|+......+|..+|+.++..+
T Consensus       684 ta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       684 TAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.99  E-value=6.7e-07  Score=92.61  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      ..++++..+.+++.|...+...++..|.+++++      |.+..++++...++|..+++.+.+++.+..||+..|.+.++
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~  165 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA  165 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence            455666677888888888888889998887432      67888999999999999999999998888999999988777


Q ss_pred             HHHHHHHH
Q 010840          133 AMGISNML  140 (499)
Q Consensus       133 ~m~l~~i~  140 (499)
                      ..++..+.
T Consensus       166 ~~~i~~~~  173 (392)
T PRK10473        166 MGILVLLL  173 (392)
T ss_pred             HHHHHHHH
Confidence            66655543

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.96  E-value=8.2e-07  Score=92.24  Aligned_cols=69  Identities=13%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             CCccchhhhhhccCCCCChhhhhhhhhhH-hHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010840           68 GIRPCVSSFGADQFDERSKDYKTHLDRFF-NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  141 (499)
Q Consensus        68 ~~kp~~~a~~~dq~~~~~~~~~~~~~~~f-~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f  141 (499)
                      ...|...++..|..++++ |    ....+ .+...+.++|..+++.+++++.++.||+..|.+.++..++..+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  190 (393)
T PRK15011        121 TANPQMFALAREHADKTG-R----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV  190 (393)
T ss_pred             hhHHHHHHHHHHHhhhcc-c----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            456666666666554221 1    12233 588889999999999999999988999999988777665554433

>TIGR00898 2A0119 cation transport protein

Probab=98.95  E-value=9.4e-07  Score=94.78  Aligned_cols=82  Identities=11%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.++|.|+..+...+++.|.++++.      |.....++..+.++|.++++.++.++.+   |++.|.+.+
T Consensus       180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~  250 (505)
T TIGR00898       180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVS  250 (505)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence            4567778889999999999999999999997533      4567777788888999999888777754   999998887


Q ss_pred             HHHHHHHHHHH
Q 010840          132 IAMGISNMLFF  142 (499)
Q Consensus       132 ~~m~l~~i~f~  142 (499)
                      +..++..+..+
T Consensus       251 i~~~~~~~~~~  261 (505)
T TIGR00898       251 LPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHH
Confidence            77666555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.94  E-value=1.1e-06  Score=91.39  Aligned_cols=76  Identities=13%  Similarity=0.094  Sum_probs=61.2

Q ss_pred             HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010840           57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  136 (499)
Q Consensus        57 ~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l  136 (499)
                      +...+.++|.|++.|...+++.|.+++++      |.++..+.....++|.++|+.+++++.+. .|...|.+.+...++
T Consensus        93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~  165 (393)
T PRK11195         93 LAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLL  165 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34567899999999999999999998532      67889999999999999999999999764 577777776665554


Q ss_pred             HHH
Q 010840          137 SNM  139 (499)
Q Consensus       137 ~~i  139 (499)
                      +.+
T Consensus       166 ~~~  168 (393)
T PRK11195        166 AAL  168 (393)
T ss_pred             HHH
Confidence            443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.94  E-value=7.2e-07  Score=93.47  Aligned_cols=83  Identities=14%  Similarity=0.070  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      ...++++-.+.++|.|..-+...+...|.+++++      +.+...++..+.++|..+|+.+++++.++.||++.|.+.+
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4566777788888887665666667778877432      4677999999999999999999999988889999998887


Q ss_pred             HHHHHHHHH
Q 010840          132 IAMGISNML  140 (499)
Q Consensus       132 ~~m~l~~i~  140 (499)
                      +..+++++.
T Consensus       178 ~~~~i~~~~  186 (413)
T PRK15403        178 VMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHH
Confidence            776666553

>PRK09848 glucuronide transporter; Provisional

Probab=98.93  E-value=4.6e-07  Score=95.83  Aligned_cols=88  Identities=8%  Similarity=0.032  Sum_probs=66.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      +..+-+.+|.++.+++.+...+..                    . .+.++.+...++.++|+.+..+...++..+.+|+
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~--------------------~-~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~  350 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVS--------------------V-WSLPVALVALAIASIGQGVTMTVMWALEADTVEY  350 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcC--------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            444557778877777765544320                    1 3456666678899999999999999999998886


Q ss_pred             h-------hhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          399 A-------MKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       399 ~-------mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +       .+|.++|++.+..-+|..+|+.+...+-
T Consensus       351 ~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        351 GEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             hHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4       5699999999999999998888776654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.93  E-value=1.6e-06  Score=91.83  Aligned_cols=82  Identities=11%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      .+.+++...+.+++.|...|.......+.+++++      |....++++.+.++|+ +.++++...+....||++.|.+.
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~  193 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMP  193 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            4566667778888899888888888888886422      5778899999999986 55665544443345999999987


Q ss_pred             HHHHHHHHH
Q 010840          131 AIAMGISNM  139 (499)
Q Consensus       131 ~~~m~l~~i  139 (499)
                      ++..++..+
T Consensus       194 ~~~~~~~~~  202 (452)
T PRK11273        194 AFAAILVAL  202 (452)
T ss_pred             HHHHHHHHH
Confidence            776655433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.92  E-value=2.5e-07  Score=94.08  Aligned_cols=83  Identities=13%  Similarity=0.077  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.++|.|..-+...+...+.++++       |.....++..+.++|.++++.+.+.+.+..||++.|.+.+
T Consensus        91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~  163 (377)
T TIGR00890        91 LAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMG  163 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHH
Confidence            456667777888888887777777777666421       4678899999999998876666666667789999999887


Q ss_pred             HHHHHHHHHH
Q 010840          132 IAMGISNMLF  141 (499)
Q Consensus       132 ~~m~l~~i~f  141 (499)
                      +..++..+..
T Consensus       164 ~~~~~~~~~~  173 (377)
T TIGR00890       164 IIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHH
Confidence            7766655433

>PRK11043 putative transporter; Provisional

Probab=98.91  E-value=1.5e-06  Score=90.29  Aligned_cols=84  Identities=14%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.++|.+...+...++..|.+++++      +.+.++......++|..+++.+++++.+.+||+..|.+.+
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            3456666777788888777777888888887432      4567788888889999999999999998999999998877


Q ss_pred             HHHHHHHHHH
Q 010840          132 IAMGISNMLF  141 (499)
Q Consensus       132 ~~m~l~~i~f  141 (499)
                      +..++..+..
T Consensus       168 ~~~~~~~~~~  177 (401)
T PRK11043        168 AITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHH
Confidence            7666555433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.91  E-value=3.7e-07  Score=93.47  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWG  124 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~  124 (499)
                      ..++++..+.++|.|...+...+++.|.+++++      |.....++..+.++|.++++.+...+.        +..+|+
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            356777788899999999999999999887533      567888999999999999988776653        357899


Q ss_pred             HHHHHHHHHHHHHHH
Q 010840          125 SAFGALAIAMGISNM  139 (499)
Q Consensus       125 ~~F~i~~~~m~l~~i  139 (499)
                      +.|.+.++..+++.+
T Consensus       171 ~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       171 IPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.90  E-value=1.2e-06  Score=90.45  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  127 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F  127 (499)
                      .+.+.++..+.++|.|...|...+...|..+++      +|.+.+++++.+.|+|..+|+.+.+++.+...+...+
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         94 FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            456777778889999988888777777776532      2578899999999999999999999987654333333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.89  E-value=4.9e-06  Score=86.66  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  129 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i  129 (499)
                      +.+.+++...+.++..+...|...++..|.+++++      |.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            44555555566778888899999999999976432      57788888889999999999988888775 499999998


Q ss_pred             HHHHHHHHHHH
Q 010840          130 LAIAMGISNML  140 (499)
Q Consensus       130 ~~~~m~l~~i~  140 (499)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88776655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.87  E-value=4.5e-06  Score=86.45  Aligned_cols=82  Identities=13%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.+++.|...+...++..|.+++++      +.....++..+.++|.++++.+.+++.+..||+..|.+.+
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~  169 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL  169 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence            3456677778888888777777778888775422      4667788888899999999999999988899999998876


Q ss_pred             HHHHHHHH
Q 010840          132 IAMGISNM  139 (499)
Q Consensus       132 ~~m~l~~i  139 (499)
                      +..++..+
T Consensus       170 ~~~~~~~~  177 (394)
T PRK11652        170 LLGAGVTF  177 (394)
T ss_pred             HHHHHHHH
Confidence            65554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.87  E-value=2.1e-06  Score=89.33  Aligned_cols=78  Identities=12%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA  131 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i~~  131 (499)
                      ..++++-.+.++|.|..-+...+.+.+.+++ +      |......+..+.++|..+++.+++++.++. +|+..|.+.+
T Consensus        98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~  170 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWA  170 (393)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3566778889999999889888888887752 1      467888888899999999999999987765 8988876544


Q ss_pred             HHHHHH
Q 010840          132 IAMGIS  137 (499)
Q Consensus       132 ~~m~l~  137 (499)
                      +..++.
T Consensus       171 ~~~~~~  176 (393)
T PRK09705        171 LPAVVA  176 (393)
T ss_pred             HHHHHH
Confidence            443333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.87  E-value=4.6e-07  Score=92.23  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~-~~~~~i~~~~g~~~~F~i~  130 (499)
                      .+.++++..+.+++.|...|...++..|.+++++      |...+.++..+.++|..+++ ++...+.+..+|+..|.+.
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  156 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP  156 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            4567778888999999999999999999987532      57788899999999999999 5777777788999999887


Q ss_pred             HHHHHHHHHHH
Q 010840          131 AIAMGISNMLF  141 (499)
Q Consensus       131 ~~~m~l~~i~f  141 (499)
                      ++..++..+..
T Consensus       157 ~~~~~~~~~~~  167 (379)
T TIGR00881       157 GIIAIIVSLIC  167 (379)
T ss_pred             HHHHHHHHHHH
Confidence            77665544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.86  E-value=5.8e-06  Score=87.76  Aligned_cols=302  Identities=12%  Similarity=0.043  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH--hhc---------
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QME---------  120 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i--~~~---------  120 (499)
                      ...+.+++.+.-++.....+...++++|..++++.+    ++.++.|+.+..|+|+++|+.++++.  .+.         
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            356677777788888988999999999999875422    35799999999999999999988875  111         


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCC
Q 010840          121 ----HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG  196 (499)
Q Consensus       121 ----~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~  196 (499)
                          .+++..|.+.++.++++.++-...-|.++..+++..+..               +         ++..  +   + 
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~---------~~~~--~---~-  239 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------E---------AAPP--S---K-  239 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------h---------cccc--c---c-
Confidence                167889999999888888766654443321111100000               0         0000  0   0 


Q ss_pred             CcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccc
Q 010840          197 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM  275 (499)
Q Consensus       197 ~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i  275 (499)
                           +. ..+.+   +.          -|+    .-.+--|.+.+++.+-.+.-+=|..+.+..|.++-+.- +-+.+-
T Consensus       240 -----~~-~~~~~---~~----------i~~----~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~  296 (477)
T TIGR01301       240 -----HG-EEAFF---GE----------LFG----AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ  296 (477)
T ss_pred             -----cc-hhhhH---HH----------HHH----HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc
Confidence                 00 00000   00          000    00011133444555555555555666666666654321 111000


Q ss_pred             c-Ceeec---CCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHhh---h
Q 010840          276 G-KLKLP---VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV-GIGLAVSILSVIWAGIFERYRR---N  347 (499)
Q Consensus       276 ~-g~~ip---~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri-~iG~~l~~l~~~~~a~~e~~r~---~  347 (499)
                      . .++--   ..+-...|.+...    ++..++.++.+|.       +..++. .++.++.++|++...++.....   .
T Consensus       297 ~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~  365 (477)
T TIGR01301       297 GAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY  365 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            0 00000   1122222333322    3333444444542       222334 6888888888888776643100   0


Q ss_pred             hhhhcCCcccccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840          348 YAISHGYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD--AMKSIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       348 ~~~~~g~~~~~~~~~~~~s-~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~--~mr~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                      ....++..      .++.. .++.+..+.+.|++-....-.=++.+.+..|+  +-.|.+||+..+...+...+.++...
T Consensus       366 ~~~~~~~~------~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g  439 (477)
T TIGR01301       366 YDGDGESL------PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG  439 (477)
T ss_pred             cccccccc------CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            00001111      11122 36667788999999999999999999999995  45699999999999999999887766


Q ss_pred             hhc
Q 010840          425 IIK  427 (499)
Q Consensus       425 ~v~  427 (499)
                      .+.
T Consensus       440 ~~~  442 (477)
T TIGR01301       440 PWD  442 (477)
T ss_pred             HHH
Confidence            644

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.85  E-value=6.9e-07  Score=95.45  Aligned_cols=78  Identities=17%  Similarity=0.296  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++..+.+++.|+..+...++..|.+++++      |...+.+++.+.++|..+++.+.+++.++.||++.|.+..
T Consensus       108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~  181 (496)
T PRK03893        108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI  181 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            4567777888999999999999999999987422      5778889999999999999999999988999999998754


Q ss_pred             HHHH
Q 010840          132 IAMG  135 (499)
Q Consensus       132 ~~m~  135 (499)
                      +..+
T Consensus       182 ~~~~  185 (496)
T PRK03893        182 LPII  185 (496)
T ss_pred             HHHH
Confidence            4333

>TIGR00889 2A0110 nucleoside transporter

Probab=98.84  E-value=5.2e-06  Score=87.17  Aligned_cols=136  Identities=14%  Similarity=0.154  Sum_probs=87.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840          320 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  399 (499)
Q Consensus       320 ~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~  399 (499)
                      ..+-+.++.++.++++........                  .. .+.+.++...++.++++.+..+....++.+..|++
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~~~------------------~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~  340 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYGDP------------------EY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH  340 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCc------------------ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            334466777777666655443210                  00 12333455678999999999999999999999999


Q ss_pred             hhHHHHhHHH-HHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          400 MKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       400 mr~~~~gl~~-l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                      .||.++|+.. ...++|..+|+.+...+.....    +++.+        +.+.-|...+++.++..++++++.|   ++
T Consensus       341 ~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----~~~~~--------~~~~~f~~~~~~~~i~~~l~~~~~~---~~  405 (418)
T TIGR00889       341 IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----AYGTF--------DWQTMWLFFAGYIAILAVLFMIFFK---YS  405 (418)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----cccCC--------chHHHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence            9999999996 5678888888888765442211    00000        1234566666776666666655554   33


Q ss_pred             cccccCCchhh
Q 010840          479 SEQKHGNDYEV  489 (499)
Q Consensus       479 ~~~~~~~~~~~  489 (499)
                      .++-++||+|+
T Consensus       406 ~~~~~~~~~~~  416 (418)
T TIGR00889       406 HNAIKVDDRDV  416 (418)
T ss_pred             ccCCCCccccc
Confidence            45556666664

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.84  E-value=2.7e-06  Score=87.94  Aligned_cols=82  Identities=15%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.++++-.+.+++.|...+...+...|.+++++      |.+.+..+..+.++|..+++.+++++.+..||++.|.+.+
T Consensus        91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            4567777888999888887877777777765422      4567888888999999999999999988899999999888


Q ss_pred             HHHHHHHH
Q 010840          132 IAMGISNM  139 (499)
Q Consensus       132 ~~m~l~~i  139 (499)
                      +..++..+
T Consensus       165 ~~~~~~~~  172 (382)
T PRK10091        165 VFNIAVLA  172 (382)
T ss_pred             HHHHHHHH
Confidence            76655544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.81  E-value=2.8e-07  Score=98.27  Aligned_cols=84  Identities=10%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010840           55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  134 (499)
Q Consensus        55 ~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m  134 (499)
                      ....+.+++++.+.......++..|+.+ ++++   ......++.|.+.++|.++|+.+++++.+.++|+..|.+.++..
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~  198 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL  198 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            3346788999999999999999999998 3322   24567789999999999999999999999899999999888877


Q ss_pred             HHHHHHHH
Q 010840          135 GISNMLFF  142 (499)
Q Consensus       135 ~l~~i~f~  142 (499)
                      ++..+..+
T Consensus       199 ll~~~~~~  206 (468)
T TIGR00788       199 LLQLFVSN  206 (468)
T ss_pred             HHHHHHHH
Confidence            77754433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.81  E-value=6.5e-06  Score=88.24  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS  125 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~~  125 (499)
                      ++.++-.+.++|.|+.-|+..+++.|.++++.      |.....+...+.++|..+|..+...+.        .++||++
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence            46777788999999999999999999987543      455677777788888888876654432        2689999


Q ss_pred             HHHHHHHH
Q 010840          126 AFGALAIA  133 (499)
Q Consensus       126 ~F~i~~~~  133 (499)
                      .|.+.++.
T Consensus       194 ~f~i~~~~  201 (490)
T PRK10642        194 PFFIALPL  201 (490)
T ss_pred             HHHHHHHH
Confidence            99886543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.81  E-value=1.8e-06  Score=88.98  Aligned_cols=81  Identities=14%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGA  129 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g--~~~~F~i  129 (499)
                      .+.++++..+.++|.|+..+...++..|.+++++      |.....++..+.++|..+++.+.+.+.+..+  |++.|.+
T Consensus       100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~  173 (405)
T TIGR00891       100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI  173 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence            3566778889999999999999999999987532      5788999999999999999999998877666  9999987


Q ss_pred             HHHHHHHHH
Q 010840          130 LAIAMGISN  138 (499)
Q Consensus       130 ~~~~m~l~~  138 (499)
                      .++..++.+
T Consensus       174 ~~~~~~~~~  182 (405)
T TIGR00891       174 SILPIIFAL  182 (405)
T ss_pred             HHHHHHHHH
Confidence            665544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.80  E-value=1.8e-06  Score=90.51  Aligned_cols=135  Identities=14%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840          285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  364 (499)
Q Consensus       285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~  364 (499)
                      +.+++.+..++..++..+    +.+|.       +..+.+.+|.++.+++++..++.                       
T Consensus       267 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~~~~~~~l~~~~~~l~~~~-----------------------  312 (420)
T PRK09528        267 LNSFQVFLEALIMFFAPF----IINRI-------GAKNALLLAGTIMAVRIIGSGFA-----------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHh-------CcchhhHHHHHHHHHHHHHHHhc-----------------------
Confidence            344444444455444443    34443       23334666777767666555432                       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhH-HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl-~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+...+....        +|   
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--------G~---  381 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--------GF---  381 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------Cc---
Confidence            2356777778889998888888888999999999999987655 55567778878777766543211        12   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                             ...|...+++.++..++.+..
T Consensus       382 -------~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        382 -------QGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHH
Confidence                   335666666666555544443

>PRK03699 putative transporter; Provisional

Probab=98.80  E-value=6e-06  Score=85.73  Aligned_cols=83  Identities=6%  Similarity=0.117  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-~~~g~~~~F~i~  130 (499)
                      .+.++++..+.+++.|...+...+.+.+.+++++      |.......+...++|+.+++.+.+++. +..||+..|.+.
T Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~  168 (394)
T PRK03699         95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI  168 (394)
T ss_pred             HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            4566777788899999888999999999886422      456667777888899999998888764 457999999887


Q ss_pred             HHHHHHHHHH
Q 010840          131 AIAMGISNML  140 (499)
Q Consensus       131 ~~~m~l~~i~  140 (499)
                      ++..++..+.
T Consensus       169 ~~~~~~~~~~  178 (394)
T PRK03699        169 GLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHH
Confidence            7766555443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.77  E-value=4e-06  Score=89.45  Aligned_cols=61  Identities=15%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .++++...++.++++....+...+++.+.+|       ++..|.+.|.+.+..-+|..+|+.+...+-
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788999999999999999999987       555777999999988888888877776654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.77  E-value=1.7e-06  Score=90.93  Aligned_cols=308  Identities=12%  Similarity=0.076  Sum_probs=177.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH----hhc---cch
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QME---HGW  123 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i----~~~---~g~  123 (499)
                      +...+++...+..++...+..+..+++.|..++.++     |.+...+...+.++|.++...+.+.+    ++.   .+|
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence            444557777778999999999999999999886542     46777787778888886555444433    322   168


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccc
Q 010840          124 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT  203 (499)
Q Consensus       124 ~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  203 (499)
                      .+.+.+.++..+++.++.....|. +.++++..                       .+                      
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~-----------------------~~----------------------  210 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ-----------------------EK----------------------  210 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeee-cccccccc-----------------------cc----------------------
Confidence            877777666666666555544333 00000000                       00                      


Q ss_pred             cccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecC
Q 010840          204 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV  282 (499)
Q Consensus       204 ~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~  282 (499)
                       +.++.+..                      .+.++-..+..+++...+.+....-..+....... .+..+    +. .
T Consensus       211 -~~~~~~~~----------------------~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~~-~  262 (428)
T PF13347_consen  211 -KISLRDSL----------------------RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----GL-I  262 (428)
T ss_pred             -ccccccch----------------------hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----hh-h
Confidence             00000000                      00111111222334444444444444444444443 23222    11 1


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840          283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  362 (499)
Q Consensus       283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~  362 (499)
                      +.+.....+..++..|+..+    +.+|.+       ..+-+..|.++.+++++...+...                   
T Consensus       263 ~~~~~~~~~~~~v~~~~~~~----l~~r~g-------k~~~~~~~~~~~~~~~~~~~~~~~-------------------  312 (428)
T PF13347_consen  263 SIFMLIFFVASIVGSPLWGR----LSKRFG-------KKKVYIIGLLLAALGFLLLFFLGP-------------------  312 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHcc-------ceeehhhhHHHHHHHHHHHHHHHh-------------------
Confidence            12233344445555555444    445532       233466788888888877766531                   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCC
Q 010840          363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK  435 (499)
Q Consensus       363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~  435 (499)
                        .+.++++...++.+++-....+...++..+..+       ++..|++.|++.+..-+|..+++.+...+-...+    
T Consensus       313 --~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G----  386 (428)
T PF13347_consen  313 --GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG----  386 (428)
T ss_pred             --hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC----
Confidence              347888889999999999988888888888777       4567999999999999999998888776543321    


Q ss_pred             CCCCcccc--cCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840          436 GQPNWLAQ--NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  477 (499)
Q Consensus       436 ~~~~w~~~--~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~  477 (499)
                          +-++  ..++..+...-.+.+.+.++..++-.++.++|+-
T Consensus       387 ----y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l  426 (428)
T PF13347_consen  387 ----YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL  426 (428)
T ss_pred             ----cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                1111  1222234445555556666656555667777763

>PRK09669 putative symporter YagG; Provisional

Probab=98.76  E-value=9.1e-06  Score=85.88  Aligned_cols=61  Identities=8%  Similarity=0.031  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .++++...++.++++....+...+++.+.++       ++..|...|++.+...+|..+|+.+...+-
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788999999999999999998886       456778889998888888877777776554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.70  E-value=5.3e-06  Score=88.65  Aligned_cols=81  Identities=16%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh---------ccch
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------EHGW  123 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~---------~~g~  123 (499)
                      ..++++-.+.++|.+..-+ ....+.+.++++.      |..+..+++...|+|+.+++.+.+.+..         ..||
T Consensus       125 ~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW  197 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW  197 (476)
T ss_pred             HHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence            3455555667777776533 4456777776422      5677888887788888888766655422         2589


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010840          124 GSAFGALAIAMGISNML  140 (499)
Q Consensus       124 ~~~F~i~~~~m~l~~i~  140 (499)
                      ++.|.+.++..++..+.
T Consensus       198 r~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        198 RIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999887766655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.70  E-value=1.4e-05  Score=84.25  Aligned_cols=82  Identities=13%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH-HhhccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~-i~~~~g~~~~F~i~  130 (499)
                      ...+++...+.+++.|..-+.....+.|.+++++      |..++.+++.+.++|+.+++.+.+. +.+..+|+..|.+.
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~  191 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP  191 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3456667778889999888888889999887543      5789999999999999998877665 54457999999987


Q ss_pred             HHHHHHHHH
Q 010840          131 AIAMGISNM  139 (499)
Q Consensus       131 ~~~m~l~~i  139 (499)
                      ++..++..+
T Consensus       192 ~~~~~i~~~  200 (438)
T TIGR00712       192 AICAIIVAL  200 (438)
T ss_pred             HHHHHHHHH
Confidence            777666544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.69  E-value=2.2e-05  Score=81.00  Aligned_cols=82  Identities=15%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +...+.++-.+.++|.|.. ++..+..++.++++      +|.+..+++..+.++|..+++.+++++.++.||+..|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            3456777778888888864 44445557777632      2688999999999999999999999999899999999885


Q ss_pred             HHHHHHHHH
Q 010840          131 AIAMGISNM  139 (499)
Q Consensus       131 ~~~m~l~~i  139 (499)
                      ++.-++..+
T Consensus       151 ~~l~~~~~~  159 (368)
T TIGR00903       151 AAVAAAGII  159 (368)
T ss_pred             HHHHHHHHH
Confidence            555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.64  E-value=2e-05  Score=83.87  Aligned_cols=81  Identities=19%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc---chHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAF  127 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~---g~~~~F  127 (499)
                      +.+.+++.-.+.++|.|..-|...+.+.|.+++++      |.....++-.+.++|..+++.+..++.+..   +|+..|
T Consensus       121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f  194 (467)
T PRK09556        121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF  194 (467)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence            45567777778899999888999999999998643      567888888999999999998887765543   588888


Q ss_pred             HHHHHHHHHH
Q 010840          128 GALAIAMGIS  137 (499)
Q Consensus       128 ~i~~~~m~l~  137 (499)
                      .+.++..++.
T Consensus       195 ~~~g~~~~~~  204 (467)
T PRK09556        195 IFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHH
Confidence            7766655443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.63  E-value=5.8e-05  Score=79.44  Aligned_cols=79  Identities=20%  Similarity=0.314  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccch
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW  123 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~  123 (499)
                      ...+.+.-.+.++|.|+.-|...++++|.+++++      |..+..+.+.+.+.|.++++.+...+.        +.+||
T Consensus       124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            3456677788999999999999999999987533      466788888999999998887765554        25899


Q ss_pred             HHHHHHHHHHHHH
Q 010840          124 GSAFGALAIAMGI  136 (499)
Q Consensus       124 ~~~F~i~~~~m~l  136 (499)
                      +..|.+.++..++
T Consensus       198 r~~F~i~~~~~ll  210 (432)
T PRK10406        198 RIPFALGAVLAVV  210 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999876664443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.62  E-value=4.7e-05  Score=81.86  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------  119 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~-----------  119 (499)
                      +...++++..+.++|.|+.-|....++.+.++.+.      |.+..++++.+.++|.++++.+..++..           
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  187 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD  187 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            35678889999999999999999999999998543      6788899999999999998877765421           


Q ss_pred             ------------ccchHHHHHHHHHHHHHHHH
Q 010840          120 ------------EHGWGSAFGALAIAMGISNM  139 (499)
Q Consensus       120 ------------~~g~~~~F~i~~~~m~l~~i  139 (499)
                                  +.+|++.|.+.++..++.++
T Consensus       188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                        24799999777665554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.62  E-value=5e-06  Score=88.12  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..++.++..+++..                          ....+.+.=.+-+++.|..-|++..+.+.-.+
T Consensus       105 v~~~~~~~sa~~t~l~P~aa~~--------------------------~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P  158 (466)
T KOG2532|consen  105 VFFISGLISALLTLLTPLAASI--------------------------GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAP  158 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------------------------cchhhHHHHHHhHHHHhHHHhhhhceeeeECC
Confidence            4566777777777777777651                          22355666788899999999999999988877


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF  141 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~~~~m~l~~i~f  141 (499)
                      .   +|   |..+....|-+..+|.+++.-++|++-+. .||...|.+.++.-++-.+++
T Consensus       159 ~---~E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w  212 (466)
T KOG2532|consen  159 P---NE---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILW  212 (466)
T ss_pred             H---HH---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence            4   33   68899999999999999999899999888 999999988666555444433

>TIGR00897 2A0118 polyol permease family

Probab=98.62  E-value=0.0001  Score=76.78  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA  129 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~i~~~~g~~~~F~i  129 (499)
                      ..+++...+.++|.+..-+...+...+.+++++      |.+...++..+.++|. .+++.+.+++.+..||...+..
T Consensus       106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            344555556677777766666777777766422      6788899999999996 6789988888888886544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.61  E-value=2e-05  Score=81.80  Aligned_cols=76  Identities=8%  Similarity=-0.145  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010840           55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  134 (499)
Q Consensus        55 ~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m  134 (499)
                      +.++..+.+++.+...|...++..|.-+    +    +...|.+.....|+|..+++.+++.+.+ .+|+..|.+.++..
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~  172 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR----N----SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA  172 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhh----h----cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence            3444556677777777877776654311    1    2346778888899999999999998864 69999998877766


Q ss_pred             HHHHH
Q 010840          135 GISNM  139 (499)
Q Consensus       135 ~l~~i  139 (499)
                      ++..+
T Consensus       173 ~~~~~  177 (396)
T TIGR00882       173 LILML  177 (396)
T ss_pred             HHHHH
Confidence            65544

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=4.9e-05  Score=80.89  Aligned_cols=86  Identities=9%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-------cch
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGW  123 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-------~g~  123 (499)
                      +...+++...+..++.-.+.-...++.++..+|  ++|   |.+..+|...+.++|.++++.+...+.+.       .||
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~  182 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGF  182 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence            344455555567788888888899999988776  433   57888999999999988876665433222       356


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010840          124 GSAFGALAIAMGISNMLF  141 (499)
Q Consensus       124 ~~~F~i~~~~m~l~~i~f  141 (499)
                      .....+.++..+++..+.
T Consensus       183 ~~~~~i~~ii~~i~~~i~  200 (460)
T PRK11462        183 QGGIAVLSVVAFMMLAFC  200 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666555555544444433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.58  E-value=6.2e-05  Score=77.35  Aligned_cols=87  Identities=14%  Similarity=0.282  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.+.++=.+.++..|.+-+-..+..+|..++++      |.++...-+.+..++..+|.=++.++.|..||+..|.+-
T Consensus       100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i  173 (394)
T COG2814         100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI  173 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence            45678888889999999999999999999998654      688999999999999999999999999999999999876


Q ss_pred             HHHHHHHHHHHHh
Q 010840          131 AIAMGISNMLFFI  143 (499)
Q Consensus       131 ~~~m~l~~i~f~~  143 (499)
                      ++.-+++++....
T Consensus       174 a~l~ll~~~~~~~  186 (394)
T COG2814         174 AVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655554443

>PRK09952 shikimate transporter; Provisional

Probab=98.58  E-value=7.9e-05  Score=78.68  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS  125 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~~  125 (499)
                      .+.+.-.+.++|.|+.-|...++..|.++++.      |....+....+.++|.+++..+..++.        +++||+.
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~  200 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI  200 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence            45566678999999999999999998887532      456667778888888888877666554        3579999


Q ss_pred             HHHHHHHHHH
Q 010840          126 AFGALAIAMG  135 (499)
Q Consensus       126 ~F~i~~~~m~  135 (499)
                      .|.+.++..+
T Consensus       201 ~f~~~~~~~l  210 (438)
T PRK09952        201 PFLFSIVLVL  210 (438)
T ss_pred             HHHHHHHHHH
Confidence            9988766543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.5e-07  Score=95.01  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHH
Q 010840           50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFG  128 (499)
Q Consensus        50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~  128 (499)
                      ...+.+.+.=.+.++|-+.+-|..+++++|.|+++.      |.+.|.||||++++|+.+|..+++++.+..+ |+++|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            355667777789999999999999999999998754      7999999999999999999999999988777 999999


Q ss_pred             HHHHHHHHHHHHH
Q 010840          129 ALAIAMGISNMLF  141 (499)
Q Consensus       129 i~~~~m~l~~i~f  141 (499)
                      ..++.+++..+..
T Consensus       193 ~~avl~vi~~~L~  205 (493)
T KOG1330|consen  193 GSAVLGVIVGLLV  205 (493)
T ss_pred             eehHHHHHHHHHH
Confidence            8887777665533

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.55  E-value=5.8e-05  Score=78.15  Aligned_cols=56  Identities=13%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          372 IQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       372 ~~~~l~~igE~~~~p~~~ef~~~~aP~-~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ...++.+++.-+..+.......+.+++ +.++..+++.....++|..+++.+...+.
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555666777777777777776 89999999988888899888888876654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.53  E-value=0.00021  Score=73.21  Aligned_cols=301  Identities=12%  Similarity=0.095  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840            4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE   83 (499)
Q Consensus         4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~   83 (499)
                      |+.|..+.+.|..+.......-...            ...-..+.........++..++++|.+.-..+..++.+|.-+|
T Consensus        53 I~~G~~~~~~g~~~ap~a~~~l~~~------------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e  120 (403)
T PF03209_consen   53 IWGGTLLQAGGLAIAPFALLLLAES------------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE  120 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccc------------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence            5677888888877776665421110            0000222334555666777788888888899999999999886


Q ss_pred             CChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH----HHHHHHHHHHHHHHHhccccccccCCCCChHH
Q 010840           84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF----GALAIAMGISNMLFFIGTPLYRHRLPGGSPLT  159 (499)
Q Consensus        84 ~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F----~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~  159 (499)
                      ++      |.+.-.+-|...=+|..++.++.+.+-+.++..-..    ..+.+.+.+.++..+--.++..+..+      
T Consensus       121 ~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~------  188 (403)
T PF03209_consen  121 ER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA------  188 (403)
T ss_pred             hh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc------
Confidence            44      577888888888899999998888776666543222    22333333333322211111110000      


Q ss_pred             HHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHH
Q 010840          160 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT  239 (499)
Q Consensus       160 ~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~  239 (499)
                                      .++                        .++..+.+.              |+... . -.+.++
T Consensus       189 ----------------~~~------------------------~~~~~f~~a--------------~~~~~-~-~~~a~~  212 (403)
T PF03209_consen  189 ----------------AAE------------------------RPRPPFREA--------------WRQVW-A-SPQARR  212 (403)
T ss_pred             ----------------CCC------------------------CCCccHHHH--------------HHHHH-h-CCChhH
Confidence                            000                        000011111              11000 0 012222


Q ss_pred             hhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC--eeecCCcccchhH---HHHHHHHHHHHHHHHHHhhhhcCC
Q 010840          240 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK--LKLPVTCMPVFPG---LSIFLILSLYYSTFVPLCRRITGH  314 (499)
Q Consensus       240 ~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g--~~ip~~~l~~~n~---i~iiil~pl~~~i~~p~~~r~~~~  314 (499)
                      ++..  +++...-|           ..|..-++ ..||  |++|+..-.-+|.   .-.++...+..++..|   |    
T Consensus       213 f~~f--l~l~t~a~-----------~~QD~iLE-Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~----  271 (403)
T PF03209_consen  213 FFVF--LFLGTLAF-----------FMQDVILE-PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---R----  271 (403)
T ss_pred             HHHH--HHHHHHHH-----------HhhHHHcC-CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C----
Confidence            2211  11111111           11211222 2333  5666653333343   3344444444443321   2    


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010840          315 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE  394 (499)
Q Consensus       315 ~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~  394 (499)
                         ..+.+--.+|....++++....+...                  .  -+.+-+.+..+++|+|--+..++.+...-+
T Consensus       272 ---~~~~~~a~~G~~~~~~~f~lii~a~~------------------~--~~~~~~~~~~~l~G~g~G~f~vgals~mM~  328 (403)
T PF03209_consen  272 ---LGKKRTAALGCLLGALAFALIILAGP------------------L--GSPWLFRPGVFLLGLGNGLFTVGALSLMMD  328 (403)
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHHHh------------------c--ccchHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence               22333344677777777665444321                  0  235667788999999999999999999999


Q ss_pred             hcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840          395 EAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  428 (499)
Q Consensus       395 ~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~  428 (499)
                      .++++..|+.+|+|...++++..++.++.+...+
T Consensus       329 lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  329 LTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887777777766544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00896 CynX cyanate transporter

Probab=98.53  E-value=4.5e-05  Score=77.79  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGAL  130 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~--g~~~~F~i~  130 (499)
                      +.++++..+.++|.|...+...+...|.+++ +      |.+..+++..+.++|..+++.+.+++.+..  +|+..|.+.
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            4566777788888888888888877776642 1      467889999999999999999988887654  388888766


Q ss_pred             HHHHHHH
Q 010840          131 AIAMGIS  137 (499)
Q Consensus       131 ~~~m~l~  137 (499)
                      ++..++.
T Consensus       161 ~~~~~~~  167 (355)
T TIGR00896       161 ALPALLA  167 (355)
T ss_pred             HHHHHHH
Confidence            6544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.52  E-value=6.4e-05  Score=79.19  Aligned_cols=73  Identities=19%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH--------hhccchHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS  125 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i--------~~~~g~~~  125 (499)
                      .+.++-.+.++|.|+.-|+..++..|.+++++      |.....++....++|..+++.+++.+        .++.||++
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            45667778899999999999999999997543      56777888777888877777766655        24689999


Q ss_pred             HHHHHHH
Q 010840          126 AFGALAI  132 (499)
Q Consensus       126 ~F~i~~~  132 (499)
                      .|.+..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.51  E-value=9e-05  Score=77.59  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh------ccchHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGS  125 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~------~~g~~~  125 (499)
                      ...++++-.+.++|.|+.-|....+..+.++++   +   |.....++..+.++|..+++.+++++.+      ..||++
T Consensus        96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~  169 (412)
T TIGR02332        96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAY---F---RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW  169 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhH
Confidence            346677778899999999888888888888732   1   5678889999999999999999988753      369999


Q ss_pred             HHHHHHHHHHHHHH
Q 010840          126 AFGALAIAMGISNM  139 (499)
Q Consensus       126 ~F~i~~~~m~l~~i  139 (499)
                      .|.+.++..++..+
T Consensus       170 ~f~~~~~~~l~~~~  183 (412)
T TIGR02332       170 LFLLEGFPSVILGV  183 (412)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99987666554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.49  E-value=5.9e-05  Score=79.04  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..+|.++...++.                         ..+.+.+.++..+.++|.|...+..++++.+..+
T Consensus        70 ~~~~g~~l~~~g~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~  124 (410)
T TIGR00885        70 GILLGLFLYALGAFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGP  124 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence            566777777777766544322                         1245678888999999999999999999888765


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGI  136 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~--------------------------~~g~~~~F~i~~~~m~l  136 (499)
                      +++      +.+..++.....++|+.+++.+.+.+..                          ..+|+..|.+.++..++
T Consensus       125 ~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~  198 (410)
T TIGR00885       125 EST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA  198 (410)
T ss_pred             HhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432      3456788888899999999999887632                          24699999876665554


Q ss_pred             HHHH
Q 010840          137 SNML  140 (499)
Q Consensus       137 ~~i~  140 (499)
                      ..+.
T Consensus       199 ~~~~  202 (410)
T TIGR00885       199 VALL  202 (410)
T ss_pred             HHHH
Confidence            4333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2.1e-05  Score=80.34  Aligned_cols=90  Identities=14%  Similarity=0.278  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH--HHHhhccchHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFG  128 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~--~~i~~~~g~~~~F~  128 (499)
                      +.+++.+-+.+-+.-+|.=-|...-.++.-|..++      |.+..+.+-.+-|+|+.+.+.++  +++..+++|+.+|.
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            45666667777888888878888888988887543      67889999999999999999998  99988899999999


Q ss_pred             HHHHH-HHHHHHHHHhccc
Q 010840          129 ALAIA-MGISNMLFFIGTP  146 (499)
Q Consensus       129 i~~~~-m~l~~i~f~~g~~  146 (499)
                      +|++. ++++++.+..+|.
T Consensus       190 ~pgiiaiival~~~~~~rd  208 (448)
T COG2271         190 FPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            98876 4566666665544

>TIGR01272 gluP glucose/galactose transporter

Probab=98.39  E-value=0.00017  Score=72.59  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc--------
Q 010840           49 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------  120 (499)
Q Consensus        49 ~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~--------  120 (499)
                      ..+.+.+.+++.+++.|.+...+..++++++.-++++      +.+..|+--.+..+|++++|++.+.+-.+        
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            3578899999999999999999999999999987543      45678888888899999999999876521        


Q ss_pred             --------cchHHHHHHHHHHHHHHHHHH
Q 010840          121 --------HGWGSAFGALAIAMGISNMLF  141 (499)
Q Consensus       121 --------~g~~~~F~i~~~~m~l~~i~f  141 (499)
                              ..|++.|++.++..++..+++
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    468889885555444444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10133 L-fucose transporter; Provisional

Probab=98.28  E-value=0.00055  Score=72.35  Aligned_cols=85  Identities=15%  Similarity=0.063  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++..++.+|.++...++..                         .+...+.++..+.++|.|...+..++++.|..+
T Consensus        93 ~l~~g~~~~~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~  147 (438)
T PRK10133         93 GIITGLFLYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP  147 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC
Confidence            5667778888888765433321                         134678889999999999999999999987543


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  118 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~  118 (499)
                      + +  +   +....+.+.....+|..+|+.+++.+.
T Consensus       148 ~-~--~---~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        148 E-S--S---GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             h-h--h---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2  1   233466777777899999988876543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.27  E-value=0.00038  Score=73.14  Aligned_cols=63  Identities=10%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 010840           50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  117 (499)
Q Consensus        50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i  117 (499)
                      .+....++-..+..++.-.+.-.-.++.+...++  ++|   |.+..+|..++.|+|.++...+.+.+
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666778888888888889999988775  554   68899999999999988776666544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.21  E-value=3.3e-05  Score=81.56  Aligned_cols=85  Identities=14%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  133 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~  133 (499)
                      ...+.+.+..+|.....-..-++..+.-++++..    +.+.-++.|.+.++|++++..+.|++.++.+++..|.++++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~  163 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL  163 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence            4455677889999998888888888877554422    456678889999999999999999999999999999888776


Q ss_pred             HHHHHHHHH
Q 010840          134 MGISNMLFF  142 (499)
Q Consensus       134 m~l~~i~f~  142 (499)
                      ..+.++..+
T Consensus       164 ~~l~~~~~~  172 (433)
T PF03092_consen  164 PLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHH
Confidence            666655333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.0031  Score=67.86  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  446 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln  446 (499)
                      .+-++..-++.|+..-...........+..+...=+-..|+..+..+++..+|+.+...+...++               
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------  452 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------  452 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------
Confidence            44556667888888888888888888889998888899999999999999999999876553331               


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          447 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       447 ~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                        .++..|...+...+++.+++++....++++
T Consensus       453 --~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~  482 (509)
T KOG2504|consen  453 --NYDHAFYFCGLCFLLSAVLLLILRECLKRR  482 (509)
T ss_pred             --CeeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence              123455556666666666665555344443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.05  E-value=0.0003  Score=71.61  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh----------cc
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EH  121 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~----------~~  121 (499)
                      .+.++++-.+.+++.+.+ +...++++|.+++++      |....+++..+.|+|..+++.+.+.+.+          +.
T Consensus        91 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        91 YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            345666777788886665 446778888886432      5678888888888998888877766543          24


Q ss_pred             chHHHH-HHHHHHHH
Q 010840          122 GWGSAF-GALAIAMG  135 (499)
Q Consensus       122 g~~~~F-~i~~~~m~  135 (499)
                      +|++.| .+.++..+
T Consensus       164 ~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       164 AWGWAFVIVPAGILL  178 (366)
T ss_pred             cccchhHHHHHHHHH
Confidence            899988 44344333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.96  E-value=0.034  Score=59.47  Aligned_cols=57  Identities=16%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcccc
Q 010840          374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  430 (499)
Q Consensus       374 ~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t  430 (499)
                      -++.|+.---..+..=+++.++.|++..+.+.|+|.++.-.++.+|+++.+++...+
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356777777778888999999999999999999999999999999999999887655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.0061  Score=65.18  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh------hccchH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------MEHGWG  124 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~------~~~g~~  124 (499)
                      +.+.+.+--.+.++-.+..-|+....++.-|++++      +..-+.+||-+.++|..+|.++...+.      ...||+
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~  206 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR  206 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence            44556666678999999999999999999998643      567789999999999999999988863      357999


Q ss_pred             HHHHHHHHHHHHHHH
Q 010840          125 SAFGALAIAMGISNM  139 (499)
Q Consensus       125 ~~F~i~~~~m~l~~i  139 (499)
                      +.|+|.++.+++..+
T Consensus       207 ~~FiI~G~i~~~~gi  221 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGI  221 (495)
T ss_pred             eehhHHHHHHHHHHh
Confidence            999999887776554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.92  E-value=0.014  Score=61.02  Aligned_cols=92  Identities=14%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHH-HhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccch
Q 010840          371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR  449 (499)
Q Consensus       371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l-~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~  449 (499)
                      +...+++|+.-.+..+++..++.+.+|++.|+.+||++.. ..|+|..+|+.+.+.+.+.-+      .+..      -.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g------~~~~------~~  372 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG------ARGM------FD  372 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc------chhh------hh
Confidence            3334689999999999999999999999999999999876 457888887777665442110      0000      01


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840          450 FDYLYWLLAVLSVINFCAFLYSAYR  474 (499)
Q Consensus       450 l~~~f~~la~l~~~~~~~~~~~~~~  474 (499)
                      ...+|.+.+++.++..+++++..|+
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC
Confidence            1235666777777777777776543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.89  E-value=0.00088  Score=74.16  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---------  121 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~---------  121 (499)
                      ....++++-.+.++|.|..-+...+++.|.+++++      +..++.+++.+.++|..+|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            35567789999999999999999999999887543      578899999999999999999999886543         


Q ss_pred             -------------chHHHHHHHHHHHHHHHHHHH
Q 010840          122 -------------GWGSAFGALAIAMGISNMLFF  142 (499)
Q Consensus       122 -------------g~~~~F~i~~~~m~l~~i~f~  142 (499)
                                   +|+.+|.+.++..++..+.++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         389999888877666555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.0015  Score=66.58  Aligned_cols=87  Identities=18%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      ..+.++++=.+=++|.+....+-.++++|.|+++.+     |.+...+---.+.+|.++||-.+|.+.|..|+..-|+++
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL  232 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL  232 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence            456889999999999999999999999999998653     578888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010840          131 AIAMGISNMLFF  142 (499)
Q Consensus       131 ~~~m~l~~i~f~  142 (499)
                      ++++++..+.-+
T Consensus       233 ~~v~Lld~~L~l  244 (464)
T KOG3764|consen  233 AIVLLLDGALQL  244 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            998887776443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.89  E-value=0.00042  Score=71.34  Aligned_cols=110  Identities=12%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.++..+...+..|+...+    .+|.       ...+-+.++.++.+++.+..++.                      
T Consensus        51 ~~~~~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~----------------------   97 (405)
T TIGR00891        51 SLISAALISRWFGALMFGLW----GDRY-------GRRLPMVTSIVLFSAGTLACGFA----------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            44555555666666665554    3443       22233556666666665554432                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus        98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             335666778899999999999999999999999999999999999999999999998876644

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.88  E-value=0.0035  Score=65.16  Aligned_cols=89  Identities=10%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHH-HHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~-~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                      .+++|+++.-.++++---+.-....-++.+..|+++.++...+. .++.++|..+-+.+.+..++               
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---------------  374 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---------------  374 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---------------
Confidence            45788888889999998899999999999999999998888775 57778888876666655432               


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                      ++   .....|++++.+.++..++=.+.
T Consensus       375 ~~---G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  375 RI---GFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hc---CcHHHHHHHHHHHHHHHHHheee
Confidence            11   11236777777766555544333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.87  E-value=0.0004  Score=69.87  Aligned_cols=132  Identities=18%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..++    .+|       .++.+-+.+|.++.+++.+...+.                      
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~----------------------   82 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYL----SDR-------FGRRRVLIIGLLLFALGSLLLAFA----------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHH-------S-HHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHH-------cCCeeeEeehhhhhhhHHHHhhhh----------------------
Confidence            34444555555666665544    344       233345777888888774444432                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|+.....++|..+++.+...+...        .+|   
T Consensus        83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------~~~---  150 (352)
T PF07690_consen   83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY--------FGW---  150 (352)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------CHH---
T ss_pred             -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc--------ccc---
Confidence             12447788899999999999999999999999999999999999999999999999998765411        112   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHH
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCA  467 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~  467 (499)
                             ...|++.++++++..++
T Consensus       151 -------~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 -------RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             -------CCHHHHHHHHHHHHHHH
T ss_pred             -------ccccccccchhhhhhhh
Confidence                   22566677777766664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.83  E-value=1.4e-05  Score=82.36  Aligned_cols=141  Identities=17%  Similarity=0.193  Sum_probs=104.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      .+|..-.+.-+++.|++..+    ..|       .+..+-|++|.++-+++++..++.                      
T Consensus        72 ll~~vf~v~~~i~sPl~gyL----adr-------yNR~~v~~vG~~iW~~Av~~~~fs----------------------  118 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYL----ADR-------YNRKRVIAVGIFIWTLAVFASGFS----------------------  118 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHH----Hhh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence            44544455555677777664    233       345566899999988887776654                      


Q ss_pred             cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccc
Q 010840          364 DLSAYWLL-IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  442 (499)
Q Consensus       364 ~~s~~wli-~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~  442 (499)
                        +-+||+ ..=.+.|+||..++|....++.+..|+..||.++|++++..-+|+.+|.+..+.+...+.       .|  
T Consensus       119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W--  187 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW--  187 (493)
T ss_pred             --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce--
Confidence              245654 567899999999999999999999999999999999999999999999988877664431       25  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          443 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       443 ~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                              -+=|++-++++++.+++..++.+-=+
T Consensus       188 --------r~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  188 --------RWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             --------EEEEEeehHHHHHHHHHHHhhccCcc
Confidence                    22466778888887776666654433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.83  E-value=0.00083  Score=70.31  Aligned_cols=82  Identities=18%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  402 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~  402 (499)
                      -+.+++++.+++.+..++.                       .+.++++...++.|++|....|.....+.+..|++.|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg  131 (412)
T TIGR02332        75 WIAGIMVLWGIASTATMFA-----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA  131 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence            3667777777777666543                       34677788899999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          403 IGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ..+|++....++|..+++.+...+.
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332       132 RANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988876543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.80  E-value=0.0007  Score=69.29  Aligned_cols=110  Identities=15%  Similarity=-0.018  Sum_probs=79.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..+    +.+|.       +..+-+.+|.++.+++.+..+..                      
T Consensus        44 ~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~----------------------   90 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGP----LSDRY-------GRRPVLLLGLFIFALSSLGLALS----------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            3444444445555555443    34442       23334667777777776665443                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             235667778899999999999999999999999999999999999999999988888876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03545 putative arabinose transporter; Provisional

Probab=97.80  E-value=0.00083  Score=69.50  Aligned_cols=87  Identities=16%  Similarity=0.044  Sum_probs=70.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      .+..+-+.++.++.+++.+..+..                       .+.++++...++.|+++....|.....+.+..|
T Consensus        71 ~g~r~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~  127 (390)
T PRK03545         71 VERRKLLIGLFVLFIASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAP  127 (390)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344455777888877777666543                       346677777889999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ++.|+..+|++....++|..+++.+...+.
T Consensus       128 ~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        128 AGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999988876643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.80  E-value=0.0087  Score=65.17  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +...+..|..+.++|.|... .....++|..+.+.      |...+.+..+..=+...+++.++..+..+.+|+|.|.+.
T Consensus       130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~  202 (599)
T PF06609_consen  130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF  202 (599)
T ss_pred             cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence            34568889999999988765 44556788876422      222222222222222233455555555567999999999


Q ss_pred             HHHHHHHHHHH
Q 010840          131 AIAMGISNMLF  141 (499)
Q Consensus       131 ~~~m~l~~i~f  141 (499)
                      ++...++++..
T Consensus       203 ~i~~~i~~vl~  213 (599)
T PF06609_consen  203 IIWSGIALVLI  213 (599)
T ss_pred             HHHHHHHHHHH
Confidence            88877777643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.026  Score=57.91  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      .|++|..+|++|..+..=.+.                         ......|..+|.+++.|.|..+...++++++.-+
T Consensus        80 gi~lgL~l~avg~~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~  134 (422)
T COG0738          80 GIVLGLLLYAVGAALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGK  134 (422)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence            477888889988888764433                         2356688999999999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  119 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~  119 (499)
                      ++...+   |   .|.-=-..-+|++++|.+++++-.
T Consensus       135 ~~~a~~---r---lnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         135 PESAAF---R---LNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             chhHHH---H---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            754322   2   223233346999999999988754

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.78  E-value=0.00047  Score=70.13  Aligned_cols=136  Identities=15%  Similarity=0.053  Sum_probs=93.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|.+++       +-+.+|.++.+++.+..+..                      
T Consensus        33 ~~~~~~~~~~~~~~~~~g~l----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   79 (399)
T TIGR00893        33 YVFSAFSWGYVVGQFPGGWL----LDRFGAR-------KTLAVFIVIWGVFTGLQAFA----------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHhcCcc-------eeeHHHHHHHHHHHHHHHHH----------------------
Confidence            45555666666666665554    3443211       22456666666666555443                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                       .+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+...        .+|   
T Consensus        80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~---  147 (399)
T TIGR00893        80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH--------FSW---  147 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh--------CCc---
Confidence             34667777889999999999999999999999999999999999999999999998887754321        123   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                             .+.|+..++++++..++....
T Consensus       148 -------~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       148 -------QWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             -------hHHHHHHHHHHHHHHHHhhhe
Confidence                   345666666666555544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.75  E-value=0.0017  Score=67.38  Aligned_cols=109  Identities=14%  Similarity=0.009  Sum_probs=77.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..++..++    .+|.+       ..+-+.+|.++.+++.+..+..                      
T Consensus        54 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------  100 (406)
T PRK11551         54 WAFSAGILGLLPGALLGGRL----ADRIG-------RKRILIVSVALFGLFSLATAQA----------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhC-------CchhHHHHHHHHHHHHHHHHHh----------------------
Confidence            34445555555555554443    44432       2233666666666655444332                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus       101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34667777889999999999999999999999999999999999999999999988776543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.73  E-value=0.0014  Score=66.25  Aligned_cols=115  Identities=9%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|.       +..+-+.++.++.+++.+..+.....                 ..
T Consensus        38 ~~~~~~~~~~~i~~~~~G~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~~   89 (365)
T TIGR00900        38 LAALAGMLPYVVLSPIAGAL----ADRY-------DRKKVMIGADLIRAVLVAVLPFVALL-----------------GG   89 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhHH----HHhh-------chhHHHHHHHHHHHHHHHHHHHHHHc-----------------CC
Confidence            34555555566666665443    3442       22233556666666665555544320                 00


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.+++..+..|....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        90 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        90 -LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             356777788899999999999999999999999999999999999999999999988876653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.0015  Score=67.20  Aligned_cols=138  Identities=16%  Similarity=0.067  Sum_probs=108.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++-+.-.+.+.+..|++..+..++           +..+-+-..+++.++|-+..++.                      
T Consensus        52 ~lis~yAl~~ai~ap~l~~lt~r~-----------~Rr~lLl~~l~lFi~~n~l~alA----------------------   98 (394)
T COG2814          52 QLITAYALGVALGAPLLALLTGRL-----------ERRRLLLGLLALFIVSNLLSALA----------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc-----------chHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            677888889999999877653332           22233445566777777777665                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                       -|.+.++..=++.+++--...+.....+.+.+|++.|+..+|+-+....++..+|..+.+++...-        +|   
T Consensus        99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~--------GW---  166 (394)
T COG2814          99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--------GW---  166 (394)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh--------hH---
Confidence             457788889999999999999999999999999999999999999999999999999888766432        36   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCAFLYSAY  473 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~~~  473 (499)
                             -.-|+.++.++++.++..+...+
T Consensus       167 -------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 -------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                   23678888888888877776666

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.68  E-value=0.0014  Score=67.70  Aligned_cols=61  Identities=18%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +.++++...++.+++..+..+.....+.+..|++.|+..+|++.....+|..+++.+...+
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677788999999999999999999999999999999999988888888888776654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.62  E-value=0.0037  Score=64.96  Aligned_cols=108  Identities=13%  Similarity=-0.018  Sum_probs=81.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840          286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  365 (499)
Q Consensus       286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~  365 (499)
                      .+...+...+..|+..+    +.+|       ....+-+.++.++.+++.+..+..                       .
T Consensus        61 ~~~~~~~~~~~~~~~g~----l~Dr-------~grr~~~~~~~~~~~~~~~~~~~~-----------------------~  106 (394)
T PRK10213         61 VTVTAFVAMFASLFITQ----TIQA-------TDRRYVVILFAVLLTLSCLLVSFA-----------------------N  106 (394)
T ss_pred             HHHHHHHHHHHHHHHHH----Hhcc-------cCcHHHHHHHHHHHHHHHHHHHHH-----------------------C
Confidence            34455555556565543    3444       233455678888877776665442                       3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +.++++..-++.|++.....|.....+.+..|++.|+..+|+.....++|..+++.+...+.
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777778899999999999999999999999999999999999999999999998887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.61  E-value=0.0019  Score=68.54  Aligned_cols=110  Identities=14%  Similarity=-0.011  Sum_probs=81.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+..++..|+..++    .+|.       +..+-+.+|.++.+++.+..+..                      
T Consensus        41 ~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~----------------------   87 (485)
T TIGR00711        41 WVITSYMLANAISIPLTGWL----AKRF-------GTRRLFLISTFAFTLGSLLCGVA----------------------   87 (485)
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHhCc----------------------
Confidence            55556666666666766554    3332       22233566777666666554432                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence             346667778899999999999999999999999999999999999999999999988876643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.60  E-value=0.0023  Score=67.35  Aligned_cols=109  Identities=13%  Similarity=-0.004  Sum_probs=77.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840          285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  364 (499)
Q Consensus       285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~  364 (499)
                      +.+...+...+..|+..+    +.+|.       ++.+-+.+|+++.+++.+..+..                       
T Consensus        63 ~~~~~~~~~~~~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~-----------------------  108 (434)
T PRK11663         63 LATLFYITYGVSKFVSGI----VSDRS-------NARYFMGIGLIATGIINILFGFS-----------------------  108 (434)
T ss_pred             HHHHHHHHHHHHHhhhhH----HHhhc-------CCchhHHHHHHHHHHHHHHHHHH-----------------------
Confidence            334444444555555444    34443       22233677777777776655443                       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .+.+.++...++.++++.+..+.....+.+..|++.||..+|++....++|..+++.+...+.
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234555556778899999889999999999999999999999999999999999988776654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.59  E-value=0.0047  Score=63.90  Aligned_cols=108  Identities=10%  Similarity=0.093  Sum_probs=72.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840          285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  364 (499)
Q Consensus       285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~  364 (499)
                      +.++..+...+..|+..++    .+|..       ..+-+.+|.++.+++.+..+..                       
T Consensus        59 ~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~-----------------------  104 (408)
T PRK09874         59 VFSITFLFSAIASPFWGGL----ADRKG-------RKIMLLRSALGMGIVMVLMGLA-----------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hhhhC-------cHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            3444455555666665444    34421       2223556666666665554432                       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466677778888888765 4677788889999999999999999988889888888876543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.59  E-value=0.0038  Score=67.00  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=82.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      |..+...+...+..|+..++    .+|+       ...+-+.+|.++.+++.+..+..                      
T Consensus        45 ~~~~~~~l~~~~~~~~~G~l----~D~~-------Grk~~l~~~~~~~~~~~~~~~~a----------------------   91 (495)
T PRK14995         45 WIIDIYSLVMAGMVLPMGAL----GDRI-------GFKRLLMLGGTLFGLASLAAAFS----------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence            55555566666666666554    3442       23344677888777777766543                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-APDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~-aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+...+.
T Consensus        92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             3467777788999999999999888877666 57899999999999999999999999987754

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.56  E-value=0.00045  Score=71.52  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      ..++++..+.++|.+..-|.......|.++++      ++.+.+.+++...++|..+++.+.+++.+..||+..|.+.++
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  376 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAAL  376 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            34556677888888887787777777655432      267899999999999999999999999888999999998888


Q ss_pred             HHHHHHHHHHhccccccccCC
Q 010840          133 AMGISNMLFFIGTPLYRHRLP  153 (499)
Q Consensus       133 ~m~l~~i~f~~g~~~~~~~~p  153 (499)
                      ..+++++.....+++.+++.|
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        377 AALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHhcccccccCC
Confidence            888877766555555444433

>TIGR00895 2A0115 benzoate transport

Probab=97.54  E-value=0.00071  Score=69.25  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++.+..+..                       .+.++++...++.+++.....+.....+.+..|++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r  139 (398)
T TIGR00895        83 RVLLWSILLFSVFTLLCALA-----------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR  139 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhh
Confidence            33556666666666554432                       2356667778999999999999999999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          402 SIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +..+|++.....+|..+++.+...+.
T Consensus       140 ~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       140 GTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             chhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988876543

>PRK10054 putative transporter; Provisional

Probab=97.53  E-value=0.0039  Score=64.84  Aligned_cols=110  Identities=7%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.++..+..++..|+..++    .+|.       ...+-+.+|.++.+++++..++.+                     
T Consensus        47 ~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~k~~~~~~~~~~~~~~~~~~~~~---------------------   94 (395)
T PRK10054         47 YAMTIALTIGVVFSLGFGIL----ADKF-------DKKRYMLLAITAFASGFIAIPLVN---------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----Hhhc-------CcchhHHHHHHHHHHHHHHHHHHh---------------------
Confidence            33444445555566665554    3332       222346677777777776655442                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                        +.+..+..+.+.+.+.....+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus        95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23334445667777877788888999999999999999999999999999999988887654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.51  E-value=0.0067  Score=51.72  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .++.....++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            5556667889999999999999999999999999999999999999999999988876643

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.51  E-value=0.0048  Score=63.72  Aligned_cols=110  Identities=11%  Similarity=-0.050  Sum_probs=82.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+.+.+..++..|+..++    .+|.       +..+-+.+|.++.+++.+..+..                      
T Consensus        42 ~~~s~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~l~~~~----------------------   88 (382)
T PRK10091         42 HMISYYALGVVVGAPIIALF----SSRY-------SLKHILLFLVALCVIGNAMFTLS----------------------   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HccC-------ccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            45556666666676665543    4442       33344677777777777665543                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence             346777778899999999999999999999999999999999999888899988887766543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.51  E-value=0.18  Score=53.51  Aligned_cols=59  Identities=8%  Similarity=-0.046  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  116 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~  116 (499)
                      +.+.+++.-.+.++| |..-+.....+.+.|++++      |..+..++-...|+|..++..+.+.
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            355677777778887 5566778888888887432      5677888877778888766655544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.47  E-value=0.00069  Score=68.74  Aligned_cols=107  Identities=10%  Similarity=-0.029  Sum_probs=76.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..++..++    .+|.+       ..+-+.+|.++.+++.+..+..                      
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------   80 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSV----SDRSN-------PRVFLPIGLILCAIVNLFFGFS----------------------   80 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHH----HHhhC-------CeehhHHHHHHHHHHHHHHHHh----------------------
Confidence            34444455555555554443    44432       2234667777777777666544                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhh-hhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI-LNS  424 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~-l~~  424 (499)
                       .+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++. +..
T Consensus        81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence             235666777889999999999999999999999999999999999999999999883 443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.47  E-value=0.0033  Score=65.80  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|+++.+++.+..+..                       .+.++++..-++.|+++.+..+.......+.-|++.+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~a-----------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         82 PVLITGALIFTLACAATLFT-----------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34666777766666554432                       3467777788999999988777777778888899999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHH
Q 010840          402 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF  468 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~  468 (499)
                      +..+|++.....+|..+|+.+...+...        .+|          ...|+..++++++..+..
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~--------~gw----------~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGAALMHF--------VHW----------KVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCH----------HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888887654321        134          235666666666555443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.46  E-value=0.0011  Score=56.83  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  131 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~  131 (499)
                      .+.+.+...+.+++.+...+...+...|.+++++      |.+...+++...++|..+++.+.+++.+..+|+..|.+.+
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  124 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA  124 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence            3456667788889999888999999999887543      5788999999999999999999999988889999998877


Q ss_pred             HHHHHHHHHHH
Q 010840          132 IAMGISNMLFF  142 (499)
Q Consensus       132 ~~m~l~~i~f~  142 (499)
                      +..+++.+...
T Consensus       125 ~~~~~~~~~~~  135 (141)
T TIGR00880       125 ILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHh
Confidence            77666655443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.12  Score=52.55  Aligned_cols=85  Identities=22%  Similarity=0.366  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA  129 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i  129 (499)
                      +...++.|-.+++.|.+....-+.+++-+-|+++       ....-..|-.+.++|+.+++.+++.+.++. ||+.+.+.
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            4678999999999999998888888887777643       356788899999999999999999988777 79998877


Q ss_pred             HHHHHHHHHHHHH
Q 010840          130 LAIAMGISNMLFF  142 (499)
Q Consensus       130 ~~~~m~l~~i~f~  142 (499)
                      =+..-++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.40  E-value=0.0063  Score=68.33  Aligned_cols=109  Identities=13%  Similarity=0.090  Sum_probs=77.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..++..+    +..|.+       ..+-+.+++++.+++.++.++.                      
T Consensus       206 ~l~s~~~lG~iiG~li~G~----LsDR~G-------RR~~lii~lil~~i~~ll~afa----------------------  252 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGG----LADKLG-------RKQCLLICLSVNGFFAFFSSFV----------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            3444445555555555444    345432       2233556666666655554433                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|++.....|....++.+..|++.||..++++....++|..+++.+...+
T Consensus       253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23566777889999999999999999999999999999999999999999998888766443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.39  E-value=0.013  Score=59.50  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      +.....+.++.-....+.....+.+..|.+.||..+|+.....+++..+|+++.+.
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            44456788999999999999999999999999999999999999999999999854

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.38  E-value=0.007  Score=63.07  Aligned_cols=83  Identities=10%  Similarity=0.077  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++++..+..                       .+.|+++...++.++++.+..|.....+.+.+|++.|
T Consensus        77 ~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  133 (400)
T PRK11646         77 PMIVTGMLMRAAGFATMAIA-----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQR  133 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33667778777777665433                       3367777888999999999999999999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          402 SIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +..+|+......+|..+|+.+...+.
T Consensus       134 ~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        134 GRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988877654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.36  E-value=0.011  Score=61.87  Aligned_cols=113  Identities=9%  Similarity=0.029  Sum_probs=84.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|.       ...+-+.+|+++.+++.+.......                   .
T Consensus        42 ~l~s~~~~g~~i~~~~~g~l----~~r~-------G~r~~~~~g~~l~~~g~~l~~~~~~-------------------~   91 (410)
T TIGR00885        42 LVQSAFYGGYFIMAIPAAIF----MKKL-------SYKAGILLGLFLYALGAFLFWPAAE-------------------I   91 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHHHh-------------------h
Confidence            45566666667777765554    4442       3334577888888888766433211                   0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.|+|--+..+....++.+.+|++.++..+++.....++|..+|+.+...+.
T Consensus        92 -~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        92 -MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             -ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             346666777899999999999999999999999999999999999999999999988877653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03699 putative transporter; Provisional

Probab=97.36  E-value=0.011  Score=61.36  Aligned_cols=107  Identities=12%  Similarity=0.052  Sum_probs=74.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840          286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  365 (499)
Q Consensus       286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~  365 (499)
                      .+...+...+..++..++.    +|.       +..+-+.++.++.+++.+..++.                       .
T Consensus        48 ~s~~~~~~~i~~~~~g~l~----dr~-------g~r~~~~~~~~~~~i~~~l~~~~-----------------------~   93 (394)
T PRK03699         48 FTFLNAGILISIFLNAWLM----EII-------PLKRQLIFGFALMILAVAGLMFS-----------------------H   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHh-------hHHHHHHHHHHHHHHHHHHHHHc-----------------------c
Confidence            3444444555555544433    332       22234566776666666655432                       2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677789999999999998999999999999999999998888888888888776543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.35  E-value=0.0064  Score=64.53  Aligned_cols=118  Identities=12%  Similarity=-0.012  Sum_probs=76.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840          286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  365 (499)
Q Consensus       286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~  365 (499)
                      .+...+...+..++..+    +.+|++       ..+-+.++.++.+++.+..+..+.......       .   +.. .
T Consensus        61 ~s~~~ig~~~~~~~~G~----l~dr~G-------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~-------~---~~~-~  118 (479)
T PRK10077         61 VASALIGCIIGGALGGY----CSNRFG-------RRDSLKIAAVLFFISALGSAWPEFGFTSIG-------P---DNT-G  118 (479)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHhhcccccccc-------c---cch-h
Confidence            33334445555555444    344432       223366677776666665554321100000       0   001 2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      .+++++..-++.|++.....|....++.+..|++.||.++|++.....+|..++..+...
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~  178 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF  178 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            244556677999999999999999999999999999999999999989998888766543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0017  Score=66.11  Aligned_cols=115  Identities=20%  Similarity=0.193  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-hH
Q 010840          324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KS  402 (499)
Q Consensus       324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m-r~  402 (499)
                      |.+|++++..+-++.++.+                       |.+.++.+=.++|+|..+....+++++.+.-|++. ||
T Consensus       139 m~~Gl~vmf~sTilFafg~-----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~  195 (464)
T KOG3764|consen  139 MVAGLFVMFLSTILFAFGN-----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG  195 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcc-----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence            7899999999988888763                       34567788999999999999999999999999976 69


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010840          403 IGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  479 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~  479 (499)
                      ..||.-.-..++|..+|+.++++++..-+  +                .-=|.+++.++++...+-+++.+.++..+
T Consensus       196 ~vmGialgfislG~lvgPpfGGilYe~~G--k----------------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  196 SVMGIALGFISLGVLVGPPFGGILYEFAG--K----------------SAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHHHHHHHHhccceecCCcccchHhhcC--C----------------cCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            99999999999999999999988775332  1                11378899999999988888777766554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.33  E-value=0.0028  Score=66.41  Aligned_cols=109  Identities=18%  Similarity=0.125  Sum_probs=78.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..++    .+|.       .+.+-+.+|.++.+++.+..+....                   .
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l----~d~~-------grr~~~~~~~~~~~~~~~~~~~~~~-------------------~  124 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWL----SDRF-------GRKKSLLIIALLFVIGAILMGLAAF-------------------A  124 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHh----hhhh-------hhHHHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence            34444445555555555544    3432       2233366777777776666544321                   1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  423 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~  423 (499)
                       .+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus       125 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       125 -LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             -cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             33456777889999999999999999999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.038  Score=58.70  Aligned_cols=86  Identities=13%  Similarity=0.080  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH-H-HHhhccchHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-V-YIQMEHGWGSAFGA  129 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~-~-~i~~~~g~~~~F~i  129 (499)
                      .-++.+|=.+.++..|.......-++.+.-+    ++.  |...=...=.++++|.+++..++ + .++.+-.|++.++.
T Consensus       116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP----~~~--RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~  189 (485)
T KOG0569|consen  116 FEMLILGRLIVGLACGLSTGLVPMYLTEISP----KNL--RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF  189 (485)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhcCh----hhh--ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence            3478888899999999988888888875544    332  44444455667889988885443 3 45666789999988


Q ss_pred             HHHHHHHHHHHHHh
Q 010840          130 LAIAMGISNMLFFI  143 (499)
Q Consensus       130 ~~~~m~l~~i~f~~  143 (499)
                      +.+..++.++...+
T Consensus       190 ~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  190 PLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88877766665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.30  E-value=0.0017  Score=71.92  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH--hhhhh------------
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY--RRNYA------------  349 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~--r~~~~------------  349 (499)
                      ++.+.+.+.-.+..++...+    ..|       ....+-+++|+++.+++.++.++.+..  +++..            
T Consensus        72 ~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        72 LINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             eeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence            45556666666666655442    333       233455889999999999888776532  11100            


Q ss_pred             hhcCCccc-------------ccCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHH
Q 010840          350 ISHGYEFS-------------FLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG  415 (499)
Q Consensus       350 ~~~g~~~~-------------~~~~~~-~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g  415 (499)
                      ++.-+..+             ..+... +..+..++..-++.|+|+....+.+..++.+..|++.|+.++|++.....+|
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG  220 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG  220 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence            00000000             000000 0224455667899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhc
Q 010840          416 CFAASILNSIIK  427 (499)
Q Consensus       416 ~~l~~~l~~~v~  427 (499)
                      ..+|.++...+.
T Consensus       221 ~~lG~llgg~l~  232 (633)
T TIGR00805       221 PAFGYLLGSFCL  232 (633)
T ss_pred             hHHHHHHHHHHH
Confidence            999888877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.29  E-value=0.013  Score=60.80  Aligned_cols=60  Identities=15%  Similarity=0.005  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      .++++...++.|++..+..+.....+.+..|++.|+..+++......+|..+++.+...+
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667788999999998899999999999999999888888777777777777776554

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.28  E-value=0.013  Score=61.05  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=81.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+...+..|+..++    .+|.       +..+-+.+|.++.+++.+..++.                      
T Consensus        57 ~~~~~~~~~~~l~~~~~g~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~----------------------  103 (426)
T PRK12307         57 FLATAAFIGRPFGGALFGLL----ADKF-------GRKPLMMWSIVAYSVGTGLSGLA----------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh-------CChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            34455555555666655443    4443       23344667777777777665554                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus       104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307        104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence             23566777889999999999999999999999999999999999999999999998776553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.28  E-value=0.0028  Score=67.38  Aligned_cols=89  Identities=12%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ++.+-+.+++++.+++.+..+..-.                 ... .+.+.++...++.|++|-+..|.....+.+..|+
T Consensus        92 g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  153 (467)
T PRK09556         92 NTKQFLPFLLILSAICMLGFGASLG-----------------SGS-VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR  153 (467)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHh-----------------ccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc
Confidence            3445577777777776655554311                 011 3466777788999999999999999999999999


Q ss_pred             hhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          399 AMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      +.||..+|++.....+|..+++.+...
T Consensus       154 ~~rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        154 RKRGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             cceeeeEEeeecccchhhhHHHHHHHH
Confidence            999999999999999999999888654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.26  E-value=0.0014  Score=68.98  Aligned_cols=119  Identities=13%  Similarity=0.241  Sum_probs=83.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      ++..+-|..|+.+.++=++.....                       .|+|..+|.-++.++.-..+..+..+++...||
T Consensus       433 iGHv~v~~lgLa~~~~Rf~~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaP  489 (618)
T KOG3762|consen  433 IGHVNVMYLGLACNVGRFLYYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAP  489 (618)
T ss_pred             hcccceeeehhhHHHHHHHHHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            345556778887777766666555                       346777888899999999999999999999999


Q ss_pred             chhhHHHHhHHHHHh-HHHHHHHhhhhhhhc-cccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840          398 DAMKSIGSAYAALAG-GLGCFAASILNSIIK-SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  475 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~-a~g~~l~~~l~~~v~-~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y  475 (499)
                      +++|..++|+.-... ++|.-+|++++..+. ++.                   .--+|+..++.+++.+++++.+-+..
T Consensus       490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-------------------~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-------------------ARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             CcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-------------------hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999876543 444444444443322 111                   12367777777777777777666666


Q ss_pred             ccc
Q 010840          476 KYR  478 (499)
Q Consensus       476 ~~~  478 (499)
                      +++
T Consensus       551 ~~~  553 (618)
T KOG3762|consen  551 KRR  553 (618)
T ss_pred             ccc
Confidence            554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.24  E-value=0.01  Score=60.04  Aligned_cols=135  Identities=13%  Similarity=0.038  Sum_probs=86.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+...+..|+..++    .+|++++       +-+.+|.++.+++.+..++.                      
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~----------------------   88 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIA----------------------   88 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHH----------------------
Confidence            34445555555666665544    4443222       23567777777777666554                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  443 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~  443 (499)
                       .+.+.++...++.|+++-...+.......+..|+ .|+.+++++....++|..+++.+...+..        ..+|   
T Consensus        89 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~---  155 (377)
T TIGR00890        89 -DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVIN--------LEGV---  155 (377)
T ss_pred             -HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHh--------cccH---
Confidence             2355566667799999998888888888877775 59999999999999998876665543321        1123   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          444 NINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                             ...|+..++++++..+..+..
T Consensus       156 -------~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       156 -------PAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHh
Confidence                   335666666666655544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.22  E-value=0.026  Score=58.11  Aligned_cols=109  Identities=13%  Similarity=-0.031  Sum_probs=79.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..++    .+|.       ...+-+.+|.++.+++++..+..                      
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l----~dr~-------g~k~~~~~~~~~~~~~~~~~~~~----------------------   91 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYV----IKRI-------GFNRSYYLASLIFAAGCAGLGLM----------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            44455555555556655444    3442       22334677888877777665543                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+....
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             33666777889999999999999888888999999999999999999999999999887653

>PRK10504 putative transporter; Provisional

Probab=97.22  E-value=0.018  Score=61.05  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +.++++...++.|++.....|.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35666777899999999999999999999999999999999999888899998888876654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.21  E-value=0.022  Score=57.85  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=72.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|.       ...+-+.+|.++.+++.+..+...                     
T Consensus        41 ~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~i~~~~~~~~~---------------------   88 (366)
T TIGR00886        41 NLVAVPVLAGAVLRIILGFL----VDKF-------GPRYTTTLSLLLLAIPCLWAGLAV---------------------   88 (366)
T ss_pred             HhhHHHHHHHHHHHHHHHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            45555666666666665554    3443       222346678888777776665542                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                       .+.++++...++.|++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus        89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence             13566677788899987655 456789999999999999999988666666666655543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.19  E-value=0.0039  Score=66.12  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +.++++..-++.|++|....|.....+.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778899999999999999999999999999999999999999999999998887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.18  E-value=0.024  Score=57.95  Aligned_cols=83  Identities=16%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++.......                       .+.+.++...++.+++.....+.....+.+..|++.|
T Consensus        57 ~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
T PRK11102         57 PVILGGTLVFALAAVACALA-----------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEF  113 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            44667777777776665543                       2245566678899999999999999999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          402 SIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +..+|++....++|..+++.+...+.
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102        114 SRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888876543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0026  Score=69.22  Aligned_cols=239  Identities=17%  Similarity=0.093  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCCC
Q 010840            5 FFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER   84 (499)
Q Consensus         5 ~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~   84 (499)
                      -.-+..+.+|..++-..|+. .+                      ....+.|+...+...+ +..++|++++.|+++...
T Consensus        35 ~~~s~~~il~~e~~e~~a~~-g~----------------------~~nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~   90 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFF-GL----------------------VSNLVTYLTLELHASG-GGAANNVNAFGGTQFLLP   90 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHh-cc----------------------hhHHHHHHHHHhccch-HHHHHHHHHHhhHHHHHH
Confidence            34466778888888877772 22                      1335677777777777 889999999999999762


Q ss_pred             ChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccC-CCCChHHHHHH
Q 010840           85 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQ  163 (499)
Q Consensus        85 ~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~-p~g~pl~~~~~  163 (499)
                        -.-..+...|..+||.||+++++..+.            .|+++...++.++..+-.   .+.... ..++|-+....
T Consensus        91 --l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~  153 (571)
T KOG1237|consen   91 --LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAMIPALLPFMC---KFKPGGNVCESPSKLQLA  153 (571)
T ss_pred             --HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhcCCccc---cCCCCCCcccCcchHHHH
Confidence              222346888999999999999987543            566666666666543332   111111 11222233333


Q ss_pred             HHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhh
Q 010840          164 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL  243 (499)
Q Consensus       164 vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~  243 (499)
                      ++..+++....-                   .++.      +..+++.++...+             ++..+++      
T Consensus       154 ~~~~~l~lia~G-------------------~gg~------r~~~~~fGadQfd-------------~~~~~~~------  189 (571)
T KOG1237|consen  154 VLYGALYLIALG-------------------AGGI------RPCLLAFGADQFD-------------ELDPVEV------  189 (571)
T ss_pred             HHHHHHHHheec-------------------cCCC------CCcchhhcccccC-------------ccCcchh------
Confidence            444444432110                   0000      0011111111111             0111222      


Q ss_pred             hhhhhhHHHHHHHHhhchhhHHHHHhhhcc-cccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh
Q 010840          244 VPIPACTIMLNVILTEFLTLSVQQAYTMNT-HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ  322 (499)
Q Consensus       244 l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~-~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~  322 (499)
                        ......+.|..+.|..+.++.|+..++. +..||.+-.+..+..|.+.++++.+......+|       +   +.-..
T Consensus       190 --~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~-------~---p~gsp  257 (571)
T KOG1237|consen  190 --KGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK-------K---PRGSP  257 (571)
T ss_pred             --hCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee-------C---CCCCc
Confidence              1234567788888999999888876665 456788888888999999999998875543222       1   22226


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 010840          323 RVGIGLAVSILSVIWAGI  340 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~  340 (499)
                      +..+|.++.+++.-..+.
T Consensus       258 ~t~i~~Vlvaa~~k~~~~  275 (571)
T KOG1237|consen  258 KTRIGQVLVAAAFKRKAV  275 (571)
T ss_pred             hhHHHHHHHHHHHHHhcc
Confidence            677888888877766543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.15  E-value=0.0071  Score=64.66  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=81.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-
Q 010840          321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA-  399 (499)
Q Consensus       321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~-  399 (499)
                      .+-+.+|.++.+++.+..++.                       .+.++++...++.++|+-+..|....++.++.|++ 
T Consensus        79 ~~~l~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~  135 (475)
T TIGR00924        79 KKTMVLGGIVLMLGHFMLAMS-----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD  135 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence            344778888888777665543                       22444555677899999999999999999988875 


Q ss_pred             --hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          400 --MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       400 --mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                        .|+...++++....+|..+|+.+...+...        -+|          ..-|...++.++++.++++...+.++
T Consensus       136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~--------~g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAEN--------YGY----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             cccccceehhHHHHHHHHHHHHHHHHHHHHHh--------cCh----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence              488899999999999999999988765421        123          34555556666666666666666654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.14  E-value=0.011  Score=61.30  Aligned_cols=108  Identities=10%  Similarity=0.015  Sum_probs=79.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..++    .+|+       ...+-+..|+.+.+++.+..++.                      
T Consensus        48 ~~~s~~~~~~~l~~~~~g~l----~dr~-------G~r~~l~~~~~l~~~~~~~~~~a----------------------   94 (393)
T PRK09705         48 LLTALPVVTMGGLALAGSWL----HQHV-------SERRSVAISLLLIAVGALMRELY----------------------   94 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHC----------------------
Confidence            44455555666666665554    3442       33345788999988888887764                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++..-++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+...+
T Consensus        95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705         95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             235556677899999999999999999988887 6799999999988888888888776653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.10  E-value=0.011  Score=59.01  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+..++..|+..++    .+|.+       +.+-+.+|.++.+++.+.....                      
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------   84 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYL----SDRFG-------RRRVLLLGLLLFALGSLLLAFA----------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHHhC-------CchhhHHHHHHHHHHHHHHHHh----------------------
Confidence            34445555555666655544    34432       2223667777777777665543                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.+++..+..+....+..+..|++.|+..+|+......+|..+++.+...+.
T Consensus        85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             235667778899999999999999999999999999999999999999999999998887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=97.09  E-value=0.0027  Score=65.66  Aligned_cols=84  Identities=15%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  133 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~  133 (499)
                      .++++..+.++|.|..-|...+...|.++++      +|.+.+.+++...++|..+++.+.+++.++.||+..|.+.++.
T Consensus       304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~  377 (392)
T PRK12382        304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS  377 (392)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            4555667778888887788777777776532      2678999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHh
Q 010840          134 MGISNMLFFI  143 (499)
Q Consensus       134 m~l~~i~f~~  143 (499)
                      .++++++.+.
T Consensus       378 ~~~~~~~~~~  387 (392)
T PRK12382        378 AVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHh
Confidence            8877775553

>TIGR00889 2A0110 nucleoside transporter

Probab=97.08  E-value=0.003  Score=66.34  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHH-HHHHHHHHHHHHHHHHHhhc------cchH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG  124 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~~~~~i~~~------~g~~  124 (499)
                      .+.+++...+.+++.+...++...++.|.+++++      |.+.+.+++ ...++|..+|+.+.+++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            3456677788888888888998899999887432      678899997 56789999999999999887      4699


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010840          125 SAFGALAIAMGISNMLFF  142 (499)
Q Consensus       125 ~~F~i~~~~m~l~~i~f~  142 (499)
                      ..|.++++..+++.+.+.
T Consensus       382 ~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999887776665555433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.07  E-value=0.017  Score=60.34  Aligned_cols=115  Identities=13%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|+.       ..+-+.++.++.+++++..+.....                 ..
T Consensus        56 ~~~~~~~l~~~~~~~~~G~l----~dr~g-------~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~  107 (417)
T PRK10489         56 LSVTLTGGAMFIGLMVGGVL----ADRYD-------RKKLILLARGTCGLGFIGLALNAFL-----------------PE  107 (417)
T ss_pred             HHHHHHHHHHHHHHHhhHHH----hhhcC-------CceEEEehHHHHHHHHHHHHHHHHc-----------------CC
Confidence            44555555666666655443    34432       2222445666666666554432110                 01


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.+++..+..+.....+.+..|++.|+...+++....++|..+|+.+...+.
T Consensus       108 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        108 -PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence             345666677888899999999999999999999999999999998888888888888876543

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.05  E-value=0.039  Score=58.80  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  402 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~  402 (499)
                      -+.++.++.+++.+..++.                       .+.++++...++.|++.....+.....+.+..|++.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~  143 (496)
T PRK03893         87 AMVISIVLFSVGTLACGFA-----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN  143 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3566777777766665543                       33566777889999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          403 IGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ..+|++....++|..+++.+...+.
T Consensus       144 ~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        144 KASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998877643

>PTZ00207 hypothetical protein; Provisional

Probab=97.02  E-value=0.031  Score=61.08  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=85.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      .+.+-+.+|.++.+++.+..++....                ... .+.+.+....++.|+|+.+..+.....+.+..| 
T Consensus        89 G~R~vllig~ll~~iG~ll~ala~~~----------------~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-  150 (591)
T PTZ00207         89 GPRPIFVLSMTVFCLGTLLFALTFQE----------------VIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-  150 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhcc----------------ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence            44555788999999988887764210                011 346667778899999999999999988888887 


Q ss_pred             hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      +.||.++|++....++|..+.+.+...+.. .        +|          ..++++++++.++..++.+.+.+...
T Consensus       151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~--------~~----------~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D--------NT----------SAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hH----------HHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            679999999999999999864444432210 0        12          34677777877777666666555543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.02  E-value=0.027  Score=59.66  Aligned_cols=82  Identities=11%  Similarity=-0.010  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++.+..++...                  .. .+.++++...++.++++....|.....+.+..|++.|
T Consensus        94 ~~l~~~~~~~~i~~~~~~~~~~------------------~~-~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r  154 (452)
T PRK11273         94 VFLPAGLILAAAVMLFMGFVPW------------------AT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  154 (452)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhc------------------cc-ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHH
Confidence            3466777777777766655421                  00 2355666778899999998888877888889999999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhh
Q 010840          402 SIGSAYAALAGGLGCFAASIL  422 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l  422 (499)
                      +..+|++.....+|..+.+.+
T Consensus       155 ~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        155 GGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH
Confidence            999999988888886544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.99  E-value=0.72  Score=49.68  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.+.+.=.+.+++.++.-.+...+++|.+.++.      |...-++ +.....|+.+++.+.+|+-+  +|++.+++.
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~  240 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII  240 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            45677777788999999999999999999998644      4566666 77778888889999998875  899999887


Q ss_pred             HHHHHHHHHH
Q 010840          131 AIAMGISNML  140 (499)
Q Consensus       131 ~~~m~l~~i~  140 (499)
                      .+..++.++.
T Consensus       241 ~~~~~~~~~~  250 (521)
T KOG0255|consen  241 SIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHH
Confidence            7776666555

>TIGR00898 2A0119 cation transport protein

Probab=96.95  E-value=0.0063  Score=65.19  Aligned_cols=108  Identities=12%  Similarity=0.017  Sum_probs=77.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +.+++..+..++..++...+    ..|.++       .+-+.++.++.+++.+..++.                      
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l----~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~----------------------  177 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYL----SDRFGR-------KKVLLLSTLVTAVSGVLTAFS----------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHh----hhhccc-------hHHHHHHHHHHHHHHHHHHHc----------------------
Confidence            44555556666666665543    344321       122555666666555544432                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                       .+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.+...
T Consensus       178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3467777888999999999999999999999999999999999999999999888877654

>TIGR00901 2A0125 AmpG-related permease

Probab=96.93  E-value=0.036  Score=56.27  Aligned_cols=63  Identities=16%  Similarity=0.042  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .+.+++...+++.+++-.+..|...+++.+..|++.|+...|+.....++|..+++.+...+.
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346666677788888888999999999999999999999999999999999999988876654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.92  E-value=0.024  Score=59.74  Aligned_cols=83  Identities=12%  Similarity=0.015  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 010840          324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI  403 (499)
Q Consensus       324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~  403 (499)
                      +.+|.++.+++.+..+....                  .. .+.+.+....++.++++....+.....+.+..|++.|+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~  154 (438)
T TIGR00712        94 LPAGLILSAAVMLLMGFVPW------------------AT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGT  154 (438)
T ss_pred             hHHHHHHHHHHHHHHhcccc------------------cc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchh
Confidence            55677777776665543311                  01 234445566788999999988989999999999999999


Q ss_pred             HHhHHHHHhHHHHHHHhhhhhh
Q 010840          404 GSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       404 ~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      .+|++....++|..+++.+...
T Consensus       155 ~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       155 IVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHH
Confidence            9999999999999888776553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.87  E-value=0.027  Score=58.46  Aligned_cols=107  Identities=11%  Similarity=0.021  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhhhhcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHH
Q 010840          299 LYYSTFVPLCRRITGHPRGASQLQR-VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI  377 (499)
Q Consensus       299 l~~~i~~p~~~r~~~~~~~~s~l~r-i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~  377 (499)
                      +...+|-|+..|.....  ....++ +.++.++.+++++..++.+.                   . .+++++...+++.
T Consensus        47 ~~~~l~g~~~Dr~~~~~--~g~rr~~l~~~~~~~~l~~~~l~~~~~-------------------~-~~~~~l~~~~~~~  104 (402)
T PRK11902         47 IFKFLWAPLMDRYTPPL--LGRRRGWLLLTQVGLAASIAAMAFCPP-------------------H-AALWPLAGLAVLV  104 (402)
T ss_pred             HHHHHHHHHHHcccccC--CCcchhHHHHHHHHHHHHHHHHHhcCc-------------------c-chHHHHHHHHHHH
Confidence            33445566666642110  122333 66666777666666554310                   1 3466667777888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          378 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       378 ~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ++......|...+++.+..|++.|+.+.++.....++|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            89999999999999999999999999999999989999999988776543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.85  E-value=0.17  Score=54.52  Aligned_cols=104  Identities=16%  Similarity=0.254  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      +++++.+++.+|.++...+.                            +...+++|=.+.++|.|+..-.+..+++|.-+
T Consensus       121 ~l~~~~~~~~iG~ii~~~a~----------------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap  172 (513)
T KOG0254|consen  121 TLLLAVVLFLIGAIIIALAP----------------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAP  172 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhh----------------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCC
Confidence            67888999999999888762                            34688999999999999988777767766654


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML  140 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~~~~m~l~~i~  140 (499)
                      .+      .|...-+.+.+++++|.+++..+....++. ++|+..+++..+..++-.+.
T Consensus       173 ~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  173 AH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             hh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            32      267888889999999999995555545433 48998887665555444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.84  E-value=0.74  Score=47.76  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=70.3

Q ss_pred             HHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHH
Q 010840          302 STFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAE  381 (499)
Q Consensus       302 ~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE  381 (499)
                      .++.|.+.++      ....+-+-+|+++..+..+.+-..+.                   + . -+|..-  ++.+..-
T Consensus       305 ~ii~g~Ld~r------fg~k~vl~~~lvi~~~~~~~~~~~~~-------------------~-~-~f~i~g--ll~g~s~  355 (438)
T COG2270         305 AIIAGFLDER------FGSKPVLMIGLVILSIAALYLIFLEG-------------------E-L-DFWILG--LLVGTSL  355 (438)
T ss_pred             HHHHHHHHHH------hCCceeehHHHHHHHHHHHHHHHccc-------------------c-H-HHHHHH--HHHHHhc
Confidence            4455555543      23335566777777766666554431                   1 2 234332  4455555


Q ss_pred             HHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccC
Q 010840          382 VFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  431 (499)
Q Consensus       382 ~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~  431 (499)
                      -=+....=++..+.+|++..+...|+|.++.-.++.+|+.+++++..+|+
T Consensus       356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            55666777899999999999999999999999999999999999887764

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.80  E-value=0.064  Score=55.37  Aligned_cols=61  Identities=7%  Similarity=-0.016  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .++++...++.|++.....+...++..+..|++.++..++.+.....+|..+++.+...+.
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777888999988888888889999999999999999998888888888887776543

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.75  E-value=1  Score=47.88  Aligned_cols=82  Identities=16%  Similarity=0.074  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH---
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF---  127 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F---  127 (499)
                      +...+.+.-++.++|.|..- .....+..-+++   +|   |.++..++-.+.++|.++++.+++++. +.||+.-+   
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~---kE---R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP---SR---YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            35567777788999999987 888888888883   32   688899999999999999999999864 67887544   


Q ss_pred             HHHHHHHHHHHHH
Q 010840          128 GALAIAMGISNML  140 (499)
Q Consensus       128 ~i~~~~m~l~~i~  140 (499)
                      .|....+.+++++
T Consensus       186 ~Isl~s~~~a~~~  198 (511)
T TIGR00806       186 IISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHH
Confidence            3555555555553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.16  Score=56.23  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------  119 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~-----------  119 (499)
                      ...++++|..+.++|.-    .+.+++.-..||...++  +...++.+.|..--+|-++|.+++++.-+           
T Consensus       236 ~~llff~~q~l~GIG~T----pi~tlGisYiDDnvk~~--~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~  309 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGAT----PIFTLGISYIDDNVKKK--NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG  309 (735)
T ss_pred             hHHHHHHHHHHhhcCCC----CCccCCCcccccccccc--CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence            34478888888888854    45556665555543322  24678888888888999999888887532           


Q ss_pred             -------cc-chHHHHHHHHHHHHHHHHHHHhc
Q 010840          120 -------EH-GWGSAFGALAIAMGISNMLFFIG  144 (499)
Q Consensus       120 -------~~-g~~~~F~i~~~~m~l~~i~f~~g  144 (499)
                             .+ .||+||++++..++++.+.+++.
T Consensus       310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f  342 (735)
T KOG3626|consen  310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF  342 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                   13 49999999999999888866653

>PTZ00207 hypothetical protein; Provisional

Probab=96.72  E-value=1.2  Score=48.80  Aligned_cols=109  Identities=10%  Similarity=0.045  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..+|+++..++.. ... +                    .+.+.+++...+.++|.|.+.+.....+.+.|+
T Consensus        93 vllig~ll~~iG~ll~ala~~-~~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp  150 (591)
T PTZ00207         93 IFVLSMTVFCLGTLLFALTFQ-EVI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP  150 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-ccc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            577889999999998888633 111 1                    246677888889999999888888888888885


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIA-MGISNMLFF  142 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i-~~~~~~~i~~~~g~~~~F~i~~~~-m~l~~i~f~  142 (499)
                      +       +|.....+...+.++|+.+ +++...++.+  +|+..|.+.++. .+++++...
T Consensus       151 ~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        151 S-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             h-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHh
Confidence            2       1577999999999999875 6666666654  455555544443 334444333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.72  E-value=0.62  Score=48.17  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHH
Q 010840           58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAM  134 (499)
Q Consensus        58 ~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g---~~~~F~i~~~~m  134 (499)
                      .=.++++|-|-| +.-.+....-|++++      +..+..++= +-|+|..+...+.+.+....|   |+..-.+..+.+
T Consensus       111 ~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l  182 (417)
T COG2223         111 IGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL  182 (417)
T ss_pred             HHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            334455554444 444556777777543      466777777 889999999999999988888   898888888888


Q ss_pred             HHHHHHHHhccc
Q 010840          135 GISNMLFFIGTP  146 (499)
Q Consensus       135 ~l~~i~f~~g~~  146 (499)
                      +++.+.+.++.+
T Consensus       183 ~v~~v~~~~~~~  194 (417)
T COG2223         183 AIAAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHHHhC
Confidence            888877766543

>PRK11043 putative transporter; Provisional

Probab=96.71  E-value=0.077  Score=54.88  Aligned_cols=82  Identities=16%  Similarity=0.016  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++.+..+..                       .+.++++...++.|++.....+.....+.+..|++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~  128 (401)
T PRK11043         72 PVLLAGLSLFALGSLGMLWV-----------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKA  128 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHH
Confidence            34666776666666554432                       3356667777888998888888888899999999988


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          402 SIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +...+......++|..+++.+...+
T Consensus       129 ~~~~~~~~~~~~~~~~~g~~i~~~l  153 (401)
T PRK11043        129 NRVFATIMPLVALSPALAPLLGAWL  153 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777777777777776554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.67  E-value=0.057  Score=58.00  Aligned_cols=61  Identities=16%  Similarity=-0.008  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +.++++..-++.|+++....+....+..+..|++.||..++++.....+|..+++.+...+
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999999999999999999999999999999999988887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.66  E-value=0.046  Score=57.98  Aligned_cols=108  Identities=15%  Similarity=0.068  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLI-QYCLIGIAEVFCIVGLLEFLYEEAPDAM  400 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~-~~~l~~igE~~~~p~~~ef~~~~aP~~m  400 (499)
                      +-+.+|.++.+++.+..+...                       +.+.++. .-++.|+++....+.....+.+..| +.
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~  140 (455)
T TIGR00892        85 PVVIAGGLLASLGMILASFSS-----------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR  140 (455)
T ss_pred             HHHHhhHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh
Confidence            345667777766666554431                       2333332 2367788888766666677777665 68


Q ss_pred             hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          401 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       401 r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                      |+..+|++....++|..+++.+...+...        -+|          ..-|++.++++++..+..++.
T Consensus       141 r~~a~g~~~~~~~~g~~~~~~l~~~l~~~--------~gw----------r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       141 RPLANGLAMAGSPVFLSTLAPLNQYLFES--------FGW----------RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHH--------hCh----------HHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999888877654321        124          235666666666555544333

>PRK10133 L-fucose transporter; Provisional

Probab=96.63  E-value=0.15  Score=53.80  Aligned_cols=110  Identities=13%  Similarity=0.053  Sum_probs=77.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840          285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  364 (499)
Q Consensus       285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~  364 (499)
                      +.+...+...+..|+..+    +.+|+       ...+-+.+|+++.+++.+.......                   . 
T Consensus        66 ~~~~~~~g~~i~~~~~g~----l~dr~-------G~r~~l~~g~~~~~~~~~l~~~~~~-------------------a-  114 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGI----LMKKL-------SYKAGIITGLFLYALGAALFWPAAE-------------------I-  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHHh-------------------c-
Confidence            344445555566665544    34543       2334477888888887765432110                   0 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      .+.++++...++.|+|.....+....++.+.+|++.+...++++....++|..+++.+...
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777889999999999999999999998888888777888888888888888877654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.58  E-value=0.099  Score=54.42  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCC-cccccCc
Q 010840          368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPN-WLAQNIN  446 (499)
Q Consensus       368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~-w~~~~ln  446 (499)
                      +++...-.+++..+.-..|++.|+.-+..=+...+...|+-.+   .|...+..+....+...+  ..+.++ |.+.   
T Consensus       360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~~~~~--~~~~~~~~~~~---  431 (480)
T KOG2563|consen  360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMGILAE--DLGPPGNTFPA---  431 (480)
T ss_pred             EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHHHHhh--ccCCCCCCccc---
Confidence            3344445678888889999999999988888888888876544   444444444444332221  110111 2111   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 010840          447 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH  483 (499)
Q Consensus       447 ~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~  483 (499)
                             -+.++..+.+.+++-.+....|+++++|.+
T Consensus       432 -------~i~~~~~~~l~~~lva~~r~~y~R~~~e~~  461 (480)
T KOG2563|consen  432 -------NIFLTVSALLGAILVAFFRPDYRRLRAEAG  461 (480)
T ss_pred             -------hhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence                   122445555556666677778887776654

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.58  E-value=0.2  Score=53.82  Aligned_cols=107  Identities=14%  Similarity=0.149  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhhhcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHH
Q 010840          299 LYYSTFVPLCRRITGHPRGASQLQR-VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI  377 (499)
Q Consensus       299 l~~~i~~p~~~r~~~~~~~~s~l~r-i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~  377 (499)
                      +...+|-|+..|++.. + ....++ +.++.++.+++....++.+.                   . .+.+|+....++.
T Consensus        60 ~~~~l~gpl~Dr~~~~-~-~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~-~~l~~l~~~~~l~  117 (491)
T PRK11010         60 VFKFLWSPLMDRYTPP-F-LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------G-TQLRWLAALAVVI  117 (491)
T ss_pred             HHHHHHHHHHHccccc-C-CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------c-chHHHHHHHHHHH
Confidence            4556677777775321 0 122222 55666666666655554310                   1 4577888888899


Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          378 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       378 ~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +++-....+...++..+..|++.|+...|+......+|..+++.+...+.
T Consensus       118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.52  Score=49.84  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=94.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC--C
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT--A  361 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~--~  361 (499)
                      -+..++.+.+-+...+..-.+.++.||. ++   +....-+.+|.++..++++..-+.      ...+..+.++.+.  .
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~  348 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL  348 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence            4455555555555555444444544443 22   344444777777666555443322      1111111010000  0


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcc
Q 010840          362 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  441 (499)
Q Consensus       362 ~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~  441 (499)
                      .. -+...-...++++|++|.+....-+..+....| +-|..+-+++-+..++++.++.+.....               
T Consensus       349 ~~-~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~---------------  411 (461)
T KOG3098|consen  349 FT-PSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL---------------  411 (461)
T ss_pred             cc-cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence            00 122223345799999999999999999999994 4566777788888888887755543210               


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010840          442 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  479 (499)
Q Consensus       442 ~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~  479 (499)
                             .+..+...+.+.+.+..+++..+.++++...
T Consensus       412 -------~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~  442 (461)
T KOG3098|consen  412 -------LLYIYTLGLPIFCVIATTIFFIVAERTQAME  442 (461)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1233556677888888888988988886543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.51  E-value=0.014  Score=64.51  Aligned_cols=153  Identities=10%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH----hhhhhh-----hcC-------Ccc---c------ccC---CCCcchHH-H
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERY----RRNYAI-----SHG-------YEF---S------FLT---AMPDLSAY-W  369 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~----r~~~~~-----~~g-------~~~---~------~~~---~~~~~s~~-w  369 (499)
                      ..++-|++|.++++++.++.++-+..    +++...     +..       +.+   +      ++.   ...+..+| .
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            44566999999999999998876543    111110     000       000   0      000   01101122 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc----c-cCCC--CCCCCCccc
Q 010840          370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS----V-TGNP--KKGQPNWLA  442 (499)
Q Consensus       370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~----~-t~~~--~~~~~~w~~  442 (499)
                      ++..-++.|+|+.-+.+.|..++.+.+-++.-.+|.|+.+....+|-.+|-+++++..+    . ..++  ...||.|+.
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG  319 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence            55678999999999999999999999999999999999998887776666666555432    2 1111  122566642


Q ss_pred             ccCccchhHH-HHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          443 QNINTGRFDY-LYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       443 ~~ln~~~l~~-~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                             ..| =|.+.++++++..+-++.+-|.+.+.
T Consensus       320 -------AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  320 -------AWWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence                   122 23456667777777777777777643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.51  E-value=0.00041  Score=75.15  Aligned_cols=107  Identities=15%  Similarity=0.052  Sum_probs=3.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH----hhhhhh-----h----cCC--------cc------cccCCCCcchHHHHH
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERY----RRNYAI-----S----HGY--------EF------SFLTAMPDLSAYWLL  371 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~----r~~~~~-----~----~g~--------~~------~~~~~~~~~s~~wli  371 (499)
                      ..++-+++|.+++++|.++.++-+..    +.+...     +    +-+        .+      .......+...++++
T Consensus        66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  145 (539)
T PF03137_consen   66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI  145 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence            45566999999999999888765432    111110     0    001        00      000011112346677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      ...++.|+|..-.++.|.+++.+.++++.-++|+|+.+....+|..+|-++.+.
T Consensus       146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~  199 (539)
T PF03137_consen  146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF  199 (539)
T ss_dssp             ------SSS---------------------------------------------
T ss_pred             HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence            888999999999999999999999999999999999999988888777666544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.057  Score=57.84  Aligned_cols=95  Identities=14%  Similarity=0.178  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  446 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln  446 (499)
                      .+-++..-+++|+.|-...|........-=.++.|+..+|+|+...++|+.+|+++...+.+...  ..+..+|      
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW------  205 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGW------  205 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCc------
Confidence            45566678999999999999999999999999999999999999999999999999887543221  1123456      


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840          447 TGRFDYLYWLLAVLSVINFCAFLYSAY  473 (499)
Q Consensus       447 ~~~l~~~f~~la~l~~~~~~~~~~~~~  473 (499)
                          -+.|..-++++++..++-.+.-+
T Consensus       206 ----~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  206 ----RWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             ----eeehhHHHHHHHHHHheEEEEec
Confidence                45788888888777765444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.50  E-value=0.04  Score=58.54  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  402 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~  402 (499)
                      -+.+|++.-.+++.+.++.+.                        -|++-...+....-.+..|...+++.+++.++-+|
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g  365 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE------------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQG  365 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc------------------------chhhhHHHHHHHhhcchhHHHHhHHHhhccccccc
Confidence            477888888888888887632                        24444556666667889999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHhhhhhhhccccC
Q 010840          403 IGSAYAALAGGLGCFAASILNSIIKSVTG  431 (499)
Q Consensus       403 ~~~gl~~l~~a~g~~l~~~l~~~v~~~t~  431 (499)
                      ..+++.....++.+.+++.+.+.+...+.
T Consensus       366 ~v~~~is~i~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  366 KVFGIISGIEGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999888766553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.48  E-value=0.11  Score=53.47  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  445 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l  445 (499)
                      +.++++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..+++.+...+..        .-+|     
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--------~~gW-----  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--------AGGL-----  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------ccch-----
Confidence            477888889999999986 45566666889999999999999999999999999988877542        1246     


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840          446 NTGRFDYLYWLLAVLSVINFCAFLYSA  472 (499)
Q Consensus       446 n~~~l~~~f~~la~l~~~~~~~~~~~~  472 (499)
                           ...|...++++++..++.....
T Consensus       144 -----r~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903       144 -----QLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHc
Confidence                 2356666777666555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.46  E-value=0.055  Score=57.72  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh--HHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr--~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      ++.+..+.+..++--...+..-+++.+..|++.|  +.+.+......++|+.+|..+..+
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555556666667778999999999876  578888888889999999888765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00897 2A0118 polyol permease family

Probab=96.37  E-value=0.23  Score=51.49  Aligned_cols=112  Identities=13%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+...+..|+..++    .+|.       +..+-+.+|.++.+++++.......                  ..
T Consensus        52 ~~~~~~~~~~~i~~~~~g~l----~dr~-------g~k~~l~~~~~~~~~~~~~~~~~~~------------------~~  102 (402)
T TIGR00897        52 SAFTLYGIAAAISAWISGVV----AEII-------GPLKTMMIGLLLWCVGHAAFIVFGL------------------GH  102 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence            33444555555565655443    4442       3334466777777776544322211                  01


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHH-HHHhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC-FAASILNSI  425 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~-~l~~~l~~~  425 (499)
                       .+++.++...++.|++.....+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus       103 -~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       103 -ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             -ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2345555678888998888888888888899999999999999999988886 466666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.27  E-value=0.13  Score=53.48  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...++.|+..++    ..|+.       ..+-+.++.++.+++.+..+..                      
T Consensus        42 ~~~~~~~l~~~l~~~~~G~l----aDr~g-------rr~vl~~~~~~~~~~~~~~~~~----------------------   88 (393)
T PRK11195         42 LLQMFFVLAYIVLAPFVGAF----ADSFP-------KGRVMFIANGIKLLGCLLMLFG----------------------   88 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHh----hhccC-------CchhhHHHHHHHHHHHHHHHHH----------------------
Confidence            45555666667777776554    44432       2233556666655554443322                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.   +...+++|+++.+..|.....+.+..|++.|+.+.|+......+|..+|+.+..++.
T Consensus        89 -~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         89 -IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             -HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             112   334578999999999999999999999999999999999988888899888877643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.26  E-value=0.074  Score=57.11  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ...+-+.+|.++.+++.+.+++...                     . ..-++...+++++|+-+..|....++.++-|+
T Consensus        79 G~r~~~~~g~~~~~~g~~~~~~~~~---------------------~-~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~  136 (489)
T PRK10207         79 GTKRTIVLGAIVLAIGYFMTGMSLL---------------------K-PDLIFIALGTIAVGNGLFKANPASLLSKCYPP  136 (489)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcc---------------------c-hhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence            3445578888888888777665310                     0 11133457788999999999999999999987


Q ss_pred             h--hhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          399 A--MKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       399 ~--mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +  .|+...+++++...+|..+|+.+...+.
T Consensus       137 ~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        137 KDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             CchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            7  4577899999999999999988877654

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.26  E-value=0.17  Score=53.65  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840          320 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  399 (499)
Q Consensus       320 ~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~  399 (499)
                      ..+-+.++++..++..+..++.                       .|.+.+...-++.|++|.... .....+++-.|++
T Consensus        91 ~K~vL~l~~l~Wsl~t~L~~fa-----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k  146 (511)
T TIGR00806        91 YKPVLVLQALSFVCVWLLLLLG-----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS  146 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Confidence            3445677777777666666654                       347778888999999999999 9999999999999


Q ss_pred             hhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          400 MKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       400 mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      .|+.++|++..+..+|..+++.++.++
T Consensus       147 ER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       147 RYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999873

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.24  E-value=0.15  Score=54.50  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  401 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr  401 (499)
                      +-+.+|.++.+++.+..+..                       .+.+.++...++.|+++....+ ....+.+..|++.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~-----------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~r  157 (476)
T PLN00028        102 YGSAFLLMLTAPAVFCMSLV-----------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIV  157 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhhe
Confidence            34566777666665554443                       2244455567889999876544 45678899999999


Q ss_pred             HHHHhHHHHHhHHHHHHHhhhhh
Q 010840          402 SIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       402 ~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                      |..+|++.....+|..+++.+..
T Consensus       158 g~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        158 GTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988666666666655543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.18  E-value=0.13  Score=61.07  Aligned_cols=63  Identities=13%  Similarity=0.049  Sum_probs=58.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .|+++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+++.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            347888888999999999999999999999999999999999999999999999999988764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.18  E-value=0.2  Score=59.38  Aligned_cols=62  Identities=11%  Similarity=-0.004  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      ++++++...++.|++..+..|....++.+..|++.|+.++|+.....++|..+|+.+...+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            36777788899999999999999999999999999999999999999999999988887654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.08  E-value=0.16  Score=54.77  Aligned_cols=117  Identities=11%  Similarity=0.069  Sum_probs=77.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840          321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM  400 (499)
Q Consensus       321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m  400 (499)
                      .+-+.+|.++.+++....++..                      .+.+++....++.++|.-+..|....++.++-|++.
T Consensus        88 r~~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~  145 (500)
T PRK09584         88 KRVIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD  145 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence            3447778877777766555421                      113344456778899999888988899999887643


Q ss_pred             --hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840          401 --KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  477 (499)
Q Consensus       401 --r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~  477 (499)
                        ++...++++....+|..+|+.+...+...        -+|          .+-|++.++..++..+.++...++++.
T Consensus       146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~--------~g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAK--------YGW----------SVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHHHHHHHHh--------hCH----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence              44577888888999999998887765421        123          334555565566666666666555554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.05  E-value=0.047  Score=55.55  Aligned_cols=92  Identities=15%  Similarity=0.184  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840          321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM  400 (499)
Q Consensus       321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m  400 (499)
                      .+-+.+|.++.+++.+..+.....           ..   ... ...++++...++.|++.....+.....+.+..|++.
T Consensus        65 r~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T TIGR00883        65 KKTLVITLLMMGIGTLLIGLLPSY-----------AT---IGI-WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCh-----------hh---hHH-HHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence            344667777777776666554210           00   000 112346667789999999999999999999999999


Q ss_pred             hHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          401 KSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       401 r~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      |+.+++++.....+|..+++.+...+.
T Consensus       130 r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       130 RGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.94  E-value=0.33  Score=49.27  Aligned_cols=90  Identities=12%  Similarity=-0.014  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHH--HhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG--SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  444 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~--~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~  444 (499)
                      .++++..-++.+.++....|...+...+..|++.|+..  .+......++|..+++.+.......        -+|    
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------~~~----  154 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG--------FGF----  154 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh--------ccc----
Confidence            45555555677777777888888888888888776643  5666666777888877776654310        124    


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840          445 INTGRFDYLYWLLAVLSVINFCAFLYSAYR  474 (499)
Q Consensus       445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~~  474 (499)
                            ...|++.+.++++..++.+...++
T Consensus       155 ------~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       155 ------TVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                  235666666666555554443343

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.90  E-value=0.11  Score=55.20  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=88.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ...+-+.++.++.+++-+..-....                     .+.+.++..=+++|++|-...|.......+-+|+
T Consensus       101 G~r~v~~~~~~~sa~~t~l~P~aa~---------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~  159 (466)
T KOG2532|consen  101 GARRVFFISGLISALLTLLTPLAAS---------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP  159 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHH---------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence            4456688888888877666555432                     3445667788999999999999999999999999


Q ss_pred             hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840          399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  473 (499)
Q Consensus       399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~  473 (499)
                      +.|++..++......+|..++..+.+..-..       +-+|          ..-|.+.++++++-.+++..+.+
T Consensus       160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-------~~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  160 NERSTFIAILTAGSQLGTIITMPVSGLLCES-------SLGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-------CCCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999998889999888777664421       2357          34566677777776666666554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.82  E-value=0.15  Score=54.59  Aligned_cols=108  Identities=17%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHH
Q 010840          297 LSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCL  376 (499)
Q Consensus       297 ~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l  376 (499)
                      .|+-.-+.-++..|+       ...+-+.+++++.+++.+..++.+.+-     .-|         . ..+.+++..-++
T Consensus        70 ~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~-~a~~~l~~~R~l  127 (490)
T PRK10642         70 RPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYA-----TIG---------I-WAPILLLLCKMA  127 (490)
T ss_pred             HHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHH-----HHH---------H-HHHHHHHHHHHH
Confidence            334444444556664       334557788888888887777653210     000         0 112246777899


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          377 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       377 ~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      .|+|+-...+....++.+..|++.||.+++++.....+|..+|+.+..++
T Consensus       128 ~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        128 QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888888666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.81  E-value=0.2  Score=52.54  Aligned_cols=108  Identities=10%  Similarity=0.038  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHH
Q 010840          297 LSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCL  376 (499)
Q Consensus       297 ~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l  376 (499)
                      .|+-..+.-++..|+       ...+-+.+++++.+++.+..++....           ..   ... .++.+++..-++
T Consensus        76 ~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~-~~~~~l~~~R~l  133 (432)
T PRK10406         76 RPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGY-----------ET---IGT-WAPALLLLARLF  133 (432)
T ss_pred             HHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCc-----------hh---HHH-HHHHHHHHHHHH
Confidence            344444555666664       33345777888877777666554210           00   000 234567777889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          377 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       377 ~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +|+|+-...|....++.+..|++.||.+++++......|..++..+...+
T Consensus       134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888888877665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.79  E-value=0.68  Score=47.85  Aligned_cols=93  Identities=13%  Similarity=-0.010  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL---LIQYCLIGIAEVFCIVGLLEFLYEEAPDA  399 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wl---i~~~~l~~igE~~~~p~~~ef~~~~aP~~  399 (499)
                      -|-.|.++.+.+...+...-...- ...+.        ... .++.|+   ...|.+.|+|=-...-..+++..+.+||+
T Consensus        52 yI~~G~~~~~~g~~~ap~a~~~l~-~~~~~--------~~~-~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~  121 (403)
T PF03209_consen   52 YIWGGTLLQAGGLAIAPFALLLLA-ESGQQ--------SSG-PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE  121 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc-ccccc--------ccc-ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh
Confidence            377888888887777665433210 00000        011 223443   46889999999999999999999999999


Q ss_pred             hhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          400 MKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       400 mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      -|+...++-+.+.=+|..+++.+...
T Consensus       122 ~R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen  122 RRPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998999998877654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00896 CynX cyanate transporter

Probab=95.71  E-value=0.3  Score=49.57  Aligned_cols=107  Identities=17%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+.+.+...+..|+..++.    +|+       ...+.+.+|.++.+++.+.. ..                      
T Consensus        39 ~~~s~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~~~-~~----------------------   84 (355)
T TIGR00896        39 LLTALPVLCFAVLAPLAPWLA----RRF-------GEERSVAAGLLLIAAGILIR-SA----------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH----HHh-------CchHHHHHHHHHHHHHHHHH-Hh----------------------
Confidence            455666667777777766643    332       22233566766655554432 11                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+...+
T Consensus        85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2245556667889999988888777788777774 799999999998889988888776544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.66  E-value=0.046  Score=57.12  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      .++....+.+++.+...+.....+.+.++++.      +...+.. +..+.++|..+++.+.+++.+..||+..|.+.++
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~  390 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG  390 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            44455566667777666666677777776432      3344444 5567789999999999999999999999988777


Q ss_pred             HHHHHHHHHH
Q 010840          133 AMGISNMLFF  142 (499)
Q Consensus       133 ~m~l~~i~f~  142 (499)
                      ..++..++.+
T Consensus       391 ~~~i~~~~~~  400 (420)
T PRK09528        391 IVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHH
Confidence            6665554433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.60  E-value=0.25  Score=51.20  Aligned_cols=84  Identities=12%  Similarity=0.040  Sum_probs=74.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      -+|.+=|++|++++++.++..++.                       .|.+.+...+++.|.-+-.-.|.....++.--|
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs-----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs  147 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS-----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFS  147 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC
Confidence            456666999999999999988765                       356667778899999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                      ++.||...|+|..+..+|..+.+.+..
T Consensus       148 r~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         148 RKERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             ccccCceEEEehhhhhcccchHHHHHH
Confidence            999999999999999999999998883

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.59  E-value=0.58  Score=51.22  Aligned_cols=121  Identities=12%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010840          270 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA  349 (499)
Q Consensus       270 ~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~  349 (499)
                      .++.++|+-+ ...|+...+.+..-+..|++.++---+.||           .-+.+|.++..+|+++.+-.+       
T Consensus        69 ~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~-------  129 (599)
T PF06609_consen   69 YINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ-------  129 (599)
T ss_pred             HHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------
Confidence            3456666532 234777777877778888877765444444           236677888888887766331       


Q ss_pred             hhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          350 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       350 ~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                                      |+.-++-..++.|+|--..... ...+.+..|.+.|....++.....-+....|+.+.+..
T Consensus       130 ----------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  130 ----------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             ----------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence                            2233566777877775555443 44578899999998887776665555555666666543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09952 shikimate transporter; Provisional

Probab=95.45  E-value=0.25  Score=52.02  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHH
Q 010840          296 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYC  375 (499)
Q Consensus       296 l~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~  375 (499)
                      ..|+-..+.-++..|+       ...+-+.+++++.+++.+..++....-     .-+         . .+++.++..-+
T Consensus        76 ~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~-~~~~~l~~~R~  133 (438)
T PRK09952         76 FRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFS-----TIG---------W-WAPVLLVTLRA  133 (438)
T ss_pred             HHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHH-----HHH---------H-HHHHHHHHHHH
Confidence            3455444555566664       333456677777777766665542110     000         0 11224566778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          376 LIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       376 l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +.|+++-...|....++.+..|++.||.+++......++|..++..+...+
T Consensus       134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987766554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.34  E-value=0.75  Score=49.85  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840          283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  362 (499)
Q Consensus       283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~  362 (499)
                      +..+....+..+++.|+-..+.    .|+       +..+-+..+-++.++..+..++....                 .
T Consensus        48 alv~~a~~LP~~Llsl~aG~la----Dr~-------drrrili~~~~~~~~~~~~L~~l~~~-----------------~   99 (524)
T PF05977_consen   48 ALVQAASTLPILLLSLFAGALA----DRF-------DRRRILILSQLLRALVALLLAVLAFF-----------------G   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hcc-------cchHHHHHHHHHHHHHHHHHHHHHHh-----------------C
Confidence            3566777777777777765543    332       22222344444444443333333221                 1


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      . .++|.++..-++.|++..+..|.-.+.+-+..|++.-..+.++......++..+|+.+.+++-
T Consensus       100 ~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  100 L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            1 567777888899999999999999999999999999888888888888888877777766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=95.31  E-value=0.88  Score=47.02  Aligned_cols=89  Identities=11%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh--HHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  444 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr--~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~  444 (499)
                      .++++....+.+..+....|.....+.+..|++-|  +.+.+......++|..+++.+...+...        -+|    
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------~gw----  172 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--------FSF----  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--------cCh----
Confidence            44444444555555667788888888877766544  4566777778888888888887765421        134    


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840          445 INTGRFDYLYWLLAVLSVINFCAFLYSAY  473 (499)
Q Consensus       445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~  473 (499)
                            ...|++.+++.++..+..+...+
T Consensus       173 ------~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        173 ------TVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhhcC
Confidence                  23566666666665554444333

>TIGR01272 gluP glucose/galactose transporter

Probab=95.19  E-value=0.17  Score=50.78  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      -|..+.+..+++.+.|-.+..++.+.++....|++.++..+++.....++|..+|+.+.+.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            457788899999999999999999999999999988999999999999999999999998654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.96  E-value=0.39  Score=51.02  Aligned_cols=58  Identities=14%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccc
Q 010840          372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV  429 (499)
Q Consensus       372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~  429 (499)
                      -.-++.|++--+++........+..-+.-+++++|++......+..+++.+.+.....
T Consensus       393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~  450 (488)
T KOG2325|consen  393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL  450 (488)
T ss_pred             ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence            3456777888888889999999999999999999999999999999999998876543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.93  E-value=0.15  Score=53.26  Aligned_cols=71  Identities=18%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  123 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~  123 (499)
                      +.+++...+.++|.|..-+...++.+|..+.++-+ .++.+..++..+.++.++|..+++.+.+++.+..||
T Consensus       312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45556667788899988899999999987753211 112356788999999999999999999998776666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=94.63  E-value=1.4  Score=46.25  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             HHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 010840          301 YSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIA  380 (499)
Q Consensus       301 ~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~ig  380 (499)
                      ..+.-++.+|.       ...+-+.+|.++.+++.+..++......              -.. ....+++..-++.|++
T Consensus        73 ~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~--------------~~~-~~~~~l~~~R~l~G~~  130 (434)
T PRK15075         73 AIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT--------------IGL-AAPLLVLLGRLLQGFS  130 (434)
T ss_pred             HHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH--------------HHH-HHHHHHHHHHHHhhcc
Confidence            34444555654       3334567777777777766665421100              000 0012345556789999


Q ss_pred             HHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          381 EVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       381 E~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +-...+....++.+..|++.|+..++++.....+|..+++.+...+
T Consensus       131 ~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             ccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888889999999999999999998887777776666665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.61  E-value=0.24  Score=51.10  Aligned_cols=83  Identities=12%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      .+.++..-.+-+++.|.+-+....++.++ ++++      +..+...|. .+..+|..+++.++|++.|++|+ ..|.+.
T Consensus       293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~  364 (382)
T TIGR00902       293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM  364 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence            35566667788888888888888888765 4322      344455544 35679999999999999999996 667676


Q ss_pred             HHHHHHHHHHHH
Q 010840          131 AIAMGISNMLFF  142 (499)
Q Consensus       131 ~~~m~l~~i~f~  142 (499)
                      ++..++++++..
T Consensus       365 ~~~~~~~~~~~~  376 (382)
T TIGR00902       365 AIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.53  E-value=0.34  Score=51.45  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      +..+...+...+..|++...-    +| +     .+..+=+.+|.+++++|.++...++..                  +
T Consensus        75 ~viaa~slg~~i~~liF~~Ws----~k-~-----~~~k~Pli~s~ii~~~g~llY~~l~~~------------------~  126 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWS----NK-T-----GSVKKPLIVSFLIAIIGNLLYLALAYV------------------P  126 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccc----cc-c-----CCcccCHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence            344456777778888776631    11 1     122233779999999999988766652                  2


Q ss_pred             cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhhHHHHhHH--HHHhHHHHHHHhhhhhhhccccCCCCCCCCCc
Q 010840          364 DLSAYWLLIQYCLIGIA-EVFCIVGLLEFLYEEAPDAMKSIGSAYA--ALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  440 (499)
Q Consensus       364 ~~s~~wli~~~~l~~ig-E~~~~p~~~ef~~~~aP~~mr~~~~gl~--~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w  440 (499)
                      +-+.|+++..+++.|+| -.+..--.+.-..+..++++|+++....  -+...+|..++..+..+-++        +-.|
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--------G~~i  198 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--------GFMI  198 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--------ceEE
Confidence            02578999999999999 6666666666666677888887766555  44455555555555444221        1224


Q ss_pred             cc-ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          441 LA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       441 ~~-~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      ++ ..+|.....  =|+.+++.+++.++..+..|--.
T Consensus       199 ~~~~~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  199 LPGLIFNMYTAP--AWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             cCcceEEecchH--HHHHHHHHHHHHHHHHhheeecc
Confidence            44 244443332  24456666666666555555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.47  E-value=1.1  Score=48.15  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch--
Q 010840          322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--  399 (499)
Q Consensus       322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~--  399 (499)
                      +-+.+|.++.+++.+..+..+                      .+..+......+..+|--+..+....++.++-|++  
T Consensus        77 r~iliG~il~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~  134 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP  134 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence            346788888877765443211                      11112222334455665566676678888888875  


Q ss_pred             hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          400 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       400 mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      .|+...++++....+|..+++.+...+...        -+|          ..-|...++.+++..+.++...|++.
T Consensus       135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--------~Gw----------~~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEE--------YSW----------AMGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             cccceehHHHHHHHHHHHHHHHHHHHHHhh--------hCh----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            788899999998999999999988765421        123          23455555555666666655444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=94.36  E-value=0.45  Score=51.29  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840          283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  362 (499)
Q Consensus       283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~  362 (499)
                      +++.+...+...+..++..++--.+.||           +-+.++.++..++.++.+..                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3666666666666666666554444443           33667777777777666654                     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhh
Q 010840          363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL  422 (499)
Q Consensus       363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l  422 (499)
                        .++++++..-++.|+|=-+.+....-++.+.||++.||.+.++..+...+|..++-.+
T Consensus       140 --~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~  197 (513)
T KOG0254|consen  140 --PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI  197 (513)
T ss_pred             --hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              3478889999999999999999999999999999999999999999999999988444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.23  E-value=0.86  Score=47.02  Aligned_cols=55  Identities=9%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      .+...++.+++.....|...+++.+..+++  +...|......++|..+++.+...+
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence            345567888888888888888877765543  3344555555566666666665543

>PRK09669 putative symporter YagG; Provisional

Probab=94.18  E-value=0.31  Score=51.39  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  123 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~  123 (499)
                      .+.+++...+.++|.|..-+...++.+|..|.++.+ .++.....|..+.++.++|..+|+.+++++-+..||
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            456677778899999999999999999998753322 112234578889999999999999999888666666

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=94.17  E-value=5.8  Score=42.24  Aligned_cols=92  Identities=14%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             HHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHH
Q 010840          303 TFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEV  382 (499)
Q Consensus       303 i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~  382 (499)
                      ..-++..|+       .+.+-+.++.++.++..+..++...            +     .. .|.+.++...++.|++ .
T Consensus        89 p~G~l~Dr~-------G~R~v~~~~~ll~~i~~~~~~~a~~------------~-----~~-~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         89 PYSFMVPIF-------GGRRWTVFSTAILIIPCVWLGIAVQ------------N-----PN-TPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             HHHHHHHHh-------CChHHHHHHHHHHHHHHHHHHHHHc------------c-----cC-CCHHHHHHHHHHHHHH-H
Confidence            334556664       3444567777777777666554310            0     01 4577788889999998 5


Q ss_pred             HHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHh
Q 010840          383 FCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS  420 (499)
Q Consensus       383 ~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~  420 (499)
                      ...+.+...+...-|++.||+++|++.....+|..++.
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            58888999999999999999999999544444444333

>PRK09848 glucuronide transporter; Provisional

Probab=93.98  E-value=0.31  Score=51.38  Aligned_cols=90  Identities=11%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhh-hhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch-------
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW-------  123 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~-~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~-------  123 (499)
                      .+.+++++.+.++|.|...+...++.+|..|+++-+. +++...++..+-++..+|..+|+.+.+.+-+..||       
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~  398 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQT  398 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC
Confidence            4556777888999999999999999998877543211 12235667788899999999999888876444444       


Q ss_pred             -------HHHH-HHHHHHHHHHHHHH
Q 010840          124 -------GSAF-GALAIAMGISNMLF  141 (499)
Q Consensus       124 -------~~~F-~i~~~~m~l~~i~f  141 (499)
                             +..+ .+|++.++++++++
T Consensus       399 ~~~~~~i~~~~~~~p~~~~~~~~~~~  424 (448)
T PRK09848        399 PEVIMGIRTSIALVPCGFMLLAFVII  424 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2222 45666666666654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.90  E-value=2.4  Score=43.31  Aligned_cols=117  Identities=16%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      +++-+-+..++++.+++.++=..                        -+.+-++..-++.+.|=....+..-+.+-+.-|
T Consensus        74 ~g~er~l~~~Llli~~G~~iR~~------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp  129 (395)
T COG2807          74 FGEERSLFLALLLIAAGILIRSL------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP  129 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence            46667777877776655433111                        124556677889999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      ++. +.+||+|..+.++|..+++.+...+...       ..+|        +....+|  +.++++.+++++-...|++
T Consensus       130 k~~-~~mtglYs~sl~~~aaLaa~lavpla~~-------~~gW--------~~aL~~W--Al~allAl~~WlPq~~r~~  190 (395)
T COG2807         130 KRV-GLMTGLYSTSLGAGAALAAALAVPLAQH-------SGGW--------RGALGFW--ALLALLALLIWLPQALREQ  190 (395)
T ss_pred             cch-hhHHhHHHHHHHHHHHHHhhhhhHHHHh-------hccH--------HHHHHHH--HHHHHHHHHHHhhhccccc
Confidence            987 4899999999999999998887554321       1246        2222333  5666666777766654443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.69  E-value=0.44  Score=49.07  Aligned_cols=124  Identities=13%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---
Q 010840          323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA---  399 (499)
Q Consensus       323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~---  399 (499)
                      -+.+|.++..+|.++..+....       ...      ... .+...+.....++++|.-+.-|....|..+|-+++   
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~-------~~~------~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP-------PSL------PSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS-------SSC-------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc-------chh------hhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            3678888888888886654320       000      011 34455667788999999999999999999999887   


Q ss_pred             hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          400 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       400 mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                      .|...-..|+....+|+.++..+...+..        +-+|          ...|++.++.++++.++|+...++|+++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~--------~~~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQ--------NYGW----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHH--------CS-H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcc--------ccch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            34455667788889999998877665542        1223          4578888888899999998888888876

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.54  E-value=7.6  Score=38.57  Aligned_cols=87  Identities=10%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHH
Q 010840          373 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY  452 (499)
Q Consensus       373 ~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~  452 (499)
                      ...++|++--+..-..--.+....||+.-|+.-|.-.....+|-.+.+.+..++.  ++     |+++       -.++-
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~--d~-----~g~y-------~~le~  423 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA--DG-----DGSY-------DNLEA  423 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee--cC-----CCch-------hhHHH
Confidence            4567777777777777778889999999999999888888888888777776643  21     2222       12566


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 010840          453 LYWLLAVLSVINFCAFLYSAY  473 (499)
Q Consensus       453 ~f~~la~l~~~~~~~~~~~~~  473 (499)
                      ||.....+++.+..+.+.+-|
T Consensus       424 ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  424 FFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             HHHHHHHHHHHHHHHHhheec
Confidence            777777777776665554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.36  E-value=1.2  Score=45.65  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +.|.++...++.+++.....|.......+..+  .|+..+|......++|..+|+.+...+.
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            35555566677888887777776666555433  3455555555555667777776666543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.25  E-value=3.9  Score=42.33  Aligned_cols=88  Identities=11%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      .+..+-+..|+.+.+++.....=....                    -++-..+...++++.|=.+.-.++..++....|
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa~~--------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~  134 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAASS--------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGK  134 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhh--------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence            455566888999888887665422110                    234445667789999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSI  425 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~  425 (499)
                      ++-.+.=+++-....++|..+++.+++.
T Consensus       135 ~~~a~~rlnl~q~fn~lGa~~gp~~g~~  162 (422)
T COG0738         135 PESAAFRLNLAQAFNGLGAILGPLLGSS  162 (422)
T ss_pred             chhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9777766666666666666666666544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=93.18  E-value=5e-05  Score=80.10  Aligned_cols=81  Identities=16%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh---ccchHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  127 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~---~~g~~~~F  127 (499)
                      +...+.++-.+.++|.|+.-+....++.+..+++.      |.....++..+.++|.+++..+...+.+   +.+|+..+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            45677778889999999999999998887775432      5667777778888998888766544432   34599888


Q ss_pred             HHHHHHHHHH
Q 010840          128 GALAIAMGIS  137 (499)
Q Consensus       128 ~i~~~~m~l~  137 (499)
                      .++.+..++.
T Consensus       175 ~~~~~~~l~~  184 (451)
T PF00083_consen  175 IFGAIPSLLV  184 (451)
T ss_pred             cccccccccc
Confidence            7766655443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=92.91  E-value=4.6  Score=41.47  Aligned_cols=86  Identities=13%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  446 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln  446 (499)
                      .+|++....+.++......+....+..++.+++.++.+.+.......+|..+|+.+...+...        -+|      
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~--------~gw------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK--------FGQ------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCH------
Confidence            455555556666777777777777888888888889888888888888999988665443211        124      


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Q 010840          447 TGRFDYLYWLLAVLSVINFCAFLY  470 (499)
Q Consensus       447 ~~~l~~~f~~la~l~~~~~~~~~~  470 (499)
                          ..-|++.+++.++..+..+.
T Consensus       163 ----~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       163 ----RPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHH
Confidence                23566677777665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=92.80  E-value=2.3  Score=45.43  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840          366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                      +...++..-++.|+..-+......=|+.+.||++.||.+..+.-+...+|..++..++.
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l  173 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL  173 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence            35556778899999999999999999999999999999999999999999999877753

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.73  E-value=3.6  Score=36.98  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .+.+.++|.-++.|+|+.+.....-.++.+.+.++.|+...|+++.....+...|+.+.-.+.
T Consensus        87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778899999999999999999999999999999999999999998888888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.51  E-value=1.2  Score=47.73  Aligned_cols=85  Identities=16%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~  130 (499)
                      .+.+++.-.++++..|...+...++.++..++++      ...+|..|-..--..+.+||++.+.+.+..| .+.+|+..
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l  453 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFL  453 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3456666678999999999999999999998754      3679999999999999999999999988776 88999878


Q ss_pred             HHHHHHHHHHHH
Q 010840          131 AIAMGISNMLFF  142 (499)
Q Consensus       131 ~~~m~l~~i~f~  142 (499)
                      .+.++++++++.
T Consensus       454 ~~lf~~gl~ll~  465 (477)
T PF11700_consen  454 LVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHh
Confidence            888888877664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=92.31  E-value=0.84  Score=47.82  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840            4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE   83 (499)
Q Consensus         4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~   83 (499)
                      +..+.+++.++.+++.+...                          .+.+.+++...+.++|.|...+...++.+|..|.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~  346 (428)
T PF13347_consen  293 YIIGLLLAALGFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDY  346 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence            45566777777776655421                          2456788889999999999999999999999986


Q ss_pred             CChhh-hhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840           84 RSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  123 (499)
Q Consensus        84 ~~~~~-~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~  123 (499)
                      ++-+. ++.....+..+-+...+|..++..+.+.+-+..||
T Consensus       347 ~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  347 DEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            43221 12245678888889999999999988877544444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=90.91  E-value=6.4  Score=38.28  Aligned_cols=122  Identities=12%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      .|..-..+|.++..+|+......-..                ..++.+.|.+.....+.+.|..+..-..+--..+.=|+
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~----------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSG----------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC----------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            34444667777777777666544221                11113344444445566677777666666666677786


Q ss_pred             hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                       .||...|+--...|++..+=..+...+.              ++|     .+.|..+++....+..++....-|...
T Consensus       128 -~RG~vvgilk~~~GLSaai~t~i~~~~f--------------~~~-----~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  128 -SRGTVVGILKGFFGLSAAIFTQIYSAFF--------------GDD-----PSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             -ccCceehhhhHHHHhHHHHHHHHHHHHc--------------CCC-----hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence             6999999999888888887555443322              111     234667777776666555555555544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.42  E-value=2.6  Score=44.62  Aligned_cols=125  Identities=12%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      ++...|+..++++..+-+++.......           +.   +.. ...+..+..-++.|++..+...+.+.++...-|
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-----------~~---~~~-~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~  136 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVKV-----------QT---SET-GFFVTTMASVVIINSGMALLQGSLFGLAGVFPS  136 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheeee-----------cC---Ccc-hHHHHHHHHHHHHHhhhhhhcccchhhcccCCH
Confidence            577788999877655555554432110           00   011 234445566778899999999999999886666


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  472 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~  472 (499)
                      +.+++.+.     .+|++..+++++.-+.....+     |..    +...+- ..||.+-+++.+++.+.|..+.
T Consensus       137 ~~~~a~~~-----G~g~aGv~~s~~~ii~~a~~~-----~~~----~~~~~a-~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       137 TYSSAVMS-----GQGLAGVLTSLAMILVKASGN-----DSH----GLKKSA-LGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             HHHHHHHh-----cchhHHHHHHHHHHHHHHhcC-----Ccc----chhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            55554444     466776666655433221111     100    122222 2356666666777777776554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=90.35  E-value=3.2  Score=44.62  Aligned_cols=86  Identities=13%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  444 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~  444 (499)
                      -|+++++..-++.|++..-....+...+.+..+++.|+..+.+ ....-.+..++..+...+.          ++|    
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~----------~~W----  233 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT----------RDW----  233 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH----------hhH----
Confidence            4577788888999999999999999999999999999999999 4445455555555544432          246    


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          445 INTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       445 ln~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                            .+++|..++.+++..+++++.
T Consensus       234 ------r~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  234 ------RWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHcc
Confidence                  356777777777666654433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.69  E-value=4.1  Score=42.43  Aligned_cols=82  Identities=12%  Similarity=0.042  Sum_probs=56.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      .+-..|+.+..+++++||++.++.+                       ++++-+..-++.+++--+.-.+-+.+.... |
T Consensus        86 v~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y-~  141 (402)
T PF02487_consen   86 VPYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFY-G  141 (402)
T ss_pred             ccchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhc-C
Confidence            5677899999999999998876542                       234445555666666656556666665433 3


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          398 DAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      +    ...+.|...+|.|..+|+.......
T Consensus       142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen  142 K----SSLSAWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             c----cccccccCCcChhhHHHHHHHHHHH
Confidence            2    3468888889999999888766543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=89.01  E-value=13  Score=38.35  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHH-HHHHhhhhhhhccccCCCCCCC-CC------
Q 010840          368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG-CFAASILNSIIKSVTGNPKKGQ-PN------  439 (499)
Q Consensus       368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g-~~l~~~l~~~v~~~t~~~~~~~-~~------  439 (499)
                      ...+.+|.+.+..---.++++++|..+.||+...|++|.+-.--..+| +.-+.+...+++..|.++=... +.      
T Consensus       370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~t~~~~c~~~  449 (510)
T KOG3574|consen  370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLATNKVTCITK  449 (510)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeeccccccceeeecc
Confidence            344568999999999999999999999999999999998866555544 3444444444444332100000 00      


Q ss_pred             cccc---cCccc---hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          440 WLAQ---NINTG---RFDYLYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       440 w~~~---~ln~~---~l~~~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                      -.++   ++...   ..|-||..-.+..++..+.|.++.+|.++.
T Consensus       450 ~~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~L  494 (510)
T KOG3574|consen  450 AFPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYL  494 (510)
T ss_pred             hHHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHH
Confidence            0000   01100   024477665566666677777777777765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=88.88  E-value=2.7  Score=44.76  Aligned_cols=72  Identities=14%  Similarity=0.015  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  123 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~  123 (499)
                      .+.+++...+.++|.|..-+...++.+|..|.++-+ .++....+|..+-++..+|..+|+.+.+++-+..||
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            345666777788999998899999999998754211 111234478889899999999999999887655555

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.08  E-value=8.9  Score=40.44  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCchh
Q 010840          324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE---APDAM  400 (499)
Q Consensus       324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~---aP~~m  400 (499)
                      +.+|.++.+++.+..+.....                  . .+........++.++|.++..+..-+...+.   -|++ 
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~------------------~-~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-  121 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS------------------E-SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-  121 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc------------------c-chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence            667777766655555543210                  0 1222333344556666666655555444443   4666 


Q ss_pred             hHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          401 KSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       401 r~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                      +|-.++..+....+|+.++..+++..
T Consensus       122 ~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen  122 RGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88899988888999999988877553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=87.79  E-value=4.1  Score=42.52  Aligned_cols=83  Identities=11%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHhhccc------hHHHHH
Q 010840           56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYIQMEHG------WGSAFG  128 (499)
Q Consensus        56 ~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~i-NiG~~i~~~~~~~i~~~~g------~~~~F~  128 (499)
                      .++..+=++..|.+-.....++.++.+++.      |.+.=.+|.... -+|..+|..++|++.|++|      |...|.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~  378 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL  378 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            334445677777787888888887776543      344555555443 4899999999999988765      445566


Q ss_pred             HHHHHHHHHHHHHHhc
Q 010840          129 ALAIAMGISNMLFFIG  144 (499)
Q Consensus       129 i~~~~m~l~~i~f~~g  144 (499)
                      ++++..++..+.|.+.
T Consensus       379 v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  379 VFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6776666666666554

>PRK11462 putative transporter; Provisional

Probab=87.77  E-value=20  Score=38.01  Aligned_cols=58  Identities=9%  Similarity=0.049  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS  424 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-~~mr~~~~gl~~l~~a~g~~l~~~l~~  424 (499)
                      ..|....|++..++-.+....-.++....++ ++.|+..++.......+|..+++.+..
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999999999 699999999999888888877766643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.78  E-value=48  Score=35.45  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhH-HHHHHHhhhhhh
Q 010840          372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG-LGCFAASILNSI  425 (499)
Q Consensus       372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a-~g~~l~~~l~~~  425 (499)
                      .|.++.-.++--..-..-|..|..-+++.|..+-+..=...+ +|-.+|+.+.+.
T Consensus       381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~  435 (472)
T TIGR00769       381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG  435 (472)
T ss_pred             HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence            477888888888888999999999999999988877665443 666666665443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.78  E-value=2.8  Score=41.53  Aligned_cols=77  Identities=16%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHH
Q 010840           57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIA  133 (499)
Q Consensus        57 ~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g---~~~~F~i~~~~  133 (499)
                      +++.++++.......+.-|+++-..+|++      ...+|..-|-..|+|-.+.+++++.+.++-|   |--.|.+....
T Consensus       357 ~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  357 TSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            35556666655555557777777776543      6788999999999999999999999977643   54556555555


Q ss_pred             HHHHHH
Q 010840          134 MGISNM  139 (499)
Q Consensus       134 m~l~~i  139 (499)
                      |.+..+
T Consensus       431 ~aL~sv  436 (459)
T KOG4686|consen  431 MALTSV  436 (459)
T ss_pred             HHHHHH
Confidence            554444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=83.45  E-value=6.7  Score=40.45  Aligned_cols=81  Identities=15%  Similarity=0.121  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 010840          324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI  403 (499)
Q Consensus       324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~  403 (499)
                      +.+|.+..+++.+..+...                       +...++..=++.|+..--+++. -+.+.+.++++.|+.
T Consensus       101 ll~c~~~va~s~ll~~~S~-----------------------~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l  156 (451)
T KOG2615|consen  101 LLACLIGVALSYLLWALSR-----------------------NFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPL  156 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccc
Confidence            5567777677666555432                       2223344445555555544443 467889999999999


Q ss_pred             HHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840          404 GSAYAALAGGLGCFAASILNSIIKS  428 (499)
Q Consensus       404 ~~gl~~l~~a~g~~l~~~l~~~v~~  428 (499)
                      .|+....+.++|..+|++++.....
T Consensus       157 ~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  157 GMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999876543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=82.92  E-value=0.32  Score=52.84  Aligned_cols=92  Identities=16%  Similarity=0.248  Sum_probs=2.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------  119 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~-----------  119 (499)
                      -..+|++|-++.++|..-+-+    ++..-.||.-+++  +-.-+..++|.+-.+|..+|.++++..-+           
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~t----LG~tYiDDnv~~~--~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYT----LGITYIDDNVSKK--NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCcc----ceeeeeccccccc--cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            356777888888887665544    4444444433221  13567788888888998888887765421           


Q ss_pred             ----------ccc-hHHHHHHHHHHHHHHHHHHHhccccc
Q 010840          120 ----------EHG-WGSAFGALAIAMGISNMLFFIGTPLY  148 (499)
Q Consensus       120 ----------~~g-~~~~F~i~~~~m~l~~i~f~~g~~~~  148 (499)
                                .+| ||+||+++++..++..+-++..-|++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence                      134 99999999888887777555443333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=82.32  E-value=1.8  Score=46.73  Aligned_cols=87  Identities=17%  Similarity=0.215  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA  131 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~~  131 (499)
                      +.+..--.++++..|.+-......+.|..+.++      ..++|.+......+++++|+-+++++.|..| |...|..++
T Consensus       389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g  462 (509)
T KOG2504|consen  389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG  462 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence            455555566777777777766667777777543      6789999999999999999999999988887 999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 010840          132 IAMGISNMLFFIGT  145 (499)
Q Consensus       132 ~~m~l~~i~f~~g~  145 (499)
                      +.++++....+.-+
T Consensus       463 ~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  463 LCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHHHHhH
Confidence            99999987665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=81.30  E-value=24  Score=36.81  Aligned_cols=156  Identities=14%  Similarity=0.118  Sum_probs=86.4

Q ss_pred             CeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcc
Q 010840          277 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF  356 (499)
Q Consensus       277 g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~  356 (499)
                      ++...++....+..+.++.-..+ .-.+-++..|+       .+.+-..+++++..+-.+..++...             
T Consensus        43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~-------------  101 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT-------------  101 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            35666766666666666555432 33334455553       3445566677777777777766532             


Q ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCC
Q 010840          357 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG  436 (499)
Q Consensus       357 ~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~  436 (499)
                           .  .|.|+++..=++.|++-. .+..++..+..-=|++.||.++|++- ...+|..+...+..++-..-.     
T Consensus       102 -----~--~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-----  167 (417)
T COG2223         102 -----Y--PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-----  167 (417)
T ss_pred             -----C--CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-----
Confidence                 1  233444444445555432 34456667777889999999999998 555665555554444332110     


Q ss_pred             CCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840          437 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  477 (499)
Q Consensus       437 ~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~  477 (499)
                      ...|          ..--++.....++..+++++..+....
T Consensus       168 ~~~w----------~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         168 FLAW----------RNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             hHHH----------HHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            0013          112233445666666667666665533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	499
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 56  YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 115
           YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMP 169
Query: 116 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 153
            +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
2xut_A	524	Proton/peptide symporter family protein; transport	2e-88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  279 bits (716), Expect = 2e-88
 Identities = 89/444 (20%), Positives = 165/444 (37%), Gaps = 38/444 (8%)

Query: 51  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 110
            +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY ++  G+  A
Sbjct: 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYFTINFGSFFA 164

Query: 111 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 170
              +  +    G   AFG   + M ++ + F++G   Y H  P          V+ +A  
Sbjct: 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224

Query: 171 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPS 224
            +     +  L  +  + G  SA      I        L  A       +     +    
Sbjct: 225 TKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 225 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 284
             K      V+ V++++R++ + A       +  +  +  + QA  M   +         
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAM 339

Query: 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 344
           M     L + L++        P   R+       + L+++G G+A++ LS I  G  +  
Sbjct: 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLM 396

Query: 345 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 404
               +               LS +W ++ Y L+   EV      LEF Y +AP AMK   
Sbjct: 397 MDGGSA--------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 405 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 464
            ++  L+  +G     + N  +KS T          +   ++   F   ++  A  +++ 
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFAILA 495

Query: 465 FCAFLYSAYRYKYRSEQKHGNDYE 488
              F   A  Y+ +   +     E
Sbjct: 496 AIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 47  AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 106
           A  +    L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +G
Sbjct: 103 ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLG 158

Query: 107 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 150
           A +A  +V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 74/524 (14%), Positives = 137/524 (26%), Gaps = 198/524 (37%)

Query: 25  KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGAD 79
           K  +       ++ Q L    PAK         ++  + G G    A             
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL------------ 168

Query: 80  QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 139
              +    YK      F  F+L++                     +      + + +   
Sbjct: 169 ---DVCLSYKVQCKMDFKIFWLNL--------------------KNCNSPETV-LEMLQK 204

Query: 140 LFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGS 197
           L +   P +  R    S +      + A  R+  +   + +  L+               
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------------- 249

Query: 198 GKIAHTDDFRCLDKAALELKEDVINPSPWKL----CTVTQVEEVKTLV--RLVPIPACTI 251
                      L         +V N   W      C        K L+  R         
Sbjct: 250 -----------LL--------NVQNAKAWNAFNLSC--------KILLTTR--------- 273

Query: 252 MLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFL-ILSLYYSTFVPLCRR 310
                +T+FL+ +     +++ H   L             S+ L  L         L R 
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQD---LPRE 321

Query: 311 I-TGHPRGASQLQRVGIGLAVSILSVIWAGI------FERYRR------NYAISHGYE-- 355
           + T +P              +SI   I   I      ++ ++          I       
Sbjct: 322 VLTTNP------------RRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 356 --------FSFLTAMPD--------LSAYWL-LIQYCLIGIAEVFCIVGLLEFLYEEAPD 398
                   F  L+  P         LS  W  +I+  ++ +        L+E   ++  +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKE 423

Query: 399 AMKSIGSAYAALAGGLGCFAASILN------SIIKSVTGNPKKGQPNWLAQNINTGRFD- 451
           +  SI S Y  L          + N      SI+     N  K   +    ++     D 
Sbjct: 424 STISIPSIYLEL-------KVKLENEYALHRSIVDHY--NIPKTFDSD---DLIPPYLDQ 471

Query: 452 YLYWLLAV-LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 494
           Y Y  +   L  I       + +R  +        D+  +E K+
Sbjct: 472 YFYSHIGHHLKNIEH-PERMTLFRMVFL-------DFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
2xut_A	524	Proton/peptide symporter family protein; transport	99.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.4
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.89
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.28
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.13
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.11
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.03
2xut_A	524	Proton/peptide symporter family protein; transport	97.55
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.55
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.24
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.85

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.91  E-value=8e-25  Score=232.95  Aligned_cols=418  Identities=20%  Similarity=0.330  Sum_probs=249.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..+|.+++.++.                           .+.+.++++..+.++|.|+..|+..++++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  139 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD  139 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence            45566677777776665531                           034567888899999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA  162 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~  162 (499)
                      +++   +....+.|++++.+.|+|..+++.+++++.+..||++.|.+.++..+++++.++..++++.+++|++++.....
T Consensus       140 ~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (524)
T 2xut_A          140 QSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL  216 (524)
T ss_dssp             TTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred             ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence            644   22246789999999999999999999999888999999999998888888777666655544444444333333


Q ss_pred             HHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccc--cccCCCCCc-------cccccch
Q 010840          163 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK--EDVINPSPW-------KLCTVTQ  233 (499)
Q Consensus       163 ~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~--~~~~~~~~~-------~~~~~~~  233 (499)
                      +.+..+.++++.+.+. ... .......   ........+.+....+..+.....  .+.....+|       +.++.++
T Consensus       217 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (524)
T 2xut_A          217 PVIRSALLTKVEGKGN-IGL-VLALIGG---VSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAA  291 (524)
T ss_dssp             ----------CTTHHH-HHH-HHHHHHH---HHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSS
T ss_pred             HHHHHHHhhhhcccCc-cch-hhhhhhh---hhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhH
Confidence            3333333322110000 000 0000000   000000000000000000000000  000000122       1123334


Q ss_pred             hhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcC
Q 010840          234 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG  313 (499)
Q Consensus       234 ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~  313 (499)
                      +++.|+.+..+++++...+++..+.|..+.+..|+..++.+.  + ++.+.+..++++..++..|+.+++..|..+|+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (524)
T 2xut_A          292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV  368 (524)
T ss_dssp             STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence            567777778888888888888888888888877776665432  2 3566778888889999999999887777776533


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840          314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY  393 (499)
Q Consensus       314 ~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~  393 (499)
                      +   +++.+++.+|+++.+++++..+..+..+          +   ...+ .+.+|+++.+++.++++.+..|...+++.
T Consensus       369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          369 K---LTALRKMGAGIAITGLSWIVVGTIQLMM----------D---GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             -----CCHHHHHTHHHHHHHHHHTTTTTTTTT----------T---TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             C---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------c---CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   5677889999999888887766543210          0   0112 56788999999999999999999999999


Q ss_pred             hhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc-cCccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840          394 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSA  472 (499)
Q Consensus       394 ~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~-~ln~~~l~~~f~~la~l~~~~~~~~~~~~  472 (499)
                      +.+|+++||.++|++....++|+.+|+.+...+...+      +.+|.++ +++.+  .+.|++.+++++++.++++++.
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT------VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH------HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc------ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987754211      1235432 22221  2237888889999998888888


Q ss_pred             ccccccccccc
Q 010840          473 YRYKYRSEQKH  483 (499)
Q Consensus       473 ~~y~~~~~~~~  483 (499)
                      +++++++++++
T Consensus       504 ~~~~~~~~~~~  514 (524)
T 2xut_A          504 RSYQMQDHYRQ  514 (524)
T ss_dssp             -----------
T ss_pred             HHhccchhhhh
Confidence            88876654433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=1.4e-19  Score=190.53  Aligned_cols=351  Identities=18%  Similarity=0.193  Sum_probs=229.2

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      +.++++..+.++|.|...|+..++++|.+++++.    .|...+++++.+.|+|..+++.+++++.++.||++.|.++++
T Consensus       109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~  184 (491)
T 4aps_A          109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI  184 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4677888899999999999999999999986542    257799999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhcccccccc---CCCC-ChHHHHHHHHHH--------------HHhhccccccccccccccccCCCCccc
Q 010840          133 AMGISNMLFFIGTPLYRHR---LPGG-SPLTRVAQVLVA--------------AFRKRHAAFSSSELIGLYEVPGKHSAI  194 (499)
Q Consensus       133 ~m~l~~i~f~~g~~~~~~~---~p~g-~pl~~~~~vl~~--------------a~~~~~~~~~~~~~~~l~~~~~~~~~~  194 (499)
                      ..+++++.++..++++..+   +|+. ....+..+....              .......+. .+..             
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~-------------  250 (491)
T 4aps_A          185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYI-------------  250 (491)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT-THHH-------------
T ss_pred             HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccch-------------
Confidence            8888877666554443322   1111 111111110000              000000000 0000             


Q ss_pred             CCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhh-hcc
Q 010840          195 KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNT  273 (499)
Q Consensus       195 ~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~-m~~  273 (499)
                          ..  .   .............    ..|+... ...+++|+..+.+++++...+++..+.+..+.+..+..+ .+.
T Consensus       251 ----~~--~---~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (491)
T 4aps_A          251 ----NL--L---TIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS  316 (491)
T ss_dssp             ----HH--H---HHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC
T ss_pred             ----hh--h---hHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence                00  0   0000000000000    0000000 112456677778888888999999999988887666543 333


Q ss_pred             cccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 010840          274 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG  353 (499)
Q Consensus       274 ~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g  353 (499)
                      +    ..+...+..++.+..++..++..++..++.||.      +...+++.+|+++.+++++..+......       +
T Consensus       317 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  379 (491)
T 4aps_A          317 S----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G  379 (491)
T ss_dssp             S----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C
T ss_pred             C----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence            2    146778899999999999999888655544431      5667889999999999998887765321       0


Q ss_pred             CcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCC
Q 010840          354 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP  433 (499)
Q Consensus       354 ~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~  433 (499)
                            .+.+ .+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+...+...    
T Consensus       380 ------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----  448 (491)
T 4aps_A          380 ------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----  448 (491)
T ss_dssp             ------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----
T ss_pred             ------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence                  0112 56889999999999999999999999999999999999999999999999999999887654421    


Q ss_pred             CCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840          434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  478 (499)
Q Consensus       434 ~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~  478 (499)
                                     .....|+.+++++++..++++++.++.+++
T Consensus       449 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          449 ---------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             ---------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           123467778888888888777777766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.40  E-value=1.6e-11  Score=126.97  Aligned_cols=337  Identities=11%  Similarity=0.034  Sum_probs=185.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..+|.+++.+...   ..                     .+.+.++++..+.++|.|...|...+++.|.++
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~---~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~  149 (451)
T 1pw4_A           94 FLPAGLILAAAVMLFMGFVPW---AT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS  149 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHH---HH---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHhhhh---cc---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC
Confidence            456677777777777765210   00                     122467778889999999999999999999997


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV  161 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~  161 (499)
                      +++      |.+.+.++..+.++|.++++.+++++.+..| |++.|.+.++..++..+..+...+.    +|+...    
T Consensus       150 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~----  215 (451)
T 1pw4_A          150 QKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD----TPQSCG----  215 (451)
T ss_dssp             TTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC----SSTTTC----
T ss_pred             chh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccC----CHhhcC----
Confidence            532      6889999999999999999999999878888 9999998887766555443332211    111000    


Q ss_pred             HHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhh
Q 010840          162 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV  241 (499)
Q Consensus       162 ~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l  241 (499)
                                 .  .+.+..    +.+      .. ..  ..      ++..    .    ...+   +.....+..+-.
T Consensus       216 -----------~--~~~~~~----~~~------~~-~~--~~------~~~~----~----~~~~---~~~~~~~~~~~~  252 (451)
T 1pw4_A          216 -----------L--PPIEEY----KND------YP-DD--YN------EKAE----Q----ELTA---KQIFMQYVLPNK  252 (451)
T ss_dssp             -----------C--CSCTTT----CCC------------------------------------CC---THHHHHHTSSCH
T ss_pred             -----------C--CChhhh----ccc------cc-cc--ch------hhhh----c----cccc---ccchHHHHHcCH
Confidence                       0  000000    000      00 00  00      0000    0    0000   000001110001


Q ss_pred             hhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 010840          242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA  318 (499)
Q Consensus       242 ~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~  318 (499)
                      ++..+.+...+.+..+....+.+..+   +....   +.++.   .+.....+..++..++..++    .+|..+     
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----  317 (451)
T 1pw4_A          253 LLWYIAIANVFVYLLRYGILDWSPTY---LKEVK---HFALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----  317 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---BTTBS---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----
Confidence            12222233333333332222222222   22211   12222   33344444444444444333    333210     


Q ss_pred             CchhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840          319 SQLQRVGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  397 (499)
Q Consensus       319 s~l~ri~iG~~l~~-l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP  397 (499)
                      +..+.+.++.++.+ ++++.....                     ++.+.++.+...++.+++-....+....++.+..|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (451)
T 1pw4_A          318 GNRGATGVFFMTLVTIATIVYWMN---------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP  376 (451)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTTSC---------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHh---------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence            22233444444433 343332211                     10246666777788888888888888999999999


Q ss_pred             chhhHHHHhHHHHHhHH-HHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840          398 DAMKSIGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  474 (499)
Q Consensus       398 ~~mr~~~~gl~~l~~a~-g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~  474 (499)
                      ++.||.++|++.....+ |..+++.+...+....        +          ....|+..++++++..++++...++
T Consensus       377 ~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--------g----------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          377 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--------G----------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--------C----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999 9999998877654211        1          2346677777777777766655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.11  E-value=1.9e-08  Score=103.24  Aligned_cols=109  Identities=13%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840            3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD   82 (499)
Q Consensus         3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~   82 (499)
                      ++.++.++..+|.++..+.+..                         .+.+.++++..+.++|.|...+...+++.|.++
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  147 (438)
T 3o7q_A           93 GIITGLFLYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP  147 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence            4667778888888777544331                         135678889999999999999999999999998


Q ss_pred             CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHH
Q 010840           83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGI  136 (499)
Q Consensus        83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-~~~g-------------------------~~~~F~i~~~~m~l  136 (499)
                      +++      |...++++..+.++|.++++.+++++. +..+                         |++.|.+.++..++
T Consensus       148 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  221 (438)
T 3o7q_A          148 ESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL  221 (438)
T ss_dssp             STT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            643      567899999999999999999999987 5544                         89999776665555


Q ss_pred             HHHHHH
Q 010840          137 SNMLFF  142 (499)
Q Consensus       137 ~~i~f~  142 (499)
                      ..+.++
T Consensus       222 ~~~~~~  227 (438)
T 3o7q_A          222 VALLIM  227 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.89  E-value=2.7e-09  Score=107.69  Aligned_cols=83  Identities=11%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      +.+.++++..+.++|.|...|...++..|.+++++      |.+.+.++..+.++|..+++.+++++.++.||+..|.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            34567778888999999999999999999987543      678899999999999999999999998888999999887


Q ss_pred             HHHHHHHHH
Q 010840          131 AIAMGISNM  139 (499)
Q Consensus       131 ~~~m~l~~i  139 (499)
                      ++..++..+
T Consensus       161 ~~~~~~~~~  169 (375)
T 2gfp_A          161 LVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            776665544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.81  E-value=2.1e-07  Score=97.23  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc--------c
Q 010840           50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H  121 (499)
Q Consensus        50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~--------~  121 (499)
                      .+.+.++++=.+.++|.|+.-+....+++|..+++.      |.....++..++++|.+++..+...+...        .
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD  197 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence            356788899999999999999999999999887422      67788888899999999888877665432        3


Q ss_pred             chHHHHHHHHHHHHH
Q 010840          122 GWGSAFGALAIAMGI  136 (499)
Q Consensus       122 g~~~~F~i~~~~m~l  136 (499)
                      +|++.+.+..+..++
T Consensus       198 ~~~~~~~~~~~~~~~  212 (491)
T 4gc0_A          198 GWRYMFASECIPALL  212 (491)
T ss_dssp             HHHHHHHTTHHHHHH
T ss_pred             hhHHHhhhhhhhhhh
Confidence            466666554444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.28  E-value=2.5e-06  Score=87.54  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhH-HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC
Q 010840          367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  445 (499)
Q Consensus       367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl-~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l  445 (499)
                      .++++...++.+++.....+....+..+..|++.||..+|+ +....++|..+++.+...+..               ..
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---------------~~  376 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---------------SI  376 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---------------HS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---------------hc
Confidence            45555556667777666677778899999999999999998 477777888888887764331               00


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840          446 NTGRFDYLYWLLAVLSVINFCAFLYS  471 (499)
Q Consensus       446 n~~~l~~~f~~la~l~~~~~~~~~~~  471 (499)
                         .....|.+.++++++..++.+..
T Consensus       377 ---g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          377 ---GFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHhh
Confidence               12335666777777766655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.13  E-value=5.7e-05  Score=77.09  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=85.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+..++..|+..++    .+|       ....+-+.+|.++.+++.+..+....                   .
T Consensus        65 ~~~~~~~~~~~i~~~~~G~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------~  114 (438)
T 3o7q_A           65 LIQSAFYFGYFIIPIPAGIL----MKK-------LSYKAGIITGLFLYALGAALFWPAAE-------------------I  114 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHH----HHH-------SCHHHHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHH-------hcchHHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence            34455555555666665554    344       23334477888888888777643321                   0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                       .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus       115 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          115 -MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             -ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             457778888999999999999999999999999999999999999999999999999887654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.11  E-value=4.3e-05  Score=79.54  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=97.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhh-hcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRR-ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  362 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r-~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~  362 (499)
                      ++.+...+...+..|+..++.    +| +       ...+-+.+|.++.+++.+..++.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~----dr~~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------  105 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVA----DRII-------GARPAVFWGGVLIMLGHIVLALP---------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHTS-------CHHHHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hccc-------cchHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            445555566666666655543    33 2       12233667777777766655431                     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh--hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCc
Q 010840          363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  440 (499)
Q Consensus       363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m--r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w  440 (499)
                        .+.++++...++.|+++....|....++.+..|++.  |+..++++....++|..+++.+...+...        .+|
T Consensus       106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~  175 (491)
T 4aps_A          106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--------AGY  175 (491)
T ss_dssp             --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCH
T ss_pred             --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--------hhH
Confidence              335667778899999999999999999999999988  88888888899999999999888765421        124


Q ss_pred             ccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840          441 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  477 (499)
Q Consensus       441 ~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~  477 (499)
                                ...|+..+++.++..++++...+++..
T Consensus       176 ----------~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          176 ----------HVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence                      335555666666666666666665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.03  E-value=4.9e-05  Score=77.81  Aligned_cols=113  Identities=10%  Similarity=-0.078  Sum_probs=83.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..++    .+|+       ...+-+.+|.++.+++.+..++....    +              
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~----~--------------  116 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA----T--------------  116 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH----H--------------
T ss_pred             HHHHHHHHHHHHHHHhHHHH----HHhc-------CchHHHHHHHHHHHHHHHHHHhhhhc----c--------------
Confidence            34444445555555555443    4442       33344778888888888777662210    0              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus       117 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          117 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34567777899999999999999999999999999999999999999999999998887653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.55  E-value=0.001  Score=69.75  Aligned_cols=117  Identities=15%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ...+-+.+|.++.+++.+..++..                      .+.++++...++.|+++....|....++.+..|+
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  140 (524)
T 2xut_A           83 GKYNTILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ  140 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence            334446677777777766655420                      1467777888999999999999999999999999


Q ss_pred             hhhHHHHhH---HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840          399 AMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  475 (499)
Q Consensus       399 ~mr~~~~gl---~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y  475 (499)
                      +.|+..+++   +....++|..+++.+...+...        -+|          ...|++.+++.++..++++...+++
T Consensus       141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~----------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--------FGA----------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--------SCH----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccH----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999877666   8888889998888887654321        123          3356666666666555554443433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.55  E-value=0.00027  Score=70.67  Aligned_cols=109  Identities=10%  Similarity=0.026  Sum_probs=81.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+..+    +.+|.+++       +-+.+|.++.+++.+..+..                      
T Consensus        39 ~~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   85 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGP----ISDRVGRR-------PVILVGMSIFMLATLVAVTT----------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHH----HHTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence            3444445555555555444    34453322       22557777777777766654                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus        86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  147 (375)
T 2gfp_A           86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL  147 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             33667777889999999999999999999999999999999999999999999999887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.24  E-value=0.057  Score=55.50  Aligned_cols=63  Identities=16%  Similarity=0.067  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840          365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  427 (499)
Q Consensus       365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~  427 (499)
                      .+++.++..-++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            457778888999999999999999999999999999999999999999999998887766544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.85  E-value=0.0064  Score=61.85  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840           54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  132 (499)
Q Consensus        54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~  132 (499)
                      .+.+...+.+++.+.+-+...++..|.+++   +   .|...+.+ +..+.++|+.+++.+++++.++.|+...|.+.++
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~---~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~  387 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV---R---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL  387 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH---H---HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---H---HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence            334444455556555556667788888763   2   24666777 4566779999999999999888899999988888


Q ss_pred             HHHHHHHHHHh
Q 010840          133 AMGISNMLFFI  143 (499)
Q Consensus       133 ~m~l~~i~f~~  143 (499)
                      ..+++.++.+.
T Consensus       388 ~~l~~~~~~~~  398 (417)
T 2cfq_A          388 VALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            77777765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.27
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.98
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.22
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.1

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.4e-10  Score=116.63  Aligned_cols=85  Identities=12%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~  130 (499)
                      ...++++..+.++|.|..-+...++++|.+++++      |...+.++..+.++|..+++.+.+++.+. .+|+..|.+.
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~  189 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP  189 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhh
Confidence            3467778888999999999999999999987532      67889999999999999999888876544 4788888877


Q ss_pred             HHHHHHHHHHHH
Q 010840          131 AIAMGISNMLFF  142 (499)
Q Consensus       131 ~~~m~l~~i~f~  142 (499)
                      ++..++..++.+
T Consensus       190 ~~~~~~~~~~~~  201 (447)
T d1pw4a_         190 AFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH
Confidence            766655544333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.6e-08  Score=98.78  Aligned_cols=117  Identities=12%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840          319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  398 (499)
Q Consensus       319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~  398 (499)
                      ...+-+.++.++.+++++.....                       .+.++.+...++.+++..+..+....++.+..|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  343 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred             ccccchhhhHHHHHHhhhccccc-----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            34445666666666665554322                       3467778888999999999999999999999999


Q ss_pred             hhhHHHHhHH-HHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840          399 AMKSIGSAYA-ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  476 (499)
Q Consensus       399 ~mr~~~~gl~-~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~  476 (499)
                      +.|+..+|+. .+..++|..+++.+...+....        +          ....|++.++++++..++..+.-|+-+
T Consensus       344 ~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~--------g----------~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------G----------FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--------C----------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------C----------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999975 4667788888888776543211        0          234667777888777777666665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1e-05  Score=79.90  Aligned_cols=113  Identities=10%  Similarity=-0.080  Sum_probs=84.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840          284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  363 (499)
Q Consensus       284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~  363 (499)
                      ++.+...+...+..|+...+    ..|.       +..+-+.+|+++.+++.+..+.+...                  .
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~------------------~  113 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA------------------T  113 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHhhccccchh------------------h
Confidence            44455555555666655444    4442       33344778888888888777665321                  0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840          364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  426 (499)
Q Consensus       364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v  426 (499)
                       .+.++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+....
T Consensus       114 -~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence             34567777889999999999999999999999999999999999999999999888776653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00034  Score=66.86  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840           52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGAL  130 (499)
Q Consensus        52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~~~~~i~~~~g~~~~F~i~  130 (499)
                      .+.+++...+.+++.|...+...++..|.++++.      |.+.+...+. +.++|..+++.+.+++.|+.||+..|.+.
T Consensus       312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~  385 (417)
T d1pv7a_         312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence            4566777788899999999999999999988533      5677887664 45699999999999999999999999888


Q ss_pred             HHHHHHHHHHHHh
Q 010840          131 AIAMGISNMLFFI  143 (499)
Q Consensus       131 ~~~m~l~~i~f~~  143 (499)
                      ++..+++.++.++
T Consensus       386 ~~~~~~~~~~~~~  398 (417)
T d1pv7a_         386 GLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8777766665444