Citrus Sinensis ID: 010841

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MWESESESLGGRDYGNGVLSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
ccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEEEccccccccHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccccccccHHcccHHHHHEEEHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccc
ccccccccccccccccccHHHcccccccccHEcccccEEEEccccccEEEEEccEEEEEcccccccccHHHHHHHEccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHcccccc
mweseseslggrdygngvlsstklsvktdgfelrgqswyvatdipsdflVQIGDVnfhlhkypllsrsgkmnrliYESRDSELNkivlddlpggpeAFELAAKFCYGIAVdltasnisGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWkacanpkgirwaytgrppkisspkwndmkdsspsrsqpvppdwwfedvsilrIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLiressgtadeissysasnsngscsswkGGLHMIVAGmkddpptvqakDQRMIIESLIsiippqkdsvSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLlipayskgetlyDVDLVQRLLEHFLVQeqtessspsrqsfsdkhmydasqrgngtsaKMRVARLVDGYLTEVARDRNLSLTKFQVLAEAlpesartcdDGLYRAIDSYLKVISNFCY
mweseseslggrdygngvlssTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHkypllsrsgkMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPkisspkwndmkdsspsrsqpvppdWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLisiippqkdsVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVqeqtessspsrqsfsdKHMYDasqrgngtsakmrVARLVDGYLTEvardrnlslTKFQVLAealpesartcddGLYRAIDSYLKVISNFCY
MWESESESLGGRDYGNGVLSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIssysasnsngscssWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
**********************KLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTG**************************DWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIR***********************WKGGLHMIVAG************QRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV*********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFC*
******************************FELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKM****************LDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACAN*************************************WWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS*************SNGSCSSWKGG*****************KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFL**********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNF**
**********GRDYGNGVLSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPK***************PPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS*****************CSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV********************DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
***************NGVLSSTK*SVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRW*Y*************************VPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGL*********************************************AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQ*************************TSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
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MWESESESLGGRDYGNGVLSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query499 2.2.26 [Sep-21-2011]
Q9FMF5 746 Root phototropism protein yes no 0.985 0.659 0.714 0.0
Q5KS50 762 Coleoptile phototropism p yes no 0.981 0.643 0.598 1e-175
Q9S9Q9 665 BTB/POZ domain-containing no no 0.895 0.672 0.417 1e-101
Q9LYW0 592 BTB/POZ domain-containing no no 0.885 0.746 0.389 1e-92
Q9LFU0 607 Putative BTB/POZ domain-c no no 0.833 0.685 0.372 8e-91
Q9FN09 579 BTB/POZ domain-containing no no 0.831 0.716 0.390 4e-89
Q9FNB3 591 Putative BTB/POZ domain-c no no 0.863 0.729 0.393 1e-85
Q9FYC8 651 BTB/POZ domain-containing no no 0.883 0.677 0.376 1e-82
Q9FKB6 614 BTB/POZ domain-containing no no 0.789 0.641 0.378 3e-81
Q8H1D3 571 BTB/POZ domain-containing no no 0.817 0.714 0.364 3e-81
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function desciption
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/553 (71%), Positives = 429/553 (77%), Gaps = 61/553 (11%)

Query: 1   MWESESESLGG------RDYGNGVLSSTKLS-VKTDGFELRGQSWYVATDIPSDFLVQIG 53
           MWESES+   G      R+YG+GVLSS K   VKTDGFELRGQSW+VATDIPSD LV+IG
Sbjct: 2   MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 54  DVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT 113
           D+NFHLHKYPLLSRSGKMNRLIYESRD +   ++LDDLPGGPEAFELA+KFCYG+ VDLT
Sbjct: 62  DMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLT 121

Query: 114 ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAEN 173
           A+NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAEN
Sbjct: 122 ATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAEN 181

Query: 174 LQIVRRCSESIAWKACANPKGIRWAYTGRPPKI-------SSPKWNDMKDS----SPSR- 221
           LQIVRRCSESIAWKAC+NPKGIRWAYTG+ P         SSP+WN+ KDS    SPSR 
Sbjct: 182 LQIVRRCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRN 241

Query: 222 --SQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS 279
             SQPVPPDWWFEDVSILRIDHFVRV+TAIKVKGMRFEL+GA IMHYA KWL GLI+E  
Sbjct: 242 TNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGG 301

Query: 280 -GTADEISS-----------------YSASNSNGSCSSWKGGLHMIVAGMKDDPPT---- 317
              A  +SS                  S S+   S   WKGGLHM+++  K +       
Sbjct: 302 VAIAPAMSSAIGGGLGLGGDEMSISCGSNSSGGSSGPDWKGGLHMVLSAGKTNGHQDSVA 361

Query: 318 ------VQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVG 371
                 +  KDQRMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVG
Sbjct: 362 CLAGLGISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVG 421

Query: 372 MQFEQATLADLLIPAY-SKGETLYDVDLVQRLLEHFLVQEQTES-SSPSRQSFSDKHMYD 429
           MQFEQATL DLLIP Y +KGET+YDVDLVQRLLEHFLVQEQTE  S         + MY 
Sbjct: 422 MQFEQATLQDLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYA 481

Query: 430 ASQR----------GNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTC 479
              R          GN  +AKMRVARLVD YLTEVARDRNL LTKFQVLAEALPESARTC
Sbjct: 482 DIPRGNNNNGGGGGGNNQNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTC 541

Query: 480 DDGLYRAIDSYLK 492
           DDGLYRAIDSYLK
Sbjct: 542 DDGLYRAIDSYLK 554
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
225464091 674 PREDICTED: root phototropism protein 3 [ 0.985 0.729 0.869 0.0
224095855 676 predicted protein [Populus trichocarpa] 0.985 0.727 0.872 0.0
147838167 665 hypothetical protein VITISV_002200 [Viti 0.967 0.726 0.865 0.0
224141185 672 predicted protein [Populus trichocarpa] 0.979 0.727 0.861 0.0
255563230 663 hypothetical protein RCOM_0884570 [Ricin 0.963 0.725 0.888 0.0
449438761 675 PREDICTED: root phototropism protein 3-l 0.985 0.728 0.843 0.0
356554757 672 PREDICTED: root phototropism protein 3-l 0.977 0.726 0.813 0.0
357476259 669 Root phototropism protein [Medicago trun 0.975 0.727 0.787 0.0
356519459 675 PREDICTED: root phototropism protein 3-l 0.973 0.72 0.811 0.0
356547450501 PREDICTED: root phototropism protein 3-l 0.991 0.988 0.813 0.0
>gi|225464091|ref|XP_002269380.1| PREDICTED: root phototropism protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/492 (86%), Positives = 458/492 (93%)

Query: 1   MWESESESLGGRDYGNGVLSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLH 60
           MWES+SE +GGRDYGNGVL S+K  VK DGFELRGQSWYVATDIPSDFLVQIGDV+FHLH
Sbjct: 1   MWESDSELVGGRDYGNGVLGSSKHGVKNDGFELRGQSWYVATDIPSDFLVQIGDVSFHLH 60

Query: 61  KYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGL 120
           KYPLLSRSGKMNR+IYES +++LNKI  DDLPGGPEAFELAAKFCYGIAVDLTA+NISGL
Sbjct: 61  KYPLLSRSGKMNRIIYESHNADLNKIAFDDLPGGPEAFELAAKFCYGIAVDLTAANISGL 120

Query: 121 RCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRC 180
           RCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRC
Sbjct: 121 RCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRC 180

Query: 181 SESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRID 240
           SESIAWKACANPKGI+WAYTG+P K+SSPKWN+MKDSSPSR Q VPPDWWFEDVSILRID
Sbjct: 181 SESIAWKACANPKGIKWAYTGKPLKVSSPKWNEMKDSSPSRGQQVPPDWWFEDVSILRID 240

Query: 241 HFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSW 300
           HFVRV+TAIKVKGMRFELIGA+IM YA KWL GLI+E  GT       ++SN +   SSW
Sbjct: 241 HFVRVITAIKVKGMRFELIGASIMQYATKWLPGLIKEGMGTGMGDEGSNSSNGSSGSSSW 300

Query: 301 KGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAP 360
           KGGL M+VAG KDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAP
Sbjct: 301 KGGLQMVVAGAKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAP 360

Query: 361 ALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQ 420
           ALVTELEKRVGMQFEQATLADLLIP+Y+K ETLYDVDLVQRLLEHFLVQEQT+SSSPSRQ
Sbjct: 361 ALVTELEKRVGMQFEQATLADLLIPSYNKSETLYDVDLVQRLLEHFLVQEQTDSSSPSRQ 420

Query: 421 SFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCD 480
            F +KH+Y+ +QRGNG++AKMRVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCD
Sbjct: 421 PFPEKHLYEGTQRGNGSNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCD 480

Query: 481 DGLYRAIDSYLK 492
           DGLYRAIDSYLK
Sbjct: 481 DGLYRAIDSYLK 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224095855|ref|XP_002310495.1| predicted protein [Populus trichocarpa] gi|222853398|gb|EEE90945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147838167|emb|CAN60915.1| hypothetical protein VITISV_002200 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141185|ref|XP_002323955.1| predicted protein [Populus trichocarpa] gi|222866957|gb|EEF04088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563230|ref|XP_002522618.1| hypothetical protein RCOM_0884570 [Ricinus communis] gi|223538094|gb|EEF39705.1| hypothetical protein RCOM_0884570 [Ricinus communis] Back     alignment and taxonomy information
>gi|449438761|ref|XP_004137156.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554757|ref|XP_003545709.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357476259|ref|XP_003608415.1| Root phototropism protein [Medicago truncatula] gi|355509470|gb|AES90612.1| Root phototropism protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356519459|ref|XP_003528390.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356547450|ref|XP_003542125.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.563 0.376 0.795 2.8e-198
TAIR|locus:2028160 665 AT1G30440 [Arabidopsis thalian 0.521 0.390 0.432 1.6e-94
TAIR|locus:2143558 592 AT5G03250 [Arabidopsis thalian 0.490 0.413 0.445 2.1e-88
TAIR|locus:2158182 579 NPY3 "NAKED PINS IN YUC MUTANT 0.507 0.436 0.453 5.7e-86
TAIR|locus:2173204 591 AT5G13600 [Arabidopsis thalian 0.515 0.434 0.405 3.6e-82
TAIR|locus:2156524 614 AT5G48800 [Arabidopsis thalian 0.460 0.374 0.436 7.4e-80
TAIR|locus:2082132 651 AT3G44820 [Arabidopsis thalian 0.893 0.685 0.386 1.1e-78
TAIR|locus:504954965 604 AT5G67385 [Arabidopsis thalian 0.492 0.407 0.416 4.6e-78
TAIR|locus:2046961 634 NPY2 "NAKED PINS IN YUC MUTANT 0.494 0.389 0.407 5.9e-78
TAIR|locus:2064357 593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.308 0.259 0.496 2.1e-75
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1225 (436.3 bits), Expect = 2.8e-198, Sum P(2) = 2.8e-198
 Identities = 241/303 (79%), Positives = 261/303 (86%)

Query:     1 MWESESESL------GGRDYGNGVLSSTKLS-VKTDGFELRGQSWYVATDIPSDFLVQIG 53
             MWESES+        GGR+YG+GVLSS K   VKTDGFELRGQSW+VATDIPSD LV+IG
Sbjct:     2 MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query:    54 DVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT 113
             D+NFHLHKYPLLSRSGKMNRLIYESRD +   ++LDDLPGGPEAFELA+KFCYG+ VDLT
Sbjct:    62 DMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLT 121

Query:   114 ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAEN 173
             A+NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAEN
Sbjct:   122 ATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAEN 181

Query:   174 LQIVRRCSESIAWKACANPKGIRWAYTGRPPKIS-------SPKWNDMKDSS----PSR- 221
             LQIVRRCSESIAWKAC+NPKGIRWAYTG+ P  S       SP+WN+ KDSS    PSR 
Sbjct:   182 LQIVRRCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRN 241

Query:   222 --SQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS 279
               SQPVPPDWWFEDVSILRIDHFVRV+TAIKVKGMRFEL+GA IMHYA KWL GLI+E  
Sbjct:   242 TNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEG- 300

Query:   280 GTA 282
             G A
Sbjct:   301 GVA 303
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM;IDA;NAS
GO:0009416 "response to light stimulus" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009785 "blue light signaling pathway" evidence=IGI;IPI
GO:0016567 "protein ubiquitination" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009638 "phototropism" evidence=IMP
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5KS50NPH3_ORYSJNo assigned EC number0.59820.98190.6430yesno
Q9FMF5RPT3_ARATHNo assigned EC number0.71420.98590.6595yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
pfam03000249 pfam03000, NPH3, NPH3 family 1e-101
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 8e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  302 bits (777), Expect = e-101
 Identities = 122/268 (45%), Positives = 163/268 (60%), Gaps = 46/268 (17%)

Query: 227 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIS 286
            DWWFED+S L ID F RV+TA+K +G++ E+IG A+MHYA KWL GL R  S   D   
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEED--- 57

Query: 287 SYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFL 346
                                             ++QR ++E+++S++P +K SVSCSFL
Sbjct: 58  --------------------------------SEEEQRALLETIVSLLPSEKGSVSCSFL 85

Query: 347 LRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA-YSKGETLYDVDLVQRLLEH 405
            +LLR A +L  + +   ELE+R+G+Q +QATL DLLIP+ YS  ETLYDVDLVQR+LE 
Sbjct: 86  FKLLRAAIILGASESCREELERRIGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEV 145

Query: 406 FLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 465
           FL ++    SS            + S+    +S+ ++VA+LVDGYL E+A D NL L+KF
Sbjct: 146 FLSRDAATQSSDD----------EDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKF 195

Query: 466 QVLAEALPESARTCDDGLYRAIDSYLKV 493
             LAEA+P+SAR   DGLYRAID YLK 
Sbjct: 196 IALAEAVPDSARPSHDGLYRAIDIYLKA 223

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 499
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA02790480 Kelch-like protein; Provisional 99.92
PHA02713 557 hypothetical protein; Provisional 99.92
PHA03098 534 kelch-like protein; Provisional 99.88
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.73
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.62
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.38
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.16
KOG4591280 consensus Uncharacterized conserved protein, conta 99.01
KOG4682488 consensus Uncharacterized conserved protein, conta 98.66
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.37
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.12
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.88
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.73
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.65
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.19
KOG2838401 consensus Uncharacterized conserved protein, conta 95.15
KOG3473112 consensus RNA polymerase II transcription elongati 94.93
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.57
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.49
KOG3840438 consensus Uncharaterized conserved protein, contai 91.62
KOG2838401 consensus Uncharacterized conserved protein, conta 88.45
KOG0511516 consensus Ankyrin repeat protein [General function 82.83
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=2.2e-80  Score=615.05  Aligned_cols=236  Identities=54%  Similarity=0.870  Sum_probs=205.4

Q ss_pred             CCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 010841          227 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM  306 (499)
Q Consensus       227 ~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (499)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||+||||++++......                        
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~------------------------   56 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSS------------------------   56 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccc------------------------
Confidence            58999999999999999999999999999999999999999999999966421110                        


Q ss_pred             eecCCCCCCcchhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccceeccc
Q 010841          307 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA  386 (499)
Q Consensus       307 ~~~~~~~~~~~~~~~~~r~llEtiv~lLP~ek~~vsc~fL~~LLr~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs  386 (499)
                          ...........+||.+||+||+|||.+|++|||+|||+|||+|+++++|+.||.+||+|||+|||||||||||||+
T Consensus        57 ----~~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~  132 (258)
T PF03000_consen   57 ----SSAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS  132 (258)
T ss_pred             ----ccccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence                0111223455699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCCCCcccchHHHHHHHHHHHhccccCCCCCCcccccccccccccccCCCchhHHHHHHhhhhhhhhccCCCCCChhHH
Q 010841          387 -YSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF  465 (499)
Q Consensus       387 -~~~~~tlYDVd~V~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVakLvD~YLaEVA~D~nL~~~KF  465 (499)
                       ++.++|+||||+|+|||++||.+++..+......        .....+++.+++.+||||||+||+|||+|+||||+||
T Consensus       133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF  204 (258)
T PF03000_consen  133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESE--------SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF  204 (258)
T ss_pred             CCCcccchhhHHHHHHHHHHHHhcccccccccccc--------cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence             4466799999999999999999976533111000        0011256788999999999999999999999999999


Q ss_pred             HHHHHhcCCCcccCCCchhHHHHHhhhhcCCCC
Q 010841          466 QVLAEALPESARTCDDGLYRAIDSYLKVISNFC  498 (499)
Q Consensus       466 ~~Lae~lPd~aR~~~DgLYRAIDiYLKaHp~l~  498 (499)
                      ++|||++|++||++|||||||||||||+||+|-
T Consensus       205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls  237 (258)
T PF03000_consen  205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLS  237 (258)
T ss_pred             HHHHHHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence            999999999999999999999999999999973

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-04
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-04
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 98/594 (16%), Positives = 171/594 (28%), Gaps = 162/594 (27%)

Query: 31  FELRGQSWYVATDIPSDFLVQ-IGDVNF-HLHKYPLLSRSGKMNRLIYESRDSELN-KIV 87
           FE  G+  Y   DI S F    + + +   +   P    S +    I  S+D+      +
Sbjct: 9   FET-GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 88  LDDLPGGPEAFELAAKFC-------YG-IAVDLTASNISGLRCAAEYLEMTEDLEEGNLI 139
              L    E  E+  KF        Y  +   +             Y+E  + L   N  
Sbjct: 68  FWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-- 123

Query: 140 FKTEAFLSYVVLSSWR-DSIIVLKSC-EKLSPWAENLQI--VRRCSESI-AWKACANPK- 193
              + F  Y V    R    + L+    +L P A+N+ I  V    ++  A   C + K 
Sbjct: 124 ---QVFAKYNV---SRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 194 ------GIRWAYTGRPPKISS-------------PKWNDMKDSSPSRSQPVPPDWWFEDV 234
                  I W          +             P W    D S +    +       ++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAEL 234

Query: 235 S-------------ILR-------IDHF-----VRVVTAIKVKGMRFELIGAAIMHYAAK 269
                         +L         + F     + + T  + K +   L  A   H +  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHIS-- 290

Query: 270 WLTGLIRESSG-TADEISSYSASNSNGSCSS-----WKGG---LHMIVAGMKDDPPT--- 317
               L   S   T DE+ S      +                 L +I   ++D   T   
Sbjct: 291 ----LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 318 ---VQAKDQRMIIESLISIIPP---QKDSVSCS-F---------LLRLLRMANMLKVAPA 361
              V       IIES ++++ P   +K     S F         LL L+    +      
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 362 LVTELEKRV--------------GMQFE-------QATLADLLIPAYSKGETLYDVDLVQ 400
           +V +L K                 +  E       +  L   ++  Y+  +T    DL+ 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 401 RLLE---------HFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVA------- 444
             L+         H    E  E  +  R  F D    +   R + T+     +       
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 445 -RLVDGYLT--EVARDRNL-SLTKF-QVLAEALPESARTC---------DDGLY 484
            +    Y+   +   +R + ++  F   + E L  S  T          D+ ++
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.93
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.92
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.88
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.87
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.87
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.87
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.87
2vpk_A116 Myoneurin; transcription regulation, transcription 99.87
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.87
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.86
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.86
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.86
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.85
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.85
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.85
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.85
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.84
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.84
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.81
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.79
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.44
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.26
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.12
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.96
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.41
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.36
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.29
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.75
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.63
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.16
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.4
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.86
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 93.73
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.2
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 92.1
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 89.77
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.93  E-value=2.5e-26  Score=227.77  Aligned_cols=230  Identities=11%  Similarity=0.163  Sum_probs=175.6

Q ss_pred             cchhhhhhcCCCeeEEEEEC---CEEEEeccccccccCHHHHHhhcCC-CCCCCceEEcc------CCCCCHHHHHHHHH
Q 010841           34 RGQSWYVATDIPSDFLVQIG---DVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLD------DLPGGPEAFELAAK  103 (499)
Q Consensus        34 ~~~~~~r~~~~lcDV~l~V~---~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~------~~pgga~afell~~  103 (499)
                      ++.+.+|.+|.+|||+|.|+   |+.|++||.+|+++|+||++||+++ +|+.+.+|+|+      +++  +++|+.+++
T Consensus        21 ~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~   98 (279)
T 3i3n_A           21 WRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIE   98 (279)
T ss_dssp             HHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHH
Confidence            45778999999999999998   9999999999999999999999987 77888899998      555  899999999


Q ss_pred             HHhCceeecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhch---hhHH
Q 010841          104 FCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQI---VRRC  180 (499)
Q Consensus       104 FcYtg~i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~i---v~rc  180 (499)
                      |+|||++.++.+||..++.||++|||++      |++.|++||.+.+.+         .+|..++.+|+.+++   .++|
T Consensus        99 ~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~  163 (279)
T 3i3n_A           99 YMYTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKA  163 (279)
T ss_dssp             HHHHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhCcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHH
Confidence            9999999999999999999999999996      999999999999865         577788888888773   3444


Q ss_pred             HHHHHHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCChHHHH
Q 010841          181 SESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIG  260 (499)
Q Consensus       181 idala~ka~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~  260 (499)
                      .+-|.    .++..+.                                 -.+++..|+.+.+..++....-...+++.|.
T Consensus       164 ~~~i~----~~f~~v~---------------------------------~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf  206 (279)
T 3i3n_A          164 ADMIR----RNFHKVI---------------------------------QDEEFYTLPFHLIRDWLSDLEITVDSEEVLF  206 (279)
T ss_dssp             HHHHH----HTHHHHT---------------------------------TSSGGGGSCHHHHHHHHTCSSCCCSCHHHHH
T ss_pred             HHHHH----HHHHHHh---------------------------------cCcChhcCCHHHHHHHhcCcCCCCCCHHHHH
Confidence            44433    3322221                                 1367889999999999987765555788999


Q ss_pred             HHHHHHHHHHhhcccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCcchhhhhhHHHHHHHHHhCCCCC-C
Q 010841          261 AAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQK-D  339 (499)
Q Consensus       261 ~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiv~lLP~ek-~  339 (499)
                      ++++.|++.-.+                                                 ..+..+..   ||..=| .
T Consensus       207 ~av~~W~~~~~~-------------------------------------------------~r~~~~~~---ll~~VRf~  234 (279)
T 3i3n_A          207 ETVLKWVQRNAE-------------------------------------------------ERERYFEE---LFKLLRLS  234 (279)
T ss_dssp             HHHHHHHHTTHH-------------------------------------------------HHTTTHHH---HHTTSCGG
T ss_pred             HHHHHHHHcCHH-------------------------------------------------HHHHHHHH---HHHhcCCC
Confidence            999999884221                                                 11122222   232212 3


Q ss_pred             cccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010841          340 SVSCSFLLRLLRMANMLKVAPALVTELEKR  369 (499)
Q Consensus       340 ~vsc~fL~~LLr~A~~l~as~~cr~~LE~r  369 (499)
                      .+|..+|..+++..-.+..++.|+.-|..-
T Consensus       235 l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          235 QMKPTYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             GSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence            478999999998888888899998776543
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 499
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-07
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-06
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 46  SDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFC 105
           +D ++ +    F  HK  L++ SG    +  +     L+ I LD     PE F +   F 
Sbjct: 26  TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP-EINPEGFNILLDFM 84

Query: 106 YGIAVDLTASNISGLRCAAEYLEMTE 131
           Y   ++L   NI  +   A YL+M  
Sbjct: 85  YTSRLNLREGNIMAVMATAMYLQMEH 110
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.88
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.88
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.53
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.3
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.59
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.57
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.92
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.24
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 90.39
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-23  Score=180.98  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=95.8

Q ss_pred             chhhhhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCCCCCCCceEEccCCCCCHHHHHHHHHHHhCceeeccc
Q 010841           35 GQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTA  114 (499)
Q Consensus        35 ~~~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~~e~~~~~I~L~~~pgga~afell~~FcYtg~i~it~  114 (499)
                      ..+.+|.+|.+|||+|.|+|++|++||.+||++|+||++||.++    ..++.+++++  +++|+.+++|+|||++.++.
T Consensus        18 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~----~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~   91 (121)
T d1buoa_          18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQAKA   91 (121)
T ss_dssp             HHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCG
T ss_pred             HHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc----cceeecCCCC--HHHHHHHHHheEccccCCcH
Confidence            46789999999999999999999999999999999999999754    3579999987  89999999999999999999


Q ss_pred             chHhhHHHhhcccccccccccCcHHHHHHHHHHH
Q 010841          115 SNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY  148 (499)
Q Consensus       115 ~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~  148 (499)
                      +||..++.||++|||++      |.+.|++||++
T Consensus        92 ~~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          92 EDLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             GGHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            99999999999999997      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure