Citrus Sinensis ID: 010847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Secondary Structure (PSIPRED)
ccccEEEEEcccccEEEccccccccccccccEEEEcccccccccccEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEEEccEEEEEEcccccccccEEEEEEEcccccEEEEEccccccccccccEEEEEccEEEEEcccccccccccEEEEEEccccEEEEEEccccccccccccEEEEEcccEEEEEcccccccccccEEEEEcccccEEcccccccccccccccEEEEEccEEEEEEccccccccccEEEEEccccEEEEEcccccccccccccccEEEEEEEcccEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHcHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccEEccccccccccccccEEEEEEcccccccccEEEEEcccccEEEEcccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEcccccccccccEEEEccccccEccccccccccccccccEEEEEcccEEEEEEccccccccccEEEEccccccEEcccccccccccccccEEEEEccEEEEEEccccccccccEEEEcccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEccccccccEEEEEcccccccccccccccccccccccEEcccEEEEcccEccccccccHHcccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEccc
Coil and Loop (DISEMBL)
mdsgswhlelpydlwvtlpvsgarpsprykklyivggsrngrflsdvqVFDLRSLAWSNLRLEteldadktedsgllevlppmsdhcmvkWGTKLLILgghykkssdSMIVRFIDLETNlcgvmetsgkvpvargghsvTLVGSRLIifggedrsrkllndvhfldletmtwdavevtqtppaprydhsaalHANRYLIVFGgcshsiffndlhvldlqtnewsqpeikgdlvtgraghagitidenwyivgggdnnngcQETIVLNMTKLAWSILTSvkgrnplaseglSVCSAIIEGEHHLVAfggyngkynnEVFVMrlkprdiprpkifqspAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Flexible Loop (DISEMBL)
mdsgswhlELPYDLWVTlpvsgarpspRYKKLYIVGgsrngrflsDVQVFDLRSLAWSNLRLeteldadktedSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGkvpvargghsvtlVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrtdidaikedkrvlelsltevrtensrfrekideVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAtsvqtqgsggvWRWIAGGQ
Low Complexity Region (SEG)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPaaaaaaasvtaayalaKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Disordered region (IsUnstruct)
*****WHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDA*****SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKS**LDI*******FAGI*******************************************************************RCFKLEAQI*******************************************GVWRWI****
Disordered Region (DISOPRED)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELD*******GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS*****PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPR********************ALAKSEK***********************RTDI*************************************************************************************************************RWIAGG*
Disordered Region (DISEMBL)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ************AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE*******************VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS****************SGGVWRWIAGGQ
Disordered Region (DISPRO)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL*********LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS******GG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTExxxxxxxxxxxxxxxxxxxxxLSSVQGQLVAERSRCFKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQGSGGVWRWIAGGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
Q9MA55	668	Acyl-CoA-binding domain-c	no	no	0.959	0.717	0.453	1e-123
Q8RWD9	648	Acyl-CoA-binding domain-c	no	no	0.933	0.719	0.439	1e-116
Q7M3S9	943	RING finger protein B OS=	no	no	0.462	0.244	0.315	3e-23
Q5EA50	372	Rab9 effector protein wit	yes	no	0.501	0.672	0.258	6e-21
Q7Z6M1	372	Rab9 effector protein wit	yes	no	0.444	0.596	0.284	4e-19
Q4V8F4	372	Rab9 effector protein wit	yes	no	0.496	0.666	0.275	5e-19
Q8VCH5	380	Rab9 effector protein wit	yes	no	0.496	0.652	0.271	7e-19
A8JAM0	1159	Coiled-coil domain-contai	N/A	no	0.384	0.165	0.304	2e-17
P80197	737	Actin-fragmin kinase OS=P	N/A	no	0.318	0.215	0.310	2e-16
Q5ZJ37	371	Rab9 effector protein wit	yes	no	0.454	0.611	0.251	4e-16

>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/498 (45%), Positives = 328/498 (65%), Gaps = 19/498 (3%)

Query: 12  YDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 63
           Y+ W     SG RP  RY+        K+YI GG+ NGR+L D+ V DL+S  WS  R+E
Sbjct: 168 YNQWTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWS--RVE 225

Query: 64  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 123
           T++ A +++++    +L P + H ++ W  KLL +GGH K  S+SM V+  D  T    +
Sbjct: 226 TKV-ATESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSM 284

Query: 124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 183
           ++T GK PV+RGG SVT+VG  L+IFGG+D  R LLND+H LDL+TMTWD ++     P+
Sbjct: 285 LKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPS 344

Query: 184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 243
           PR DH+AA+HA R+L++FGG SH+  F+DLHVLDLQT EWS+P  +GD  T RAGHAG+T
Sbjct: 345 PRSDHAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVT 404

Query: 244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 303
           I ENW+IVGGGDN +G  E++VLNM+ LAWS++ SV+GR PLASEGLS+  +   GE  L
Sbjct: 405 IGENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLASEGLSLVVSSYNGEDVL 464

Query: 304 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 363
           VAFGGYNG+YNNE+ +++   +   + K  ++P   + +A   A     +SE +++ +  
Sbjct: 465 VAFGGYNGRYNNEINLLKPSHKSTLQTKTLEAPLPGSLSAVNNATTRDIESE-VEVSQEG 523

Query: 364 SSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 419
             +   + N       E +    I  IK +K  LE SL + R +  + R+++ E    ++
Sbjct: 524 RVREIVMDNVNPGSKVEGNSERIIATIKSEKEELEASLNKERMQTLQLRQELGEAELRNT 583

Query: 420 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 479
           +L KEL SV+GQL AE+SRCFKLE  +AEL++ L++ +T++ E+++L++QK+A EQ    
Sbjct: 584 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQKELELLQRQKAASEQA--- 640

Query: 480 ATSVQTQGSGGVWRWIAG 497
           A + + QGSGGVW W+AG
Sbjct: 641 AMNAKRQGSGGVWGWLAG 658

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/494 (43%), Positives = 314/494 (63%), Gaps = 28/494 (5%)

Query: 12  YDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 63
           Y+ W     SG  P  RY+        K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct: 169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query: 64  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 123
           T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct: 227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query: 124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 183
           ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct: 286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query: 184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 243
           PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct: 346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query: 244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 303
           I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct: 406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query: 304 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 363
           VAFGGYNG YNNEV V++   +   + KI  + A   + ++V  A         DI   +
Sbjct: 466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATT------RDIESEI 519

Query: 364 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 423
             K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct: 520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query: 424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 483
           EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q+ A   E     + 
Sbjct: 570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQR-AVASEQAATMNA 628

Query: 484 QTQGSGGVWRWIAG 497
           + Q SGGVW W+AG
Sbjct: 629 KRQSSGGVWGWLAG 642

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 115/257 (44%), Gaps = 26/257 (10%)

Query: 12  YDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDL---RSLAWSNLRLETELDA 68
           Y     L  S +RP     ++   GG    +  SD+ +  +   RS  W  +  ++    
Sbjct: 69  YGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFIWKQVTTKS---- 124

Query: 69  DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETS 127
                      +   + H  V +   L++ GGH   KS     V    LE+N        
Sbjct: 125 -----------IEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCG 173

Query: 128 GKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 186
           G +P AR  HS   V + ++ IFGG D  +K  ND+++LDLET  W  VE   TPP PR 
Sbjct: 174 GVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIWKKVEAKGTPPKPRS 232

Query: 187 DHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEIKG-DLVTGRAGHAG 241
            HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP   G ++   R  H  
Sbjct: 233 GHSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTT 292

Query: 242 ITIDENWYIVGGGDNNN 258
             I    YI  G  + N
Sbjct: 293 NFIGGRVYIYAGTGSGN 309

Dictyostelium discoideum (taxid: 44689)

>sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 32/282 (11%)

Query: 13  DLWVTLPVSGARPSPRYK---------------KLYIVGGSRNGRFLSDVQVFDLRSLAW 57
           + W TL + G  P  R                 K++IVGG+   R  SDV   DL +  W
Sbjct: 16  ETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQW 75

Query: 58  SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 117
                E  L   + E +  +    P S          + + GG   +S +   ++ ++ +
Sbjct: 76  DLATSEGLLP--RYEHTSFIPSCTPHS----------IWVFGG-ADQSGNRNCLQVLNPD 122

Query: 118 TNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDA 174
           T      E +G  P  R  H S   +G +L +FGG +R  + + DV  H  D  T+TW  
Sbjct: 123 TRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQ 182

Query: 175 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 234
            E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   T
Sbjct: 183 PETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPT 241

Query: 235 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 276
           G A H+ + + ++ Y+ GG             ++ K  W++L
Sbjct: 242 GCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Bos taurus (taxid: 9913)

>sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 38/260 (14%)

Query: 15  WVTLPVSGARPSPRYK---------------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 59
           W TL V G  P  R                 K++IVGG+   R  SDV   DL    W  
Sbjct: 18  WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQW-- 75

Query: 60  LRLETELDADKTEDSGLLEVLPPMSDHC-MVKWGT--KLLILGGHYKKSSDSMIVRFIDL 116
                +LD  K    GLL    P  +H   +   T  ++ + GG   +S +   ++ ++ 
Sbjct: 76  -----DLDTCK----GLL----PRYEHASFIPSCTPDRIWVFGG-ANQSGNRNCLQVLNP 121

Query: 117 ETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTWD 173
           ET      E +   P  R  H S   +G++L +FGG +R  + + D  +H  D  T+TW 
Sbjct: 122 ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWS 181

Query: 174 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 233
             E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   
Sbjct: 182 QPETLGNPPSPRHGH-VMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAP 240

Query: 234 TGRAGHAGITIDENWYIVGG 253
            G A H+ + + ++ YI GG
Sbjct: 241 AGCAAHSAVAMGKHVYIFGG 260

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Homo sapiens (taxid: 9606)

>sp|Q4V8F4|RABEK_RAT Rab9 effector protein with kelch motifs OS=Rattus norvegicus GN=Rabepk PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 117/280 (41%), Gaps = 32/280 (11%)

Query: 15  WVTLPVSGARPSPRYK---------------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 59
           W TL   G +P PR                 K++IVGG+   +  SDV   DL +  W  
Sbjct: 18  WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query: 60  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 119
              E  L   + E +  L    P S          + + GG   +S +   ++ ++ E  
Sbjct: 78  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMNPEAR 124

Query: 120 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 176
                E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query: 177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236
              +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct: 185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query: 237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 276
           A HA + +  + Y+ GG             +  K  W+IL
Sbjct: 244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Rattus norvegicus (taxid: 10116)

>sp|Q8VCH5|RABEK_MOUSE Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 32/280 (11%)

Query: 15  WVTLPVSGARPSPRYK---------------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 59
           W TL   G RP PR                 K++IVGG+   +  SDV   DL +  W  
Sbjct: 26  WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query: 60  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 119
              E  L   + E +  L    P S          + + GG   +S +   ++ +  E  
Sbjct: 86  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMSPEDR 132

Query: 120 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 176
                E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query: 177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236
              +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct: 193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query: 237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 276
           A HA + +  + Y+ GG             +  K  W++L
Sbjct: 252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Mus musculus (taxid: 10090)

>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 15/207 (7%)

Query: 86  HCMVKWGTKLLILGGHYKKSSDS------MIVRFIDLETNLCGVMETSGKVPVARGGHSV 139
           H + + G+ LLI GG  +K   +      M +  ++     C      G+ P  R  H+ 
Sbjct: 301 HTLTQVGSMLLIFGGQLQKDGSTTNDLFWMTMDRMEWHNQPC-----KGEKPPPRYNHAA 355

Query: 140 TL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY 197
                 +RL++FGG    RK LND++FLDL++ TW       T P PR    A   A   
Sbjct: 356 CYDEENNRLVVFGGRTAERKRLNDIYFLDLDSWTWFKPSTEGTAPTPREQAVATFWAGS- 414

Query: 198 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 257
           +++FGG +     NDL +LDL   +WSQP   G   + R   A      N   V GG NN
Sbjct: 415 MVLFGGHAIGGRTNDLFLLDLGAWQWSQPAFSGTAPSPRQACALCIGHGNLLFVHGGRNN 474

Query: 258 NGCQETIVLNMTKLAWSILTSVKGRNP 284
              ++  V++     W+ +   +GR P
Sbjct: 475 FVLEDLHVMDFVSKNWTEI-PCEGRVP 500

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P80197|AFK_PHYPO Actin-fragmin kinase OS=Physarum polycephalum PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 82  PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL 141
           P   H  V +  KL + GG   K++ +    F D       ++   G+ P  R GHS T+
Sbjct: 419 PRRYHSGVLYEGKLYVFGGVCIKTASNDFYVF-DFAKKKWSIVVAQGEAPSPRCGHSATV 477

Query: 142 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDHSAALHANRYLI 199
            G ++ IFGG + +++  +D++  D    TW+ +E T+    P+PRY HSA L     L 
Sbjct: 478 YGGKMWIFGGHNNNKQPYSDLYTFDFAKSTWEKIEPTKDGPWPSPRYHHSATL-VGASLY 536

Query: 200 VFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 242
           +FGG  H S + ND++V     N+W      G+    RAG   +
Sbjct: 537 IFGGAEHKSKYHNDVYVYKFDANQWELLNATGETPEPRAGQMTV 580

Has a role in the regulation of microfilament formation. Phosphorylates the actin-fragmin complex on threonine residues, in vitro.

Physarum polycephalum (taxid: 5791)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5ZJ37|RABEK_CHICK Rab9 effector protein with kelch motifs OS=Gallus gallus GN=RABEPK PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 27/254 (10%)

Query: 31  KLYIVGGSRNGRFLSDVQVFDLRS-----LAWSNLRLETELDADKTEDSGLLEVLPPMSD 85
           ++ ++GG+      +D    +L +      AWS LR   E        + L    PP   
Sbjct: 47  RVLLLGGADPAGAFADAHFVELGAHLWAPAAWSGLRPRYE------HATFLSACRPP--- 97

Query: 86  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGS 144
                   +L + GG ++  + S  V+ +D E       E +G  P+ R  H S   +G 
Sbjct: 98  --------RLWVFGGAHRAGNRS-CVQVLDPEIGTWESPEVTGIPPLPRTFHTSSAAIGD 148

Query: 145 RLIIFGGEDRSRKLLND--VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 202
            L +FGG D+  + + D  +H  D   + W   +    PP+PR+ H       + L + G
Sbjct: 149 CLYVFGGGDKGAEPVKDQQLHVFDTVALAWTQPDTHGDPPSPRHGHVVVAVGTK-LFIHG 207

Query: 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE 262
           G +  IF+NDL  +D    +W +    GD+  GRA H+     ++ YI GG   +     
Sbjct: 208 GLAGDIFYNDLFCIDTTDMKWVKIAATGDVPGGRASHSSAVFKDHLYIFGGIGPDGTLDT 267

Query: 263 TIVLNMTKLAWSIL 276
           T   ++ +  W++L
Sbjct: 268 TYKYHIEEQQWTLL 281

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
224113141	512	predicted protein [Populus trichocarpa]	0.991	0.966	0.734	0.0
225448900	508	PREDICTED: acyl-CoA-binding domain-conta	0.993	0.976	0.714	0.0
449465316	509	PREDICTED: acyl-CoA-binding domain-conta	0.987	0.968	0.661	0.0
15237715	514	kelch repeat-containing protein [Arabido	0.981	0.953	0.658	0.0
255583742	512	acyl-CoA binding protein, putative [Rici	0.875	0.853	0.749	0.0
15724206	514	AT5g04420/T32M21_20 [Arabidopsis thalian	0.981	0.953	0.656	0.0
297810527	514	kelch repeat-containing protein [Arabido	0.981	0.953	0.658	0.0
356576361	504	PREDICTED: acyl-CoA-binding domain-conta	0.987	0.978	0.630	0.0
115449833	519	Os02g0822800 [Oryza sativa Japonica Grou	0.969	0.932	0.525	1e-140
357137701	523	PREDICTED: acyl-CoA-binding domain-conta	0.965	0.921	0.520	1e-135

>gi|224113141|ref|XP_002316404.1| predicted protein [Populus trichocarpa] gi|222865444|gb|EEF02575.1| predicted protein [Populus trichocarpa]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/505 (73%), Positives = 423/505 (83%), Gaps = 10/505 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           M+  +W  +LPY+ WV +PVSG RPS RYK        KLYI GGSR GR+L DVQVFD 
Sbjct: 10  MEVANWFSQLPYEQWVPIPVSGTRPSARYKHAAGVADEKLYIAGGSRTGRYLPDVQVFDF 69

Query: 53  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 112
           R L WS+L+L++E D  K+E++G  EVLP  SDH MVKWG KLL+LGGH K +SDSM VR
Sbjct: 70  RGLVWSSLKLKSEADGGKSEENGAQEVLPATSDHSMVKWGNKLLLLGGHSKTTSDSMTVR 129

Query: 113 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 172
           FIDLET+ CG +ETSG  PVARGGHSVTLVGSRLIIFGGEDR+R+LLNDV+ LDLETMTW
Sbjct: 130 FIDLETHACGFIETSGNAPVARGGHSVTLVGSRLIIFGGEDRNRRLLNDVYALDLETMTW 189

Query: 173 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 232
           D V   QTPPAPR+DH+AA++   YL++FGGCSHSIFFNDLHVLDLQT EWSQPE++GDL
Sbjct: 190 DVVVARQTPPAPRFDHTAAINREHYLLIFGGCSHSIFFNDLHVLDLQTMEWSQPEVQGDL 249

Query: 233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 292
           VT RAGHAG+TI ENWYIVGGGDN NGC ET+VLNM+KL WS LTSVK R+PLASEGLSV
Sbjct: 250 VTPRAGHAGVTIGENWYIVGGGDNKNGCPETLVLNMSKLTWSALTSVKERDPLASEGLSV 309

Query: 293 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 352
           CSA+I GE HLVAFGGYNGKYNNEVFVMRLKP D+ RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 310 CSALINGERHLVAFGGYNGKYNNEVFVMRLKPSDVSRPKIFQSPAAAAAAASVTAAYALA 369

Query: 353 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 412
           KSEKLD   +L+    G+GN+ SE D+  +IDA+KE+K+ LEL LTEVR ENSR  EK+D
Sbjct: 370 KSEKLDF-SSLNLNSNGVGNNPSELDLAFEIDALKEEKKELELFLTEVRAENSRLTEKVD 428

Query: 413 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 472
           EVN TH+ELSKEL SVQGQL AERSRCFKLEAQIAELQK+LES Q+IENEVQ+LR+QKSA
Sbjct: 429 EVNGTHAELSKELHSVQGQLAAERSRCFKLEAQIAELQKILESLQSIENEVQLLRRQKSA 488

Query: 473 FEQEMERATSVQTQGSGGVWRWIAG 497
            EQE+ER ++ Q QGSGGVWRWIAG
Sbjct: 489 LEQEIER-SAAQRQGSGGVWRWIAG 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448900|ref|XP_002264719.1| PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|296085942|emb|CBI31383.3| unnamed protein product [Vitis vinifera]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/505 (71%), Positives = 415/505 (82%), Gaps = 9/505 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           MD  +WH EL YD W+ LPVSG RPS RYK        KLYI GGSRNGR+LSDVQVFDL
Sbjct: 1   MDIDNWHSELEYDQWLRLPVSGPRPSARYKHAAAVVDEKLYISGGSRNGRYLSDVQVFDL 60

Query: 53  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 112
           RSLAWS L+L+ E +ADK E++ L EV P  S H M+KWG KLLILGGH K SSD + VR
Sbjct: 61  RSLAWSALKLKMESNADKVEENNLQEVFPATSGHNMIKWGNKLLILGGHSKNSSDGVTVR 120

Query: 113 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 172
            IDLET  CGV++TSGKVPVARGG SVTLVGSRLI+FGGEDRSR LLNDVH LDL+TMTW
Sbjct: 121 AIDLETQQCGVIKTSGKVPVARGGQSVTLVGSRLIMFGGEDRSRHLLNDVHVLDLDTMTW 180

Query: 173 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 232
           D VE TQTPPAPR+DH+AA+HA RYL++FGGCSHSIFFNDLH+LDLQT EWSQP+I+GDL
Sbjct: 181 DVVEATQTPPAPRFDHTAAVHAERYLLIFGGCSHSIFFNDLHILDLQTMEWSQPQIQGDL 240

Query: 233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 292
           VT RAGHAG TIDENWYIVGGGDN +G  ET+V NM+KL WS+LT VK R+PLASEGL+V
Sbjct: 241 VTPRAGHAGTTIDENWYIVGGGDNRSGTPETLVFNMSKLGWSVLTRVKERDPLASEGLNV 300

Query: 293 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 352
           CSA + GE HLV FGGYNGKYNNEVF+M+ KP D  RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 301 CSASVNGEKHLVTFGGYNGKYNNEVFIMKPKPTDSTRPKIFQSPAAAAAAASVTAAYALA 360

Query: 353 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 412
           KSEKLD  +T  S F G+  + S +D   +I+AI+E+ +VLE S+ EV+ ENSR +EKID
Sbjct: 361 KSEKLDFIETEDSNFGGVKENNSAQDFSIEINAIREENKVLESSVAEVKAENSRLKEKID 420

Query: 413 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 472
           ++N T++ELSKEL SVQGQLV ERSRC KLEAQIAELQKMLE+ Q+IE+EVQ+LR+QKS 
Sbjct: 421 DINGTYAELSKELHSVQGQLVVERSRCSKLEAQIAELQKMLETLQSIEDEVQLLRRQKSM 480

Query: 473 FEQEMERATSVQTQGSGGVWRWIAG 497
            E+ ME A + Q QGSGGVWRWIAG
Sbjct: 481 LERNMEVA-AAQRQGSGGVWRWIAG 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465316|ref|XP_004150374.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449523517|ref|XP_004168770.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/511 (66%), Positives = 406/511 (79%), Gaps = 18/511 (3%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           MD  SW   L +D WV LPVSG+RP  RYK        KLYIVGGSRNGR+LSDVQV DL
Sbjct: 1   MDVDSWQWGLAFDQWVALPVSGSRPPARYKHAAAVVDQKLYIVGGSRNGRYLSDVQVLDL 60

Query: 53  RSLAWSNLRLETELDADKTEDSG-LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIV 111
            +L+WS+++L+     + ++ +G L+E LPP S H MVKW  KL++LGG+ K+SSD ++V
Sbjct: 61  SNLSWSSVKLQMNPGVENSDGNGSLVEALPPASGHSMVKWDKKLIVLGGNLKRSSDRILV 120

Query: 112 RFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 171
             IDLET+   VMET+G +PVAR GHS TL GS++++FGGED SRKLLND+H LDLE +T
Sbjct: 121 HCIDLETHTWSVMETTGNIPVARAGHSATLFGSKIMMFGGEDSSRKLLNDIHVLDLEALT 180

Query: 172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 231
           WD VE  Q+PPAPR+DH+AALHA  YL+VFGGCSHS FF DLHVLD  T EWSQP+++GD
Sbjct: 181 WDEVETKQSPPAPRFDHTAALHAEHYLLVFGGCSHSAFFRDLHVLDFHTMEWSQPQLQGD 240

Query: 232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 291
           LVT RAGHAGITIDENWYIVGGGDN NGC ETIVLNM+KL+W  L SVK R PLASEG+S
Sbjct: 241 LVTPRAGHAGITIDENWYIVGGGDNKNGCPETIVLNMSKLSWLALRSVKQREPLASEGIS 300

Query: 292 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYAL 351
           +  A I+ E +LVAFGGYNGKYNNEVFVMR KPRD  RPKIFQSPAAAAAAASVTAAYAL
Sbjct: 301 ISLATIDQEKYLVAFGGYNGKYNNEVFVMRPKPRDSSRPKIFQSPAAAAAAASVTAAYAL 360

Query: 352 AKSEKLDIPKTLSSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRF 407
           AK+EKLD      S   G+ N    + S+ +   ++ AI+E+K  LEL+L+EV++ENS+ 
Sbjct: 361 AKTEKLDF-----SMIEGVSNGRHQNHSQPNGAIELKAIREEKAKLELTLSEVQSENSKL 415

Query: 408 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 467
           +++IDEVNSTH+ELSKEL SVQ QL+AERSRCFKLEAQIAELQKMLES Q+IENE+ +LR
Sbjct: 416 KQEIDEVNSTHAELSKELQSVQSQLIAERSRCFKLEAQIAELQKMLESMQSIENEIHLLR 475

Query: 468 QQKSAFEQEMERATSVQTQGSGGVWRWIAGG 498
           +QKSA E+ ME A++VQ QGSGGVWRWIAGG
Sbjct: 476 EQKSALEKHMEAASTVQRQGSGGVWRWIAGG 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237715|ref|NP_196062.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326940|ref|NP_001031832.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326969|ref|NP_001031833.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|7406446|emb|CAB85548.1| putative protein [Arabidopsis thaliana] gi|53850551|gb|AAU95452.1| At5g04420 [Arabidopsis thaliana] gi|63003778|gb|AAY25418.1| At5g04420 [Arabidopsis thaliana] gi|222424058|dbj|BAH19990.1| AT5G04420 [Arabidopsis thaliana] gi|332003357|gb|AED90740.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003358|gb|AED90741.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003359|gb|AED90742.1| kelch repeat-containing protein [Arabidopsis thaliana]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/504 (65%), Positives = 407/504 (80%), Gaps = 14/504 (2%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           +D G WH  L +D W  LPVSG+R S RYK        KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 53  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 108
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 168
           M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 229 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 288
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 348
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 349 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 408
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 468
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 469 QKSAFEQEMERATSVQTQGSGGVW 492
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583742|ref|XP_002532624.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223527644|gb|EEF29755.1| acyl-CoA binding protein, putative [Ricinus communis]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/451 (74%), Positives = 383/451 (84%), Gaps = 14/451 (3%)

Query: 5   SWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLA 56
           +W  +L Y+ WV +PVSG RPS RYK        KLY+ GGSRNGR+LSDVQVFDLRS  
Sbjct: 14  NWFSQLTYEQWVAIPVSGVRPSARYKHAAAIADEKLYVSGGSRNGRYLSDVQVFDLRSSV 73

Query: 57  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 116
           WS+L+L+T+L ADK E++GL EVLP  SDH MV+W  KLL+LGGH KKSSD   +RFIDL
Sbjct: 74  WSSLKLKTDLHADKVEENGLQEVLPATSDHSMVQWENKLLLLGGHSKKSSD---MRFIDL 130

Query: 117 ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 176
           ET+ CGVMETSGK PVARGGHS TLVGSRLI+FGGED SR+LLND++ LDLE MTWD +E
Sbjct: 131 ETHHCGVMETSGKAPVARGGHSATLVGSRLIVFGGEDGSRRLLNDLYALDLEKMTWDVLE 190

Query: 177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236
            TQTPPAPR+DH+A +HA RYLIVFGGCSHSIFFNDLHVLDLQT EWSQPE +GDLVT R
Sbjct: 191 TTQTPPAPRFDHTATIHAERYLIVFGGCSHSIFFNDLHVLDLQTMEWSQPETRGDLVTPR 250

Query: 237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAI 296
           AGHAGI IDENWYIVGGGDN NGC ET+VLNM+KLAWS LT+VKGR+PLASEGLSVCS +
Sbjct: 251 AGHAGIAIDENWYIVGGGDNKNGCPETLVLNMSKLAWSTLTNVKGRDPLASEGLSVCSTL 310

Query: 297 IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEK 356
           I+GE HLVAFGGYNGKYNNEVF+MRLKPRD+ RPKIFQSPAAAAAAASVTAAYALAKSEK
Sbjct: 311 IDGEKHLVAFGGYNGKYNNEVFIMRLKPRDMLRPKIFQSPAAAAAAASVTAAYALAKSEK 370

Query: 357 LDIPK-TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 415
           LD     L+S+   + +  SE+D+ ++IDAIKEDK+VLE+SL EVR ENSR REKIDEVN
Sbjct: 371 LDFSNINLNSR--EVESHPSEQDITSEIDAIKEDKKVLEMSLAEVRAENSRLREKIDEVN 428

Query: 416 STHSELSKELSSVQGQLVAERSRCFKLEAQI 446
           STH+ELSKEL SVQGQLVAERSRCFKLE  +
Sbjct: 429 STHAELSKELHSVQGQLVAERSRCFKLEKSL 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724206|gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/504 (65%), Positives = 406/504 (80%), Gaps = 14/504 (2%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           +D G WH  L +D W  LPVSG+R S RYK        KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 53  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 108
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 168
           M+VRFIDLET+ CGV++  G VP +R GHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRDGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 229 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 288
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 348
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 349 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 408
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 468
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 469 QKSAFEQEMERATSVQTQGSGGVW 492
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810527|ref|XP_002873147.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318984|gb|EFH49406.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/504 (65%), Positives = 404/504 (80%), Gaps = 14/504 (2%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           +D G WH  L +D W  LPVSG+R S RYK        KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 53  RSLAWSNLRLETELDADKT--EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 108
            SL WS+L+L TE  + +   ED G  L E  P +SDH M+KWG  LL++GGH KKSSD+
Sbjct: 68  TSLTWSSLKLITESSSAENIQEDDGSSLREAFPAISDHRMIKWGNMLLLIGGHSKKSSDN 127

Query: 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 168
           + VRFIDLET+LCGV + SG VP +RGGHS+TLVGSR+++FGGED++R+LLND+H LDLE
Sbjct: 128 ISVRFIDLETHLCGVFDVSGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLDLE 187

Query: 169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDIVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 229 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 288
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 348
           GLSVCSA + GE+ LVAFGGYNGKYNN+++VM LKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIYVMILKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 349 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 408
           YA+AKS+K D P   +    GIG+ L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGIGSSLPERDIRNRIDTIKEEKRSLESSVAETQVENAKLR 427

Query: 409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 468
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 469 QKSAFEQEMERATSVQTQGSGGVW 492
           Q+S  + E E  T VQ QGSGGVW
Sbjct: 488 QRSVSD-EGEDGT-VQRQGSGGVW 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576361|ref|XP_003556301.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/509 (63%), Positives = 404/509 (79%), Gaps = 16/509 (3%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
           M+  +WH EL YD WV + VSGARP+ RYK        KLYI GGSRNGR LSDVQVFDL
Sbjct: 1   MEVNNWHKELKYDEWVPITVSGARPAARYKHAAAVVDEKLYIAGGSRNGRHLSDVQVFDL 60

Query: 53  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 112
           RSL WS+L+L+  +  D  +D    E+LP  S H M++WG KLL+LGG+ ++SS  + VR
Sbjct: 61  RSLTWSSLKLKANVRKD--DDDSSQEILPATSGHNMIRWGEKLLLLGGNSRESSAELTVR 118

Query: 113 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 172
           +ID+ET   GV++TSG VPVAR G S +L GSR+I+FGGE+ SRKLLNDVH LDLE+MTW
Sbjct: 119 YIDIETCQFGVIKTSGDVPVARVGQSASLFGSRVILFGGEEMSRKLLNDVHVLDLESMTW 178

Query: 173 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 232
           + ++ TQTPPAPRYDHSAA+   RYL++FGGCSHSIFFNDLH+LD+QT EWSQP+ +GDL
Sbjct: 179 EMIKTTQTPPAPRYDHSAAIQGERYLLIFGGCSHSIFFNDLHLLDMQTMEWSQPQTQGDL 238

Query: 233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 292
           V+ RAGH GITIDE+W IVGGGDN +GC ET+VL+M+KL WS+LT VK ++PL+SEGLSV
Sbjct: 239 VSPRAGHTGITIDESWLIVGGGDNRSGCPETLVLDMSKLVWSVLTVVKQKDPLSSEGLSV 298

Query: 293 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 352
           CSA I GE +L+AFGGYNG+Y+NEVFVMR K +D  RPKIFQSPAAAAAAASVT+AYAL+
Sbjct: 299 CSATIGGEKYLLAFGGYNGRYSNEVFVMRPKAKDTMRPKIFQSPAAAAAAASVTSAYALS 358

Query: 353 KSEKLDIPK--TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREK 410
           KSEKLD  +   ++SK +  G+   + DV   ++AIKE+KR+LELS+ EVR ENS+   +
Sbjct: 359 KSEKLDFMQLDDINSKLSVNGH--HKDDVVDKVEAIKEEKRLLELSIAEVRAENSKLGGE 416

Query: 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 470
           I+E+N+TH+EL+KEL SVQGQLVAERSRCF LEA+IAELQK+LES Q++E EVQ LR++K
Sbjct: 417 IEEINNTHAELTKELQSVQGQLVAERSRCFNLEAKIAELQKLLESMQSVEEEVQALREKK 476

Query: 471 SAFEQEMERATSVQTQGSGGVWRWIAGGQ 499
           SA +QEME A + +++ SG  WRW  G +
Sbjct: 477 SALDQEMELAATAESKSSG--WRWFGGSE 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449833|ref|NP_001048563.1| Os02g0822800 [Oryza sativa Japonica Group] gi|48716304|dbj|BAD22917.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|55773890|dbj|BAD72475.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|113538094|dbj|BAF10477.1| Os02g0822800 [Oryza sativa Japonica Group] gi|222623936|gb|EEE58068.1| hypothetical protein OsJ_08927 [Oryza sativa Japonica Group]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/499 (52%), Positives = 353/499 (70%), Gaps = 15/499 (3%)

Query: 11  PYDLWVTLPVSGA--RPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 60
           PYD W+    +G   RPS RYK        KLY+VGGSRNGR+LSD+QVFD R+L WS L
Sbjct: 16  PYDQWLPFSPAGGSPRPSARYKHAAEVVREKLYVVGGSRNGRYLSDIQVFDFRTLKWSAL 75

Query: 61  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-SDSMIVRFIDLETN 119
               +      E++      P ++ H +V W   ++++ G+ + S S+ + V  I++ETN
Sbjct: 76  SAARDSSQLNIENNTTDPSFPALAGHSLVNWKKYIVVVAGNTRTSTSNKVSVWLINVETN 135

Query: 120 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 179
               ++T GKVP++RGG SV+LVGSRLI+FGGED  R+LLND+H LDLETM W+ V+  +
Sbjct: 136 SWSSVDTYGKVPISRGGQSVSLVGSRLIMFGGEDNKRRLLNDLHILDLETMMWEEVKTGK 195

Query: 180 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 239
             PAPRYDHSAA++A++YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +  R+GH
Sbjct: 196 GGPAPRYDHSAAVYADQYLLIFGGSSHSTCFSDIYLLDLQTMEWSQPDTQGAHINPRSGH 255

Query: 240 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 299
           AG  IDENWYIVGGGDN +G  +TI++N +K  WS++TSV  R+PLA EGL++CS  ++G
Sbjct: 256 AGTMIDENWYIVGGGDNASGSTDTIMMNASKFVWSVVTSVPARDPLACEGLTLCSTTVDG 315

Query: 300 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKL-D 358
           E  LVAFGGYNG+YNNE+FVM+LKPR++ +P++ QSPAAAAAAASVTAAYA+   EK  D
Sbjct: 316 EKFLVAFGGYNGQYNNEIFVMKLKPRNLVQPRLLQSPAAAAAAASVTAAYAVITDEKTRD 375

Query: 359 IPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH 418
           I  T       +    S K + T++DA+  +K  LE  L EVR ENS+ ++++D V  +H
Sbjct: 376 IVATDDLDVKRVQPSGSSKQITTELDALNGEKGKLESRLAEVRDENSKLKDRLDMVKLSH 435

Query: 419 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 478
            EL+KEL SVQ QL AE SRC KLE+QIA   K LES+ ++ENE+++LRQQ S  EQ M 
Sbjct: 436 GELTKELKSVQHQLAAEGSRCQKLESQIAAAHKRLESTDSLENELEVLRQQISQVEQTM- 494

Query: 479 RATSVQTQGSGGVWRWIAG 497
             T+ Q Q SGGVW+W+AG
Sbjct: 495 --TTAQRQKSGGVWKWVAG 511

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137701|ref|XP_003570438.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Brachypodium distachyon]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/503 (52%), Positives = 351/503 (69%), Gaps = 21/503 (4%)

Query: 11  PYDLWVTL-PVSGA-RPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 60
           PYD WV L P  G+ RP  RYK        KLY+VGGSRNGR LSDVQVFD R+  WS  
Sbjct: 18  PYDSWVLLRPADGSSRPPARYKHAAEVIQDKLYVVGGSRNGRSLSDVQVFDFRTFKWSVS 77

Query: 61  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFIDLETN 119
               + +    E++   +  P ++ H +VKW   L+++ G+ + SS + + V  ID+ETN
Sbjct: 78  SPSRDSNQLNLENNAGNQPFPALAGHSLVKWKNNLVVVAGNSRASSSNKVSVWLIDVETN 137

Query: 120 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 179
               ++T GKVPVAR G SV+L+GS+LI+FGGED  R+LL+D+H LDLETM W+ ++  +
Sbjct: 138 SWSAVDTYGKVPVARSGQSVSLIGSQLIMFGGEDNKRRLLSDLHILDLETMIWEEIKTEK 197

Query: 180 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 239
             PAPRYDHSAA++A+ YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +T R+GH
Sbjct: 198 GGPAPRYDHSAAVYADHYLLIFGGSSHSTCFSDMYLLDLQTLEWSQPDTQGANITPRSGH 257

Query: 240 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 299
           AG  IDENWYIVGGGDN +G  +TIV+N +K  WS++TSV  R+ LA EGL++CS  I+G
Sbjct: 258 AGTMIDENWYIVGGGDNASGSTDTIVMNASKFVWSVVTSVSIRDSLACEGLTLCSTTIDG 317

Query: 300 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA-----KS 354
           E  L+AFGGYNGKYNNEVFVM+ KPR+  +P++ QSPAAAAAAASVTAAYA+      K+
Sbjct: 318 EKFLIAFGGYNGKYNNEVFVMKPKPRNFVQPRLLQSPAAAAAAASVTAAYAVVTATDEKT 377

Query: 355 EKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEV 414
             +     L  K A  G+  S K    +IDA+  +K  LE  L EVR ENS+ ++K+D V
Sbjct: 378 RDIVAADDLDVKRAEPGS--SSKQTVAEIDALNWEKGKLESQLAEVRAENSKLKDKLDTV 435

Query: 415 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 474
             ++SEL+KEL SV+ QL AE SRC KLE+QIA   K L+S+ ++ENE+++L+QQ S  E
Sbjct: 436 KLSYSELTKELRSVENQLAAEGSRCQKLESQIAATNKRLQSADSLENELEVLQQQISQVE 495

Query: 475 QEMERATSVQTQGSGGVWRWIAG 497
           Q M   T+ Q + SGGVW+W+AG
Sbjct: 496 QTM---TTAQRRKSGGVWKWVAG 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
TAIR|locus:2184352	514	AT5G04420 [Arabidopsis thalian	0.981	0.953	0.636	6.9e-173
TAIR|locus:2143676	648	ACBP5 "acyl-CoA binding protei	0.925	0.712	0.426	4.9e-101
TAIR|locus:2183008	708	AT5G18590 [Arabidopsis thalian	0.595	0.419	0.355	1.6e-57
DICTYBASE|DDB_G0280765	777	DDB_G0280765 "Kelch repeat-con	0.440	0.283	0.316	1e-26
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.486	0.257	0.316	6.2e-22
UNIPROTKB|F1SKQ3	370	RABEPK "Uncharacterized protei	0.464	0.627	0.281	3.5e-21
MGI|MGI:2139530	380	Rabepk "Rab9 effector protein	0.496	0.652	0.282	2.9e-20
RGD|1310612	372	Rabepk "Rab9 effector protein	0.496	0.666	0.285	3e-20
UNIPROTKB|Q5EA50	372	RABEPK "Rab9 effector protein	0.464	0.623	0.273	7.5e-20
POMBASE|SPCC1223.06	1147	tea1 "cell end marker Tea1" [S	0.488	0.212	0.276	2e-19

TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
 Identities = 321/504 (63%), Positives = 391/504 (77%)

Query:     1 MDSGSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDL 52
             +D G WH  L +D W  LPVSG+R S RYK        KLYIVGGSRNGR+LSDVQVFDL
Sbjct:     8 IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query:    53 RSLAWSNLRLETELD-ADKT-EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 108
             RSL WS+L+L+TE   AD   ED G  L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct:    68 RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query:   109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 168
             M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct:   128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query:   169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228
             TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct:   188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query:   229 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 288
             +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct:   248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query:   289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXX 348
             GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SP            
Sbjct:   308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query:   349 XXXXKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 408
                 KS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct:   368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query:   409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 468
             EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct:   428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query:   469 QKSAFEQEMERATSVQTQGSGGVW 492
             Q+SA ++E E  T VQ QGS GVW
Sbjct:   488 QRSASDEE-EDGT-VQRQGSAGVW 509

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 209/490 (42%), Positives = 302/490 (61%)

Query:    12 YDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 63
             Y+ W     SG  P  RY+        K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct:   169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query:    64 TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 123
             T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct:   227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query:   124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 183
             ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct:   286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query:   184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 243
             PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct:   346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query:   244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 303
             I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct:   406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query:   304 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXXXXXXKSEKLDIPKTL 363
             VAFGGYNG YNNEV V++   +   + KI  +                      DI   +
Sbjct:   466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATTR------DIESEI 519

Query:   364 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 423
               K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct:   520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query:   424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS-AFEQEMERATS 482
             EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q++ A EQ       
Sbjct:   570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQRAVASEQAATMNAK 629

Query:   483 VQTQGSGGVW 492
              Q+ G    W
Sbjct:   630 RQSSGGVWGW 639

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006869 "lipid transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009416 "response to light stimulus" evidence=TAS

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 111/312 (35%), Positives = 166/312 (53%)

Query:    15 WVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL 66
             W+ L V+G +P+PR+         K+ +VGG      L DVQV +  S  WS    +  L
Sbjct:    66 WMVLSVNGEKPAPRFNHAAATIGNKMIVVGGESGSGLLDDVQVLNFDSCTWSTASSKVYL 125

Query:    67 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET 126
                    S L  ++P    HC+V WG K+L++GG    SSD + V   D ++    +M+ 
Sbjct:   126 SP-----SSLPLMIPAWKGHCLVSWGKKVLLVGGKTDPSSDRVSVWAFDTDSECWSLMDA 180

Query:   127 SGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 186
              G +PV+R GH+V    S LI+FGGED  ++ LND+H  DL++ TW  +  T T P  R 
Sbjct:   181 KGDLPVSRSGHTVVRASSVLILFGGEDSKKRKLNDLHMFDLKSSTWLPLNCTGTRPCARS 240

Query:   187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 246
              H A L  ++ L VFGG   +   NDL+ LD +T  WS+ +I+G   + RAG  G+    
Sbjct:   241 HHVATLFDDKILFVFGGSGKNKTLNDLYSLDFETMVWSRIKIRGFHPSPRAGSCGVLCGT 300

Query:   247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS-EGLSVCSAIIEGEHHLVA 305
              WYI GGG       ET+V ++ K+ WS+  S+  ++ + S +G S+     + +  LVA
Sbjct:   301 KWYITGGGSRKKRHAETLVFDILKVEWSV-ASISSQSSVTSNKGFSLVLLQHKDKDFLVA 359

Query:   306 FGGYNGKYNNEV 317
             FGG     +N+V
Sbjct:   360 FGGTKKDPSNQV 371

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

DICTYBASE|DDB_G0280765 DDB_G0280765 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 305 (112.4 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
 Identities = 75/237 (31%), Positives = 119/237 (50%)

Query:    27 PRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH 86
             P  +++ I GG    ++L+D+   +LR+++WS    E     D         V PP++  
Sbjct:    97 PNNQRVMIFGGKSGKKYLNDLFSLNLRTMSWSTFHFEKSTLPDSRAGHTSTYV-PPIN-- 153

Query:    87 CMVKWGTKLLILGG-HYKKSSDSMIVRFIDLETNLCGVM-----ETSGKVPVARGGHSVT 140
               +    ++++ GG H  K  +S  +  +DL  +  G +     +  GK P  R GH+  
Sbjct:   154 --INGSLRMVVFGGSHSDKYLNSCFI--LDLPKSQAGTIKWIKPQIKGKAPSQRSGHTAD 209

Query:   141 LVGSR--LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYL 198
              +  R  ++IFGG D  RK  ND+H L++  M+W AV+   T P  R  H++ L   RYL
Sbjct:   210 YLKDRNSILIFGGFD-GRKSFNDLHLLNMTDMSWTAVKTNGTTPTTRNGHTSVLVGGRYL 268

Query:   199 IVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIKGDLVTGRAGHAGITIDENWYIVGGG 254
             + +GGCS S   ND+ +LD  +  W SQP I G ++  R  H+   +D    IV GG
Sbjct:   269 VFYGGCSESNVSNDIQILDTDSFTWLSQPMITGLILFPRFNHSSNLLDSGEMIVFGG 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 280 (103.6 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
 Identities = 81/256 (31%), Positives = 116/256 (45%)

Query:    15 WVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 74
             W  +   G  PS RY    ++  S++  +    Q+      A S    +  +    +  S
Sbjct:    55 WSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRS 114

Query:    75 GLLEVLPPMS-----DHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSG 128
              + + +   S      H  V +   L++ GGH   KS     V    LE+N        G
Sbjct:   115 FIWKQVTTKSIEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGG 174

Query:   129 KVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187
              +P AR  HS   V + ++ IFGG D  +K  ND+++LDLET  W  VE   TPP PR  
Sbjct:   175 VIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSG 233

Query:   188 HSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEIKG-DLVTGRAGHAGI 242
             HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP   G ++   R  H   
Sbjct:   234 HSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTTN 293

Query:   243 TIDENWYIVGGGDNNN 258
              I    YI  G  + N
Sbjct:   294 FIGGRVYIYAGTGSGN 309

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 3.5e-21, P = 3.5e-21
 Identities = 70/249 (28%), Positives = 118/249 (47%)

Query:    31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK 90
             K++IVGG+   R  SDV   DL +  W     E  L   + E +  +   P  + H +  
Sbjct:    49 KVFIVGGANPNRSFSDVHTMDLGTHQWDLTTSEGLLP--RYEHASFV---PSCAPHSI-- 101

Query:    91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIF 149
             W     + GG   +S +   ++ ++ ET    + E +   P  R  H S +++G++L +F
Sbjct:   102 W-----VFGGA-DQSGNRNCLQVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVF 155

Query:   150 GGEDRSRKLLNDV--HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 207
             GG +R  + + DV  H  D  T+TW   E    PP+PR+ H   + A   L + GG +  
Sbjct:   156 GGGERGAQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGH-VMVAAGTKLFIHGGLAGD 214

Query:   208 IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 267
              F++DLH +D+   +W +    G   TG A H+ +T+ ++ YI GG             +
Sbjct:   215 KFYDDLHCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGGMTPTGALDTMYQYH 274

Query:   268 MTKLAWSIL 276
             + K  W++L
Sbjct:   275 IEKQHWTLL 283

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 79/280 (28%), Positives = 120/280 (42%)

Query:    15 WVTLPVSGARPSPR------Y---------KKLYIVGGSRNGRFLSDVQVFDLRSLAWSN 59
             W TL   G RP PR      Y          K++IVGG+   +  SDV   DL +  W  
Sbjct:    26 WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query:    60 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 119
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ +  E  
Sbjct:    86 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMSPEDR 132

Query:   120 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 176
                  E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query:   177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236
                +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct:   193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query:   237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 276
             A HA + +  + Y+ GG             +  K  W++L
Sbjct:   252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1310612 Rabepk "Rab9 effector protein with kelch motifs" [Rattus norvegicus (taxid:10116)]

 Score = 258 (95.9 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 80/280 (28%), Positives = 120/280 (42%)

Query:    15 WVTLPVSGARPSPR------Y---------KKLYIVGGSRNGRFLSDVQVFDLRSLAWSN 59
             W TL   G +P PR      Y          K++IVGG+   +  SDV   DL +  W  
Sbjct:    18 WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query:    60 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 119
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ ++ E  
Sbjct:    78 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMNPEAR 124

Query:   120 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 176
                  E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query:   177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236
                +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct:   185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query:   237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 276
             A HA + +  + Y+ GG             +  K  W+IL
Sbjct:   244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.5e-20, P = 7.5e-20
 Identities = 68/249 (27%), Positives = 114/249 (45%)

Query:    31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK 90
             K++IVGG+   R  SDV   DL +  W     E  L   + E +  +   P  + H +  
Sbjct:    49 KVFIVGGADPNRSFSDVHTIDLGTHQWDLATSEGLLP--RYEHTSFI---PSCTPHSI-- 101

Query:    91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIF 149
             W     + GG   +S +   ++ ++ +T      E +G  P  R  H S   +G +L +F
Sbjct:   102 W-----VFGGA-DQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVF 155

Query:   150 GGEDRSRKLLNDV--HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 207
             GG +R  + + DV  H  D  T+TW   E    PP+PR+ H   + A   L + GG +  
Sbjct:   156 GGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGD 214

Query:   208 IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 267
              F++DLH +D+   +W +    G   TG A H+ + + ++ Y+ GG             +
Sbjct:   215 NFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYH 274

Query:   268 MTKLAWSIL 276
             + K  W++L
Sbjct:   275 IEKQHWTLL 283

GO:0010008 "endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 245 (91.3 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 73/264 (27%), Positives = 117/264 (44%)

Query:    75 GLLEVLPPMS--DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 132
             G   VLP  S   H   + G ++ I GG    S     +  ++L T+    + + G+ P 
Sbjct:    73 GSSNVLPRYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPS 132

Query:   133 ARGGHSVTLVGSRLIIFGG---EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 189
              R GH+  L+G+  I+FGG    D + +  N ++ L+  ++ W     +   P+ RY H+
Sbjct:   133 PRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHT 192

Query:   190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQT-----NEWSQPEIKGDLVTGRAGHAGITI 244
              +   ++ + +FGG     +FNDL   DL       + W    +  D    RAGH   T 
Sbjct:   193 ISCLGSK-ICLFGGRLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTF 251

Query:   245 DENWYIVGGGDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHL 303
              +  YI GG D  N   +    +  + AWS + T     NP A    SV    +EG   L
Sbjct:   252 SDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASV----VEGI--L 305

Query:   304 VAFGGY--NGKYNNEVFVMRLKPR 325
               FGG   +G + N+++  RL  +
Sbjct:   306 YVFGGRASDGTFLNDLYAFRLSSK 329

GO:0005515 "protein binding" evidence=IPI

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IC

GO:0010570 "regulation of filamentous growth" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0031500 "Tea1 cell-end complex" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0035838 "growing cell tip" evidence=IDA

GO:0035839 "non-growing cell tip" evidence=IDA

GO:0051285 "cell cortex of cell tip" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IGI

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

GO:2000771 "positive regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	2e-10
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	6e-10
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	1e-08
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	3e-08
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	5e-07
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	6e-07
pfam13964	50	pfam13964, Kelch_6, Kelch motif	2e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-06
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-05
pfam01344	46	pfam01344, Kelch_1, Kelch motif	1e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	3e-05
pfam07646	48	pfam07646, Kelch_2, Kelch motif	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
pfam14073	178	pfam14073, Cep57_CLD, Centrosome localisation doma	8e-05
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	1e-04
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	3e-04
pfam07646	48	pfam07646, Kelch_2, Kelch motif	6e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	6e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	8e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	0.001
pfam13964	50	pfam13964, Kelch_6, Kelch motif	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	0.002
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.003
smart00612	47	smart00612, Kelch, Kelch domain	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
smart00612	47	smart00612, Kelch, Kelch domain	0.004
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	0.004

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 86  HCMVKWGTKLLILGGHYKKSS--DSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLV 142
           H + + G K+   GG +  +   D  +  F DLET    +   +G VP ++  G  +  +
Sbjct: 169 HGIAQVGNKIYSFGGEFTPNQPIDKHLYVF-DLETRTWSISPATGDVPHLSCLGVRMVSI 227

Query: 143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVF 201
           GS L +FGG D SR+  N  +  D  T  W  +   +  P PR  HS AA   N Y  VF
Sbjct: 228 GSTLYVFGGRDASRQY-NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY--VF 284

Query: 202 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN--WYIVGGGDNNNG 259
           GG S +     L   ++   +W      GD  + R G AG+ + +   W + G     NG
Sbjct: 285 GGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYG----FNG 339

Query: 260 CQ 261
           C+
Sbjct: 340 CE 341

Length = 470

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 133 ARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 184
            R  H+ T +G  RL +FGGE+    +L+DV   DL T TW     T+ P  P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW-----TRLPSLP 48

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 193
           G ++ +FGG       LND+   DL+T TW   E     P PR  H+A + 
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 184 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQ 225
           PR  H++    +  L +FGG +      +D+ V DL TN W++
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTR 43

Length = 49

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 123 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN-DVHFLDLETMTWDAVEVTQTP 181
           V +  GK P  R  H + +VG +L  FGGE +  + ++ D++  D  T TW         
Sbjct: 12  VEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71

Query: 182 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG---RAG 238
           P         +     L +FGG      F+D +  D   NEW+    K D   G   R  
Sbjct: 72  PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTF 130

Query: 239 HAGITIDENWYIVGGGDNNNGCQET 263
           H+ +  DEN   V GG +  G  +T
Sbjct: 131 HS-MASDENHVYVFGGVSKGGLMKT 154

Length = 341

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND-VHFLDLETMTWDAVEVTQTPP 182
           +E  G+ P  R  H +  VG+++  FGGE    + ++  ++  DLET TW     T   P
Sbjct: 156 VEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215

Query: 183 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHA 240
                    +     L VFGG   S  +N  +  D  TNEW    P  +G   T R+ H+
Sbjct: 216 HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFHS 273

Query: 241 GITIDENWYIVGG 253
               +EN Y+ GG
Sbjct: 274 MAADEENVYVFGG 286

Length = 470

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 195 NRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 244
              + VFGG        NDL V DL TN W +    GDL   RAGHA   I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 136 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 185
           GHS   VG ++ +FGG     K  N V   D ET +W+ +      P PR
Sbjct: 4   GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLP---PLPTPR 50

Length = 50

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456
           L E++ E +  +E++ E+    +EL +E   ++ +L    +   +L+ ++A ++++  ++
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127

Query: 457 QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGV-WRW-IAGG 498
             ++ E + LR++ +  +QE E   +   +       RW + GG
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRRWFLYGG 171

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 181 PPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN 221
            P PR +H A +     + ++GG +       +D++VL L   
Sbjct: 1   LPVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPGF 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 225
           PR      +     + V GG       + + V D +TN WS+
Sbjct: 1   PRSGAGVVVL-GGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 130 VPVARGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLET 169
           +PV R  H   +VG  + ++GG    + +  +DV+ L L  
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 134 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTP 181
           R  H+  +VG +L + GG         +D+  LD ET  W   E+   P
Sbjct: 2   RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWT--ELPALP 48

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 20/102 (19%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
           +++  ++++++E    L+  + E+  +    +E+++E+     E  + L +++ +L +  
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 437 SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 478
            R  +LE +I EL+   E  + +E ++  L ++    E+E+E
Sbjct: 821 QRRERLEQEIEELE---EEIEELEEKLDELEEELEELEKELE 859

Length = 1163

>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 374 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 433
           L EK  R +++  + +  +  LS  E         E+  E N   +EL+K+   +  QL 
Sbjct: 9   LQEKIRRLELERTQAEDNLQTLS-REATHYKKVLEEEEQERNLAANELTKQNKDLTSQLS 67

Query: 434 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 487
           +  SRC  LE Q+  +++M+E+++       +L QQ S   ++      VQ Q 
Sbjct: 68  SAESRCSLLEKQLEYMRRMVENAEK--ERTAVLEQQVSLQREKEHDQMDVQAQL 119

The CLD or centrosome localisation domain of Cep57 is found at the N-terminus, and lies approximately between residues 58 and 239. This region lies within the first alpha-helical coiled-coil segment of Cep57, and localises to the centrosome internally to gamma-tubulin, suggesting that it is either on both centrioles or on a centromatrix component. This N-terminal region can also multimerise with the N-terminus of other Cep57 molecules. The C-terminal part, Family Cep57_MT_bd, pfam06657, is the microtubule-binding region of Cep57. Length = 178

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 57/234 (24%)

Query: 132 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 186
             R       +  +L +FGG      + S ++ +DV+  D +  +W  ++     P    
Sbjct: 52  GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLL 109

Query: 187 DHSAALHANRYLIVFGGCSHSIF---FNDL-----------------------------H 214
             S     N      GG + +IF   F DL                             +
Sbjct: 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169

Query: 215 VL--DLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ--ETIVLNMT- 269
           VL  D  TN+W        L  G AG + I    N  ++  G+   G +  E      T 
Sbjct: 170 VLSYDPSTNQWRNLGENPFL--GTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226

Query: 270 -KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY---------NGKY 313
            KL W+ L  +      + EGL+   A I     LVA G           NGK 
Sbjct: 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKL 280

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 43/256 (16%)

Query: 30  KKLYIVGGS-RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM 88
             +Y +GG  +N   ++ V  +D ++ +W+ +    EL   +                  
Sbjct: 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV---PELIYPRKNPGV------------- 338

Query: 89  VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII 148
             +  ++ ++GG Y   S +  V       +          +   R    V  V + + +
Sbjct: 339 TVFNNRIYVIGGIYNSISLN-TVESWKPGES---KWREEPPLIFPRYNPCVVNVNNLIYV 394

Query: 149 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS- 207
            GG  ++ +LL  V    L T  W         P   Y   A  H    + V GG S+  
Sbjct: 395 IGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDG-KIYVIGGISYID 450

Query: 208 --IFFNDLHVLDLQTNEWS------QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG 259
               +N +   +  TN+W+       P I   L            +   Y+VGG      
Sbjct: 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI---------FNNKIYVVGGDKYEYY 501

Query: 260 CQETIVLNMTKLAWSI 275
             E  V +     W++
Sbjct: 502 INEIEVYDDKTNTWTL 517

Length = 534

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 434
           +   ++ +I+ ++E ++ L+  L E+  E      ++D +      L +    ++ ++  
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 435 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 480
                 +LE ++ EL++ LE    +E E++ L+++    E E E  
Sbjct: 833 LEEEIEELEEKLDELEEELEE---LEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 434
             K+   +++ +  + + LE  L E+R E S   E+I+E+      L+ E+S ++ Q   
Sbjct: 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

Query: 435 ERSR-------CFKLEAQIAELQKML----ESSQTIENEVQILRQQKSAFEQEMERATSV 483
            R R         +LEAQ+ EL+  L    E    +E +++ L+++  + E E+E   + 
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 484 Q 484
            
Sbjct: 367 L 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 60
          K+Y++GG   G+ LS V+V+D  +  WS L
Sbjct: 13 KIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 184 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 224
           PRY H++ +   + L V GG +    +  +DL VLD +TN W+
Sbjct: 1   PRYPHASVVVGGK-LYVVGGSTGLGDLSSSDLWVLDPETNVWT 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 359 IPKTLS---SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 415
           I K L    ++   +   L   ++   ++ ++     LE  + E+R    R  EK+  V 
Sbjct: 29  IRKALKKAKAELEALNKALEALEIE--LEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86

Query: 416 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--------IENEVQILR 467
                  +EL ++  ++   + R   LE ++AEL + +E  +         +E   + L 
Sbjct: 87  D-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141

Query: 468 QQKSAFEQEME 478
           + ++  E+E+ 
Sbjct: 142 EAEARLEEEVA 152

Length = 239

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 172
            R G  V ++G ++ + GG D  +  L+ V   D ET TW
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQ-SLSSVEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 376 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 435
            +++R +++ ++E+   L+  + E+  E S  RE+++E+ +   EL + L  ++ ++ A 
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 436 RSRCFKLEAQIAEL-QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 486
           +    + E  + EL Q + E  +  E   + L       E+  E       +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Length = 1163

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 52/233 (22%), Positives = 74/233 (31%), Gaps = 70/233 (30%)

Query: 133 ARGGHSVTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--Y 186
           AR      ++G +L +FGG       S ++ ND +  D  T +W  ++      +P    
Sbjct: 82  ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR----SPTGLV 137

Query: 187 DHSAALHANRYLIVFGGCSHSIF---FNDL---------------HVLDL---------- 218
             S        +  FGG + +IF   F D+               H  D           
Sbjct: 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197

Query: 219 ------QTNEWSQPEIKGDL-VTGRAGHAGITIDEN--WYIVG---GGDNNNGCQETIVL 266
                  TN+W      G+    G AG A + I  N    I G    G      ++    
Sbjct: 198 VLSYDPSTNQWR---NLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFG 253

Query: 267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 319
               L W                LS   A I      VA G ++GK N EV V
Sbjct: 254 GD-NLKWLK--------------LSDLPAPIGSNKEGVA-GAFSGKSNGEVLV 290

Length = 381

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 103 KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGE---DRSR--- 156
           K   +S  V+F D  +     +ET+G  P AR   +  +VG  +IIFGGE   D      
Sbjct: 211 KSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLG 270

Query: 157 --KLLNDVHFLDLETMTWDAVEVTQTPPAPR----YDHSAALHANRYLIVFGG 203
              L N+ + LD ET+ W+ +     P  PR    Y  +A ++    L++ GG
Sbjct: 271 PGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYT-TATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 184 PRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQ 225
           PR  HSA       + VFGG  + S   N + V D +T  W +
Sbjct: 1   PRTGHSAVSVGG-KIYVFGGYSNGSKASNKVLVYDPETGSWEK 42

Length = 50

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 356 KLDIPKTLSSKFAGIGNDLSEKDVRTD--IDAIKEDKRVLELSLTEV----------RTE 403
           + +I K L+     +  ++ E+  R D   +   E K  LE    E+          R E
Sbjct: 328 EAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL-------EAQIAELQKMLESS 456
              +REK++++    +EL +EL  +Q +L         L       EA+I EL++  E  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 457 Q----TIENEVQILRQQKSAFEQEMERATS 482
                  E +++ L    S +EQE+     
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 60/244 (24%), Positives = 87/244 (35%), Gaps = 54/244 (22%)

Query: 31  KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK 90
           KLYI GG    R  SD   +D     W+ L   T+LD +   ++           H M  
Sbjct: 87  KLYIFGGRDEKREFSDFYSYDTVKNEWTFL---TKLDEEGGPEARTF--------HSMAS 135

Query: 91  WGTKLLILGGHYKKSSDSMIVRFIDLET-NLCG----VMETSGKVPVARGGHSVTLVGSR 145
               + + GG  K        RF  +E  N+       +   G+    RGG    +V  +
Sbjct: 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK 195

Query: 146 L---------IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-- 194
           +         I+ GG+       N V F D  +  W  VE T   P+ R   S   HA  
Sbjct: 196 IWVVYGFATSILPGGKSDYES--NAVQFFDPASGKWTEVETTGAKPSAR---SVFAHAVV 250

Query: 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN---WYIV 251
            +Y+I+FGG                   W  P++KG L  G   + G  +D     W  +
Sbjct: 251 GKYIIIFGG-----------------EVW--PDLKGHLGPGTLSNEGYALDTETLVWEKL 291

Query: 252 GGGD 255
           G   
Sbjct: 292 GECG 295

Length = 341

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 160 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC------SHSIFFNDL 213
              + LDL+  +    ++   P  PR    AA      L VFGG            F+D+
Sbjct: 29  TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG-KLYVFGGIGKANSEGSPQVFDDV 87

Query: 214 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 258
           +  D + N W +  +      G  G +G ++        GG N N
Sbjct: 88  YRYDPKKNSWQK--LDTRSPVGLLGASGFSLHNGQAYFTGGVNKN 130

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 380 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 439
            ++++A+  ++  LE +L  +R+E     E++ E+ S  SEL +EL  ++ +L     R 
Sbjct: 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

Query: 440 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 476
             LE +I  LQ+ L    ++  E     + K   ++E
Sbjct: 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 348 AYALAKSEKLDIPKTLSSK---FAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 404
           A   AK+E   + K L +       +  +     + ++I  I+E  +  E  L+ V+ E 
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDL--ENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89

Query: 405 SR---------FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455
                       +E+I+ +    +EL +E+  ++ ++   + R  +LE  +AE +     
Sbjct: 90  ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE----- 144

Query: 456 SQTIENEVQILRQQKSAFEQEMERATS 482
              +E EV  +R++      + E    
Sbjct: 145 -ARLEEEVAEIREEGQELSSKREELKE 170

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 369 GIGNDLSEKD----VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424
           GI    SE      +R  ++ +K +   L+  L  +        +++ + +    E+ KE
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724

Query: 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEME 478
           +  ++ +    + R  +LE  ++ L++ +E      + +E  ++ L +     E+ + 
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 165 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------IFFNDLHVLDL 218
           LDL   +    ++   P  PR + + A   +  L VFGG   +        F+D++  D 
Sbjct: 55  LDLNAPSKGWTKIAAFPGGPR-EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113

Query: 219 QTNEWSQPEIKGDLVT----GRAGHAGITIDENW-YIVGG 253
           +TN W +      L T    G AGH  +++     YI GG
Sbjct: 114 KTNSWQK------LDTRSPVGLAGHVAVSLHNGKAYITGG 147

Length = 376

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 28/114 (24%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
           K++R +++ ++E+   LE  L E++ E     ++I+E+ S   EL +EL  +Q +L+  +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 437 SRCFKLEAQIAELQKMLESS----QTIENEVQILRQQKSAFEQEMERATSVQTQ 486
               +LE +I+ L++ LE      + +E  ++ L+++  A ++E+E   ++  +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 19/116 (16%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 365 SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424
           +K + +      K++  ++  ++     LE  L  ++ E     + ++E+     EL ++
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 480
           L  ++ +L A      +L++++ EL          E E++ L ++    ++ +E  
Sbjct: 718 LEELKRELAALEEELEQLQSRLEEL----------EEELEELEEELEELQERLEEL 763

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 363 LSSKFAGIGNDLSE-KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 421
           LSS    I N  SE K++   I+ ++ED   LE +L ++  E      +I E+ +  S+L
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKL 803

Query: 422 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 478
            +E+S ++ +L        KL     E + + +  Q ++ +   L++Q  + E+E+E
Sbjct: 804 EEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 132 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 186
             R       +  +L +FGG      + S ++ +DV+  D +T +W   ++    P    
Sbjct: 73  GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW--QKLDTRSPVGLA 130

Query: 187 DHSAALHANRYLIVFGGCSHSIF---FNDLH 214
            H A    N    + GG + +IF   F DL 
Sbjct: 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161

Length = 376

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 198 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 246
           + V GG         + V D +TN+W+       + T R+GH    I+ 
Sbjct: 2   IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 361 KTLSSKFAGIGNDLSE-----KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 415
             L ++   +  +L       + +   ++ ++     LE  L E++ E +   E+++++ 
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 416 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQ 475
           S   EL +EL  ++ +L   + R  +LE ++  L++ L     ++ E++ L +++ A ++
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAK---LKEEIEELEEKRQALQE 793

Query: 476 EME 478
           E+E
Sbjct: 794 ELE 796

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 22/106 (20%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
           +++   ++ +K +   LE  L ++++      E+++E+     EL + L  ++ +L +  
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 437 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEME 478
               KL+ +I EL++  ++ Q     +E E++   ++  A E+E+E
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Length = 1163

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 60
          K+Y+VGG   G+ L  V+V+D  +  W+ L
Sbjct: 1  KIYVVGGFDGGQRLKSVEVYDPETNKWTPL 30

Length = 47

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 376 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL---SKELSSV-QGQ 431
           ++ +  +++ +KED ++L   L  + +   + R++ D +     +L     EL      +
Sbjct: 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTE 205

Query: 432 LVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEMERATSV 483
           L   + +  KL  +I    K LE      Q +E++++ L  +KS    E+  A   
Sbjct: 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.98
PHA02790	480	Kelch-like protein; Provisional	99.97
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.97
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.79
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.73
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.64
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.62
PLN02772	398	guanylate kinase	99.22
PF13964	50	Kelch_6: Kelch motif	99.2
PF13964	50	Kelch_6: Kelch motif	99.14
PLN02772	398	guanylate kinase	99.02
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.99
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.94
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.92
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.91
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.88
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.87
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.82
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.8
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.79
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.78
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.72
PF13854	42	Kelch_5: Kelch motif	98.67
PF13854	42	Kelch_5: Kelch motif	98.66
smart00612	47	Kelch Kelch domain.	98.57
smart00612	47	Kelch Kelch domain.	98.47
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.42
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.39
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.04
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.98
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.97
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.97
KOG2055	514	consensus WD40 repeat protein [General function pr	96.93
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	96.91
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.82
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.54
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.44
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.36
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.27
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.14
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.95
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.95
PRK10361	475	DNA recombination protein RmuC; Provisional	95.94
smart00284	255	OLF Olfactomedin-like domains.	95.94
PRK04792	448	tolB translocation protein TolB; Provisional	95.93
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.86
PRK04043	419	tolB translocation protein TolB; Provisional	95.84
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	95.84
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.8
KOG2055	514	consensus WD40 repeat protein [General function pr	95.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.59
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.58
PRK00178	430	tolB translocation protein TolB; Provisional	95.58
COG2433	652	Uncharacterized conserved protein [Function unknow	95.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.52
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.52
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.48
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.44
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	95.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.4
COG2433	652	Uncharacterized conserved protein [Function unknow	95.37
PRK05137	435	tolB translocation protein TolB; Provisional	95.33
PTZ00421	493	coronin; Provisional	95.27
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.17
COG4946	668	Uncharacterized protein related to the periplasmic	95.12
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	95.11
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.1
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.07
PRK09039	343	hypothetical protein; Validated	94.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.93
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.87
PRK04922	433	tolB translocation protein TolB; Provisional	94.85
COG4372	499	Uncharacterized protein conserved in bacteria with	94.81
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.78
PRK04792	448	tolB translocation protein TolB; Provisional	94.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.68
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.68
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.65
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.61
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.53
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.39
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.3
PRK04922	433	tolB translocation protein TolB; Provisional	94.29
PRK05137	435	tolB translocation protein TolB; Provisional	94.25
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.21
PRK10884	206	SH3 domain-containing protein; Provisional	94.1
PRK09039	343	hypothetical protein; Validated	94.09
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.07
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	93.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.95
PRK00178	430	tolB translocation protein TolB; Provisional	93.82
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.76
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.75
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.67
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.59
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.59
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.51
KOG0646	476	consensus WD40 repeat protein [General function pr	93.46
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.45
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	93.45
PRK03629	429	tolB translocation protein TolB; Provisional	93.38
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	93.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.35
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.32
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.3
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.24
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.2
PRK11028	330	6-phosphogluconolactonase; Provisional	93.04
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.99
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	92.95
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	92.92
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.87
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	92.86
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.86
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.82
PTZ00420	568	coronin; Provisional	92.77
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	92.63
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.58
KOG2321	703	consensus WD40 repeat protein [General function pr	92.55
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	92.55
KOG0971	1243	consensus Microtubule-associated protein dynactin	92.5
PRK03629	429	tolB translocation protein TolB; Provisional	92.42
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	92.42
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.28
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	92.2
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.16
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.16
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	92.16
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	92.07
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	92.07
COG1322	448	Predicted nuclease of restriction endonuclease-lik	92.0
PLN00181	793	protein SPA1-RELATED; Provisional	91.94
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.92
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.89
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	91.86
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.85
KOG2991	330	consensus Splicing regulator [RNA processing and m	91.8
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	91.69
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.6
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	91.57
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.56
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.55
KOG0649	325	consensus WD40 repeat protein [General function pr	91.52
KOG3647	338	consensus Predicted coiled-coil protein [General f	91.51
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.48
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	91.48
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.44
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	91.44
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	91.42
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.35
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	91.31
PRK04043	419	tolB translocation protein TolB; Provisional	91.27
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.25
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	91.24
KOG0649	325	consensus WD40 repeat protein [General function pr	91.22
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	91.19
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.19
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.19
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.16
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	91.11
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.1
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	91.06
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.02
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.96
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	90.84
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.79
KOG0249	916	consensus LAR-interacting protein and related prot	90.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.32
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.27
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	90.26
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.24
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.23
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	90.08
PRK02889	427	tolB translocation protein TolB; Provisional	90.07
PRK02889	427	tolB translocation protein TolB; Provisional	89.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.74
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	89.7
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	89.69
PRK13684	334	Ycf48-like protein; Provisional	89.64
KOG3850	455	consensus Predicted membrane protein [Function unk	89.61
PTZ00420	568	coronin; Provisional	89.58
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.52
KOG0310	487	consensus Conserved WD40 repeat-containing protein	89.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.49
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.45
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.36
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.35
PLN00181	793	protein SPA1-RELATED; Provisional	89.34
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.33
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.33
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	89.26
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.21
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	89.2
PHA02562	562	46 endonuclease subunit; Provisional	89.19
PRK02224	880	chromosome segregation protein; Provisional	89.04
PRK11028	330	6-phosphogluconolactonase; Provisional	89.04
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	88.92
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	88.86
KOG1003	205	consensus Actin filament-coating protein tropomyos	88.86
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	88.78
PF14282	106	FlxA: FlxA-like protein	88.7
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	88.53
PHA02562	562	46 endonuclease subunit; Provisional	88.5
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	88.47
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	88.36
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	88.33
KOG1962	216	consensus B-cell receptor-associated protein and r	88.17
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.09
KOG1003	205	consensus Actin filament-coating protein tropomyos	88.03
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.03
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	87.98
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	87.95
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.93
KOG2048	691	consensus WD40 repeat protein [General function pr	87.88
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	87.85
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.84
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	87.75
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	87.73
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.73
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	87.65
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	87.63
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	87.52
KOG0964	1200	consensus Structural maintenance of chromosome pro	87.51
KOG3838	497	consensus Mannose lectin ERGIC-53, involved in gly	87.4
PRK01742	429	tolB translocation protein TolB; Provisional	87.37
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	87.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.31
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.21
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	87.2
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.16
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	87.11
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.02
PRK06231	205	F0F1 ATP synthase subunit B; Validated	86.96
PRK11546	143	zraP zinc resistance protein; Provisional	86.9
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	86.89
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	86.88
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	86.86
KOG4673	961	consensus Transcription factor TMF, TATA element m	86.85
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.77
PRK03947	140	prefoldin subunit alpha; Reviewed	86.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.7
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	86.69
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.59
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.54
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	86.51
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	86.49
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	86.45
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.45
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.44
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	86.44
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	86.39
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	86.37
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	86.35
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	85.85
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	85.77
PRK10780	165	periplasmic chaperone; Provisional	85.71
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	85.55
KOG0979	1072	consensus Structural maintenance of chromosome pro	85.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	85.18
PF06476	115	DUF1090: Protein of unknown function (DUF1090); In	85.07
PF14182	79	YgaB: YgaB-like protein	85.03
PF15233	134	SYCE1: Synaptonemal complex central element protei	84.99
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.96
KOG1937	521	consensus Uncharacterized conserved protein [Funct	84.96
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	84.94
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	84.89
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	84.87
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	84.87
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	84.87
PTZ00421	493	coronin; Provisional	84.78
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	84.76
PF14723	179	SSFA2_C: Sperm-specific antigen 2 C-terminus	84.73
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.68
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.62
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.49
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	84.3
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	84.29
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.11
KOG4571	294	consensus Activating transcription factor 4 [Trans	84.08
KOG0964	1200	consensus Structural maintenance of chromosome pro	84.08
PRK11519	719	tyrosine kinase; Provisional	83.89
KOG0249	916	consensus LAR-interacting protein and related prot	83.72
COG3206	458	GumC Uncharacterized protein involved in exopolysa	83.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	83.66
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	83.66
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	83.58
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	83.53
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	83.48
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	83.44
PRK03947	140	prefoldin subunit alpha; Reviewed	83.34
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	83.33
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	83.27
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	83.27
KOG0933	1174	consensus Structural maintenance of chromosome pro	83.17
KOG0288	459	consensus WD40 repeat protein TipD [General functi	83.13
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	83.13
KOG0933	1174	consensus Structural maintenance of chromosome pro	83.0
smart00284	255	OLF Olfactomedin-like domains.	82.9
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	82.89
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	82.79
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	82.64
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.6
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.59
KOG1937	521	consensus Uncharacterized conserved protein [Funct	82.5
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.47
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	82.46
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	82.36
PRK13684	334	Ycf48-like protein; Provisional	82.33
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	82.32
CHL00019	184	atpF ATP synthase CF0 B subunit	82.31
KOG3647	338	consensus Predicted coiled-coil protein [General f	82.3
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	82.18
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	82.09
PRK10803	263	tol-pal system protein YbgF; Provisional	82.02
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.9
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	81.89
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	81.85
PRK02119	73	hypothetical protein; Provisional	81.77
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	81.72
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	81.67
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	81.48
PRK07352	174	F0F1 ATP synthase subunit B; Validated	81.4
PF15358	558	TSKS: Testis-specific serine kinase substrate	81.36
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	81.2
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	81.17
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	81.15
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	81.12
PRK10698	222	phage shock protein PspA; Provisional	81.04
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	81.02
KOG3990	305	consensus Uncharacterized conserved protein [Funct	81.0
PF15358	558	TSKS: Testis-specific serine kinase substrate	80.96
PRK14011	144	prefoldin subunit alpha; Provisional	80.96
PRK15335	147	type III secretion system protein SpaM; Provisiona	80.87
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	80.77
KOG3433	203	consensus Protein involved in meiotic recombinatio	80.74
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	80.73
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	80.53
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.49
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	80.12
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	80.08

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.9e-43  Score=357.12  Aligned_cols=304  Identities=20%  Similarity=0.294  Sum_probs=249.2

Q ss_pred             CCccccCCC----CCeEEcccCCCCCCcccc--------eEEEEcCCCC-C-cccCcEEEEEcCCCceEEeeeCcccccC
Q 010847            4 GSWHLELPY----DLWVTLPVSGARPSPRYK--------KLYIVGGSRN-G-RFLSDVQVFDLRSLAWSNLRLETELDAD   69 (499)
Q Consensus         4 ~~~~~~~~~----~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~-~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~   69 (499)
                      +.+.++|.+    ++|..++..+..|.||++        +||||||... . ...+++++||+.+++|+.++++.     
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g-----  212 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG-----  212 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC-----
Confidence            455667755    899999987778999987        9999999743 2 34578999999999999877653     


Q ss_pred             ccccCCCCCCCC-CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 010847           70 KTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII  148 (499)
Q Consensus        70 ~~~~~~~~~~p~-~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv  148 (499)
                              ..|. .|.+|++++++++||+|||..... .++++++||+.+++|+.+++.+..|.+|.+|++++++++||+
T Consensus       213 --------~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv  283 (470)
T PLN02193        213 --------DVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV  283 (470)
T ss_pred             --------CCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE
Confidence                    2233 467999999999999999987654 378899999999999999855555899999999999999999


Q ss_pred             EcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847          149 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  228 (499)
Q Consensus       149 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  228 (499)
                      |||.+... ..+++++||+.+++|+.+++.+.+|.+|.+|+++.+++ +||++||.++. .++++++||+.+++|+.+..
T Consensus       284 ~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~  360 (470)
T PLN02193        284 FGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVET  360 (470)
T ss_pred             ECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEecc
Confidence            99987654 47899999999999999987667788999999998855 59999998643 47899999999999999876


Q ss_pred             CCCCCCcCcccEEEEECCEEEEEeCCCCC---------CCcceEEEEECCCCceEEeccCCC--CCCCCCCCCceEEEEE
Q 010847          229 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAII  297 (499)
Q Consensus       229 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l~~~~~--~~p~~~~~~~~~~~~~  297 (499)
                      .+..|.+|..|+++.++++||||||....         ...+++|+||+.+++|+.++.++.  ..|.+|..++++...+
T Consensus       361 ~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~  440 (470)
T PLN02193        361 FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI  440 (470)
T ss_pred             CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence            66778999999999999999999997531         135789999999999999987653  3455665555555556


Q ss_pred             cCceEEEEEcCCC--CCCCceEEEEECCC
Q 010847          298 EGEHHLVAFGGYN--GKYNNEVFVMRLKP  324 (499)
Q Consensus       298 ~~~~~l~v~GG~~--~~~~~~~~~~~~~~  324 (499)
                      .+++.||+|||.+  +...+|+|+|++..
T Consensus       441 ~~~~~~~~fGG~~~~~~~~~D~~~~~~~~  469 (470)
T PLN02193        441 DGKKGLVMHGGKAPTNDRFDDLFFYGIDS  469 (470)
T ss_pred             cCCceEEEEcCCCCccccccceEEEecCC
Confidence            6666799999995  45689999998753

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.3e-41  Score=333.36  Aligned_cols=299  Identities=20%  Similarity=0.279  Sum_probs=235.8

Q ss_pred             CCCCCeEEcccCC-CCCCcccc--------eEEEEcCCCC--CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCC
Q 010847           10 LPYDLWVTLPVSG-ARPSPRYK--------KLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   78 (499)
Q Consensus        10 ~~~~~W~~~~~~~-~~p~~r~~--------~l~~~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      |....|..++..+ ..|.+|..        +|||+||...  ....+++++||+.+++|+.++++..            .
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------------~   71 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------------V   71 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------------C
Confidence            5788999998643 46888876        9999999843  3346799999999999999887632            1


Q ss_pred             CCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC--CCCCCCCcceEEEEECCEEEEEcCcCCCC
Q 010847           79 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR  156 (499)
Q Consensus        79 ~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~  156 (499)
                      |...+.+|++++++++||+|||...... .+++++||+.+++|+.++..  ...|.+|.+|++++++++||||||.+...
T Consensus        72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~  150 (341)
T PLN02153         72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG  150 (341)
T ss_pred             CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence            1223558999999999999999875543 67899999999999998731  12388999999999999999999986432


Q ss_pred             -----CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC--------CCCCCcEEEEECCCCce
Q 010847          157 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--------SIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       157 -----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~i~~~d~~~~~W  223 (499)
                           ..++++++||+.+++|..++.++.+|.+|.+|+++.+++ +|||+||...        ....+++++||+.+++|
T Consensus       151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence                 135789999999999999988776778999999988855 5999998642        12368899999999999


Q ss_pred             EecccCCCCCCcCcccEEEEECCEEEEEeCCCC---------CCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEE
Q 010847          224 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS  294 (499)
Q Consensus       224 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~  294 (499)
                      +.+...+.+|.+|..|++++++++||||||...         ....+++|.||+.+++|+.+..... .|.++..+.++.
T Consensus       230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~-~~~pr~~~~~~~  308 (341)
T PLN02153        230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE-PAMPRGWTAYTT  308 (341)
T ss_pred             EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC-CCCCCccccccc
Confidence            999766778999999999999999999999632         1225799999999999999865322 233444444455


Q ss_pred             EEEcCceEEEEEcCCCC--CCCceEEEEECC
Q 010847          295 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK  323 (499)
Q Consensus       295 ~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~  323 (499)
                      +++.+++.|||+||.++  ...+|+|.|+..
T Consensus       309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence            56666668999999964  467899999764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.7e-40  Score=340.49  Aligned_cols=273  Identities=23%  Similarity=0.341  Sum_probs=237.6

Q ss_pred             eEEEEcCCCC-CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~  109 (499)
                      .||++||..+ ....+.+..|||.++.|..+++++                .+|..+++++++|+||++||.+......+
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~----------------~~r~~~~~~~~~~~lYv~GG~~~~~~~l~  349 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP----------------SPRCRVGVAVLNGKLYVVGGYDSGSDRLS  349 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC----------------cccccccEEEECCEEEEEccccCCCcccc
Confidence            8999999986 778899999999999999999884                58999999999999999999985333478


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      ++++||+.+++|..++   +|+.+|.+++++++++.||++||.++.. +.+++++||+.+++|..+.+   ++.+|++|+
T Consensus       350 ~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~---m~~~r~~~g  422 (571)
T KOG4441|consen  350 SVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAP---MLTRRSGHG  422 (571)
T ss_pred             eEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCC---CCcceeeeE
Confidence            9999999999999998   9999999999999999999999999655 68899999999999999874   667999999


Q ss_pred             EEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEEC
Q 010847          190 AALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  268 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  268 (499)
                      ++++ +++||++||.++.. +++.+.+|||.+++|+.+   ++++.+|.+|+++++++.||++||.++......+..||+
T Consensus       423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence            9999 55699999988777 999999999999999997   789999999999999999999999988666778999999


Q ss_pred             CCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCcccCCchh
Q 010847          269 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAA  338 (499)
Q Consensus       269 ~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~  338 (499)
                      .+++|+.+++++..    +.+.  ..++.+  +.+|++||+++. ..+.+..||+..++|.....+...+.
T Consensus       499 ~~~~W~~v~~m~~~----rs~~--g~~~~~--~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~  561 (571)
T KOG4441|consen  499 ETNQWTMVAPMTSP----RSAV--GVVVLG--GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRG  561 (571)
T ss_pred             CCCceeEcccCccc----cccc--cEEEEC--CEEEEEecccCccccceeEEcCCCCCceeeCCCcccccc
Confidence            99999999766432    2222  223333  479999999764 67889999999999999888444433

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=1.9e-39  Score=329.29  Aligned_cols=303  Identities=20%  Similarity=0.315  Sum_probs=237.4

Q ss_pred             eEEEEcCCCCCcccCcEEEE--EcCC----CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVF--DLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  104 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~y--d~~t----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~  104 (499)
                      +|+.|+|.... .++.+-+|  ++.+    ++|..++++             +..|.+|.+|++++++++||++||....
T Consensus       122 ~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~-------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~  187 (470)
T PLN02193        122 KIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQK-------------GEGPGLRCSHGIAQVGNKIYSFGGEFTP  187 (470)
T ss_pred             eEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccC-------------CCCCCCccccEEEEECCEEEEECCcCCC
Confidence            77778886543 35554444  7655    899998865             3347899999999999999999997543


Q ss_pred             C-CCCceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCC
Q 010847          105 S-SDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  182 (499)
Q Consensus       105 ~-~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p  182 (499)
                      . ...+++++||+.+++|+.++..+.+|. .|.+|++++++++||+|||.+... .++++++||+.+++|+.+.+++..|
T Consensus       188 ~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P  266 (470)
T PLN02193        188 NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGP  266 (470)
T ss_pred             CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCC
Confidence            2 234679999999999999876666665 467899999999999999987654 5799999999999999998876678


Q ss_pred             CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcce
Q 010847          183 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       183 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~  262 (499)
                      .+|..|+++.++ ++||||||.+....+++++.||+.+++|+.+...+.+|.+|..|+++++++++||+||.+.. ..++
T Consensus       267 ~~R~~h~~~~~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d  344 (470)
T PLN02193        267 TPRSFHSMAADE-ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD  344 (470)
T ss_pred             CCccceEEEEEC-CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc
Confidence            999999998884 55999999987778899999999999999987656678899999999999999999997643 3689


Q ss_pred             EEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC----------CCCceEEEEECCCCCCCCCcc
Q 010847          263 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI  332 (499)
Q Consensus       263 ~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~~~~~~W~~~~~  332 (499)
                      +++||+.+++|+.++.+. ..|.+|..++++  +++  +.||||||...          ...+++|+||+.+++|..+..
T Consensus       345 v~~yD~~t~~W~~~~~~g-~~P~~R~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        345 VHYYDPVQDKWTQVETFG-VRPSERSVFASA--AVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             eEEEECCCCEEEEeccCC-CCCCCcceeEEE--EEC--CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence            999999999999987643 235566655543  333  47999999752          245789999999999998765


Q ss_pred             c------CCchhhhhhhhh-----HHHHHhcccc
Q 010847          333 F------QSPAAAAAAASV-----TAAYALAKSE  355 (499)
Q Consensus       333 ~------~~~~~~~~~~~~-----~~~~~~~~~~  355 (499)
                      +      |.+|.+++++..     ..++.++|..
T Consensus       420 ~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~  453 (470)
T PLN02193        420 FGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA  453 (470)
T ss_pred             CCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence            3      344444433221     2366666664

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=3.6e-39  Score=280.65  Aligned_cols=271  Identities=27%  Similarity=0.482  Sum_probs=225.8

Q ss_pred             eEEEEcCCCCCccc-----CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC
Q 010847           31 KLYIVGGSRNGRFL-----SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~-----~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~  105 (499)
                      +||-|||+..+..+     =+|.+++..+.+|..+|+-...  +..+..- +..|-.|.+|+++.+.+++|+|||.+...
T Consensus        25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k--a~i~~~y-p~VPyqRYGHtvV~y~d~~yvWGGRND~e  101 (392)
T KOG4693|consen   25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK--ATIESPY-PAVPYQRYGHTVVEYQDKAYVWGGRNDDE  101 (392)
T ss_pred             eEEecCCcccccccccCCcceeEEeeccceeEEecCccccc--ccccCCC-CccchhhcCceEEEEcceEEEEcCccCcc
Confidence            99999998543322     2799999999999999883221  1222211 45577899999999999999999999877


Q ss_pred             CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC-CCccCcEEEEECCCCeeEEeeecCCCCCC
Q 010847          106 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS-RKLLNDVHFLDLETMTWDAVEVTQTPPAP  184 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~p~~  184 (499)
                      ..-+.++.||+.++.|.+...+|..|.+|.+|+++++++.+|||||+... ..++++++.+|++|.+|+.+.+.|.+|.-
T Consensus       102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw  181 (392)
T KOG4693|consen  102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW  181 (392)
T ss_pred             cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence            76788999999999999999999999999999999999999999998644 34788999999999999999999999999


Q ss_pred             CccceEEEEcCcEEEEEcCCCCC---------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCC
Q 010847          185 RYDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGD  255 (499)
Q Consensus       185 r~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~  255 (499)
                      |..|++++++ +.+|||||.++.         .+.+.|-.+|+.|..|......+-.|.+|..|++.++++.+|||||++
T Consensus       182 RDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYn  260 (392)
T KOG4693|consen  182 RDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYN  260 (392)
T ss_pred             hhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccc
Confidence            9999999995 679999998532         467789999999999999876677899999999999999999999998


Q ss_pred             CCCC--cceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847          256 NNNG--CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  310 (499)
Q Consensus       256 ~~~~--~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~  310 (499)
                      +...  ++|+|.||+.+..|+.|.. .+..|.+|.++  |+++..+  .+|+|||..
T Consensus       261 g~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRq--C~~v~g~--kv~LFGGTs  312 (392)
T KOG4693|consen  261 GTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQ--CSVVSGG--KVYLFGGTS  312 (392)
T ss_pred             hhhhhhhcceeecccccchheeeec-cCCCCCcccce--eEEEECC--EEEEecCCC
Confidence            7543  7999999999999998754 44445555444  4555555  589999964

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=324.74  Aligned_cols=243  Identities=28%  Similarity=0.425  Sum_probs=224.6

Q ss_pred             ccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC-CCcccCcEEEEEcCCCceEEeeeCcccccCccccCCC
Q 010847            6 WHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   76 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~   76 (499)
                      -+|||..+.|..++   .+|.+|..        +||++||.+ +...++.+++|||.+++|..+++|.            
T Consensus       304 e~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~------------  368 (571)
T KOG4441|consen  304 ECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN------------  368 (571)
T ss_pred             EEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc------------
Confidence            37999999999999   77887776        899999998 6788899999999999999999985            


Q ss_pred             CCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCC
Q 010847           77 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR  156 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~  156 (499)
                          .+|.++++++++|.||+.||.++... ++++++||+.+++|+.++   +|+.+|.+|++++++++||++||.+...
T Consensus       369 ----~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  369 ----TKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             ----CccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence                48999999999999999999996665 889999999999999997   8999999999999999999999998877


Q ss_pred             CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcC
Q 010847          157 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  236 (499)
Q Consensus       157 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  236 (499)
                      .+.+++.+|||.+++|+.++   +|+.+|.+++++++ +++||++||.++......+++||+.+++|+.+   .+++.+|
T Consensus       441 ~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~r  513 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSPR  513 (571)
T ss_pred             cccceEEEEcCCCCceeecC---CcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCcccc
Confidence            67999999999999999998   47789999999998 55599999998877778899999999999998   6799999


Q ss_pred             cccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       237 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      ..++++++++.+|++||.++...++.+..||+.+++|+.+..
T Consensus       514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            999999999999999999999999999999999999999876

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1e-37  Score=321.70  Aligned_cols=271  Identities=13%  Similarity=0.198  Sum_probs=221.4

Q ss_pred             cccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCC
Q 010847           27 PRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  106 (499)
Q Consensus        27 ~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~  106 (499)
                      +|...|++.||. .......+++||+.+++|..+++++                .+|.+|++++++++||++||......
T Consensus       255 ~r~~~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~~mp----------------~~r~~~~~a~l~~~IYviGG~~~~~~  317 (557)
T PHA02713        255 PRQLCLVCHDTK-YNVCNPCILVYNINTMEYSVISTIP----------------NHIINYASAIVDNEIIIAGGYNFNNP  317 (557)
T ss_pred             CcceEEEEecCc-cccCCCCEEEEeCCCCeEEECCCCC----------------ccccceEEEEECCEEEEEcCCCCCCC
Confidence            454567777663 1223357899999999999998874                47889999999999999999764333


Q ss_pred             CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          107 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      ..+++++||+.++.|..++   +||.+|.++++++++++||++||.+... ..+++++||+.+++|..++   ++|.+|.
T Consensus       318 ~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~  390 (557)
T PHA02713        318 SLNKVYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALS  390 (557)
T ss_pred             ccceEEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccc
Confidence            4678999999999999997   8999999999999999999999986543 4788999999999999887   5788999


Q ss_pred             cceEEEEcCcEEEEEcCCCCC------------------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEE
Q 010847          187 DHSAALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  248 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  248 (499)
                      +++++++ +++||++||.++.                  ..++.+++|||.+++|+.+   ++++.+|..+++++++++|
T Consensus       391 ~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~I  466 (557)
T PHA02713        391 SYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDI  466 (557)
T ss_pred             cccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEE
Confidence            9999988 5569999997632                  1367899999999999997   6799999999999999999


Q ss_pred             EEEeCCCCCCCc-ceEEEEECCC-CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          249 YIVGGGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       249 ~v~GG~~~~~~~-~~~~~~d~~~-~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      ||+||.++.... +.+++||+.+ ++|+.+++++.    +|.++.  ++++++  .||++||+++.  ..+.+||+.+++
T Consensus       467 Yv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~~--~~~~~~--~iyv~Gg~~~~--~~~e~yd~~~~~  536 (557)
T PHA02713        467 YVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSALH--TILHDN--TIMMLHCYESY--MLQDTFNVYTYE  536 (557)
T ss_pred             EEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----ccccce--eEEECC--EEEEEeeecce--eehhhcCccccc
Confidence            999998654333 4578999999 89999987753    343333  344444  79999999873  478899999999


Q ss_pred             CCCCcccCC
Q 010847          327 IPRPKIFQS  335 (499)
Q Consensus       327 W~~~~~~~~  335 (499)
                      |..+...++
T Consensus       537 W~~~~~~~~  545 (557)
T PHA02713        537 WNHICHQHS  545 (557)
T ss_pred             ccchhhhcC
Confidence            998776554

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.7e-37  Score=301.04  Aligned_cols=286  Identities=20%  Similarity=0.286  Sum_probs=215.6

Q ss_pred             cCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC-CCCceEEEEECCCCcEEEeecCCCC
Q 010847           52 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKV  130 (499)
Q Consensus        52 ~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~  130 (499)
                      +...+|..+++..            +..|.+|.+|++++++++|||+||..... ...+++++||+.+++|..+++.+..
T Consensus         4 ~~~~~W~~~~~~~------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~   71 (341)
T PLN02153          4 TLQGGWIKVEQKG------------GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV   71 (341)
T ss_pred             ccCCeEEEecCCC------------CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC
Confidence            3567899988753            33578999999999999999999986432 2356899999999999998755444


Q ss_pred             CC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecC--CCCCCCccceEEEEcCcEEEEEcCCCCC
Q 010847          131 PV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS  207 (499)
Q Consensus       131 p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~  207 (499)
                      |. .+.+|++++++++||+|||.+... ..+++++||+.+++|+.+.++.  ..|.+|..|+++.++ ++||||||.+..
T Consensus        72 p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~  149 (341)
T PLN02153         72 PRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE-NHVYVFGGVSKG  149 (341)
T ss_pred             CCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC-CEEEEECCccCC
Confidence            44 345788999999999999987654 4789999999999999987542  237899999998884 559999998633


Q ss_pred             ------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC--------CCcceEEEEECCCCce
Q 010847          208 ------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------NGCQETIVLNMTKLAW  273 (499)
Q Consensus       208 ------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~d~~~~~W  273 (499)
                            ..++++++||+.+++|+.+...+..|.+|.+|+++.+++++||+||.+..        ...+++++||+.+++|
T Consensus       150 ~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        150 GLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             CccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence                  24578999999999999986655567899999999999999999986421        1257899999999999


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC----------CCCCceEEEEECCCCCCCCCcc---cCCchhhh
Q 010847          274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI---FQSPAAAA  340 (499)
Q Consensus       274 ~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~~~~~~~W~~~~~---~~~~~~~~  340 (499)
                      +.++... ..|.+|.+++++  ++.  +.||||||..          +...+++|+||+.+++|..+..   .+.|+..+
T Consensus       230 ~~~~~~g-~~P~~r~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~  304 (341)
T PLN02153        230 TEVETTG-AKPSARSVFAHA--VVG--KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT  304 (341)
T ss_pred             EeccccC-CCCCCcceeeeE--EEC--CEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc
Confidence            9986532 235556555443  333  4799999973          2245799999999999987753   23344332


Q ss_pred             --hhhh-h--HHHHHhccccc
Q 010847          341 --AAAS-V--TAAYALAKSEK  356 (499)
Q Consensus       341 --~~~~-~--~~~~~~~~~~~  356 (499)
                        ..+. .  ..+|.++|-..
T Consensus       305 ~~~~~~v~~~~~~~~~gG~~~  325 (341)
T PLN02153        305 AYTTATVYGKNGLLMHGGKLP  325 (341)
T ss_pred             cccccccCCcceEEEEcCcCC
Confidence              2222 2  24777777643

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=3.9e-37  Score=311.18  Aligned_cols=295  Identities=33%  Similarity=0.562  Sum_probs=253.2

Q ss_pred             CeEEc-ccCCCCCCcccc--------eEEEEcCCCCCcccCc--EEEEEcCCCceEEeeeCcccccCccccCCCCCCCCC
Q 010847           14 LWVTL-PVSGARPSPRYK--------KLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP   82 (499)
Q Consensus        14 ~W~~~-~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~--~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~   82 (499)
                      .|... ...+..|.+|++        ++|||||........+  +++||..+..|.......             ..|++
T Consensus        46 ~~~~~~~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g-------------~~p~~  112 (482)
T KOG0379|consen   46 PENLGCDVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG-------------DEPSP  112 (482)
T ss_pred             eeccccccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC-------------CCCCc
Confidence            34443 355678888988        9999999876665555  999999999999988874             44789


Q ss_pred             ccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcE
Q 010847           83 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV  162 (499)
Q Consensus        83 r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v  162 (499)
                      |.+|++++++++||+|||.+......++++.||+.|++|..+.+.+.+|.+|.+|++++++++||||||.+......|++
T Consensus       113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl  192 (482)
T KOG0379|consen  113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDL  192 (482)
T ss_pred             ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeee
Confidence            99999999999999999998644457899999999999999999999999999999999999999999999887689999


Q ss_pred             EEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEE
Q 010847          163 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG  241 (499)
Q Consensus       163 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~  241 (499)
                      |+||+.+.+|.++...|..|.||.+|+++++++. ++||||.. +..+++++|.+|+.+..|..+...+..|.+|++|++
T Consensus       193 ~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~  271 (482)
T KOG0379|consen  193 HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSL  271 (482)
T ss_pred             eeeccccccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeee
Confidence            9999999999999999999999999999999776 66666665 778999999999999999988888999999999999


Q ss_pred             EEECCEEEEEeCCCCC--CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC--CCCCceE
Q 010847          242 ITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEV  317 (499)
Q Consensus       242 ~~~~~~l~v~GG~~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~  317 (499)
                      +..+++++|+||....  ..+.++|.||+.+..|..+.......|.++..+..+.....+...+.++||..  .....++
T Consensus       272 ~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (482)
T KOG0379|consen  272 TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADV  351 (482)
T ss_pred             EEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhc
Confidence            9999999999998775  25789999999999999998777566888888988887777777777778743  3334445


Q ss_pred             EEEEC
Q 010847          318 FVMRL  322 (499)
Q Consensus       318 ~~~~~  322 (499)
                      +.+..
T Consensus       352 ~~~~~  356 (482)
T KOG0379|consen  352 FSLQI  356 (482)
T ss_pred             ccccc
Confidence            44433

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=8.8e-38  Score=322.17  Aligned_cols=242  Identities=12%  Similarity=0.148  Sum_probs=208.4

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC-CCcccCcEEEEEcCCCceEEeeeCcccccCccccC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   74 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~   74 (499)
                      ..|+|||.+++|..++   ++|.+|..        +||++||.. +...++.+++|||.+++|..+++++          
T Consensus       273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~----------  339 (557)
T PHA02713        273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI----------  339 (557)
T ss_pred             CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc----------
Confidence            3589999999999999   67777744        999999975 4456789999999999999998874          


Q ss_pred             CCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCC
Q 010847           75 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  154 (499)
Q Consensus        75 ~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~  154 (499)
                            .+|.++++++++++||++||.++... .+++++||+.+++|+.++   +||.+|.++++++++++||++||.+.
T Consensus       340 ------~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~  409 (557)
T PHA02713        340 ------KNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE  409 (557)
T ss_pred             ------chhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence                  58999999999999999999865443 678999999999999998   89999999999999999999999864


Q ss_pred             CC-----------------CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEE
Q 010847          155 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVL  216 (499)
Q Consensus       155 ~~-----------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~  216 (499)
                      ..                 ...+.+++|||.+++|+.++   ++|.+|..++++++++ .||++||.++.. ..+.+++|
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECC-EEEEEeCCCCCCccceeEEEe
Confidence            31                 12578999999999999887   4778999999998855 599999986433 33568999


Q ss_pred             ECCC-CceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          217 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       217 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      |+.+ ++|+.+   +++|.+|..+++++++++||++||.++.   ..+.+||+.+++|+.+.+
T Consensus       486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence            9999 899997   6899999999999999999999998763   368899999999998864

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=268.06  Aligned_cols=269  Identities=27%  Similarity=0.445  Sum_probs=222.5

Q ss_pred             CCccceeEEEECCEEEEEcccCCCCC----CCceEEEEECCCCcEEEeec--C--------CCCCCCCcceEEEEECCEE
Q 010847           81 PPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMET--S--------GKVPVARGGHSVTLVGSRL  146 (499)
Q Consensus        81 ~~r~~~s~~~~~~~iyv~GG~~~~~~----~~~~~~~yd~~t~~W~~~~~--~--------g~~p~~r~~~~~~~~~~~l  146 (499)
                      |.|.+|+++.+|..||-|||++....    ..-++.++|..+-.|.++++  +        .-.|..|++|+.+.+.+++
T Consensus        12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~   91 (392)
T KOG4693|consen   12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA   91 (392)
T ss_pred             cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence            47999999999999999999987765    23479999999999999875  1        1256789999999999999


Q ss_pred             EEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC--CCCCCcEEEEECCCCceE
Q 010847          147 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       147 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~  224 (499)
                      |+.||.++....+|.+++||++++.|.++...|..|.+|.+|+++++++. +|||||+..  ..++++++.+|++|.+|+
T Consensus        92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~~FS~d~h~ld~~TmtWr  170 (392)
T KOG4693|consen   92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ-MYIFGGYEEDAQRFSQDTHVLDFATMTWR  170 (392)
T ss_pred             EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE-EEEecChHHHHHhhhccceeEeccceeee
Confidence            99999998777899999999999999999999999999999999999665 999999853  467899999999999999


Q ss_pred             ecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCC---------cceEEEEECCCCceEEeccCCCCCCCCCCCCceEEE
Q 010847          225 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---------CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA  295 (499)
Q Consensus       225 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---------~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~  295 (499)
                      .+...+.+|.-|.+|+++++++.+|||||..+...         .+.+..+|+.|..|...+. ....|..|..|+.  .
T Consensus       171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~--f  247 (392)
T KOG4693|consen  171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHST--F  247 (392)
T ss_pred             ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccce--E
Confidence            99988999999999999999999999999754432         4567899999999998643 3344666666654  4


Q ss_pred             EEcCceEEEEEcCCCCC---CCceEEEEECCCCCCCCCcc---cCCchhh-hhhhhhHHHHHhcccc
Q 010847          296 IIEGEHHLVAFGGYNGK---YNNEVFVMRLKPRDIPRPKI---FQSPAAA-AAAASVTAAYALAKSE  355 (499)
Q Consensus       296 ~~~~~~~l~v~GG~~~~---~~~~~~~~~~~~~~W~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~  355 (499)
                      +.++  .||+|||+++.   -.+|+|.||+.+..|.....   .|.++.+ ++.++-..+|-++|..
T Consensus       248 vYng--~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs  312 (392)
T KOG4693|consen  248 VYNG--KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS  312 (392)
T ss_pred             EEcc--eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence            4555  69999999864   47899999999999987654   3555554 4444455567777654

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=6.8e-35  Score=303.45  Aligned_cols=246  Identities=18%  Similarity=0.286  Sum_probs=208.4

Q ss_pred             ccccCCCCCeEEcccCCCCCCccc-c------eEEEEcCCCCC-cccCcEEEEEcCCCceEEeeeCcccccCccccCCCC
Q 010847            6 WHLELPYDLWVTLPVSGARPSPRY-K------KLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   77 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~~~~~p~~r~-~------~l~~~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~   77 (499)
                      .+|++..++|..++   ..|.+.. +      +||++||.... ...+++++||+.+++|..++++              
T Consensus       267 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~--------------  329 (534)
T PHA03098        267 ITNYSPLSEINTII---DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL--------------  329 (534)
T ss_pred             eecchhhhhccccc---CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC--------------
Confidence            36888899999887   3343333 2      99999998653 4567999999999999998776              


Q ss_pred             CCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCC
Q 010847           78 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK  157 (499)
Q Consensus        78 ~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~  157 (499)
                        |.+|.+|++++++++||++||..... ..+++++||+.+++|+.++   ++|.+|.+++++.++++||++||......
T Consensus       330 --~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~  403 (534)
T PHA03098        330 --IYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE  403 (534)
T ss_pred             --CcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence              45899999999999999999987443 3678999999999999987   89999999999999999999999865555


Q ss_pred             ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC---CCCcEEEEECCCCceEecccCCCCCC
Q 010847          158 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT  234 (499)
Q Consensus       158 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~  234 (499)
                      .++++++||+.+++|+.+.   ++|.+|.+|+++.+ +++||++||.+...   ..+.+++||+.+++|+.+   +++|.
T Consensus       404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~  476 (534)
T PHA03098        404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF  476 (534)
T ss_pred             ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence            6789999999999999886   47889999998888 45699999976432   356799999999999997   56788


Q ss_pred             cCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCC
Q 010847          235 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  281 (499)
Q Consensus       235 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~  281 (499)
                      +|..|+++.+++++||+||.+.....+++++||+.+++|+.++.+|.
T Consensus       477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            89999999999999999998766667899999999999999877553

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=9e-35  Score=293.98  Aligned_cols=252  Identities=31%  Similarity=0.524  Sum_probs=221.5

Q ss_pred             CCCCCCccceeEEEECCEEEEEcccCCCCCCCc-eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847           77 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS  155 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~  155 (499)
                      ...|.+|.+|+++.+++++|||||......... ++|+||..+..|.....+|..|.+|.+|++++++++||+|||.+..
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~  134 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK  134 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence            455889999999999999999999877665233 6999999999999999999999999999999999999999999865


Q ss_pred             CCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCceEecccCCCCCC
Q 010847          156 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT  234 (499)
Q Consensus       156 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~  234 (499)
                      ....+++++||+.|++|..+.+.+.+|++|.+|+++.++ +++|||||.+... ..|++|+||+.+.+|.++.+.+..|.
T Consensus       135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~  213 (482)
T KOG0379|consen  135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS  213 (482)
T ss_pred             CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence            556899999999999999999999999999999999996 6699999998766 89999999999999999999999999


Q ss_pred             cCcccEEEEECCEEEEEeCCC-CCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-
Q 010847          235 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-  312 (499)
Q Consensus       235 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-  312 (499)
                      ||++|++++++++++||||++ ....++|+|.||+.+..|..+ ......|.+|.+|+.++   . ...++++||.... 
T Consensus       214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~---~-~~~~~l~gG~~~~~  288 (482)
T KOG0379|consen  214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTV---S-GDHLLLFGGGTDPK  288 (482)
T ss_pred             CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEE---E-CCEEEEEcCCcccc
Confidence            999999999999999999988 556689999999999999955 44556678888887652   2 3468888887652 


Q ss_pred             --CCceEEEEECCCCCCCCCcccC
Q 010847          313 --YNNEVFVMRLKPRDIPRPKIFQ  334 (499)
Q Consensus       313 --~~~~~~~~~~~~~~W~~~~~~~  334 (499)
                        ...++|.|+.....|.......
T Consensus       289 ~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  289 QEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccccccceeeeeccc
Confidence              6889999999999998876544

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=3.7e-34  Score=297.92  Aligned_cols=267  Identities=20%  Similarity=0.225  Sum_probs=215.8

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+++.||..  .....+..|++.+.+|..++..+                 .+..|++++++++||++||........++
T Consensus       252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~~  312 (534)
T PHA03098        252 IIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVNS  312 (534)
T ss_pred             ceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeecc
Confidence            566666654  23445678899999998876432                 34557899999999999998765555678


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      ++.||+.+++|..++   ++|.+|.++++++++++||++||.+... ..+++++||+.+++|+.++   ++|.+|.+|++
T Consensus       313 v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~  385 (534)
T PHA03098        313 VVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCV  385 (534)
T ss_pred             EEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceE
Confidence            999999999999887   8899999999999999999999987433 5789999999999999876   57889999999


Q ss_pred             EEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCC---cceEEEE
Q 010847          191 ALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIVL  266 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~~~~~~  266 (499)
                      +.++ +.||++||.. ....++++++||+.+++|+.+   .++|.+|.+|+++.+++++||+||.+....   .+++++|
T Consensus       386 ~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  461 (534)
T PHA03098        386 VNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESY  461 (534)
T ss_pred             EEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEe
Confidence            8884 5699999964 334578999999999999997   568899999999999999999999764432   5679999


Q ss_pred             ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCC-CceEEEEECCCCCCCCCcccCC
Q 010847          267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPRDIPRPKIFQS  335 (499)
Q Consensus       267 d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~~W~~~~~~~~  335 (499)
                      |+.+++|+.++.++    .++.++++  ++.+  +.|||+||.++.. .+++++||+..+.|...+.+|.
T Consensus       462 d~~~~~W~~~~~~~----~~r~~~~~--~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        462 NPVTNKWTELSSLN----FPRINASL--CIFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             cCCCCceeeCCCCC----cccccceE--EEEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            99999999987654    23545543  3333  4799999987543 6789999999999988776544

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=266.68  Aligned_cols=240  Identities=24%  Similarity=0.411  Sum_probs=205.1

Q ss_pred             CCCCCcccc----------eEEEEcCC--CC--CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee
Q 010847           22 GARPSPRYK----------KLYIVGGS--RN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC   87 (499)
Q Consensus        22 ~~~p~~r~~----------~l~~~GG~--~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s   87 (499)
                      -++|+||+.          -|++|||-  ++  ...+|+++.||..+.+|+.+...              .+|+||++|.
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq  126 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQ  126 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCccce
Confidence            357888887          89999995  33  23578999999999999999864              4589999999


Q ss_pred             EEEEC-CEEEEEcccCCCCC-----CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC---CCc
Q 010847           88 MVKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKL  158 (499)
Q Consensus        88 ~~~~~-~~iyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~  158 (499)
                      +|++. |.+|+|||--....     .+.++|.||+.+++|+++...| .|.+|++|-|++..++|++|||+-..   ..|
T Consensus       127 ~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Y  205 (521)
T KOG1230|consen  127 AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIY  205 (521)
T ss_pred             eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEE
Confidence            99996 89999999654332     4678999999999999998764 89999999999999999999998543   238


Q ss_pred             cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC---------CCCCCCcEEEEECCC-----CceE
Q 010847          159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWS  224 (499)
Q Consensus       159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~-----~~W~  224 (499)
                      .|++|+||+.+.+|+++.+.|.-|.||++|++.+..++.|||.||++         .+...+++|.+++.+     -.|.
T Consensus       206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~  285 (521)
T KOG1230|consen  206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT  285 (521)
T ss_pred             eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence            99999999999999999998888999999999998666699999985         235688999999988     4699


Q ss_pred             ecccCCCCCCcCcccEEEEECC-EEEEEeCCCCC---------CCcceEEEEECCCCceEEe
Q 010847          225 QPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       225 ~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l  276 (499)
                      .+...+..|.||+++++++..+ +.+.|||..+-         ..+||+|.||+..+.|...
T Consensus       286 kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  286 KVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             eccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            9988888999999999988855 89999997542         2369999999999999865

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=5e-33  Score=270.65  Aligned_cols=251  Identities=18%  Similarity=0.235  Sum_probs=188.4

Q ss_pred             eEEEEcCCCCC----------cccCcEEEEE-cC-CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEE
Q 010847           31 KLYIVGGSRNG----------RFLSDVQVFD-LR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL   98 (499)
Q Consensus        31 ~l~~~GG~~~~----------~~~~~~~~yd-~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~   98 (499)
                      .|||+||.+..          .+++++++|+ +. +.+|..++++                |.+|..+++++++++||++
T Consensus        15 ~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~~~~~~~~~~lyvi   78 (323)
T TIGR03548        15 YILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAYGASVSVENGIYYI   78 (323)
T ss_pred             EEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------CccccceEEEEECCEEEEE
Confidence            89999998643          2456889886 33 2379988776                4578888899999999999


Q ss_pred             cccCCCCCCCceEEEEECCCCcEE-EeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeee
Q 010847           99 GGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  177 (499)
Q Consensus        99 GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~  177 (499)
                      ||.+.... .+++++||+.++.|. .....+++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.+++
T Consensus        79 GG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~  156 (323)
T TIGR03548        79 GGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPD  156 (323)
T ss_pred             cCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCC
Confidence            99876543 678999999999983 1122238999999999999999999999975433 47899999999999999874


Q ss_pred             cCCCC-CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC--CCCCcCcccEEEE-ECCEEEEEeC
Q 010847          178 TQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAGIT-IDENWYIVGG  253 (499)
Q Consensus       178 ~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~~~-~~~~l~v~GG  253 (499)
                         +| .+|..|+++.++ ++||||||.+... .+++++||+.+++|+.+....  ..|.++..++++. .+++|||+||
T Consensus       157 ---~p~~~r~~~~~~~~~-~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG  231 (323)
T TIGR03548       157 ---FPGEPRVQPVCVKLQ-NELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG  231 (323)
T ss_pred             ---CCCCCCCcceEEEEC-CEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence               44 378888887774 5699999986433 467899999999999985432  2344444555444 4789999999


Q ss_pred             CCCCC--------------------------------CcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010847          254 GDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  301 (499)
Q Consensus       254 ~~~~~--------------------------------~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~  301 (499)
                      .+...                                ..+++++||+.+++|+.++.+|.   .+|.++++  ++++  +
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~~~~~--~~~~--~  304 (323)
T TIGR03548       232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF---FARCGAAL--LLTG--N  304 (323)
T ss_pred             cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc---cccCchhe--EEEC--C
Confidence            76321                                12579999999999999875542   24555544  3444  4


Q ss_pred             EEEEEcCCCC
Q 010847          302 HLVAFGGYNG  311 (499)
Q Consensus       302 ~l~v~GG~~~  311 (499)
                      .||++||...
T Consensus       305 ~iyv~GG~~~  314 (323)
T TIGR03548       305 NIFSINGELK  314 (323)
T ss_pred             EEEEEecccc
Confidence            6999999753

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=5.1e-33  Score=270.57  Aligned_cols=267  Identities=17%  Similarity=0.218  Sum_probs=203.9

Q ss_pred             CCccceeEEEECCEEEEEcccCCCCC---------CCceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 010847           81 PPMSDHCMVKWGTKLLILGGHYKKSS---------DSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLVGSRLIIF  149 (499)
Q Consensus        81 ~~r~~~s~~~~~~~iyv~GG~~~~~~---------~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~  149 (499)
                      +.+.++.++++++.|||+||.+....         ..+++++|+...  ..|..++   ++|.+|..+++++++++||++
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi   78 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI   78 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence            46889999999999999999876531         345788886333  3798886   899999988899999999999


Q ss_pred             cCcCCCCCccCcEEEEECCCCeeE-EeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847          150 GGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  228 (499)
Q Consensus       150 GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  228 (499)
                      ||.+... ..+++++||+.+++|. .....+++|.+|..|++++++ ++||++||......++++++||+.+++|+.+  
T Consensus        79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~-~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~--  154 (323)
T TIGR03548        79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD-GTLYVGGGNRNGKPSNKSYLFNLETQEWFEL--  154 (323)
T ss_pred             cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC-CEEEEEeCcCCCccCceEEEEcCCCCCeeEC--
Confidence            9987644 4789999999999983 223345788999999998884 5699999986666689999999999999997  


Q ss_pred             CCCCC-CcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCC-CCCCCCCCCceEEEEEcCceEEEEE
Q 010847          229 KGDLV-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEHHLVAF  306 (499)
Q Consensus       229 ~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~-~~p~~~~~~~~~~~~~~~~~~l~v~  306 (499)
                       .++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++.++. ..|..+.+  .+.+++.+ +.|||+
T Consensus       155 -~~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~--~~~~~~~~-~~iyv~  229 (323)
T TIGR03548       155 -PDFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLG--AASIKINE-SLLLCI  229 (323)
T ss_pred             -CCCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccc--eeEEEECC-CEEEEE
Confidence             3455 479999999999999999997643 34678999999999999987642 12333322  33333333 479999


Q ss_pred             cCCCCC---------------------------------CCceEEEEECCCCCCCCCcccC-Cchhhhhhhhh-HHHHHh
Q 010847          307 GGYNGK---------------------------------YNNEVFVMRLKPRDIPRPKIFQ-SPAAAAAAASV-TAAYAL  351 (499)
Q Consensus       307 GG~~~~---------------------------------~~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~-~~~~~~  351 (499)
                      ||.++.                                 ..+++++||+..++|...+.+| .++..++++.+ ..+|.+
T Consensus       230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~  309 (323)
T TIGR03548       230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSI  309 (323)
T ss_pred             CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEE
Confidence            998642                                 1367999999999999988765 34544434333 458888


Q ss_pred             cccccccC
Q 010847          352 AKSEKLDI  359 (499)
Q Consensus       352 ~~~~~~~~  359 (499)
                      +|+.+...
T Consensus       310 GG~~~pg~  317 (323)
T TIGR03548       310 NGELKPGV  317 (323)
T ss_pred             eccccCCc
Confidence            88766544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1e-32  Score=271.43  Aligned_cols=255  Identities=19%  Similarity=0.204  Sum_probs=190.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEc--CCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC---
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~---  105 (499)
                      +|||+||...    +.+++||+  .+++|..+++++.               .+|.+|++++++++||++||.....   
T Consensus        19 ~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~~~iYv~GG~~~~~~~~   79 (346)
T TIGR03547        19 KVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAIDGKLYVFGGIGKANSEG   79 (346)
T ss_pred             EEEEEccccC----CeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEECCEEEEEeCCCCCCCCC
Confidence            9999999732    57899996  6789999988741               3799999999999999999986432   


Q ss_pred             --CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEcCcCCCC--------------------------
Q 010847          106 --SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR--------------------------  156 (499)
Q Consensus       106 --~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~--------------------------  156 (499)
                        ...+++++||+.+++|+.++.  .+|.+|.+++++ +++++||++||.+...                          
T Consensus        80 ~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T TIGR03547        80 SPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF  157 (346)
T ss_pred             cceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence              135789999999999999962  467788888776 6899999999986320                          


Q ss_pred             -------CccCcEEEEECCCCeeEEeeecCCCCC-CCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEEEC--CCCceEe
Q 010847          157 -------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDL--QTNEWSQ  225 (499)
Q Consensus       157 -------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~--~~~~W~~  225 (499)
                             ...+++++||+.+++|+.+.   .+|. +|.+++++.+ +++||||||..... ...+++.|++  .+++|+.
T Consensus       158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~  233 (346)
T TIGR03547       158 SQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNK  233 (346)
T ss_pred             CCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeee
Confidence                   02478999999999999986   4564 6788888887 55699999975432 3456666654  6779998


Q ss_pred             cccCCCCCCcC-------cccEEEEECCEEEEEeCCCCCC-----------------CcceEEEEECCCCceEEeccCCC
Q 010847          226 PEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIVLNMTKLAWSILTSVKG  281 (499)
Q Consensus       226 ~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~~d~~~~~W~~l~~~~~  281 (499)
                      +   .++|.+|       .+|++++++++|||+||.+...                 ....+.+||+.+++|+.++.+|.
T Consensus       234 ~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       234 L---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             c---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence            7   4455543       4666788999999999975211                 12357899999999999987643


Q ss_pred             CCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEE
Q 010847          282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMR  321 (499)
Q Consensus       282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~  321 (499)
                          ++..+  ++++++  +.|||+||.+.  ...++++.|.
T Consensus       311 ----~~~~~--~~~~~~--~~iyv~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       311 ----GLAYG--VSVSWN--NGVLLIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             ----Cceee--EEEEcC--CEEEEEeccCCCCCEeeeEEEEE
Confidence                33332  233344  47999999863  4567787664

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=3.9e-32  Score=269.11  Aligned_cols=276  Identities=18%  Similarity=0.219  Sum_probs=202.0

Q ss_pred             CeEEcccCCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcC--CCceEEeeeCcccccCccccCCCCCCCCCc
Q 010847           14 LWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM   83 (499)
Q Consensus        14 ~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   83 (499)
                      .+..+|   ++|.+|..        +|||+||...    +.+++||+.  ++.|..+++++               ..+|
T Consensus        18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p---------------~~~r   75 (376)
T PRK14131         18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP---------------GGPR   75 (376)
T ss_pred             ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC---------------CCCc
Confidence            455666   67766663        9999999743    358999986  47899988763               1379


Q ss_pred             cceeEEEECCEEEEEcccCCCC-----CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCC-
Q 010847           84 SDHCMVKWGTKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR-  156 (499)
Q Consensus        84 ~~~s~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~-  156 (499)
                      .+|++++++++||++||.....     ...+++++||+.+++|+.++.  .+|.++.+|++++ .+++||++||.+... 
T Consensus        76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~  153 (376)
T PRK14131         76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF  153 (376)
T ss_pred             ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence            9999999999999999986411     135789999999999999973  3577788888777 899999999975310 


Q ss_pred             --------------------------------CccCcEEEEECCCCeeEEeeecCCCCC-CCccceEEEEcCcEEEEEcC
Q 010847          157 --------------------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG  203 (499)
Q Consensus       157 --------------------------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG  203 (499)
                                                      ...+++++||+.+++|+.+.   .+|. +|.+|+++.+ +++||++||
T Consensus       154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG  229 (376)
T PRK14131        154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLING  229 (376)
T ss_pred             HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEee
Confidence                                            12478999999999999876   4564 6778888777 556999999


Q ss_pred             CCCC-CCCCcEEE--EECCCCceEecccCCCCCCcCc--------ccEEEEECCEEEEEeCCCCCC--------------
Q 010847          204 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN--------------  258 (499)
Q Consensus       204 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~--------------  258 (499)
                      .... ...+++|.  ||+++++|+.+   .++|.+|.        ++.+++++++|||+||.+...              
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  306 (376)
T PRK14131        230 EIKPGLRTDAVKQGKFTGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE  306 (376)
T ss_pred             eECCCcCChhheEEEecCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence            6432 34456654  46688999997   45555553        233567899999999975321              


Q ss_pred             Cc---ceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEECCCCCCC
Q 010847          259 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       259 ~~---~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~~~W~  328 (499)
                      ..   ..+.+||+.++.|+.++.+|.    ++.+++  ++++++  .|||+||...  ...+++++|++..+.+.
T Consensus       307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~~~--av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAYGV--SVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             CCcceeehheEEecCCcccccCcCCC----CccceE--EEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence            11   235689999999999876643    344443  344444  6999999753  46789999998776543

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.9e-33  Score=261.61  Aligned_cols=296  Identities=25%  Similarity=0.435  Sum_probs=238.5

Q ss_pred             cCCCCCeEEccc-CCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCC
Q 010847            9 ELPYDLWVTLPV-SGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEV   79 (499)
Q Consensus         9 ~~~~~~W~~~~~-~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~   79 (499)
                      .+.--+|+++.. +|+.|.||.+        -|+||||-+ ....+.+++|+..++.|..-..-             ++.
T Consensus        13 ~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~Pavr-------------GDi   78 (830)
T KOG4152|consen   13 EKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVR-------------GDI   78 (830)
T ss_pred             hhcccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhc-------------CCC
Confidence            344558997765 4688999998        788999843 44678899999999999987766             566


Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeec----CCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVARGGHSVTLVGSRLIIFGGEDRS  155 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~lyv~GG~~~~  155 (499)
                      |+++..|.++..|.+||+|||....+.+.+++|.+-...=.|+++.+    .|.+|.||-+|+...++++.|+|||...+
T Consensus        79 PpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd  158 (830)
T KOG4152|consen   79 PPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND  158 (830)
T ss_pred             CCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc
Confidence            99999999999999999999998888888888877666666776653    57899999999999999999999997532


Q ss_pred             --------CCccCcEEEEECCCC----eeEEeeecCCCCCCCccceEEEEc-----CcEEEEEcCCCCCCCCCcEEEEEC
Q 010847          156 --------RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDL  218 (499)
Q Consensus       156 --------~~~~~~v~~yd~~t~----~W~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~  218 (499)
                              -.|+|++|++++.-+    .|..+...|..|.+|..|+++++.     ..++|||||.+ +.++.|+|.+|+
T Consensus       159 seDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~RLgDLW~Ldl  237 (830)
T KOG4152|consen  159 SEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GCRLGDLWTLDL  237 (830)
T ss_pred             ccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-cccccceeEEec
Confidence                    127899999998743    599999999999999999999983     23699999986 456899999999


Q ss_pred             CCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC--------------CCcceEEEEECCCCceEEecc--CCC-
Q 010847          219 QTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------------NGCQETIVLNMTKLAWSILTS--VKG-  281 (499)
Q Consensus       219 ~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------------~~~~~~~~~d~~~~~W~~l~~--~~~-  281 (499)
                      +|.+|.+++..+..|.||+-|+++.|+|++|||||....              ...+.+-.+|+.+..|..+-.  ... 
T Consensus       238 ~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~  317 (830)
T KOG4152|consen  238 DTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDN  317 (830)
T ss_pred             ceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccc
Confidence            999999999999999999999999999999999996311              114567789999999997632  222 


Q ss_pred             CCCCCCCCCceEEEEEcCceEEEEEcCCCCC--------CCceEEEEECC
Q 010847          282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK  323 (499)
Q Consensus       282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~  323 (499)
                      ..|.+|.||..+++  .  ..||+-.|.++.        ...|+|.+|..
T Consensus       318 tiPR~RAGHCAvAi--g--tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  318 TIPRARAGHCAVAI--G--TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             ccccccccceeEEe--c--cEEEEEeccchhhHhhccccchhhhhhhccc
Confidence            25777777754443  3  468888888652        35678888864

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=4.1e-32  Score=276.44  Aligned_cols=228  Identities=17%  Similarity=0.222  Sum_probs=190.3

Q ss_pred             ccCCCCCeEEcccCCCCCCcccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee
Q 010847            8 LELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC   87 (499)
Q Consensus         8 ~~~~~~~W~~~~~~~~~p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s   87 (499)
                      +++..+.|..+.... ....-...||++||.++....+.++.|||.+++|..+++++                .+|..++
T Consensus       251 ~~~~~~~~~~~~~~~-~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----------------~~r~~~~  313 (480)
T PHA02790        251 YPMNMDQIIDIFHMC-TSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----------------SPRLYAS  313 (480)
T ss_pred             cCCcccceeeccCCc-ceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----------------chhhcce
Confidence            345566677643111 01112238999999876667789999999999999999874                4899999


Q ss_pred             EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      +++++++||++||....    +++++||+.+++|..++   +||.+|.++++++++++||++||.+..   .+.+.+||+
T Consensus       314 ~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp  383 (480)
T PHA02790        314 GVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLP  383 (480)
T ss_pred             EEEECCEEEEECCcCCC----CceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeC
Confidence            99999999999997532    45999999999999997   899999999999999999999998643   467999999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCE
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  247 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  247 (499)
                      .+++|+.++   ++|.+|.++++++++ +.||++||.        +.+||+++++|+.+   +++|.+|..+++++++++
T Consensus       384 ~~~~W~~~~---~m~~~r~~~~~~~~~-~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~  448 (480)
T PHA02790        384 NHDQWQFGP---STYYPHYKSCALVFG-RRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNK  448 (480)
T ss_pred             CCCEEEeCC---CCCCccccceEEEEC-CEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCE
Confidence            999999986   477899999998884 569999983        67899999999997   578999999999999999


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      |||+||.+.....+.+..||+.+++|+...
T Consensus       449 IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        449 LLLIGGFYRGSYIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             EEEECCcCCCcccceEEEEECCCCeEEecC
Confidence            999999875555678999999999998653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=4e-31  Score=260.12  Aligned_cols=263  Identities=18%  Similarity=0.210  Sum_probs=196.6

Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEEC--CCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCC
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL--ETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR  156 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~  156 (499)
                      |.+|..+++++++++|||+||...     +++++||+  .+++|..++   +|| .+|..+++++++++||++||.....
T Consensus         5 p~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~   76 (346)
T TIGR03547         5 PVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKAN   76 (346)
T ss_pred             CccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence            568888888899999999999742     46899996  578999998   788 5899999999999999999986422


Q ss_pred             -----CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC------------------------
Q 010847          157 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------------------------  207 (499)
Q Consensus       157 -----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------------------------  207 (499)
                           ...+++++||+.+++|+.+..  .+|.+|.+++++...+++||++||.+..                        
T Consensus        77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T TIGR03547        77 SEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA  154 (346)
T ss_pred             CCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence                 246899999999999999863  3567777787763346679999998532                        


Q ss_pred             ----------CCCCcEEEEECCCCceEecccCCCCCC-cCcccEEEEECCEEEEEeCCCCCCC-cceEEEEE--CCCCce
Q 010847          208 ----------IFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNNG-CQETIVLN--MTKLAW  273 (499)
Q Consensus       208 ----------~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~d--~~~~~W  273 (499)
                                ..++++++||+.+++|+.+   +++|. +|+.|+++.++++|||+||...... ..+++.||  +.++.|
T Consensus       155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~---~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W  231 (346)
T TIGR03547       155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW  231 (346)
T ss_pred             HHhCCChhHcCccceEEEEECCCCceeEC---ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence                      1247899999999999997   56775 6899999999999999999754332 24566565  567799


Q ss_pred             EEeccCCCCCCCCCCCCc-eEEEEEcCceEEEEEcCCCCC------------------CCceEEEEECCCCCCCCCcccC
Q 010847          274 SILTSVKGRNPLASEGLS-VCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPRPKIFQ  334 (499)
Q Consensus       274 ~~l~~~~~~~p~~~~~~~-~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~~~~~~~W~~~~~~~  334 (499)
                      +.++.++........+.. +.+++++  +.|||+||.+..                  ....+.+||+..++|.....+|
T Consensus       232 ~~~~~m~~~r~~~~~~~~~~~a~~~~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp  309 (346)
T TIGR03547       232 NKLPPLPPPKSSSQEGLAGAFAGISN--GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP  309 (346)
T ss_pred             eecCCCCCCCCCccccccEEeeeEEC--CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence            999887643211111212 2233444  479999997521                  1135788999999999999999


Q ss_pred             Cchhhhhhhh-hHHHHHhcccccc
Q 010847          335 SPAAAAAAAS-VTAAYALAKSEKL  357 (499)
Q Consensus       335 ~~~~~~~~~~-~~~~~~~~~~~~~  357 (499)
                      .++..++.++ -..+|+++|....
T Consensus       310 ~~~~~~~~~~~~~~iyv~GG~~~~  333 (346)
T TIGR03547       310 QGLAYGVSVSWNNGVLLIGGENSG  333 (346)
T ss_pred             CCceeeEEEEcCCEEEEEeccCCC
Confidence            8877665543 4558888887543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=1e-31  Score=247.67  Aligned_cols=248  Identities=25%  Similarity=0.429  Sum_probs=201.6

Q ss_pred             CCCCCccceeEEEE--CCEEEEEcccCCCCC---CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcC
Q 010847           78 EVLPPMSDHCMVKW--GTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGG  151 (499)
Q Consensus        78 ~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG  151 (499)
                      .+|.||.++++++.  .+.|++|||-..+..   .++++|+||+.++.|..+... +.|+||++|.++++. |.||+|||
T Consensus        62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence            44678999988876  478999999654433   678999999999999998753 688899999999886 89999999


Q ss_pred             cCCCCC-----ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC----CCCCCcEEEEECCCCc
Q 010847          152 EDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----SIFFNDLHVLDLQTNE  222 (499)
Q Consensus       152 ~~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~----~~~~~~i~~~d~~~~~  222 (499)
                      --.+-.     ...++|.||+.+++|.++...| .|.||++|-|++... +|++|||.-.    ..++|++|+||+++-+
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdtyk  218 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDTYK  218 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEecccee
Confidence            643211     3579999999999999999865 799999999999955 5999999743    3579999999999999


Q ss_pred             eEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCC---------CCCcceEEEEECCC-----CceEEeccCCCCCCCCC
Q 010847          223 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN---------NNGCQETIVLNMTK-----LAWSILTSVKGRNPLAS  287 (499)
Q Consensus       223 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~---------~~~~~~~~~~d~~~-----~~W~~l~~~~~~~p~~~  287 (499)
                      |.++++.+..|.||++|.+++. .+.|||.||+..         ....+|+|.+++.+     -.|+.+.+ .+..|.+|
T Consensus       219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspR  297 (521)
T KOG1230|consen  219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPR  297 (521)
T ss_pred             eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCC
Confidence            9999988889999999999988 889999999842         22368999999988     57888865 44557788


Q ss_pred             CCCceEEEEEcCceEEEEEcCCC----------CCCCceEEEEECCCCCCCCCcc
Q 010847          288 EGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI  332 (499)
Q Consensus       288 ~~~~~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~~~~~~~W~~~~~  332 (499)
                      .|.+.+.+   .++..+.|||..          +.+.||+|.||+..+.|.....
T Consensus       298 sgfsv~va---~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql  349 (521)
T KOG1230|consen  298 SGFSVAVA---KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL  349 (521)
T ss_pred             CceeEEEe---cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence            88765433   233578899975          3468999999999999976643

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.98  E-value=1.3e-30  Score=258.23  Aligned_cols=243  Identities=22%  Similarity=0.345  Sum_probs=184.2

Q ss_pred             CccccCC--CCCeEEcccCCCCC-Ccccc--------eEEEEcCCCC------CcccCcEEEEEcCCCceEEeeeCcccc
Q 010847            5 SWHLELP--YDLWVTLPVSGARP-SPRYK--------KLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELD   67 (499)
Q Consensus         5 ~~~~~~~--~~~W~~~~~~~~~p-~~r~~--------~l~~~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~~~~~   67 (499)
                      .|.||+.  .+.|..++   ++| .+|.+        +|||+||...      ...++++++||+.+++|+.++++.   
T Consensus        52 ~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~---  125 (376)
T PRK14131         52 WYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS---  125 (376)
T ss_pred             EEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC---
Confidence            4667764  58999998   444 35655        8999999754      134789999999999999987521   


Q ss_pred             cCccccCCCCCCCCCccceeEEE-ECCEEEEEcccCCCC---------------------------------CCCceEEE
Q 010847           68 ADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIVRF  113 (499)
Q Consensus        68 ~~~~~~~~~~~~p~~r~~~s~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~~~~  113 (499)
                                  |.++.+|++++ .+++||++||.....                                 ...+++++
T Consensus       126 ------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~  193 (376)
T PRK14131        126 ------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS  193 (376)
T ss_pred             ------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence                        45677888877 899999999975310                                 01467999


Q ss_pred             EECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEE--EECCCCeeEEeeecCCCCCCCcc---
Q 010847          114 IDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYD---  187 (499)
Q Consensus       114 yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~--yd~~t~~W~~~~~~~~~p~~r~~---  187 (499)
                      ||+.+++|+.+.   ++|. +|.+++++.++++||++||........++++.  ||+.+++|..+.+   +|.+|.+   
T Consensus       194 YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~  267 (376)
T PRK14131        194 YDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGSSQ  267 (376)
T ss_pred             EECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC---CCCCCcCCcC
Confidence            999999999986   7775 78889999999999999997654333455554  5678899999874   4444432   


Q ss_pred             -----ceEEEEcCcEEEEEcCCCCCC-----------------CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC
Q 010847          188 -----HSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID  245 (499)
Q Consensus       188 -----~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~  245 (499)
                           +.++++ ++.|||+||.+...                 ....+++||+.+++|+.+   +++|.+|..++++.++
T Consensus       268 ~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~~  343 (376)
T PRK14131        268 EGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSWN  343 (376)
T ss_pred             CccceEeceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEeC
Confidence                 223445 55699999975321                 113467899999999987   6789999999999999


Q ss_pred             CEEEEEeCCCCC-CCcceEEEEECCCCceEE
Q 010847          246 ENWYIVGGGDNN-NGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       246 ~~l~v~GG~~~~-~~~~~~~~~d~~~~~W~~  275 (499)
                      ++|||+||.... ...++++.|++..+.++.
T Consensus       344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            999999997543 457899999988877654

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=3.8e-29  Score=254.68  Aligned_cols=210  Identities=14%  Similarity=0.180  Sum_probs=175.2

Q ss_pred             EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      .+..++.||++||..... ..++++.||+.+++|..++   +||.+|..+++++++++||++||.+.    .+++++||+
T Consensus       267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp  338 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFH  338 (480)
T ss_pred             eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence            345899999999986543 3678999999999999998   89999999999999999999999753    256999999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCE
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  247 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  247 (499)
                      .+++|..++   ++|.+|.+|+++++ ++.||++||....  .+.+.+||+.+++|+.+   ++++.+|..|++++++++
T Consensus       339 ~~n~W~~~~---~l~~~r~~~~~~~~-~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~---~~m~~~r~~~~~~~~~~~  409 (480)
T PHA02790        339 GDAAWVNMP---SLLKPRCNPAVASI-NNVIYVIGGHSET--DTTTEYLLPNHDQWQFG---PSTYYPHYKSCALVFGRR  409 (480)
T ss_pred             CCCeEEECC---CCCCCCcccEEEEE-CCEEEEecCcCCC--CccEEEEeCCCCEEEeC---CCCCCccccceEEEECCE
Confidence            999999886   57889999999988 5569999998543  36799999999999996   678999999999999999


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRD  326 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~  326 (499)
                      |||+||.        +.+||+.+++|+.+++++.    +|.++.  ++++++  .||++||.++. ..+.+.+||+..++
T Consensus       410 IYv~GG~--------~e~ydp~~~~W~~~~~m~~----~r~~~~--~~v~~~--~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        410 LFLVGRN--------AEFYCESSNTWTLIDDPIY----PRDNPE--LIIVDN--KLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             EEEECCc--------eEEecCCCCcEeEcCCCCC----CccccE--EEEECC--EEEEECCcCCCcccceEEEEECCCCe
Confidence            9999983        5789999999999987643    344443  344554  69999998643 35789999999999


Q ss_pred             CCCC
Q 010847          327 IPRP  330 (499)
Q Consensus       327 W~~~  330 (499)
                      |...
T Consensus       474 W~~~  477 (480)
T PHA02790        474 WNIW  477 (480)
T ss_pred             EEec
Confidence            9754

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.2e-30  Score=241.82  Aligned_cols=279  Identities=23%  Similarity=0.375  Sum_probs=224.3

Q ss_pred             CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCC
Q 010847           54 SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA  133 (499)
Q Consensus        54 t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~  133 (499)
                      --+|+.+....            +..|.+|.+|.++++..-|.+|||-+..-  .+.+.+||..+++|......|+.|.+
T Consensus        16 ~~rWrrV~~~t------------GPvPrpRHGHRAVaikELiviFGGGNEGi--iDELHvYNTatnqWf~PavrGDiPpg   81 (830)
T KOG4152|consen   16 VVRWRRVQQST------------GPVPRPRHGHRAVAIKELIVIFGGGNEGI--IDELHVYNTATNQWFAPAVRGDIPPG   81 (830)
T ss_pred             ccceEEEeccc------------CCCCCccccchheeeeeeEEEecCCcccc--hhhhhhhccccceeecchhcCCCCCc
Confidence            45799987654            67788999999999999999999966543  56799999999999999999999999


Q ss_pred             CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeee----cCCCCCCCccceEEEEcCcEEEEEcCCCCC--
Q 010847          134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV----TQTPPAPRYDHSAALHANRYLIVFGGCSHS--  207 (499)
Q Consensus       134 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--  207 (499)
                      ...|.++..+.+||+|||...-+.|+|++|.+......|+++.+    .|.+|.||-+|+...+++ +.|+|||..+.  
T Consensus        82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdse  160 (830)
T KOG4152|consen   82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSE  160 (830)
T ss_pred             hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEecccccccc
Confidence            99999999999999999998888899999999888889998876    477899999999999965 59999997432  


Q ss_pred             -------CCCCcEEEEECCCCc----eEecccCCCCCCcCcccEEEEE------CCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          208 -------IFFNDLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITI------DENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       208 -------~~~~~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                             .++||+|++++.-+.    |..+...+..|.+|..|+++++      ..++||+||.++- .+.|+|.+|+.+
T Consensus       161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~T  239 (830)
T KOG4152|consen  161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDT  239 (830)
T ss_pred             CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecce
Confidence                   479999999997553    9998888999999999999988      2379999997543 478999999999


Q ss_pred             CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC-----C----------CCCceEEEEECCCCCCCCCc----
Q 010847          271 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-----G----------KYNNEVFVMRLKPRDIPRPK----  331 (499)
Q Consensus       271 ~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-----~----------~~~~~~~~~~~~~~~W~~~~----  331 (499)
                      ..|.+. .+.+..|.+|.-|+...+    .+.||||||.-     +          +..+.+-++++++..|...-    
T Consensus       240 l~W~kp-~~~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~  314 (830)
T KOG4152|consen  240 LTWNKP-SLSGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTL  314 (830)
T ss_pred             eecccc-cccCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccc
Confidence            999984 566777888766664433    35799999962     0          23566778889888896642    


Q ss_pred             ---ccCCchhhhhhhhhHH-HHHhcc
Q 010847          332 ---IFQSPAAAAAAASVTA-AYALAK  353 (499)
Q Consensus       332 ---~~~~~~~~~~~~~~~~-~~~~~~  353 (499)
                         ..|.++..|+++.+.. +|+-+|
T Consensus       315 ed~tiPR~RAGHCAvAigtRlYiWSG  340 (830)
T KOG4152|consen  315 EDNTIPRARAGHCAVAIGTRLYIWSG  340 (830)
T ss_pred             cccccccccccceeEEeccEEEEEec
Confidence               2455555555555443 344343

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.79  E-value=6.3e-18  Score=154.98  Aligned_cols=267  Identities=17%  Similarity=0.243  Sum_probs=193.3

Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCC--CcEEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCC
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR  156 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~  156 (499)
                      |.+.-+-+-+.+++.+||-=|..+.     +.+..|+..  ..|+.++   ..| .+|.+..+++++++||+|||.....
T Consensus        34 Pvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~  105 (381)
T COG3055          34 PVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSV  105 (381)
T ss_pred             CccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCC
Confidence            4566666788889999998774333     267777654  5899998   666 5788889999999999999987543


Q ss_pred             C----ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC-------------------------
Q 010847          157 K----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS-------------------------  207 (499)
Q Consensus       157 ~----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------------------------  207 (499)
                      .    ..|++|.||+.+++|.++.+  ..|....++.++.+++..|+++||++..                         
T Consensus       106 ~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~  183 (381)
T COG3055         106 SSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH  183 (381)
T ss_pred             CCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence            2    57899999999999999987  4577888999999988789999998521                         


Q ss_pred             ---------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEEC--CCCceEE
Q 010847          208 ---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TKLAWSI  275 (499)
Q Consensus       208 ---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~--~~~~W~~  275 (499)
                               ....++..|++.+++|+.+-  ..+-.++++++.+.-++++.++-|.-... ....++++++  ...+|..
T Consensus       184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G--~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~  261 (381)
T COG3055         184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLG--ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK  261 (381)
T ss_pred             HhCCCHHHhcccccccccccccchhhhcC--cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence                     13557999999999999972  13445677766666677788887754333 2334566665  4568999


Q ss_pred             eccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC--------------------CCCCceEEEEECCCCCCCCCcccCC
Q 010847          276 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--------------------GKYNNEVFVMRLKPRDIPRPKIFQS  335 (499)
Q Consensus       276 l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--------------------~~~~~~~~~~~~~~~~W~~~~~~~~  335 (499)
                      ++++|.+......+..-...-.. .+.++|.||.+                    ..+.++||.||  .++|+.+..+|.
T Consensus       262 l~~lp~~~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~  338 (381)
T COG3055         262 LSDLPAPIGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ  338 (381)
T ss_pred             ccCCCCCCCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence            98877654333344433333222 35678888864                    13678899999  889999999998


Q ss_pred             chhhhhhh-hhHHHHHhcccccccCcc
Q 010847          336 PAAAAAAA-SVTAAYALAKSEKLDIPK  361 (499)
Q Consensus       336 ~~~~~~~~-~~~~~~~~~~~~~~~~~~  361 (499)
                      +....... ..+.+|.++|+.....+.
T Consensus       339 ~l~YG~s~~~nn~vl~IGGE~~~Gka~  365 (381)
T COG3055         339 GLAYGVSLSYNNKVLLIGGETSGGKAT  365 (381)
T ss_pred             CccceEEEecCCcEEEEccccCCCeee
Confidence            77655443 345688888887665543

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.73  E-value=6.1e-16  Score=142.05  Aligned_cols=257  Identities=18%  Similarity=0.249  Sum_probs=178.0

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCC--CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCC--
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS--  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~--  106 (499)
                      .+||-=|..+.    ..+.+|+..  ..|..++..+.               .+|.+..+++++++||+|||......  
T Consensus        48 ~~YVGLGs~G~----afy~ldL~~~~k~W~~~a~FpG---------------~~rnqa~~a~~~~kLyvFgG~Gk~~~~~  108 (381)
T COG3055          48 TVYVGLGSAGT----AFYVLDLKKPGKGWTKIADFPG---------------GARNQAVAAVIGGKLYVFGGYGKSVSSS  108 (381)
T ss_pred             eEEEEeccCCc----cceehhhhcCCCCceEcccCCC---------------cccccchheeeCCeEEEeeccccCCCCC
Confidence            66665453333    467888864  58999997753               48999999999999999999865443  


Q ss_pred             --CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCC-----------------------------
Q 010847          107 --DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDR-----------------------------  154 (499)
Q Consensus       107 --~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~-----------------------------  154 (499)
                        ..+++|+||+.+++|.++.+  ..|....+++++..++ +||++||.+.                             
T Consensus       109 ~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~  186 (381)
T COG3055         109 PQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD  186 (381)
T ss_pred             ceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence              56789999999999999986  5677788999999888 9999999752                             


Q ss_pred             ----CCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC-CCCCCCCcEEEEECC--CCceEecc
Q 010847          155 ----SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ--TNEWSQPE  227 (499)
Q Consensus       155 ----~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~--~~~W~~~~  227 (499)
                          +.....++..|++.++.|+.+..  .+-.++++. ++++.++.+.++-|. -..-++..+++++..  ..+|..+.
T Consensus       187 ~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~  263 (381)
T COG3055         187 KKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGS-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS  263 (381)
T ss_pred             CCHHHhcccccccccccccchhhhcCc--CcccCccCc-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence                11246789999999999988753  233456664 445556656666665 445567778888775  45699873


Q ss_pred             cCCCCCCc-------CcccEEEEECCEEEEEeCCCC--------------CC-----CcceEEEEECCCCceEEeccCCC
Q 010847          228 IKGDLVTG-------RAGHAGITIDENWYIVGGGDN--------------NN-----GCQETIVLNMTKLAWSILTSVKG  281 (499)
Q Consensus       228 ~~~~~p~~-------r~~~~~~~~~~~l~v~GG~~~--------------~~-----~~~~~~~~d~~~~~W~~l~~~~~  281 (499)
                         ++|.+       .+++-.-..++.++|.||.+-              +.     ..+++|+||  .+.|+.+..+|.
T Consensus       264 ---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~  338 (381)
T COG3055         264 ---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ  338 (381)
T ss_pred             ---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence               33333       333334455788888888431              11     245788888  999999988865


Q ss_pred             CCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEECCC
Q 010847          282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKP  324 (499)
Q Consensus       282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~  324 (499)
                      ..       ...+.+.. .+-++++||.+.  .....++.+....
T Consensus       339 ~l-------~YG~s~~~-nn~vl~IGGE~~~Gka~~~v~~l~~~g  375 (381)
T COG3055         339 GL-------AYGVSLSY-NNKVLLIGGETSGGKATTRVYSLSWDG  375 (381)
T ss_pred             Cc-------cceEEEec-CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence            21       22222222 346888899863  4566676665443

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.64  E-value=9.6e-17  Score=152.31  Aligned_cols=256  Identities=20%  Similarity=0.260  Sum_probs=184.4

Q ss_pred             CCCCCeEEcccCC-------CCCCcccc----------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccc
Q 010847           10 LPYDLWVTLPVSG-------ARPSPRYK----------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   72 (499)
Q Consensus        10 ~~~~~W~~~~~~~-------~~p~~r~~----------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~   72 (499)
                      |...+|..++..-       ..|..|.+          +||+.||+++.+.++++|.|....+.|+.+-.-.        
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t--------  307 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT--------  307 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence            4556899888665       57888887          9999999999999999999999999999987643        


Q ss_pred             cCCCCCCCCCccceeEEEECC--EEEEEcccCCCCC-----CCceEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE
Q 010847           73 DSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLV  142 (499)
Q Consensus        73 ~~~~~~~p~~r~~~s~~~~~~--~iyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~  142 (499)
                           -.|-.|+.|.+|..-.  +||+.|-+-+...     ..+++|+||..++.|..+.-.   .-.|.....|.|++.
T Consensus       308 -----~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd  382 (723)
T KOG2437|consen  308 -----EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD  382 (723)
T ss_pred             -----CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe
Confidence                 2477999999998865  9999998754432     456899999999999988732   236888999999999


Q ss_pred             CCE--EEEEcCcCCC--CCccCcEEEEECCCCeeEEeeec----C---CCCCCCccceEEEEc-CcEEEEEcCCCCCCCC
Q 010847          143 GSR--LIIFGGEDRS--RKLLNDVHFLDLETMTWDAVEVT----Q---TPPAPRYDHSAALHA-NRYLIVFGGCSHSIFF  210 (499)
Q Consensus       143 ~~~--lyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~~----~---~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~  210 (499)
                      +++  ||||||+.-.  ......+|.||.....|..+...    +   .....|.+|+|-.+. +..+|+|||.+...-+
T Consensus       383 ~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El  462 (723)
T KOG2437|consen  383 SEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL  462 (723)
T ss_pred             cCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence            987  9999997532  22467899999999999877541    0   113467788887664 5679999998776666


Q ss_pred             CcEEEEECCCCceEecc---c-CCCCCCcCcccEEEEE---CCEEEEEeCCCCC------CCcceEEEEECCCCceEEec
Q 010847          211 NDLHVLDLQTNEWSQPE---I-KGDLVTGRAGHAGITI---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       211 ~~i~~~d~~~~~W~~~~---~-~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~------~~~~~~~~~d~~~~~W~~l~  277 (499)
                      +-...|++....-..+.   . ...+.+.+....-+.+   .+.|.+..|..-.      +..+.+|+|++.++.|..+.
T Consensus       463 ~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~  542 (723)
T KOG2437|consen  463 NLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY  542 (723)
T ss_pred             eehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence            66677766544322221   0 1112222222222222   3467777775321      23578999999999998874


Q ss_pred             c
Q 010847          278 S  278 (499)
Q Consensus       278 ~  278 (499)
                      .
T Consensus       543 ~  543 (723)
T KOG2437|consen  543 K  543 (723)
T ss_pred             h
Confidence            3

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.62  E-value=6.7e-16  Score=146.66  Aligned_cols=271  Identities=17%  Similarity=0.225  Sum_probs=181.8

Q ss_pred             cCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECC--EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCC
Q 010847           52 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK  129 (499)
Q Consensus        52 ~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~  129 (499)
                      +.+-.|.++++.....      .+-...|..|.||.+|...+  .||++||+++... ..++|.|+...+.|+.+...+.
T Consensus       236 ey~~~W~~i~~~~~~~------~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~  308 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKG------DGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTE  308 (723)
T ss_pred             cccccccccCchhhcc------cccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCC
Confidence            4466799988753110      11136688999999998864  9999999998876 7889999999999999987667


Q ss_pred             CCCCCcceEEEEECC--EEEEEcCcCCCC-----CccCcEEEEECCCCeeEEeeec---CCCCCCCccceEEEEcCc-EE
Q 010847          130 VPVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHANR-YL  198 (499)
Q Consensus       130 ~p~~r~~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~~~-~l  198 (499)
                      .|..|.+|-|+..-.  +||+.|-+-+..     ..-.++|.||.+++.|..+.-.   ...|...+.|.|++.++. .+
T Consensus       309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i  388 (723)
T KOG2437|consen  309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI  388 (723)
T ss_pred             CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence            999999999998765  899999864332     1357899999999999988652   235889999999998653 68


Q ss_pred             EEEcCCCCC---CCCCcEEEEECCCCceEecccCC----C---CCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEE
Q 010847          199 IVFGGCSHS---IFFNDLHVLDLQTNEWSQPEIKG----D---LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       199 ~v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~~----~---~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      |||||..-.   ....-+|.||.....|..+...-    +   ....|-+|.+-..  ++.+|++||......++=+..|
T Consensus       389 yVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y  468 (723)
T KOG2437|consen  389 YVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSY  468 (723)
T ss_pred             EEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcc
Confidence            999997522   34567999999999998864311    1   1234666765554  5689999997665544444455


Q ss_pred             ECCCCceEEeccC--CCCCCCCCCCCceEEEEEcCceEEEEEcCCC-------CCCCceEEEEECCCCCCCC
Q 010847          267 NMTKLAWSILTSV--KGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPR  329 (499)
Q Consensus       267 d~~~~~W~~l~~~--~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~~~~~~~~~~~W~~  329 (499)
                      ++....=..+...  ......+..++..-++.....+.|.+.-|..       +...+.+|+|++..+.|..
T Consensus       469 ~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c  540 (723)
T KOG2437|consen  469 DIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC  540 (723)
T ss_pred             eeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence            5433221111110  0000111112222222222234555555553       2246778888888888844

>PLN02772 guanylate kinase

Probab=99.22  E-value=9e-11  Score=112.80  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=80.8

Q ss_pred             CCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC
Q 010847          128 GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS  207 (499)
Q Consensus       128 g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~  207 (499)
                      |-.+.++.+++++++++++|||||.+.....++.+++||..|.+|..+.+.|..|.+|.+|+++.+++++|+|+++.+..
T Consensus        19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~   98 (398)
T PLN02772         19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP   98 (398)
T ss_pred             CccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence            34556899999999999999999988766578999999999999999999999999999999999999999999986544


Q ss_pred             CCCCcEEEEECCCC
Q 010847          208 IFFNDLHVLDLQTN  221 (499)
Q Consensus       208 ~~~~~i~~~d~~~~  221 (499)
                        -.++|.+.+.|.
T Consensus        99 --~~~~w~l~~~t~  110 (398)
T PLN02772         99 --DDSIWFLEVDTP  110 (398)
T ss_pred             --ccceEEEEcCCH
Confidence              377899887764

>PF13964 Kelch_6: Kelch motif

Probab=99.20  E-value=4.6e-11  Score=81.21  Aligned_cols=50  Identities=30%  Similarity=0.346  Sum_probs=45.4

Q ss_pred             CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCC
Q 010847           82 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR  134 (499)
Q Consensus        82 ~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r  134 (499)
                      ||.+|++++++++|||+||........+++++||+.+++|+.++   +||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            58999999999999999999885556889999999999999998   899876

>PF13964 Kelch_6: Kelch motif

Probab=99.14  E-value=1.4e-10  Score=78.85  Aligned_cols=50  Identities=46%  Similarity=0.766  Sum_probs=44.5

Q ss_pred             CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       133 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      +|.+|++++++++||||||.......++++++||+.+++|+.++   ++|.||
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            58899999999999999999886567999999999999999997   466665

>PLN02772 guanylate kinase

Probab=99.02  E-value=2.4e-09  Score=103.08  Aligned_cols=87  Identities=22%  Similarity=0.323  Sum_probs=75.7

Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCc
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKL  158 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~  158 (499)
                      +.++.+|+++++++++|||||.+......+.+++||..|++|..+...|..|.+|.+|++++++ ++|+|+++....   
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            4489999999999999999998776545789999999999999999999999999999999995 699999876654   


Q ss_pred             cCcEEEEECCC
Q 010847          159 LNDVHFLDLET  169 (499)
Q Consensus       159 ~~~v~~yd~~t  169 (499)
                      ..++|.+.+.|
T Consensus        99 ~~~~w~l~~~t  109 (398)
T PLN02772         99 DDSIWFLEVDT  109 (398)
T ss_pred             ccceEEEEcCC
Confidence            35788888776

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.99  E-value=1.2e-09  Score=73.77  Aligned_cols=48  Identities=42%  Similarity=0.758  Sum_probs=42.3

Q ss_pred             CCEEEEEcCcC-CCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE
Q 010847          143 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH  193 (499)
Q Consensus       143 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~  193 (499)
                      +++||||||.+ .....+|++|.||+.+++|+.+   +++|.+|++|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            57999999998 4455789999999999999988   578999999999864

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.94  E-value=2e-09  Score=72.60  Aligned_cols=47  Identities=43%  Similarity=0.730  Sum_probs=42.1

Q ss_pred             CcEEEEEcCCC--CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE
Q 010847          195 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  244 (499)
Q Consensus       195 ~~~l~v~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  244 (499)
                      +++||||||.+  ....+|++|+||+.+++|+.+   +++|.+|++|++++|
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            35699999998  678899999999999999998   779999999999874

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.92  E-value=1.9e-09  Score=72.18  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee
Q 010847           82 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  125 (499)
Q Consensus        82 ~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  125 (499)
                      ||.+|++++++++||++||........+++++||+.+++|+.++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~   44 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP   44 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence            58999999999999999999985566899999999999999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.91  E-value=5e-08  Score=87.50  Aligned_cols=137  Identities=20%  Similarity=0.317  Sum_probs=95.7

Q ss_pred             CCCCCCcceEEEEEC---C---EEEEEcCcCCCCCccCcEEEEECCCCe--------eEEeeecCCCCCCCccceEEEEc
Q 010847          129 KVPVARGGHSVTLVG---S---RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       129 ~~p~~r~~~~~~~~~---~---~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~  194 (499)
                      -+|+-|+-+.+..-+   +   .-++.||.+.+...++.+|++.+.+..        ..+-...|+.|.+|++|++.++.
T Consensus        18 YLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~   97 (337)
T PF03089_consen   18 YLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH   97 (337)
T ss_pred             cCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence            356556554444312   2   355669999988888999999886543        23333358999999999997763


Q ss_pred             ---CcEEEEEcCCCCC--------------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC
Q 010847          195 ---NRYLIVFGGCSHS--------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN  257 (499)
Q Consensus       195 ---~~~l~v~GG~~~~--------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~  257 (499)
                         ....++|||..--              .+...|+.+|+.-+..+.-.. +.+..+.++|.+..-+|.+|++||..-.
T Consensus        98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~  176 (337)
T PF03089_consen   98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLE  176 (337)
T ss_pred             ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEcc
Confidence               3467899997411              245568999999888776432 5567788899999999999999997544


Q ss_pred             CC--cceEEEE
Q 010847          258 NG--CQETIVL  266 (499)
Q Consensus       258 ~~--~~~~~~~  266 (499)
                      ..  ...++++
T Consensus       177 sd~Rpp~l~rl  187 (337)
T PF03089_consen  177 SDSRPPRLYRL  187 (337)
T ss_pred             CCCCCCcEEEE
Confidence            33  3345544

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.88  E-value=5.6e-09  Score=70.44  Aligned_cols=46  Identities=33%  Similarity=0.580  Sum_probs=40.5

Q ss_pred             CCcceEEEEECCEEEEEcCc--CCCCCccCcEEEEECCCCeeEEeeec
Q 010847          133 ARGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT  178 (499)
Q Consensus       133 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~  178 (499)
                      +|.+|++++++++||||||+  .......+++++||+.+++|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            58999999999999999999  44445789999999999999998754

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.87  E-value=4.9e-09  Score=70.21  Aligned_cols=46  Identities=33%  Similarity=0.630  Sum_probs=41.6

Q ss_pred             CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeec
Q 010847          133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  178 (499)
Q Consensus       133 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~  178 (499)
                      ||.+|++++++++||++||.+.....++++++||+.+++|..++++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            5899999999999999999998666899999999999999999853

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.82  E-value=1.2e-08  Score=68.78  Aligned_cols=44  Identities=30%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             CccceeEEEECCEEEEEccc--CCCCCCCceEEEEECCCCcEEEee
Q 010847           82 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVME  125 (499)
Q Consensus        82 ~r~~~s~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~  125 (499)
                      ||.+|++++++++|||+||+  .......+++++||+.+.+|+.++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence            58999999999999999999  333346889999999999999997

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.80  E-value=6.9e-09  Score=70.12  Aligned_cols=44  Identities=39%  Similarity=0.699  Sum_probs=30.6

Q ss_pred             CCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847          133 ARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  176 (499)
Q Consensus       133 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  176 (499)
                      ||.+|+++.+ +++||||||.+.....++++++||+.+++|+++.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~   45 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP   45 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence            5899999998 5899999999887668999999999999999994

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.79  E-value=6.7e-09  Score=70.19  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCC
Q 010847           82 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP  131 (499)
Q Consensus        82 ~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p  131 (499)
                      ||.+|+++.+ +++||||||.+......+++++||+.+++|+.++   ++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence            5999999999 5899999999887656889999999999999995   666

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.78  E-value=8.4e-07  Score=80.75  Aligned_cols=177  Identities=14%  Similarity=0.141  Sum_probs=111.7

Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC----CeeEEeeecCCCCCCCc
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~~~~p~~r~  186 (499)
                      -..||+.+++++.+..   ..-..+...+..-++++++.||....   ...+..|++.+    ..|.+...  .|-.+|.
T Consensus        48 s~~yD~~tn~~rpl~v---~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV---QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccC---CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence            5669999999998863   22222233334457899999998653   45688888865    57987763  4778999


Q ss_pred             cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC-C-----CceEeccc-CCCCCCcCcccEEEEECCEEEEEeCCCCCCC
Q 010847          187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-T-----NEWSQPEI-KGDLVTGRAGHAGITIDENWYIVGGGDNNNG  259 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~-----~~W~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~  259 (499)
                      +.+++.+.|+.++|+||..     +..+.|-+. .     ..|..+.. ....+...+-+....-+++||+++..     
T Consensus       120 YpT~~~L~DG~vlIvGG~~-----~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-----  189 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSN-----NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-----  189 (243)
T ss_pred             cccceECCCCCEEEEeCcC-----CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence            9999999999999999986     222333332 1     11222211 11233344445555558899999873     


Q ss_pred             cceEEEEECCCCce-EEeccCCCCC-CCCCCCCceEEEEE------cCceEEEEEcC
Q 010847          260 CQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAII------EGEHHLVAFGG  308 (499)
Q Consensus       260 ~~~~~~~d~~~~~W-~~l~~~~~~~-p~~~~~~~~~~~~~------~~~~~l~v~GG  308 (499)
                        +..+||..++++ +.++.+|+.. ..+..|. ++...+      .-...|+|+||
T Consensus       190 --~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs-svmLPl~~~~~~~~~~evlvCGG  243 (243)
T PF07250_consen  190 --GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS-SVMLPLTDTPPNNYTAEVLVCGG  243 (243)
T ss_pred             --CcEEEeCCCCeEEeeCCCCCCCceecCCCcc-eEEecCccCCCCCCCeEEEEeCC
Confidence              457899999987 7888887652 1122222 222223      11456888887

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.72  E-value=5.4e-06  Score=74.71  Aligned_cols=180  Identities=22%  Similarity=0.265  Sum_probs=108.3

Q ss_pred             CCCCCCccceeEEEE-C------CEEEEEcccCCCCCCCceEEEEECCCCc--------EEEeecCCCCCCCCcceEEEE
Q 010847           77 LEVLPPMSDHCMVKW-G------TKLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTL  141 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~-~------~~iyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~  141 (499)
                      ++..||....+++.+ +      ..-++.||.+.+....+++|+....+..        .......|+.|.+|++|++.+
T Consensus        16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v   95 (337)
T PF03089_consen   16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV   95 (337)
T ss_pred             cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence            455566556666665 2      2355679988887767788888766543        223334589999999999987


Q ss_pred             EC--C--EEEEEcCcCCC-------------CCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC
Q 010847          142 VG--S--RLIIFGGEDRS-------------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  204 (499)
Q Consensus       142 ~~--~--~lyv~GG~~~~-------------~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  204 (499)
                      +.  +  -.++|||...-             -.+...|+.+|+.-+-.+.-.. ..+-.+.+.|.+.+- ++.+|++||.
T Consensus        96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-~D~VYilGGH  173 (337)
T PF03089_consen   96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-NDCVYILGGH  173 (337)
T ss_pred             EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec-CceEEEEccE
Confidence            73  2  48899997521             1245678999998776655432 245567788888776 5569999997


Q ss_pred             CC--CCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEE--E-CCEEEEEeCCCCCC
Q 010847          205 SH--SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT--I-DENWYIVGGGDNNN  258 (499)
Q Consensus       205 ~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~  258 (499)
                      .-  +.+...++++..+--.=+.+-...-++...+..++++  + .+..+|+||+....
T Consensus       174 sl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds  232 (337)
T PF03089_consen  174 SLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS  232 (337)
T ss_pred             EccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence            53  3444556666432110000000001222333222222  2 35688899986554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13854 Kelch_5: Kelch motif

Probab=98.67  E-value=5.9e-08  Score=62.83  Aligned_cols=41  Identities=39%  Similarity=0.686  Sum_probs=36.4

Q ss_pred             CCCCCcceEEEEECCEEEEEcCcCC-CCCccCcEEEEECCCC
Q 010847          130 VPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM  170 (499)
Q Consensus       130 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~  170 (499)
                      +|.+|.+|++++++++||||||... ....+|++|+||+.++
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            4889999999999999999999994 5667999999998763

>PF13854 Kelch_5: Kelch motif

Probab=98.66  E-value=5.8e-08  Score=62.86  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             CCCccceeEEEECCEEEEEcccCC-CCCCCceEEEEECCCC
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN  119 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~  119 (499)
                      |++|.+|++++++++|||+||... .....+++|+||+.++
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            779999999999999999999984 4446889999998764

>smart00612 Kelch Kelch domain

Probab=98.57  E-value=9.6e-08  Score=63.82  Aligned_cols=47  Identities=32%  Similarity=0.540  Sum_probs=40.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT   93 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~   93 (499)
                      +||++||..+...++++++||+.+++|+..+++                |.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----------------~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM----------------PTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC----------------CCccccceEEEeCC
Confidence            589999987767789999999999999999877                45899999888764

>smart00612 Kelch Kelch domain

Probab=98.47  E-value=2.6e-07  Score=61.68  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=40.3

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS  144 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~  144 (499)
                      +||++||..... ..+++++||+.+++|+..+   +||.+|..++++++++
T Consensus         1 ~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQ-RLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCc-eeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence            489999987533 3788999999999999987   8999999999988764

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.42  E-value=5.3e-05  Score=69.93  Aligned_cols=191  Identities=15%  Similarity=0.143  Sum_probs=107.2

Q ss_pred             ccccCCCCCeEEcccCCCCCC--cc--cc----------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCcc
Q 010847            6 WHLELPYDLWVTLPVSGARPS--PR--YK----------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   71 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~~~~~p~--~r--~~----------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~   71 (499)
                      ...||.+++|..||.+..++.  .+  .+          +|+.+.....+.....+.+|++.+++|+.+...+       
T Consensus        17 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~-------   89 (230)
T TIGR01640        17 VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSP-------   89 (230)
T ss_pred             EEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCC-------
Confidence            467999999999985332101  11  11          3333332211122357889999999999987432       


Q ss_pred             ccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE-eecCCCCCCCCc----ceEEEEECCEE
Q 010847           72 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVARG----GHSVTLVGSRL  146 (499)
Q Consensus        72 ~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~----~~~~~~~~~~l  146 (499)
                              +........+.++|.||.+........ ...+..||+.+.+|.. ++    +|..+.    ...++.++++|
T Consensus        90 --------~~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L  156 (230)
T TIGR01640        90 --------PHHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKL  156 (230)
T ss_pred             --------CCccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEE
Confidence                    111111226778999998875432211 1269999999999995 54    343322    34567778998


Q ss_pred             EEEcCcCCCCCccCcEEEEE-CCCCeeEEeeecCCCCCCCcc---ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          147 IIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       147 yv~GG~~~~~~~~~~v~~yd-~~t~~W~~~~~~~~~p~~r~~---~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .++.......  .-++|.++ -....|++.-.....+.+...   ......+++.|++.....   ...-+..||+.++
T Consensus       157 ~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~  230 (230)
T TIGR01640       157 AVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN  230 (230)
T ss_pred             EEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence            8876543211  23677775 335579876554321122111   122233455566655421   0113888888764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.39  E-value=0.00018  Score=66.41  Aligned_cols=201  Identities=13%  Similarity=0.106  Sum_probs=108.7

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCC---Ccce-EEEEEC----C-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCC
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  180 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~---r~~~-~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~  180 (499)
                      .+.++||.|++|..++.   ++.+   ...+ ....++    . +++.+....... ....+.+|++.+++|+.+...  
T Consensus        15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~--   88 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS--   88 (230)
T ss_pred             cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence            49999999999999973   2221   1111 111222    2 455554322111 245789999999999998742  


Q ss_pred             CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcC----cccEEEEECCEEEEEeCCC
Q 010847          181 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD  255 (499)
Q Consensus       181 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~  255 (499)
                      ++........+.+ ++.+|-+...........|..||+.+.+|.. +.    +|..+    ....++..+++|.++....
T Consensus        89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence            2221222224455 5557666533221111269999999999995 42    23222    2345667788888876532


Q ss_pred             CCCCcceEEEEE-CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          256 NNNGCQETIVLN-MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       256 ~~~~~~~~~~~d-~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .. ..-++|+++ -....|+++-.++...............+.+++..++++....   ..-+..||+.++
T Consensus       164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~  230 (230)
T TIGR01640       164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN  230 (230)
T ss_pred             CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence            21 124788886 4456799865554321111111122334445544455444211   113788888653

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.02  E-value=0.00026  Score=64.70  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             EEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCC----CceEecccCCCCCCcCc
Q 010847          162 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRA  237 (499)
Q Consensus       162 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~  237 (499)
                      -..||+.+++++.+..    +....+.+.+...|+.++++||...+  ...+-.|++.+    ..|.+..  ..+..+|.
T Consensus        48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~--~~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESP--NDMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECc--ccccCCCc
Confidence            5679999999988764    23444444455668889999998653  34677888765    5688763  35889999


Q ss_pred             ccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCC------CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847          238 GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK------LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  310 (499)
Q Consensus       238 ~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~------~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~  310 (499)
                      +.++..+ +++++|+||....     .+.|-+..      ..|..+.......+...  .-...+..++  .|++++.. 
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nl--YP~~~llPdG--~lFi~an~-  189 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNL--YPFVHLLPDG--NLFIFANR-  189 (243)
T ss_pred             cccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcccc--CceEEEcCCC--CEEEEEcC-
Confidence            9998888 6789999997622     23333321      11222222111111111  1122233333  58888874 


Q ss_pred             CCCCceEEEEECCCCCC-CCCcccCC
Q 010847          311 GKYNNEVFVMRLKPRDI-PRPKIFQS  335 (499)
Q Consensus       311 ~~~~~~~~~~~~~~~~W-~~~~~~~~  335 (499)
                           +..+||.+.+++ ...+.+|.
T Consensus       190 -----~s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  190 -----GSIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             -----CcEEEeCCCCeEEeeCCCCCC
Confidence                 456789888866 45555543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.71  E-value=0.04  Score=50.77  Aligned_cols=211  Identities=18%  Similarity=0.221  Sum_probs=115.4

Q ss_pred             cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCcccee--EEEECCEEEEEcccCCCCCCCceEEEEECCCCc-
Q 010847           46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-  120 (499)
Q Consensus        46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-  120 (499)
                      .+.++|+.+++  |+.-...                  +..+..  .+..++.+|+..+       ...++.+|+.+++ 
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~   58 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP------------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV   58 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS------------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred             EEEEEECCCCCEEEEEECCC------------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence            57889998875  7773211                  122222  4447899998842       3459999998885 


Q ss_pred             -EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEE-eeecCCCCCCCccceEEEEcCc
Q 010847          121 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDA-VEVTQTPPAPRYDHSAALHANR  196 (499)
Q Consensus       121 -W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~-~~~~~~~p~~r~~~~~~~~~~~  196 (499)
                       |+.-.     +.+. ....+..++.+|+..+       .+.++.+|..++  .|+. ...  ..+.+........+.++
T Consensus        59 ~W~~~~-----~~~~-~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   59 LWRFDL-----PGPI-SGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             EEEEEC-----SSCG-GSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETT
T ss_pred             EEEeec-----cccc-cceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecC
Confidence             54442     2221 2224677889988762       236999998776  5884 432  11222222233333366


Q ss_pred             EEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCc-----CcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847          197 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG-----RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       197 ~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                      .+|+...      ...++.+|+++++  |......+....+     ......+..++.+|+..+..      .+..+|..
T Consensus       124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~  191 (238)
T PF13360_consen  124 RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLA  191 (238)
T ss_dssp             EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETT
T ss_pred             EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECC
Confidence            4555442      2479999999876  7774211111110     01123333357777775522      25666999


Q ss_pred             CCc--eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          270 KLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       270 ~~~--W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      ++.  |+. + +..          ........++.||+.. .+    ..++.+|+++.
T Consensus       192 tg~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~~----~~l~~~d~~tG  232 (238)
T PF13360_consen  192 TGEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-SD----GRLYALDLKTG  232 (238)
T ss_dssp             TTEEEEEE-C-SS-----------ECECEECCCTEEEEEE-TT----TEEEEEETTTT
T ss_pred             CCCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-CC----CEEEEEECCCC
Confidence            887  743 2 221          1111222234666655 32    37899998765

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.30  E-value=0.23  Score=49.80  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=96.7

Q ss_pred             cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--E
Q 010847           46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C  121 (499)
Q Consensus        46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W  121 (499)
                      .++.||+.+++  |+.-...+.              ...+...+.++.++.+|+..+       ...++.+|+.+++  |
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~--------------~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W  229 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPS--------------LTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIW  229 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCc--------------ccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhh
Confidence            58999999886  776432110              011222334455677776443       2348888988874  7


Q ss_pred             EEeec--CCCCCC---CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEEEEc
Q 010847          122 GVMET--SGKVPV---ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       122 ~~~~~--~g~~p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~  194 (499)
                      +....  .+....   .....+-++.++.+|+.+.       ...++++|+.+++  |+...  +.   .   ...+ +.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~--~~---~---~~~~-~~  293 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQIVWKREY--GS---V---NDFA-VD  293 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCEEEeecC--CC---c---cCcE-EE
Confidence            64321  000000   0112334556888887643       2368999998864  86532  11   1   1123 34


Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ++.+|+....      ..++.+|+.+++  |+...     ...+...+.++.++.+|+... +     -.++.+|..+++
T Consensus       294 ~~~vy~~~~~------g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~  356 (394)
T PRK11138        294 GGRIYLVDQN------DRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGR  356 (394)
T ss_pred             CCEEEEEcCC------CeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCC
Confidence            6668886532      469999998775  86521     112223344556888876532 1     157888988875

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.04  E-value=0.044  Score=51.59  Aligned_cols=123  Identities=14%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             EEEcccCCCCC-CCceEEEEECCCCcEEEeecCCCCCCCCcce--EEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           96 LILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVARGGH--SVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        96 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~--~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ||-|-+...+. .-..+..||+.+.+|..+..   -   ..+.  .+... +++||+.|-....+.....+-.||..+.+
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            44443433322 34569999999999999862   2   2222  23333 66788887665544235578999999999


Q ss_pred             eEEeeec--CCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847          172 WDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  228 (499)
Q Consensus       172 W~~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  228 (499)
                      |..+...  ..+|.+....+....+...+++.|...  .-..-+..||  ..+|..+..
T Consensus        76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             eeecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence            9888762  245656544444333444577766642  2233466664  678999853

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.03  E-value=0.017  Score=54.27  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             EEcC-cCCCCC-ccCcEEEEECCCCeeEEeeecCCCCCCCccc--eEEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCc
Q 010847          148 IFGG-EDRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYDH--SAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNE  222 (499)
Q Consensus       148 v~GG-~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~  222 (499)
                      ++|| +...+. .++.+..||+.+.+|..+..      ...+.  ++...+++.+|+.|-..... ....+-.||.++.+
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCC------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            3444 443332 47889999999999998864      12222  22334566677777544333 45668999999999


Q ss_pred             eEecccC--CCCCCcCcccEEEEEC-CEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          223 WSQPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       223 W~~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      |+.+...  ...|.+.........+ +.+++.|..  .....-+..|  ...+|..+..
T Consensus        76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence            9988542  2345443222222223 356666654  2223345555  5678988765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.98  E-value=0.29  Score=49.16  Aligned_cols=155  Identities=16%  Similarity=0.117  Sum_probs=85.5

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCC--CCC---CCCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g--~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +.++.+++||+.+..       ..++.||..++  .|+.-....  ..+   .++...+.+..++++|+.+.       .
T Consensus        64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~  129 (394)
T PRK11138         64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------K  129 (394)
T ss_pred             ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------C
Confidence            456779999987642       24899998876  486543110  000   11223345667888887432       2


Q ss_pred             CcEEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCc
Q 010847          160 NDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG  235 (499)
Q Consensus       160 ~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~  235 (499)
                      ..+++||..|+  .|+.-.. +    +. ..+.+. .++.+|+..+      .+.++.||+.+++  |+.... .+....
T Consensus       130 g~l~ald~~tG~~~W~~~~~-~----~~-~ssP~v-~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~-~~~~~~  195 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVA-G----EA-LSRPVV-SDGLVLVHTS------NGMLQALNESDGAVKWTVNLD-VPSLTL  195 (394)
T ss_pred             CEEEEEECCCCCCcccccCC-C----ce-ecCCEE-ECCEEEEECC------CCEEEEEEccCCCEeeeecCC-CCcccc
Confidence            36999999776  4865431 1    11 112223 3665666433      2369999998876  877421 111111


Q ss_pred             CcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc--eEE
Q 010847          236 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI  275 (499)
Q Consensus       236 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~  275 (499)
                      +...+-++.++.+|+..+ +     ..++.+|+.++.  |+.
T Consensus       196 ~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        196 RGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhhee
Confidence            222233444666655432 2     257888887764  764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.97  E-value=0.47  Score=47.23  Aligned_cols=174  Identities=14%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--E
Q 010847           46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C  121 (499)
Q Consensus        46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W  121 (499)
                      .++.||+.++.  |+.....                   ....+.+..++.+|+..+       ...++.+|+.++.  |
T Consensus       116 ~l~ald~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       116 EVIALDAEDGKELWRAKLSS-------------------EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLW  169 (377)
T ss_pred             EEEEEECCCCcEeeeeccCc-------------------eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceee
Confidence            68999998775  7653211                   112233456777777543       2349999998774  7


Q ss_pred             EEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecC--CCCCCC---ccceEEEE
Q 010847          122 GVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ--TPPAPR---YDHSAALH  193 (499)
Q Consensus       122 ~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~--~~p~~r---~~~~~~~~  193 (499)
                      +....  ..+. .+...+.+..++.+| +|..      ...++.+|+.++  .|+.-....  .....+   ...+. .+
T Consensus       170 ~~~~~--~~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p-~~  239 (377)
T TIGR03300       170 TYSRV--TPALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP-VV  239 (377)
T ss_pred             EEccC--CCceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc-EE
Confidence            65431  1111 122234455566554 4432      235889998776  475432110  000000   11122 23


Q ss_pred             cCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          194 ANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       194 ~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      .++.+|+.+..      ..++.||+.+++  |..-.     +   ...+.+..++.+|+...      ...++.+|..++
T Consensus       240 ~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG  299 (377)
T TIGR03300       240 DGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA------DGVVVALDRRSG  299 (377)
T ss_pred             ECCEEEEEEcC------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC------CCeEEEEECCCC
Confidence            36667765432      369999998765  76521     1   11233456788887642      125889998776


Q ss_pred             c--eEE
Q 010847          272 A--WSI  275 (499)
Q Consensus       272 ~--W~~  275 (499)
                      .  |+.
T Consensus       300 ~~~W~~  305 (377)
T TIGR03300       300 SELWKN  305 (377)
T ss_pred             cEEEcc
Confidence            3  654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.97  E-value=0.0063  Score=64.47  Aligned_cols=98  Identities=19%  Similarity=0.303  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE  462 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e  462 (499)
                      +..|+.+.+.+...++..++...+|+.++..+...-.....+++++++++++++.++..|.+.   .++..+.++.+|++
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr  496 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR  496 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            445666666666666667777777777766666655556666777777777666666655544   33444455566666


Q ss_pred             HHHHHHhHHHHHHHHHHhhcc
Q 010847          463 VQILRQQKSAFEQEMERATSV  483 (499)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~  483 (499)
                      +...+++++.+|.+|.+.+.+
T Consensus       497 L~eE~~~R~~lEkQL~eErk~  517 (697)
T PF09726_consen  497 LAEERRQRASLEKQLQEERKA  517 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666544433

; GO: 0016021 integral to membrane

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.035  Score=53.95  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      -|.+++|+++.-   .+|..|=.++.--+---+..               .|......+.-|....+++|..      .-
T Consensus       226 plllvaG~d~~l---rifqvDGk~N~~lqS~~l~~---------------fPi~~a~f~p~G~~~i~~s~rr------ky  281 (514)
T KOG2055|consen  226 PLLLVAGLDGTL---RIFQVDGKVNPKLQSIHLEK---------------FPIQKAEFAPNGHSVIFTSGRR------KY  281 (514)
T ss_pred             ceEEEecCCCcE---EEEEecCccChhheeeeecc---------------CccceeeecCCCceEEEecccc------eE
Confidence            678888875442   45666655555221111111               1222222233344377777753      34


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      +|.||+.+.+-.++.....++.+-.....+...+.++++-|..+      -|+.+...|+.|..--   .++.....++.
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~~f  352 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDFTF  352 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeEEE
Confidence            99999999998888643334433333334444555666666432      4788888888884321   12323344444


Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      .. ++..|++.||++      .||++|+.++..
T Consensus       353 sS-dsk~l~~~~~~G------eV~v~nl~~~~~  378 (514)
T KOG2055|consen  353 SS-DSKELLASGGTG------EVYVWNLRQNSC  378 (514)
T ss_pred             ec-CCcEEEEEcCCc------eEEEEecCCcce
Confidence            33 346788888864      799999988853

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=96.91  E-value=0.24  Score=45.85  Aligned_cols=188  Identities=15%  Similarity=0.062  Sum_probs=105.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEc-----CCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDL-----RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~-----~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~  105 (499)
                      ++|++.|..+.    .++.|.-     ..+.....-.+                |-+-.|...++++|.+|+--.     
T Consensus        32 ~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~L----------------p~~~~GtG~vVYngslYY~~~-----   86 (250)
T PF02191_consen   32 KIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKL----------------PYPWQGTGHVVYNGSLYYNKY-----   86 (250)
T ss_pred             CEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEE----------------eceeccCCeEEECCcEEEEec-----
Confidence            89999887654    3444422     23333333222                335677788889999998644     


Q ss_pred             CCCceEEEEECCCCcEE---EeecCCC---CCCCCcc---eEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847          106 SDSMIVRFIDLETNLCG---VMETSGK---VPVARGG---HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  176 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~W~---~~~~~g~---~p~~r~~---~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  176 (499)
                       ..+.+..||+.++.-.   .++..+.   .|....+   .-+++.++-|+++-....+.. .-.+..+|+.+..-...-
T Consensus        87 -~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw  164 (250)
T PF02191_consen   87 -NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTW  164 (250)
T ss_pred             -CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEE
Confidence             2566999999998755   3332111   2222222   234444566777755443321 224566777664322221


Q ss_pred             ecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC---CEEEEE
Q 010847          177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID---ENWYIV  251 (499)
Q Consensus       177 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~---~~l~v~  251 (499)
                      .+ ..+.+..+.+.+++ + .||++...+... ..-.+.||+.+++=..+.  -+++.+-..++++..+   ..||+.
T Consensus       165 ~T-~~~k~~~~naFmvC-G-vLY~~~s~~~~~-~~I~yafDt~t~~~~~~~--i~f~~~~~~~~~l~YNP~dk~LY~w  236 (250)
T PF02191_consen  165 NT-SYPKRSAGNAFMVC-G-VLYATDSYDTRD-TEIFYAFDTYTGKEEDVS--IPFPNPYGNISMLSYNPRDKKLYAW  236 (250)
T ss_pred             Ee-ccCchhhcceeeEe-e-EEEEEEECCCCC-cEEEEEEECCCCceecee--eeeccccCceEeeeECCCCCeEEEE
Confidence            11 24445555554444 4 488877654332 344689999888766553  2445555556666664   468877

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.89  E-value=0.025  Score=47.35  Aligned_cols=11  Identities=27%  Similarity=0.338  Sum_probs=4.3

Q ss_pred             hhhhhHHHHHH
Q 010847          436 RSRCFKLEAQI  446 (499)
Q Consensus       436 ~~~~~~~~~~~  446 (499)
                      .++++.|+.++
T Consensus        79 ~rriq~LEeel   89 (143)
T PF12718_consen   79 NRRIQLLEEEL   89 (143)
T ss_pred             HhhHHHHHHHH
Confidence            33333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.88  E-value=0.42  Score=45.29  Aligned_cols=188  Identities=21%  Similarity=0.149  Sum_probs=89.8

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      ++|+.++.+     ..+.+||+.+++-...-...               ..++ +.+...-+..+|+.++.      .+.
T Consensus         2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~---------------~~~~-~l~~~~dg~~l~~~~~~------~~~   54 (300)
T TIGR03866         2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG---------------QRPR-GITLSKDGKLLYVCASD------SDT   54 (300)
T ss_pred             cEEEEecCC-----CEEEEEECCCCceEEEEECC---------------CCCC-ceEECCCCCEEEEEECC------CCe
Confidence            467777643     36889999887643322211               0111 11111223457777653      234


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      +..||+.++.....-..  .+.+   ..++.. + +.+|+.++.      .+.+..||+.+.+-...-     +.+....
T Consensus        55 v~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~~  118 (300)
T TIGR03866        55 IQVIDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEPE  118 (300)
T ss_pred             EEEEECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCcc
Confidence            88999988876442211  1111   122222 3 356665442      236899999875422111     1111123


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEEC
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  268 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  268 (499)
                      +++...++.+++++....    +.++.||..+..-......+.    +..+....-++..+++++..+    ..+.+||+
T Consensus       119 ~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~  186 (300)
T TIGR03866       119 GMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDV  186 (300)
T ss_pred             eEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEc
Confidence            343444555666654321    346677876654322100011    111222222444444444222    25888998


Q ss_pred             CCCce
Q 010847          269 TKLAW  273 (499)
Q Consensus       269 ~~~~W  273 (499)
                      .+...
T Consensus       187 ~~~~~  191 (300)
T TIGR03866       187 ATRKV  191 (300)
T ss_pred             Cccee
Confidence            87653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.82  E-value=0.4  Score=44.04  Aligned_cols=179  Identities=18%  Similarity=0.218  Sum_probs=102.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .+|+..      ....+++||+.+++  |+.-..                   .+.....+..++.||+..+       .
T Consensus        38 ~v~~~~------~~~~l~~~d~~tG~~~W~~~~~-------------------~~~~~~~~~~~~~v~v~~~-------~   85 (238)
T PF13360_consen   38 RVYVAS------GDGNLYALDAKTGKVLWRFDLP-------------------GPISGAPVVDGGRVYVGTS-------D   85 (238)
T ss_dssp             EEEEEE------TTSEEEEEETTTSEEEEEEECS-------------------SCGGSGEEEETTEEEEEET-------T
T ss_pred             EEEEEc------CCCEEEEEECCCCCEEEEeecc-------------------ccccceeeecccccccccc-------e
Confidence            666663      23479999998886  555432                   1222225777899988763       2


Q ss_pred             ceEEEEECCCC--cEEE-eecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCC
Q 010847          109 MIVRFIDLETN--LCGV-METSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPP  182 (499)
Q Consensus       109 ~~~~~yd~~t~--~W~~-~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p  182 (499)
                      +.++.+|..++  .|+. ...  ..+.+ ......+..++.+|+...       ...++++|+.+++  |.....   .|
T Consensus        86 ~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~---~~  153 (238)
T PF13360_consen   86 GSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG---EP  153 (238)
T ss_dssp             SEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS---TT
T ss_pred             eeeEecccCCcceeeeecccc--ccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC---CC
Confidence            25999998877  5884 432  12222 233344445777777643       3469999998875  665432   11


Q ss_pred             CCCc-------cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeC
Q 010847          183 APRY-------DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGG  253 (499)
Q Consensus       183 ~~r~-------~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG  253 (499)
                      ....       ..+...+.++.+|+..+.+      .+..+|..++.  |+.. ...      ........++.+|+.. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~-  219 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS-  219 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-
T ss_pred             CCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe-
Confidence            1111       1123334455788876643      26677999987  8543 111      1111334466777765 


Q ss_pred             CCCCCCcceEEEEECCCCc
Q 010847          254 GDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       254 ~~~~~~~~~~~~~d~~~~~  272 (499)
                      .     ...++.+|+.+++
T Consensus       220 ~-----~~~l~~~d~~tG~  233 (238)
T PF13360_consen  220 S-----DGRLYALDLKTGK  233 (238)
T ss_dssp             T-----TTEEEEEETTTTE
T ss_pred             C-----CCEEEEEECCCCC
Confidence            2     1368999998875

...

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.80  E-value=0.044  Score=53.62  Aligned_cols=127  Identities=18%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCcc----CcEEE--
Q 010847           91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHF--  164 (499)
Q Consensus        91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~--  164 (499)
                      .+++|+..+..   .    ...+||+.+..-...+   .++.+...-.++.++++||++..........    ..++.  
T Consensus        75 ~gskIv~~d~~---~----~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~  144 (342)
T PF07893_consen   75 HGSKIVAVDQS---G----RTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV  144 (342)
T ss_pred             cCCeEEEEcCC---C----CeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence            58999988654   1    2889999999877665   4555666667788899999998764332110    03333  


Q ss_pred             EE--------CCCCeeEEeeecCCCCCCCcc-------ceEEEEcCcEEEE-EcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847          165 LD--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI  228 (499)
Q Consensus       165 yd--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~  228 (499)
                      |+        .....|..+++   +|.....       .+-+++++.+|+| .-|..     .-.|.||..+.+|+.+  
T Consensus       145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~--  214 (342)
T PF07893_consen  145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH--  214 (342)
T ss_pred             cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence            33        23346777653   2322222       1222334566776 33321     2389999999999997  


Q ss_pred             CCCCCCcCcc
Q 010847          229 KGDLVTGRAG  238 (499)
Q Consensus       229 ~~~~p~~r~~  238 (499)
                       +++..|-.+
T Consensus       215 -GdW~LPF~G  223 (342)
T PF07893_consen  215 -GDWMLPFHG  223 (342)
T ss_pred             -cceecCcCC
Confidence             666555444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.54  E-value=0.021  Score=60.67  Aligned_cols=15  Identities=20%  Similarity=0.206  Sum_probs=8.4

Q ss_pred             EEEEcCCCceEEeee
Q 010847           48 QVFDLRSLAWSNLRL   62 (499)
Q Consensus        48 ~~yd~~t~~W~~~~~   62 (499)
                      |+|--.+-+|+.++.
T Consensus       130 ~~~~e~~~~~~~~~~  144 (697)
T PF09726_consen  130 FVYVEASVRLKDLKS  144 (697)
T ss_pred             HHHHHHHHhhcccCC
Confidence            455555556666554

; GO: 0016021 integral to membrane

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.44  E-value=1.1  Score=44.52  Aligned_cols=170  Identities=17%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cE
Q 010847           46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC  121 (499)
Q Consensus        46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W  121 (499)
                      .++.+|+.+++  |+.....+.              ...+...+.+..++.+| +|..      ...++.+|+.++  .|
T Consensus       156 ~l~a~d~~tG~~~W~~~~~~~~--------------~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       156 RLTALDAATGERLWTYSRVTPA--------------LTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLW  214 (377)
T ss_pred             eEEEEEcCCCceeeEEccCCCc--------------eeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEee
Confidence            58999998875  765332110              00122234455566555 4432      124889998877  47


Q ss_pred             EEeecCCCCCCC--------CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEE
Q 010847          122 GVMETSGKVPVA--------RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAA  191 (499)
Q Consensus       122 ~~~~~~g~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~  191 (499)
                      +...   ..|..        ....+.+..++.+|+...       ...+++||+.+++  |..-.     + .  ..+.+
T Consensus       215 ~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~-----~-~--~~~p~  276 (377)
T TIGR03300       215 EQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA-----S-S--YQGPA  276 (377)
T ss_pred             eecc---ccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc-----C-C--ccCce
Confidence            5432   11111        112233445778887543       2359999998764  75431     1 1  11222


Q ss_pred             EEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847          192 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       192 ~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                       +.++++|+...      ...++.+|..++.  |+...    +. .+...+.+..++.+|+.. .+     ..++.+|..
T Consensus       277 -~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~----~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~~d~~  338 (377)
T TIGR03300       277 -VDDNRLYVTDA------DGVVVALDRRSGSELWKNDE----LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHWLSRE  338 (377)
T ss_pred             -EeCCEEEEECC------CCeEEEEECCCCcEEEcccc----cc-CCccccCEEECCEEEEEe-CC-----CEEEEEECC
Confidence             34666777643      2369999998764  76521    11 122223344577777642 11     258888987


Q ss_pred             CCc
Q 010847          270 KLA  272 (499)
Q Consensus       270 ~~~  272 (499)
                      +++
T Consensus       339 tG~  341 (377)
T TIGR03300       339 DGS  341 (377)
T ss_pred             CCC
Confidence            764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.36  E-value=0.56  Score=45.92  Aligned_cols=107  Identities=17%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC----ceEEEE--EC--
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS----MIVRFI--DL--  116 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d~--  116 (499)
                      ..+.+||..+..-...|.+..                +...-.++.++++||++..........    ..++.+  ++  
T Consensus        86 ~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~  149 (342)
T PF07893_consen   86 GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPP  149 (342)
T ss_pred             CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccc
Confidence            348999999998887776542                333346677799999998765442210    044444  31  


Q ss_pred             ------CCCcEEEeecCCCCCCCCcc-------eEEEEE-CCEEEE-EcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847          117 ------ETNLCGVMETSGKVPVARGG-------HSVTLV-GSRLII-FGGEDRSRKLLNDVHFLDLETMTWDAVE  176 (499)
Q Consensus       117 ------~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~lyv-~GG~~~~~~~~~~v~~yd~~t~~W~~~~  176 (499)
                            ..-.|..++   ++|.....       .+.+++ +..||| .-|..      ...|+||+.+.+|+.+.
T Consensus       150 ~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~G  215 (342)
T PF07893_consen  150 DDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHG  215 (342)
T ss_pred             ccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeecc
Confidence                  122577775   44433222       223334 568888 33321      24899999999999884

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.27  E-value=1.8  Score=45.13  Aligned_cols=123  Identities=13%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCC--CCC---CCCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g--~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +.++.++.||+....       ..++.+|..|+  .|+.-....  ..+   ........+..+++||+...       .
T Consensus        64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------d  129 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------D  129 (527)
T ss_pred             CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------C
Confidence            345678999986542       23899998886  476543110  001   00112234556778776322       2


Q ss_pred             CcEEEEECCCCe--eEEeeecCCCCCCC-ccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          160 NDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       160 ~~v~~yd~~t~~--W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ..++++|..|++  |+.-..  ...... ...+.++. ++.+|+-...........++.||.++++  |+.-
T Consensus       130 g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       130 ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            359999998875  764321  111111 11222334 5545553222222234579999998876  8764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.27  E-value=1.5  Score=44.19  Aligned_cols=148  Identities=12%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.++.-..+.....                .....+...-++.|++.....+    ...++.+|+.++....+
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG----------------MNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEEC
Confidence            468999999887665543211                1111222222455666543222    23599999999887776


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcC
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  203 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG  203 (499)
                      ...   +...... ....++ +|++......    ...+|.+|+.+..+..+...+     ..........++..+++..
T Consensus       274 ~~~---~~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       274 TNG---PGIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             CCC---CCCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEE
Confidence            521   1111111 111233 5555433221    347999999988887775322     2222233333444555554


Q ss_pred             CCCCCCCCcEEEEECCCCceEecc
Q 010847          204 CSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       204 ~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                      ...  ....++.+|+.+..+..+.
T Consensus       341 ~~~--~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       341 REG--GGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             ccC--CceEEEEEeCCCCCeEEcc
Confidence            332  2347999999887776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.14  E-value=0.11  Score=52.75  Aligned_cols=49  Identities=27%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      .+|+.+.+.+....+....+...+..++...+.++.+|+..+..++++.
T Consensus       188 e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  188 EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333444444444555555555544444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.10  E-value=0.75  Score=45.34  Aligned_cols=175  Identities=23%  Similarity=0.327  Sum_probs=93.5

Q ss_pred             EEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           89 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        89 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ...++.+++.|+.+.      .+..+|..+.. ......|....-|++ ++...++.|++-||+++      .|-.||+.
T Consensus       119 ~~~d~t~l~s~sDd~------v~k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg------~vrl~DtR  184 (487)
T KOG0310|consen  119 SPQDNTMLVSGSDDK------VVKYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDG------KVRLWDTR  184 (487)
T ss_pred             cccCCeEEEecCCCc------eEEEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCc------eEEEEEec
Confidence            456899999987532      24555666555 344444444444443 33445789999999876      36677776


Q ss_pred             CC-eeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc-----EE
Q 010847          169 TM-TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-----AG  241 (499)
Q Consensus       169 t~-~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-----~~  241 (499)
                      +. .|..--. ...|..    .++.+.+ ..|...||       |.+-++|+.++        +.++..+..|     ++
T Consensus       185 ~~~~~v~eln-hg~pVe----~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  185 SLTSRVVELN-HGCPVE----SVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             cCCceeEEec-CCCcee----eEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEE
Confidence            55 4432211 122222    2334444 55555566       56777777543        3333344433     12


Q ss_pred             EEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC
Q 010847          242 ITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  311 (499)
Q Consensus       242 ~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  311 (499)
                      ... ++.-++.||.+.+     +-+||  +..|+.+..+..+.|      -+...+.++ +.-+++|+.++
T Consensus       245 ~l~s~~~rLlS~sLD~~-----VKVfd--~t~~Kvv~s~~~~~p------vLsiavs~d-d~t~viGmsnG  301 (487)
T KOG0310|consen  245 RLASDSTRLLSGSLDRH-----VKVFD--TTNYKVVHSWKYPGP------VLSIAVSPD-DQTVVIGMSNG  301 (487)
T ss_pred             EeecCCceEeecccccc-----eEEEE--ccceEEEEeeecccc------eeeEEecCC-CceEEEecccc
Confidence            222 3466777776543     67888  445666655432222      122223333 34566688776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.95  E-value=1.9  Score=42.41  Aligned_cols=277  Identities=15%  Similarity=0.144  Sum_probs=131.8

Q ss_pred             CccccCCCCCeEEcccCCCCCCccc-------ceEEEEcCCCCCcccCcEEE--EEcCCCceEEeeeCcccccCccccCC
Q 010847            5 SWHLELPYDLWVTLPVSGARPSPRY-------KKLYIVGGSRNGRFLSDVQV--FDLRSLAWSNLRLETELDADKTEDSG   75 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~~~~p~~r~-------~~l~~~GG~~~~~~~~~~~~--yd~~t~~W~~~~~~~~~~~~~~~~~~   75 (499)
                      .|.||...+++..+......+.|.+       ..||+.....  .....+..  ++..+++...+.....          
T Consensus        17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~----------   84 (345)
T PF10282_consen   17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPS----------   84 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEE----------
T ss_pred             EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeecc----------
Confidence            4667888888887664222222222       2788886643  11223444  4555578888766431          


Q ss_pred             CCCCCCCccceeEEE--ECCEEEEEcccCCCCCCCceEEEEECCCC-cEEEee----c--CCCCC---CCCcceEEEEE-
Q 010847           76 LLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVME----T--SGKVP---VARGGHSVTLV-  142 (499)
Q Consensus        76 ~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~----~--~g~~p---~~r~~~~~~~~-  142 (499)
                           .+...+.++.  -+..||+.- +.     ...+.+|++... .-....    .  .|+.|   ..-.-|.+... 
T Consensus        85 -----~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p  153 (345)
T PF10282_consen   85 -----GGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP  153 (345)
T ss_dssp             -----SSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred             -----CCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence                 1222222222  245566542 21     234778877763 322221    0  11211   22333555444 


Q ss_pred             -CCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEEC
Q 010847          143 -GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDL  218 (499)
Q Consensus       143 -~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~  218 (499)
                       ++.+|+.- .     -.+.|++|+.....  ....... ..|.+-.=..++.. +++++|+....+     +.|..|+.
T Consensus       154 dg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~  221 (345)
T PF10282_consen  154 DGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDY  221 (345)
T ss_dssp             TSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEE
T ss_pred             CCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEee
Confidence             34677652 1     14678998887655  5443322 12222111123333 356899987543     56777766


Q ss_pred             C--CCceEecccCCCCCC---cC-cccEEEEE--CCEEEEEeCCCCCCCcceEEEEEC--CCCceEEeccCCCCCCCCCC
Q 010847          219 Q--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNPLASE  288 (499)
Q Consensus       219 ~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~--~~~~W~~l~~~~~~~p~~~~  288 (499)
                      .  ++.++.+......|.   .. ..+.+++.  +..+||.-..     .+.+.+|++  .++..+.+...+....    
T Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~----  292 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGK----  292 (345)
T ss_dssp             ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSS----
T ss_pred             cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCC----
Confidence            5  666666543232322   22 22233333  3467776432     345667766  5556665544332110    


Q ss_pred             CCceEEEEEcCceEEEEEcCCCCCCCceEEEEE--CCCCCCCCC
Q 010847          289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR--LKPRDIPRP  330 (499)
Q Consensus       289 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~--~~~~~W~~~  330 (499)
                       +-..+.+..+..+|+|.+...+    .+.+|+  ..+..+...
T Consensus       293 -~Pr~~~~s~~g~~l~Va~~~s~----~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  293 -FPRHFAFSPDGRYLYVANQDSN----TVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             -SEEEEEE-TTSSEEEEEETTTT----EEEEEEEETTTTEEEEE
T ss_pred             -CccEEEEeCCCCEEEEEecCCC----eEEEEEEeCCCCcEEEe
Confidence             0122233344567777654433    555554  455555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.95  E-value=0.17  Score=45.87  Aligned_cols=63  Identities=22%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             HhhhHHHHHhhhhhHHHHHHhhccchHHHH---------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          394 ELSLTEVRTENSRFREKIDEVNSTHSELSK---------ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      +..+...+.+..+++.++++.+.++...+.         ++..+..+.+.++++...++.++.++..++..+
T Consensus        51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l  122 (239)
T COG1579          51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444443333322         223334444444555555555554444443333

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.94  E-value=0.16  Score=51.03  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhccccc--CCCceee
Q 010847          458 TIENEVQILRQQKSAFEQEMERATSVQTQ--GSGGVWR  493 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~~~~q~q--~~~~~~~  493 (499)
                      .|.+++..+.+.-.++.++-..+..+.+-  +.+|.||
T Consensus       169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG  206 (475)
T PRK10361        169 TLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG  206 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence            34455555554444555555555555543  5789997

>smart00284 OLF Olfactomedin-like domains

Probab=95.94  E-value=1.4  Score=40.75  Aligned_cols=159  Identities=14%  Similarity=0.024  Sum_probs=85.1

Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee---cC---CCCCCCCcc---eEEEEECCEEEEEc
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME---TS---GKVPVARGG---HSVTLVGSRLIIFG  150 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~---g~~p~~r~~---~~~~~~~~~lyv~G  150 (499)
                      |.+-.|...++++|.+|+--..      ...+..||+.+++-....   ..   ...|....+   .-+++.++-|+++=
T Consensus        71 p~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY  144 (255)
T smart00284       71 PHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY  144 (255)
T ss_pred             CCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEE
Confidence            3457788889999999985432      345999999999765333   11   112221112   22344456676663


Q ss_pred             CcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC
Q 010847          151 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  230 (499)
Q Consensus       151 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  230 (499)
                      ....+.. .=.+..+|+.+..-...-.+ ..|.+..+-+.+++ +- ||++-.. ......-.+.||+.+++=..+.  -
T Consensus       145 at~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k~sa~naFmvC-Gv-LY~~~s~-~~~~~~I~yayDt~t~~~~~~~--i  217 (255)
T smart00284      145 ATEQNAG-KIVISKLNPATLTIENTWIT-TYNKRSASNAFMIC-GI-LYVTRSL-GSKGEKVFYAYDTNTGKEGHLD--I  217 (255)
T ss_pred             eccCCCC-CEEEEeeCcccceEEEEEEc-CCCcccccccEEEe-eE-EEEEccC-CCCCcEEEEEEECCCCccceee--e
Confidence            3222211 22356778877543332222 23444444444433 54 8887431 1122234689999887644432  2


Q ss_pred             CCCCcCcccEEEEEC---CEEEEE
Q 010847          231 DLVTGRAGHAGITID---ENWYIV  251 (499)
Q Consensus       231 ~~p~~r~~~~~~~~~---~~l~v~  251 (499)
                      +++.+...+++...+   .+||+.
T Consensus       218 ~f~n~y~~~s~l~YNP~d~~LY~w  241 (255)
T smart00284      218 PFENMYEYISMLDYNPNDRKLYAW  241 (255)
T ss_pred             eeccccccceeceeCCCCCeEEEE
Confidence            444444555666553   467776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.93  E-value=2  Score=43.82  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=79.9

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.++.-..+.....                .-...+....++.|++.....+    ...++.+|+.++....+
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~l  301 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPG----------------INGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRI  301 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCC----------------CcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEEC
Confidence            479999999887665543211                0111222223456666543322    34699999999988777


Q ss_pred             ecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      ..   ... ........-+ ..|++......    ...+|.+|+.++++..+...+.     ........ +++.|++.+
T Consensus       302 t~---~~~-~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        302 TR---HRA-IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             cc---CCC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEE
Confidence            52   111 1111112223 35555432221    3579999999999888753221     11122222 344444443


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecc
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                       ...  ....++.+|+.++....+.
T Consensus       369 -~~~--g~~~I~~~dl~~g~~~~lt  390 (448)
T PRK04792        369 -RTN--GKFNIARQDLETGAMQVLT  390 (448)
T ss_pred             -ecC--CceEEEEEECCCCCeEEcc
Confidence             322  1346899999998877764

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.86  E-value=0.1  Score=52.90  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcccccCCCcee
Q 010847          459 IENEVQILRQQKSAFEQEMERATSVQTQGSGGVW  492 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~  492 (499)
                      .++|.++++.+++.+.+..++++++.....+.-|
T Consensus       429 ~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~  462 (546)
T PF07888_consen  429 AQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW  462 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4566666666666666666666666655555555

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.84  E-value=2.4  Score=42.83  Aligned_cols=193  Identities=9%  Similarity=0.011  Sum_probs=104.1

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccc-eeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD-HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      +++++|+.++.=+.+....                 .... .....-+.+|++.-...+    ..++|.+|+.++.++++
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~L  272 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQI  272 (419)
T ss_pred             EEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEc
Confidence            8999999988766665421                 1111 112222446665543322    35699999999999888


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC
Q 010847          125 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  204 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  204 (499)
                      .   ..+..-......-.+.+|++.-...    -..+++.+|+.++....+...+.     ... ...-+++.|++....
T Consensus       273 T---~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        273 T---NYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE  339 (419)
T ss_pred             c---cCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC
Confidence            6   2222111111111244676654332    13579999999998877754321     222 222234444444432


Q ss_pred             CCCC---CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccC
Q 010847          205 SHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  279 (499)
Q Consensus       205 ~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~  279 (499)
                      ....   ...+++++|+.++.++.+...+     ...+-...-+++.+++-...  .....++.+++..+.=..++..
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~~  410 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPLK  410 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeecC
Confidence            2111   2358999999999998875421     12112222244444443222  2345688888877655555443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=95.84  E-value=0.32  Score=41.41  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=52.5

Q ss_pred             HHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhH
Q 010847          392 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQK  470 (499)
Q Consensus       392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~  470 (499)
                      .+...+.....+...+...++.++.++++.++++...+.....++.+...++..++....+++.+. .++....++..++
T Consensus        56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~  135 (151)
T PF11559_consen   56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHEL  135 (151)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555666666666666666666666666665555556666666666655555555555 3444444555555


Q ss_pred             HHHHHHHHHhhcc
Q 010847          471 SAFEQEMERATSV  483 (499)
Q Consensus       471 ~~~~~~~~~~~~~  483 (499)
                      ...+.|.+.+.++
T Consensus       136 rkke~E~~kLk~r  148 (151)
T PF11559_consen  136 RKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHH
Confidence            5556665555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.80  E-value=0.084  Score=50.73  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847          458 TIENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      .++++.+.+..|.+...+++++++
T Consensus       110 ~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  110 EFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.76  E-value=0.46  Score=46.49  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=84.2

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeec--CCCCCCCCcceEEEEECCE-EEEEcCcCCCCCccCcEEEEECCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET--SGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      --|.+.+|.+..-    .++..|-.++.  .+..  ....|  ..... ..-+|. ..+++|.      ..-+|+||+.+
T Consensus       225 ~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fP--i~~a~-f~p~G~~~i~~s~r------rky~ysyDle~  289 (514)
T KOG2055|consen  225 APLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFP--IQKAE-FAPNGHSVIFTSGR------RKYLYSYDLET  289 (514)
T ss_pred             CceEEEecCCCcE----EEEEecCccCh--hheeeeeccCc--cceee-ecCCCceEEEeccc------ceEEEEeeccc
Confidence            4688888887643    37777776665  2221  01222  22212 222444 6666664      33589999999


Q ss_pred             CeeEEeeecCCCCCCCccceE-EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  248 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  248 (499)
                      .+-.++.+...++ .+.-+.. +...++ ++++-|..+     -|+.+...|+.|..-   -.++.....++....+..|
T Consensus       290 ak~~k~~~~~g~e-~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  290 AKVTKLKPPYGVE-EKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKEL  359 (514)
T ss_pred             cccccccCCCCcc-cchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcEE
Confidence            9999988765444 2222222 334355 555555432     477777778877541   1122222333333334567


Q ss_pred             EEEeCCCCCCCcceEEEEECCCCc
Q 010847          249 YIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       249 ~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      +++||..      .+|++|+..+.
T Consensus       360 ~~~~~~G------eV~v~nl~~~~  377 (514)
T KOG2055|consen  360 LASGGTG------EVYVWNLRQNS  377 (514)
T ss_pred             EEEcCCc------eEEEEecCCcc
Confidence            7777632      69999998874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.59  E-value=1.9  Score=39.90  Aligned_cols=189  Identities=16%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      ..++.+|+.++.-......                  .  ..+++..  ++.+|+....        .+.++|+.++.++
T Consensus        22 ~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~   73 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVT   73 (246)
T ss_dssp             TEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEE
T ss_pred             CEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEE
Confidence            4689999999877665432                  2  2333333  6888887642        2667799999998


Q ss_pred             EeecC--CCCCCCCcceEEEEECCEEEEEc--CcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcE
Q 010847          123 VMETS--GKVPVARGGHSVTLVGSRLIIFG--GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRY  197 (499)
Q Consensus       123 ~~~~~--g~~p~~r~~~~~~~~~~~lyv~G--G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~  197 (499)
                      .+...  +..+..+.+-.++.-++.||+--  ...........++++++. .+...+...  +  .. -..++... ++.
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~--~~-pNGi~~s~dg~~  147 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L--GF-PNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E--SS-EEEEEEETTSSE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c--cc-ccceEECCcchh
Confidence            88743  11233444444444567877742  111111011569999998 666655431  1  11 12333333 445


Q ss_pred             EEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCccc-EEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCce
Q 010847          198 LIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  273 (499)
Q Consensus       198 l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  273 (499)
                      ||+.-     ...+.|++|++....  +.....-...+...... .+++- +++|||..-     ....+++||+....-
T Consensus       148 lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~  217 (246)
T PF08450_consen  148 LYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLL  217 (246)
T ss_dssp             EEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEE
T ss_pred             eeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEE
Confidence            66632     234569999986433  43322111112221112 33333 567888732     123799999995555


Q ss_pred             EEec
Q 010847          274 SILT  277 (499)
Q Consensus       274 ~~l~  277 (499)
                      ..+.
T Consensus       218 ~~i~  221 (246)
T PF08450_consen  218 REIE  221 (246)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            5554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.58  E-value=0.26  Score=48.01  Aligned_cols=9  Identities=11%  Similarity=0.261  Sum_probs=4.1

Q ss_pred             eEEEEECCC
Q 010847          262 ETIVLNMTK  270 (499)
Q Consensus       262 ~~~~~d~~~  270 (499)
                      .+|.+++.|
T Consensus       268 H~yalel~t  276 (493)
T KOG0804|consen  268 HCYALELET  276 (493)
T ss_pred             ceEEEeecc
Confidence            344444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.58  E-value=3.1  Score=42.22  Aligned_cols=191  Identities=10%  Similarity=0.029  Sum_probs=96.8

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.+++-..+.....                .-...+...-+++|++.....+    ...++++|+.++....+
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~l  282 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEG----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRV  282 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCC----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEc
Confidence            469999999988776643221                0001111122445654432222    24699999999988777


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEE-EcCcEEEEEcC
Q 010847          125 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGG  203 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG  203 (499)
                      .   ..+...........+..|++.....    ....+|.+|+.++++..+...+     ........ -+++.|++...
T Consensus       283 t---~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        283 T---NHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             c---cCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEc
Confidence            5   2221111111111234565543222    1347999999998888775321     11111222 23454555443


Q ss_pred             CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          204 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       204 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      ..+   ...++.+|+.++..+.+....   .. ... ...-+++.+++.....  ....++..+.....=..++
T Consensus       351 ~~~---~~~l~~~dl~tg~~~~lt~~~---~~-~~p-~~spdg~~i~~~~~~~--g~~~l~~~~~~g~~~~~l~  414 (430)
T PRK00178        351 QDG---NFHVAAQDLQRGSVRILTDTS---LD-ESP-SVAPNGTMLIYATRQQ--GRGVLMLVSINGRVRLPLP  414 (430)
T ss_pred             cCC---ceEEEEEECCCCCEEEccCCC---CC-CCc-eECCCCCEEEEEEecC--CceEEEEEECCCCceEECc
Confidence            221   236999999998887764311   11 111 2222555555543222  2345777777544333343

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.13  Score=52.14  Aligned_cols=79  Identities=14%  Similarity=0.300  Sum_probs=40.1

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ  475 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~~~~l~~~~~~~~e~~~~~~~~~~~~~  475 (499)
                      +...++..++.++.++++++.++++++.++++++.++..+..++.       |++.....+..|++++++.....++|+.
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~  502 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER  502 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555544443       2333333334555555555555556666


Q ss_pred             HHHHhh
Q 010847          476 EMERAT  481 (499)
Q Consensus       476 ~~~~~~  481 (499)
                      .+++++
T Consensus       503 ~l~~l~  508 (652)
T COG2433         503 KLAELR  508 (652)
T ss_pred             HHHHHH
Confidence            655444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.52  E-value=3.6  Score=42.58  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             CcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEEC-CEEEEEcccCCCCCCCceEEEEECCCCc-
Q 010847           45 SDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNL-  120 (499)
Q Consensus        45 ~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~-  120 (499)
                      ..++.+|+.+++  |+.-......     .    +.++  .....++..+ +.||+...       ...++.+|..|++ 
T Consensus        71 g~l~AlD~~tG~~~W~~~~~~~~~-----~----~~~~--~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~  132 (488)
T cd00216          71 SALFALDAATGKVLWRYDPKLPAD-----R----GCCD--VVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQ  132 (488)
T ss_pred             CcEEEEECCCChhhceeCCCCCcc-----c----cccc--cccCCcEEccCCeEEEecC-------CCeEEEEECCCCCE
Confidence            468999998875  8774432100     0    0001  1112234445 77886432       2349999998774 


Q ss_pred             -EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCC---CccCcEEEEECCCC--eeEEee
Q 010847          121 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETM--TWDAVE  176 (499)
Q Consensus       121 -W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~v~~yd~~t~--~W~~~~  176 (499)
                       |+.-......+......+.++.++.+|+ |..+...   .....+++||..|+  .|+.-.
T Consensus       133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         133 VWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             eeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence             7654311000000012233445555554 4322211   12457999999876  486543

The alignment model contains an 8-bladed beta-propeller.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.52  E-value=0.24  Score=44.99  Aligned_cols=50  Identities=14%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             hhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010847          395 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  444 (499)
Q Consensus       395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (499)
                      ..+.+.+.+...+...+...+..+++.+.+....+.+++..+++..+.+.
T Consensus        31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~   80 (239)
T COG1579          31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE   80 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444445555444444444444444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.48  E-value=0.44  Score=42.54  Aligned_cols=32  Identities=28%  Similarity=0.479  Sum_probs=15.3

Q ss_pred             hhHHHHHhhhhhHHHHHHhhccchHHHHHHHH
Q 010847          396 SLTEVRTENSRFREKIDEVNSTHSELSKELSS  427 (499)
Q Consensus       396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  427 (499)
                      .+.+...+..+|.+-+...+.+.+++++++..
T Consensus        49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~   80 (201)
T PF13851_consen   49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKN   80 (201)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555554444443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.44  E-value=0.39  Score=42.67  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=19.4

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  450 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  450 (499)
                      ....+...+...+.......+.++..+..++..++...++..+..+++
T Consensus       103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  103 RIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>cd00094 HX Hemopexin-like repeats

Probab=95.41  E-value=1.6  Score=38.80  Aligned_cols=155  Identities=12%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCC---CCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcE
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK---VPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDV  162 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~---~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v  162 (499)
                      +++...+++|+|-|.        .+|+++..............   +|. ....+..... +++|+|-|.        ..
T Consensus        11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~--------~y   73 (194)
T cd00094          11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD--------KY   73 (194)
T ss_pred             eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC--------EE
Confidence            344556999999773        27888765222222111111   221 2222222223 789999653        47


Q ss_pred             EEEECCCCeeEEeeec---CCCCCCCccceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEec--c-cCCCCC-C
Q 010847          163 HFLDLETMTWDAVEVT---QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP--E-IKGDLV-T  234 (499)
Q Consensus       163 ~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~--~-~~~~~p-~  234 (499)
                      |.|+..+..+..+..+   +-++.+..--++.... ++.+|+|.|       +..|+||..+++...-  . +...++ .
T Consensus        74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~  146 (194)
T cd00094          74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV  146 (194)
T ss_pred             EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence            7777654222111111   1111111112233333 678999988       4689998766554210  0 001111 1


Q ss_pred             cCcccEEEEEC-CEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          235 GRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       235 ~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      +..-.++.... +.+|+|-|.       ..|+||..+..
T Consensus       147 p~~idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~  178 (194)
T cd00094         147 PDKVDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE  178 (194)
T ss_pred             CCCcceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence            21122333344 789999773       68999987765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.40  E-value=1.8  Score=40.09  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      .++.||.--|..+.    +.+..||+.|++-....   .+|...++=.++.++++||..-=.      .+..++||..+.
T Consensus        54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~tl  120 (264)
T PF05096_consen   54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNTL  120 (264)
T ss_dssp             ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTTT
T ss_pred             CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEEEccccc
Confidence            57889988887664    45999999999876655   688888888999999999998442      456899999875


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccC-CCCCCcCcccEEEEECCEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGITIDENW  248 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~~~~~~l  248 (499)
                      +  .+..   .+.+..+-.++.. ++.+++--|      ++.++.+|+.+.+-.. +.+. ...|.. .---+-.+++.+
T Consensus       121 ~--~~~~---~~y~~EGWGLt~d-g~~Li~SDG------S~~L~~~dP~~f~~~~~i~V~~~g~pv~-~LNELE~i~G~I  187 (264)
T PF05096_consen  121 K--KIGT---FPYPGEGWGLTSD-GKRLIMSDG------SSRLYFLDPETFKEVRTIQVTDNGRPVS-NLNELEYINGKI  187 (264)
T ss_dssp             E--EEEE---EE-SSS--EEEEC-SSCEEEE-S------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEE
T ss_pred             e--EEEE---EecCCcceEEEcC-CCEEEEECC------ccceEEECCcccceEEEEEEEECCEECC-CcEeEEEEcCEE
Confidence            3  3332   2334567777754 555888777      3589999998754322 2221 111211 112334445555


Q ss_pred             EEEeCCCCCCCcceEEEEECCCCceEEe
Q 010847          249 YIVGGGDNNNGCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       249 ~v~GG~~~~~~~~~~~~~d~~~~~W~~l  276 (499)
                      |.=     --..+.+.+.|+.++.-...
T Consensus       188 yAN-----VW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  188 YAN-----VWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             EEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred             EEE-----eCCCCeEEEEeCCCCeEEEE
Confidence            532     12245788999999875543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.11  Score=52.54  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=15.8

Q ss_pred             hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847          396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  431 (499)
Q Consensus       396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  431 (499)
                      ..+..+.++..|+.++++++..+++++.++.+.+.+
T Consensus       430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~  465 (652)
T COG2433         430 TVERLEEENSELKRELEELKREIEKLESELERFRRE  465 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.33  E-value=3.8  Score=41.68  Aligned_cols=193  Identities=7%  Similarity=-0.043  Sum_probs=96.7

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.++....+.....                .....+....+..|++.....+    ..++|.+|+.++....+
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~L  285 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPG----------------MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRL  285 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCC----------------cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEc
Confidence            579999999998877654321                1112222233455655443222    34599999999887766


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcC
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  203 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG  203 (499)
                      .   ..+.... .....-++ +|++.....    ....+|.+|+.+.....+...    ..........-+++.|++.. 
T Consensus       286 t---~~~~~~~-~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-  352 (435)
T PRK05137        286 T---DSPAIDT-SPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-  352 (435)
T ss_pred             c---CCCCccC-ceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-
Confidence            4   2221111 11222234 454432111    135799999988777766531    11111111122344444433 


Q ss_pred             CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEECCCCceEEec
Q 010847          204 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       204 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~W~~l~  277 (499)
                      ....  ...++.+|+.+.....+....     ....-...-+++.+++....... ....+|++|+....-..++
T Consensus       353 ~~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        353 QGGG--QFSIGVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             cCCC--ceEEEEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            2111  247899998776665543211     11111122244444443322211 1247899999877666654

>PTZ00421 coronin; Provisional

Probab=95.27  E-value=4.3  Score=41.92  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      +.+++.||.+      ..+.++|+.++.-...- . .....  -.++. ..++.+++.|+.+      ..+.+||+.+.+
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~-~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~  201 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVI-K-CHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEE-c-CCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence            4577777753      34888998877532221 0 11111  11222 2256777777754      358899998765

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.17  E-value=0.24  Score=44.28  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Q 010847          459 IENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      +.-+-+.+.++..++++|++++
T Consensus       105 Lk~e~evL~qr~~kle~ErdeL  126 (201)
T PF13851_consen  105 LKWEHEVLEQRFEKLEQERDEL  126 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444555554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.12  E-value=2.8  Score=41.49  Aligned_cols=188  Identities=11%  Similarity=0.116  Sum_probs=99.7

Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      ..++++++...++-+++.-.|     |...-++-  -++.|.|.--.-..-.....+|..+....+...+        +.
T Consensus       106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--------nl  172 (668)
T COG4946         106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL--------NL  172 (668)
T ss_pred             cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec--------cC
Confidence            456999999999998887554     22222222  2566666543321111122334343333333222        22


Q ss_pred             ccceEEEEcCcEEEEEcCCC---------CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCC
Q 010847          186 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  256 (499)
Q Consensus       186 ~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  256 (499)
                      .-.+..++.|+ +.++|-..         .+..-..+|+-.....+++++-   +++...+  +-+++++++|.+.-.+ 
T Consensus       173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYFlsD~e-  245 (668)
T COG4946         173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV---DLDGNVS--SPMIVGERVYFLSDHE-  245 (668)
T ss_pred             CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeee---ecCCCcC--CceEEcceEEEEeccc-
Confidence            22344456677 66666422         1122345666555555566542   2222211  2356688999885433 


Q ss_pred             CCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCCCCcc
Q 010847          257 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  332 (499)
Q Consensus       257 ~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~~~  332 (499)
                        +.-.+|.-|+..+--.+-.++...-|  |  +    +..+++..++-.||       ++|.||+.+..-++..+
T Consensus       246 --G~GnlYSvdldGkDlrrHTnFtdYY~--R--~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI  304 (668)
T COG4946         246 --GVGNLYSVDLDGKDLRRHTNFTDYYP--R--N----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI  304 (668)
T ss_pred             --CccceEEeccCCchhhhcCCchhccc--c--c----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
Confidence              33467777877766655555443222  1  1    23355555555566       89999998877666544

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=95.11  E-value=0.69  Score=39.30  Aligned_cols=48  Identities=27%  Similarity=0.417  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      +..+...+.++..+....+.+...++.++++.+.++.+.-.+...+..
T Consensus         8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~   55 (159)
T PF05384_consen    8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK   55 (159)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666677777777777666666555444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.10  E-value=1  Score=37.27  Aligned_cols=72  Identities=14%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +..+....+........+...-+..+..++.+++....++..+..++...++.-..+.+.+++.+.+...+.
T Consensus        29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334444444445555555555555555555555555555555555555555555554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.07  E-value=2.3  Score=42.87  Aligned_cols=240  Identities=13%  Similarity=0.047  Sum_probs=119.2

Q ss_pred             ccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee-EEEE-CCEEEEEcccCCCCC-----CCceEEEEE
Q 010847           43 FLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW-GTKLLILGGHYKKSS-----DSMIVRFID  115 (499)
Q Consensus        43 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s-~~~~-~~~iyv~GG~~~~~~-----~~~~~~~yd  115 (499)
                      -...+.++|+.++....-..                   ....++ ++-. +++.|++........     ....++.+.
T Consensus       148 e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  148 EWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             SEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            34468999999995443221                   122222 2222 334554544433211     245688888


Q ss_pred             CCCCcEEEeecCCCCCCCCc-ceEEEEE-CC-EEEEEcCcCCCCCccCcEEEEECCCC-----eeEEeeecCCCCCCCcc
Q 010847          116 LETNLCGVMETSGKVPVARG-GHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETM-----TWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       116 ~~t~~W~~~~~~g~~p~~r~-~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~  187 (499)
                      +.+..-...... ..+.... ...+..- ++ .|++.-.....   .++++.+|....     .|..+...    ..- .
T Consensus       209 ~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~l~~~----~~~-~  279 (414)
T PF02897_consen  209 LGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKLLSPR----EDG-V  279 (414)
T ss_dssp             TTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEEEEES----SSS--
T ss_pred             CCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEEEeCC----CCc-e
Confidence            888765422211 2222222 2222222 33 44443332211   378999999875     78888641    111 1


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc---eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  264 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~  264 (499)
                      ...+...++.+|+...  .......|..+++.+..   |..+-.  +......--.+...++.|++..=   .+....+.
T Consensus       280 ~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~  352 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLR  352 (414)
T ss_dssp             EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEE---ETTEEEEE
T ss_pred             EEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEEEE---ECCccEEE
Confidence            1222233666888765  23444678999988765   664311  11111223344455788777642   23356789


Q ss_pred             EEECC-CCceEEeccCCCCCCCCCCCCceEEEE--EcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847          265 VLNMT-KLAWSILTSVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  327 (499)
Q Consensus       265 ~~d~~-~~~W~~l~~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W  327 (499)
                      ++|+. +..-..++.+.       .+. .....  ...+...|.+.+...  ...+|.||+.+++.
T Consensus       353 v~~~~~~~~~~~~~~p~-------~g~-v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPE-------AGS-VSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLATGEL  408 (414)
T ss_dssp             EEETT-TEEEEEEESSS-------SSE-EEEEES-TT-SEEEEEEEETTE--EEEEEEEETTTTCE
T ss_pred             EEECCCCcEEeeecCCc-------ceE-EeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCCCCE
Confidence            99998 44333433221       111 11111  123456666676643  45799999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK09039 hypothetical protein; Validated

Probab=94.99  E-value=0.35  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=9.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +.++..|++++..++.|+..++
T Consensus       136 ~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        136 LAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.93  E-value=5.4  Score=41.27  Aligned_cols=124  Identities=14%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCC-CCCC-CCcceEEEEEC-CEEEEEcCcCCCCCccCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-KVPV-ARGGHSVTLVG-SRLIIFGGEDRSRKLLND  161 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~p~-~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~  161 (499)
                      +.++.++.||+....       ..++.+|..+++  |+.-.... .... +.....++..+ +++|+...       ...
T Consensus        56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~  121 (488)
T cd00216          56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGR  121 (488)
T ss_pred             CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCe
Confidence            346778999986542       239999998764  87643211 0000 11111233445 77776432       246


Q ss_pred             EEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC----CCCCcEEEEECCCCc--eEec
Q 010847          162 VHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       162 v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ++++|..|+  .|+.-......+......+.++. ++. +++|..+..    .....++.||..+++  |+.-
T Consensus       122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            899999876  48654311000000011222333 564 445432211    124578999998875  8763

The alignment model contains an 8-bladed beta-propeller.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.87  E-value=0.76  Score=40.83  Aligned_cols=28  Identities=29%  Similarity=0.281  Sum_probs=11.9

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          430 GQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +.++..++++..++....++.++.+.++
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.85  E-value=5.2  Score=40.67  Aligned_cols=190  Identities=9%  Similarity=0.027  Sum_probs=96.7

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.+++-..+.....                .-...+...-+.+|++.....+    ...++++|+.++....+
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g----------------~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~l  287 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRG----------------INGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRL  287 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCC----------------CccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEEC
Confidence            468999999888766543221                1111112222455655433222    24599999999887666


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      ..   .+..... ....-++ .|++.....+    ...+|.+|+.+.+...+...+     ......... ++++|++..
T Consensus       288 t~---~~~~~~~-~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        288 TN---HFGIDTE-PTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             cc---CCCCccc-eEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEE
Confidence            42   1111111 1122234 4544432221    347999999888887775322     222222222 344555544


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      +.+ .  ...++++|+.++....+.... .   ... ....-+++.+++....  .....++.+|+....=..+.
T Consensus       355 ~~~-~--~~~I~v~d~~~g~~~~Lt~~~-~---~~~-p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        355 GSG-G--QYRIAVMDLSTGSVRTLTPGS-L---DES-PSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             CCC-C--ceeEEEEECCCCCeEECCCCC-C---CCC-ceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcc
Confidence            321 1  237999999888887664211 1   111 1222245555554322  22346888888655434443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.81  E-value=0.69  Score=44.18  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             hHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       397 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +++.+++.+..++++.+.+..+.+...++..+.++.+.++.++..+-.+-+++..+++.++
T Consensus       111 l~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~  171 (499)
T COG4372         111 LQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQ  171 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444333344444444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.78  E-value=0.4  Score=46.07  Aligned_cols=51  Identities=16%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      ...+++.++...+.++.....++++.+++++..++++.+++..+......+
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555555555555555555555554444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.73  E-value=5.7  Score=40.59  Aligned_cols=149  Identities=17%  Similarity=0.181  Sum_probs=79.3

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      ..++++|+.++.-..+.   ..+.........--+..|++....++    ..+++.+|+.+++...+....    .. ..
T Consensus       242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~-~~  309 (448)
T PRK04792        242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AI-DT  309 (448)
T ss_pred             cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CC-cc
Confidence            46999999998776665   23321111111112345665533221    357999999998887765311    11 11


Q ss_pred             eEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          189 SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       189 ~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      ..+.. ++..|++.....+   ...+|.+|+.+++++.+...+..    .......-+++.+++.+..  ....+++++|
T Consensus       310 ~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~d  380 (448)
T PRK04792        310 EPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQD  380 (448)
T ss_pred             ceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEEE
Confidence            12222 2444444432221   25799999999988887421211    1111122234434343322  1234789999


Q ss_pred             CCCCceEEecc
Q 010847          268 MTKLAWSILTS  278 (499)
Q Consensus       268 ~~~~~W~~l~~  278 (499)
                      +.++....+..
T Consensus       381 l~~g~~~~lt~  391 (448)
T PRK04792        381 LETGAMQVLTS  391 (448)
T ss_pred             CCCCCeEEccC
Confidence            99988776643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.68  E-value=2  Score=39.71  Aligned_cols=154  Identities=14%  Similarity=-0.022  Sum_probs=80.1

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC--ceEEEEECCCCcEEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGV  123 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~  123 (499)
                      .+.++|+.+++++.+.....           +..+..+.+-.++.-++.||+.--........  ..++++++. ++...
T Consensus        61 ~~~~~d~~~g~~~~~~~~~~-----------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   61 GIAVVDPDTGKVTVLADLPD-----------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             CEEEEETTTTEEEEEEEEET-----------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             ceEEEecCCCcEEEEeeccC-----------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            45677999999998877531           11123444444444467888753222221112  569999999 66665


Q ss_pred             eecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCC--CeeEEeeecCCCCCCCc-cceEEEEcCcEEE
Q 010847          124 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPRY-DHSAALHANRYLI  199 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~p~~r~-~~~~~~~~~~~l~  199 (499)
                      +..  .+.  ..+..+..-++ .||+.--      ..+.++.|++..  ..+........++.... --.++...++.||
T Consensus       129 ~~~--~~~--~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~  198 (246)
T PF08450_consen  129 VAD--GLG--FPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW  198 (246)
T ss_dssp             EEE--EES--SEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred             Eec--Ccc--cccceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence            542  111  11222222233 5776311      355699999853  33443332212222221 2234444567788


Q ss_pred             EEcCCCCCCCCCcEEEEECCCCceEec
Q 010847          200 VFGGCSHSIFFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       200 v~GG~~~~~~~~~i~~~d~~~~~W~~~  226 (499)
                      +..-     ..+.|++||+....-..+
T Consensus       199 va~~-----~~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  199 VADW-----GGGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             EEEE-----TTTEEEEEETTSCEEEEE
T ss_pred             EEEc-----CCCEEEEECCCccEEEEE
Confidence            8622     124799999985555555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.68  E-value=0.44  Score=51.89  Aligned_cols=52  Identities=29%  Similarity=0.410  Sum_probs=21.4

Q ss_pred             HhhhhhHHHHHHhhccc-hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          402 TENSRFREKIDEVNSTH-SELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      .....++..+...+.+. .+...++.+.++.+.+++.++++++.++..+..++
T Consensus       372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~  424 (1074)
T KOG0250|consen  372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL  424 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444443333333 33333334444444444444444444444443333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.65  E-value=0.23  Score=44.25  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=23.6

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +...+..+++..+..+.+....+..++.++..++.++..++..+.++++-++.++
T Consensus        96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~  150 (194)
T PF08614_consen   96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ  150 (194)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555556666666666666666666666666666666666665554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.58  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFR  408 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~  408 (499)
                      +..|+.+++.+++..++.+.+.++++
T Consensus       326 qaELerRRq~leeqqqreree~eqkE  351 (1118)
T KOG1029|consen  326 QAELERRRQALEEQQQREREEVEQKE  351 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666555554444444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.53  E-value=0.93  Score=40.62  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=9.3

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHH
Q 010847          429 QGQLVAERSRCFKLEAQIAELQK  451 (499)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~e~~~  451 (499)
                      +..+.+.+..++.+...+.|++|
T Consensus        97 eddlsqt~aikeql~kyiReLEQ  119 (333)
T KOG1853|consen   97 EDDLSQTHAIKEQLRKYIRELEQ  119 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444443333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.51  E-value=0.45  Score=45.74  Aligned_cols=20  Identities=5%  Similarity=0.315  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~  477 (499)
                      .++.++.+++++.+++..+.
T Consensus       103 ~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen  103 ELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.39  E-value=2.9  Score=38.79  Aligned_cols=141  Identities=21%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             cCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           44 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        44 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      -+.+..||+.+++-.....++                ..-.+-.++.++++||..-=.      ....++||+.+.  +.
T Consensus        67 ~S~l~~~d~~tg~~~~~~~l~----------------~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~tl--~~  122 (264)
T PF05096_consen   67 QSSLRKVDLETGKVLQSVPLP----------------PRYFGEGITILGDKLYQLTWK------EGTGFVYDPNTL--KK  122 (264)
T ss_dssp             EEEEEEEETTTSSEEEEEE-T----------------TT--EEEEEEETTEEEEEESS------SSEEEEEETTTT--EE
T ss_pred             cEEEEEEECCCCcEEEEEECC----------------ccccceeEEEECCEEEEEEec------CCeEEEEccccc--eE
Confidence            367889999999877665553                356888899999999988422      334899999875  44


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee-EEeeecC-CCCCCCccceEEEEcCcEEEEE
Q 010847          124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQ-TPPAPRYDHSAALHANRYLIVF  201 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~  201 (499)
                      +.   ..+.+..|-.++..+..|++--|       ++.++.+||.+.+= ..+.+.. ..|..+- --+-.+ ++.||. 
T Consensus       123 ~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE~i-~G~IyA-  189 (264)
T PF05096_consen  123 IG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELEYI-NGKIYA-  189 (264)
T ss_dssp             EE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---E-EEEEEE-TTEEEE-
T ss_pred             EE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCCc-EeEEEE-cCEEEE-
Confidence            44   34445678888888888998766       55799999987543 2232221 1111110 001111 343443 


Q ss_pred             cCCCCCCCCCcEEEEECCCCceEe
Q 010847          202 GGCSHSIFFNDLHVLDLQTNEWSQ  225 (499)
Q Consensus       202 GG~~~~~~~~~i~~~d~~~~~W~~  225 (499)
                          +--..+.|.+.|+.++.-..
T Consensus       190 ----NVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  190 ----NVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             ----EETTSSEEEEEETTT-BEEE
T ss_pred             ----EeCCCCeEEEEeCCCCeEEE
Confidence                22346789999999987433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.30  E-value=0.3  Score=42.80  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             HHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHh
Q 010847          399 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQ  469 (499)
Q Consensus       399 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~  469 (499)
                      ..+....+++.++++...+++++.+++++++.+++..++++..++.+...+++.++.+.    +|.++..++...
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            34445556666666666666666666666666666666666666655544444443332    444444444443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.29  E-value=7  Score=39.75  Aligned_cols=146  Identities=12%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..++++|+.++.-..+.   ..+... ......- +.+|++....++    ..+++++|+.+.....+...   + .. .
T Consensus       228 ~~l~~~dl~~g~~~~l~---~~~g~~-~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~~-~  294 (433)
T PRK04922        228 SAIYVQDLATGQRELVA---SFRGIN-GAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-GI-D  294 (433)
T ss_pred             cEEEEEECCCCCEEEec---cCCCCc-cCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-CC-c
Confidence            45999999998877665   233211 1112222 345654432221    24799999998876665421   1 11 1


Q ss_pred             ceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEE
Q 010847          188 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETI  264 (499)
Q Consensus       188 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~  264 (499)
                      .......++ .|++.....+   ...+|.+|+.++....+...+     .+.......  ++.+++..+ .+  ....++
T Consensus       295 ~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~--~~~~I~  363 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-SG--GQYRIA  363 (433)
T ss_pred             cceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-CC--CceeEE
Confidence            122223344 3443332221   247999999888887764221     111122222  344555443 21  223789


Q ss_pred             EEECCCCceEEecc
Q 010847          265 VLNMTKLAWSILTS  278 (499)
Q Consensus       265 ~~d~~~~~W~~l~~  278 (499)
                      ++|+.++....+..
T Consensus       364 v~d~~~g~~~~Lt~  377 (433)
T PRK04922        364 VMDLSTGSVRTLTP  377 (433)
T ss_pred             EEECCCCCeEECCC
Confidence            99998888776643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.25  E-value=7.1  Score=39.69  Aligned_cols=187  Identities=17%  Similarity=0.092  Sum_probs=90.8

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      ..++++|+.++....+.   ..+.........-.+.+|++....+.    ..++|.+|+.+.....+...   + .... 
T Consensus       226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~-~~~~-  293 (435)
T PRK05137        226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---P-AIDT-  293 (435)
T ss_pred             CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---C-CccC-
Confidence            45999999999887775   33322222222122345555433222    35799999998877666431   1 1111 


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECC-EEEEEeCCCCCCCcceEEEEE
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      ......++.-++|.....  ....+|++|+.+...+.+...    ..........-++ .|++... ..  ....++++|
T Consensus       294 ~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~--~~~~i~~~d  364 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GG--GQFSIGVMK  364 (435)
T ss_pred             ceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CC--CceEEEEEE
Confidence            112222333333432111  124799999988777766321    1111111122233 4444332 11  124788999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCC-CceEEEEECCCC
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPR  325 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~  325 (499)
                      +.+.....+.... .       ........++ .+|+......+.. ...+|.+++...
T Consensus       365 ~~~~~~~~lt~~~-~-------~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        365 PDGSGERILTSGF-L-------VEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCCCceEeccCCC-C-------CCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCC
Confidence            8777665553211 0       1111223333 3444333222221 257899998654

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.21  E-value=0.5  Score=47.73  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=11.4

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      +...+..+..++++++.|++.++.+...+
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~L  320 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDEL  320 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444443333333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.10  E-value=0.41  Score=42.76  Aligned_cols=12  Identities=25%  Similarity=0.401  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 010847          442 LEAQIAELQKML  453 (499)
Q Consensus       442 ~~~~~~e~~~~l  453 (499)
                      |+.+.+++++++
T Consensus       137 L~~~n~~L~~~l  148 (206)
T PRK10884        137 LKEENQKLKNQL  148 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            444444443333

>PRK09039 hypothetical protein; Validated

Probab=94.09  E-value=0.63  Score=45.41  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      ...+..++.+.+....+...+++.++++++.+++++..++..+...+++.+..
T Consensus       118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~  170 (343)
T PRK09039        118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRES  170 (343)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555566666666666666666555555554333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.07  E-value=0.55  Score=51.15  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      +..+...+++++..+.+.+....++...+.+.+..+..+..++.+++.
T Consensus       677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555666667777777777777777777777777777777777666

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=93.96  E-value=0.48  Score=41.45  Aligned_cols=73  Identities=19%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010847          423 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI  495 (499)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~~  495 (499)
                      ..+++.-..|+.++.|+..|.+-..-+..+|+...    .|..+++.+..+...+.++++.-+..-+.....+..|+
T Consensus        60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~  136 (182)
T PF15035_consen   60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYL  136 (182)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44666777788888888888777777777776665    56677777666666666666544433333333344443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.95  E-value=0.33  Score=52.03  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847          405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  443 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (499)
                      ..|+.+.+....++.+.+++++.++..-+.+.+|.++..
T Consensus       568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~  606 (717)
T PF10168_consen  568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK  606 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444433333344443333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.82  E-value=8.5  Score=39.03  Aligned_cols=147  Identities=14%  Similarity=0.127  Sum_probs=77.6

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..++++|+.++.-..+.   ..+.. .......-+ ++|++....++    ..++|++|+.+.....+...   + .. .
T Consensus       223 ~~l~~~~l~~g~~~~l~---~~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~  289 (430)
T PRK00178        223 PRIFVQNLDTGRREQIT---NFEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D  289 (430)
T ss_pred             CEEEEEECCCCCEEEcc---CCCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence            45999999998877765   22211 111112223 45554322211    25799999999988776531   1 11 1


Q ss_pred             ceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEEEeCCCCCCCcceEEE
Q 010847          188 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       188 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~  265 (499)
                      ...... +++.|++.....+   ...+|.+|+.++.++.+...+    .........-+ +.+++... ..  ...++++
T Consensus       290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~-~~--~~~~l~~  359 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHR-QD--GNFHVAA  359 (430)
T ss_pred             CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEc-cC--CceEEEE
Confidence            112222 2344544432221   247999999988887764211    11111111223 34444432 21  1346999


Q ss_pred             EECCCCceEEecc
Q 010847          266 LNMTKLAWSILTS  278 (499)
Q Consensus       266 ~d~~~~~W~~l~~  278 (499)
                      +|+.++..+.+..
T Consensus       360 ~dl~tg~~~~lt~  372 (430)
T PRK00178        360 QDLQRGSVRILTD  372 (430)
T ss_pred             EECCCCCEEEccC
Confidence            9999988887754

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.76  E-value=0.95  Score=39.78  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +++.+.+.+.+.++..+++.++.+.+.+|+++.
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le  176 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLE  176 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.75  E-value=1.4  Score=41.35  Aligned_cols=44  Identities=18%  Similarity=0.378  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHhhhHH-HHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTE-VRTENSRFREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  426 (499)
                      ++.++.++..+-..+.+ ..--+..|..++.++..+..+++..++
T Consensus        86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le  130 (310)
T PF09755_consen   86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLE  130 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554322221 112233444444444444444444433

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.67  E-value=1.3  Score=40.30  Aligned_cols=70  Identities=20%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHH-------HHHHHHHHhHHHHHHHHHH
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIE-------NEVQILRQQKSAFEQEMER  479 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~-------~e~~~~~~~~~~~~~~~~~  479 (499)
                      ++..+...++...+...++.+++.+-+.|..++...+.+...|+...    -++       +.++.+.+++.....++|+
T Consensus        48 LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr  127 (307)
T PF10481_consen   48 LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER  127 (307)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344455666777777777777766655555543332    233       3444444444444445543


Q ss_pred             h
Q 010847          480 A  480 (499)
Q Consensus       480 ~  480 (499)
                      .
T Consensus       128 s  128 (307)
T PF10481_consen  128 S  128 (307)
T ss_pred             H
Confidence            3

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.59  E-value=0.8  Score=46.35  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      ..+.+..+.+.+...+..++.+..++.+.+...+.++.++.+..+++.++
T Consensus       275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444444443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.59  E-value=1.3  Score=43.29  Aligned_cols=9  Identities=11%  Similarity=0.534  Sum_probs=4.4

Q ss_pred             ceEEEEECC
Q 010847          315 NEVFVMRLK  323 (499)
Q Consensus       315 ~~~~~~~~~  323 (499)
                      ..+|.+++.
T Consensus       267 ~H~yalel~  275 (493)
T KOG0804|consen  267 GHCYALELE  275 (493)
T ss_pred             cceEEEeec
Confidence            345555553

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.58  E-value=0.5  Score=47.03  Aligned_cols=20  Identities=30%  Similarity=0.361  Sum_probs=8.9

Q ss_pred             CCCCcccccchhhHHHHHHH
Q 010847          370 IGNDLSEKDVRTDIDAIKED  389 (499)
Q Consensus       370 ~~~~~~~~~~~~~~~~l~~~  389 (499)
                      ...+...++++.-+.++++-
T Consensus        52 iegDTP~DTlrTlva~~k~~   71 (472)
T TIGR03752        52 IEGDTPADTLRTLVAEVKEL   71 (472)
T ss_pred             CCCCCccchHHHHHHHHHHH
Confidence            34444455554444444333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.51  E-value=8.2  Score=37.86  Aligned_cols=247  Identities=16%  Similarity=0.110  Sum_probs=115.2

Q ss_pred             EEEcCCCCCcccC--cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           33 YIVGGSRNGRFLS--DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        33 ~~~GG~~~~~~~~--~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      +++|++..+. -.  .++.||..++++..+......              ......+...-++.||+..... ..  ...
T Consensus         2 ~~vgsy~~~~-~~gI~~~~~d~~~g~l~~~~~~~~~--------------~~Ps~l~~~~~~~~LY~~~e~~-~~--~g~   63 (345)
T PF10282_consen    2 LYVGSYTNGK-GGGIYVFRFDEETGTLTLVQTVAEG--------------ENPSWLAVSPDGRRLYVVNEGS-GD--SGG   63 (345)
T ss_dssp             EEEEECCSSS-STEEEEEEEETTTTEEEEEEEEEES--------------SSECCEEE-TTSSEEEEEETTS-ST--TTE
T ss_pred             EEEEcCCCCC-CCcEEEEEEcCCCCCceEeeeecCC--------------CCCceEEEEeCCCEEEEEEccc-cC--CCC
Confidence            3566664311 12  345567799999988764211              0111112222357788875543 11  223


Q ss_pred             EEEE--ECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCCC-eeEEeee------c
Q 010847          111 VRFI--DLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEV------T  178 (499)
Q Consensus       111 ~~~y--d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~------~  178 (499)
                      +..|  +..+++.+.+.   ..+..-...+.+.+   +..||+.- +.     ...+.+|++..+ .-.....      .
T Consensus        64 v~~~~i~~~~g~L~~~~---~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~  134 (345)
T PF10282_consen   64 VSSYRIDPDTGTLTLLN---SVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGS  134 (345)
T ss_dssp             EEEEEEETTTTEEEEEE---EEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred             EEEEEECCCcceeEEee---eeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCC
Confidence            5555  45557887776   33322222233333   34566642 11     345788888663 3322211      1


Q ss_pred             CCC---CCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccE-EEEE--CCEEE
Q 010847          179 QTP---PAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHA-GITI--DENWY  249 (499)
Q Consensus       179 ~~~---p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~-~~~~--~~~l~  249 (499)
                      +.-   ...-..|.+....+ +++|+.. .    -.+.|+.|++....  ....... ..|. -.+.. ++..  +..+|
T Consensus       135 g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~-~~~~-G~GPRh~~f~pdg~~~Y  207 (345)
T PF10282_consen  135 GPNPDRQEGPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSI-KVPP-GSGPRHLAFSPDGKYAY  207 (345)
T ss_dssp             ESSTTTTSSTCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEE-ECST-TSSEEEEEE-TTSSEEE
T ss_pred             CCcccccccccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeecc-cccc-CCCCcEEEEcCCcCEEE
Confidence            111   12233455555544 5566642 1    14679999887665  5442211 1121 22222 2333  34788


Q ss_pred             EEeCCCCCCCcceEEEEECC--CCceEEeccCCCCCCCCCCC--CceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          250 IVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEG--LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       250 v~GG~~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~p~~~~~--~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      |+...+     +.+.+|+..  +..++.+...+.... ...+  ......+..+..+||+.-..    .+.|.+|+++
T Consensus       208 v~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d  275 (345)
T PF10282_consen  208 VVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDLD  275 (345)
T ss_dssp             EEETTT-----TEEEEEEEETTTTEEEEEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEEC
T ss_pred             EecCCC-----CcEEEEeecccCCceeEEEEeeeccc-cccccCCceeEEEecCCCEEEEEecc----CCEEEEEEEe
Confidence            886532     345555544  667766543332211 1111  22333334445688875432    4477788873

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.46  E-value=6.8  Score=38.70  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=32.1

Q ss_pred             ccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE---E-CCEEEEEcCcCC
Q 010847           83 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL---V-GSRLIIFGGEDR  154 (499)
Q Consensus        83 r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~---~-~~~lyv~GG~~~  154 (499)
                      -.-++++..+.-.|++||.-.     .++|.+.+.++.--.+-       .+++-+.+.   . ++..++-||.++
T Consensus        82 g~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             cceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCc
Confidence            345666666766777777322     23888777776422211       112222222   2 457777777664

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.45  E-value=0.73  Score=53.38  Aligned_cols=6  Identities=33%  Similarity=0.462  Sum_probs=2.7

Q ss_pred             EEEcCC
Q 010847          304 VAFGGY  309 (499)
Q Consensus       304 ~v~GG~  309 (499)
                      +|++|.
T Consensus       138 ~~~qg~  143 (1164)
T TIGR02169       138 VVLQGD  143 (1164)
T ss_pred             EEecch
Confidence            344553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=93.45  E-value=1.1  Score=46.81  Aligned_cols=9  Identities=33%  Similarity=0.486  Sum_probs=3.6

Q ss_pred             CEEEEEccc
Q 010847           93 TKLLILGGH  101 (499)
Q Consensus        93 ~~iyv~GG~  101 (499)
                      ++--|.||+
T Consensus       216 dk~~VvGGy  224 (1259)
T KOG0163|consen  216 DKGQVVGGY  224 (1259)
T ss_pred             CCCceechh
Confidence            333344443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=93.38  E-value=10  Score=38.52  Aligned_cols=190  Identities=10%  Similarity=0.025  Sum_probs=94.8

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.+++-+.+.....                .-.......-+..|++.....+    ...++.+|+.++....+
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~l  282 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPR----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQV  282 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCC----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEc
Confidence            468889998887665543321                0111122222455665533222    23599999999887776


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~G  202 (499)
                      ..   .+..... ....-++ .|++......    ...+|.+|+.+..-..+...+    .. ........ ++.|++.+
T Consensus       283 t~---~~~~~~~-~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~----~~-~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        283 TD---GRSNNTE-PTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEG----SQ-NQDADVSSDGKFMVMVS  349 (429)
T ss_pred             cC---CCCCcCc-eEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCC----CC-ccCEEECCCCCEEEEEE
Confidence            52   2211111 1112234 4544332211    347899999887766664321    11 11222223 34444433


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      ...+   ...++.+|+.++.+..+...  .   ........-+++.+++.+.+..  ...+++.++....=..++
T Consensus       350 ~~~g---~~~I~~~dl~~g~~~~Lt~~--~---~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        350 SNGG---QQHIAKQDLATGGVQVLTDT--F---LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             ccCC---CceEEEEECCCCCeEEeCCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence            3222   24699999999988877421  1   1111122235566666554322  235677776555444443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.37  E-value=0.43  Score=47.44  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~  477 (499)
                      ++++++++++.++.++.++|
T Consensus       120 ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752       120 QLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=93.36  E-value=8.6  Score=37.65  Aligned_cols=119  Identities=14%  Similarity=0.056  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC---CCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~---~~~  107 (499)
                      .+||.-...... .+.+.++|..+++-...-+.+.               .||  +.+..-+..||+.-.+...   +..
T Consensus        14 ~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~~   75 (352)
T TIGR02658        14 RVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGKR   75 (352)
T ss_pred             EEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCCC
Confidence            678876532222 2789999999866443333321               133  2344446789988764322   224


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCc-----c-eEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEE
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARG-----G-HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA  174 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~-----~-~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~  174 (499)
                      .+.+.+||+.|.+-..--..  ++.||.     - ..+..-++ .||+. ..+    ..+.+.+.|+.+.+-..
T Consensus        76 ~d~V~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~----p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        76 TDYVEVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-QFS----PSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCEEEEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEe-cCC----CCCEEEEEECCCCcEEE
Confidence            67799999999976543322  223331     1 12222244 57765 221    24678888888776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.35  E-value=2.1  Score=39.87  Aligned_cols=15  Identities=0%  Similarity=0.076  Sum_probs=5.5

Q ss_pred             hhhhHHHHHHhhccc
Q 010847          404 NSRFREKIDEVNSTH  418 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~  418 (499)
                      ...|..+++..+.++
T Consensus        51 ~~~L~~e~~~l~~e~   65 (251)
T PF11932_consen   51 KQELLAEYRQLEREI   65 (251)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.32  E-value=0.74  Score=45.18  Aligned_cols=9  Identities=22%  Similarity=0.398  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010847          383 IDAIKEDKR  391 (499)
Q Consensus       383 ~~~l~~~~~  391 (499)
                      ++.++...+
T Consensus       273 i~~lk~~n~  281 (622)
T COG5185         273 IANLKTQND  281 (622)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.30  E-value=0.99  Score=52.11  Aligned_cols=55  Identities=15%  Similarity=0.301  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhh
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  437 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (499)
                      .+.|.++...++..+.......++++..+...+..+.+..+++...+.+++..+.
T Consensus       602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (1201)
T PF12128_consen  602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQ  656 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3344444444444444444444555555555555555554444444444443333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.24  E-value=1.7  Score=40.71  Aligned_cols=7  Identities=14%  Similarity=0.183  Sum_probs=2.7

Q ss_pred             HHHHHhc
Q 010847          346 TAAYALA  352 (499)
Q Consensus       346 ~~~~~~~  352 (499)
                      .|.|.++
T Consensus        53 gwff~i~   59 (401)
T PF06785_consen   53 GWFFAIG   59 (401)
T ss_pred             HHHHHhh
Confidence            3344333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.20  E-value=3.5  Score=35.83  Aligned_cols=16  Identities=19%  Similarity=0.430  Sum_probs=6.2

Q ss_pred             HhhhhhHHHHHHhhcc
Q 010847          402 TENSRFREKIDEVNST  417 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~  417 (499)
                      ...++|..++..++.+
T Consensus        36 e~na~L~~e~~~L~~q   51 (193)
T PF14662_consen   36 EGNAQLAEEITDLRKQ   51 (193)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444443333333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.04  E-value=9.2  Score=37.10  Aligned_cols=146  Identities=17%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCC-CceEEeeeCcccccCccccCCCCCCCCCccceeEEE--ECCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~  107 (499)
                      ++|+..+.     -..+.+||+.+ +++..+.....                ....+.++.  -+..||+.+. .     
T Consensus         3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~-----   55 (330)
T PRK11028          3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P-----   55 (330)
T ss_pred             EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence            46666443     24578888863 67776655421                111112222  2455666433 2     


Q ss_pred             CceEEEEECC-CCcEEEeecCCCCCCCC-cceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCe-e-EEeeecCCCC
Q 010847          108 SMIVRFIDLE-TNLCGVMETSGKVPVAR-GGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPP  182 (499)
Q Consensus       108 ~~~~~~yd~~-t~~W~~~~~~g~~p~~r-~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W-~~~~~~~~~p  182 (499)
                      ...+..|++. ++.+..+..   .+.+- ..+.+..-++ .||+.. ..     .+.+.+|++.++. . ..+..   .+
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~---~~  123 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQI---IE  123 (330)
T ss_pred             CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceee---cc
Confidence            2337777765 556665542   22111 1222222234 466553 22     3567888875431 1 11211   11


Q ss_pred             CCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCC
Q 010847          183 APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT  220 (499)
Q Consensus       183 ~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~  220 (499)
                      .....|.++...+ +++|+.. .    ..+.+.+||+.+
T Consensus       124 ~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~  157 (330)
T PRK11028        124 GLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSD  157 (330)
T ss_pred             CCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECC
Confidence            1222344444434 4555543 2    235799999876

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.99  E-value=3.7  Score=33.68  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEE-CCCCc
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLN-MTKLA  272 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d-~~~~~  272 (499)
                      |+.+|-..-. .....+.|..||+.+.+|+.+..+...........++.++++|.++.-..... ..-++|+++ ..+..
T Consensus         5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~   83 (129)
T PF08268_consen    5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE   83 (129)
T ss_pred             CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence            5545554433 33445779999999999999854212334556667888899988875543322 345889884 66788


Q ss_pred             eEEecc
Q 010847          273 WSILTS  278 (499)
Q Consensus       273 W~~l~~  278 (499)
                      |.+...
T Consensus        84 Wsk~~~   89 (129)
T PF08268_consen   84 WSKKHI   89 (129)
T ss_pred             EEEEEE
Confidence            997633

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=92.95  E-value=1.5  Score=40.16  Aligned_cols=95  Identities=17%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccch-HHHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS-ELSK------ELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ++.|+.+.++.+..+.+-..++.+|+.+|-..++.=- |.-+      -|.+.+++.+++++-++-++..|.+.   -+-
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek---DkG  146 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK---DKG  146 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh---hhh
Confidence            4455555444444444433455555444443332211 0000      12233333444444444444443333   223


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847          456 SQTIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       456 ~~~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      +||...++....+.++.+.+..|-+
T Consensus       147 iQKYFvDINiQN~KLEsLLqsMElA  171 (305)
T PF15290_consen  147 IQKYFVDINIQNKKLESLLQSMELA  171 (305)
T ss_pred             HHHHHhhhhhhHhHHHHHHHHHHHH
Confidence            3444445555556666666655533

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=92.92  E-value=1.1  Score=45.17  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=11.7

Q ss_pred             cccccCCCceeeeec
Q 010847          482 SVQTQGSGGVWRWIA  496 (499)
Q Consensus       482 ~~q~q~~~~~~~~~~  496 (499)
                      .-|+++++++|-|.+
T Consensus       436 ~vqeKK~s~IWqFFS  450 (832)
T KOG2077|consen  436 AVQEKKRSSIWQFFS  450 (832)
T ss_pred             hhhhhccccHHHHHH
Confidence            457889999998753

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.87  E-value=2.9  Score=37.57  Aligned_cols=35  Identities=6%  Similarity=0.286  Sum_probs=17.9

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR  438 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (499)
                      .+.|..++++++.++.+++.+.+.++-+++..+++
T Consensus        47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek   81 (333)
T KOG1853|consen   47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKEK   81 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554444444443

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=92.86  E-value=1.5  Score=32.39  Aligned_cols=69  Identities=17%  Similarity=0.324  Sum_probs=43.8

Q ss_pred             hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010847          396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK  470 (499)
Q Consensus       396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~  470 (499)
                      .+...+.+...+..++...+....+.+..+.+.-++++..+.++.+|+.....++++      -++|+.++..++
T Consensus         5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~------YEeEI~rLr~eL   73 (79)
T PF08581_consen    5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ------YEEEIARLRREL   73 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            344444555556666666666777777777777778888788877777776555544      244454444443

; PDB: 3VP9_B 3VP8_B.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.86  E-value=3.3  Score=34.23  Aligned_cols=18  Identities=28%  Similarity=0.350  Sum_probs=7.0

Q ss_pred             hhhhhHHHHHHHHHHHHH
Q 010847          436 RSRCFKLEAQIAELQKML  453 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l  453 (499)
                      ++....++.++.+++.+.
T Consensus        65 r~e~~~~~~~~~~l~~~~   82 (132)
T PF07926_consen   65 REELQELQQEINELKAEA   82 (132)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333444443333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.82  E-value=3.6  Score=34.89  Aligned_cols=35  Identities=14%  Similarity=0.334  Sum_probs=12.5

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847          409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  443 (499)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (499)
                      .+++..+..++.++.++++.+.++...+.++..++
T Consensus        66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~  100 (151)
T PF11559_consen   66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQ  100 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PTZ00420 coronin; Provisional

Probab=92.77  E-value=15  Score=38.69  Aligned_cols=62  Identities=18%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          145 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       145 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      .+++.||.+      ..+.++|+.+.+=. ...  ..  +..-.++....++.+++.++.+     ..+.+||+.+..
T Consensus       139 ~iLaSgS~D------gtIrIWDl~tg~~~-~~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~  200 (568)
T PTZ00420        139 YIMCSSGFD------SFVNIWDIENEKRA-FQI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE  200 (568)
T ss_pred             eEEEEEeCC------CeEEEEECCCCcEE-EEE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence            455666654      35888898776421 111  11  1112223223355567666543     358999988764

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=92.63  E-value=4.4  Score=36.97  Aligned_cols=118  Identities=15%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             cceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEECCEEEEEcCcCC-------
Q 010847           84 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG--HSVTLVGSRLIIFGGEDR-------  154 (499)
Q Consensus        84 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~lyv~GG~~~-------  154 (499)
                      +..|+-.+++.||+.--.......-+.+.+.+..-..|+.+.    .|.....  .-.+.+++.||+||-.-.       
T Consensus       192 sEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G  267 (367)
T PF12217_consen  192 SEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGG  267 (367)
T ss_dssp             EEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE-SSTT-SSTT
T ss_pred             ccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEeccccccccccC
Confidence            344566779999988544433333567888888888999995    4433332  234667999999985321       


Q ss_pred             ---CCC--ccCcEEE--E-----ECCCCeeEEeee---cCCCCCCCccceEEEEcCcEE-EEEcCCC
Q 010847          155 ---SRK--LLNDVHF--L-----DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS  205 (499)
Q Consensus       155 ---~~~--~~~~v~~--y-----d~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~  205 (499)
                         ++-  .....+.  .     ++..-+|..+..   .|.......+...+++.|+.| |+|||-+
T Consensus       268 ~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  268 EPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             -----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             CCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence               110  0111122  1     344556766653   233344445556666667755 6889854

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.58  E-value=2.5  Score=40.99  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh
Q 010847          386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC  439 (499)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (499)
                      +..+....++.......+...++.+-+.....+++.|-+|+.+++++.++.+++
T Consensus        18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~   71 (459)
T KOG0288|consen   18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER   71 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444445555555555556666666655554443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=92.55  E-value=3.7  Score=41.70  Aligned_cols=122  Identities=16%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCCccceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC--CEEEEEeCCCCCCC
Q 010847          183 APRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNG  259 (499)
Q Consensus       183 ~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~  259 (499)
                      .|+.+.-++...-. -||+.|-      -+++|++|++.+.|-.+-     ..-...--++.++  +.|+.+||-++   
T Consensus       132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~~hgLla~Gt~~g---  197 (703)
T KOG2321|consen  132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINEEHGLLACGTEDG---  197 (703)
T ss_pred             cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccc-----ccccccceeeeecCccceEEecccCc---
Confidence            45555555554322 2555442      258999999999986531     1111222334443  46788877443   


Q ss_pred             cceEEEEECCCCceEEeccCCCC---CCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          260 CQETIVLNMTKLAWSILTSVKGR---NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       260 ~~~~~~~d~~~~~W~~l~~~~~~---~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                        .+..+|+.+.+-...-..+..   .|..-...+..++...++..-+-+|-.+|    .+++||+..
T Consensus       198 --~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa  259 (703)
T KOG2321|consen  198 --VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRA  259 (703)
T ss_pred             --eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEccc
Confidence              356667655432211111111   11111122333444444334444554444    677777743

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=92.55  E-value=1.5  Score=37.92  Aligned_cols=21  Identities=14%  Similarity=0.291  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .|+.+...++.|+.++.+++.
T Consensus       158 aL~~e~~aaqaQL~~lQ~qv~  178 (192)
T PF11180_consen  158 ALEAERRAAQAQLRQLQRQVR  178 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455555555666665555554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.50  E-value=2.4  Score=45.25  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHH
Q 010847          423 KELSSVQGQLVAERSRCFKLEAQI  446 (499)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~  446 (499)
                      +..+.++.+++.++||+++|+-.+
T Consensus       325 ERaesLQ~eve~lkEr~deletdl  348 (1243)
T KOG0971|consen  325 ERAESLQQEVEALKERVDELETDL  348 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777777777775544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=92.42  E-value=14  Score=37.56  Aligned_cols=149  Identities=9%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..++.+|+.+++-..+.   ..+..... ....-++ +|++.....+    ..+++.+|+.+.....+...   +.  ..
T Consensus       223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~  289 (429)
T PRK03629        223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN  289 (429)
T ss_pred             cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence            45999999888766664   23222111 1222233 5655433221    23699999998887766431   11  11


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      .......++..++|......  ...+|.+|+.+..-..+...+    .........-+++.+++.+...  ...+++++|
T Consensus       290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d  361 (429)
T PRK03629        290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD  361 (429)
T ss_pred             CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence            12222234433444322111  247999999887766653211    1111112222344444433222  134689999


Q ss_pred             CCCCceEEecc
Q 010847          268 MTKLAWSILTS  278 (499)
Q Consensus       268 ~~~~~W~~l~~  278 (499)
                      +.++.+..+..
T Consensus       362 l~~g~~~~Lt~  372 (429)
T PRK03629        362 LATGGVQVLTD  372 (429)
T ss_pred             CCCCCeEEeCC
Confidence            99998887763

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=92.42  E-value=1.2  Score=42.98  Aligned_cols=9  Identities=11%  Similarity=0.279  Sum_probs=3.4

Q ss_pred             HHHHHHHhH
Q 010847          462 EVQILRQQK  470 (499)
Q Consensus       462 e~~~~~~~~  470 (499)
                      ++.|+.++.
T Consensus       279 k~~qy~~Ee  287 (552)
T KOG2129|consen  279 KLMQYRAEE  287 (552)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.29  E-value=2.3  Score=39.40  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhcc
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNST  417 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (499)
                      +.++++..+.....+.+.......|..+....+..
T Consensus        14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee   48 (246)
T PF00769_consen   14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE   48 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443333444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.28  E-value=0.87  Score=49.98  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             hhhhhHHHHHHhhccchHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847          403 ENSRFREKIDEVNSTHSEL-SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  471 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~  471 (499)
                      +...++.++++++.++.+. .+-+...+.+.+..+.++..++.++.++++++..+...+.++.+++++.+
T Consensus       317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~  386 (754)
T TIGR01005       317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA  386 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence            3445555555555544332 22223334455555566666666666666665555544444444444444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=92.20  E-value=1.9  Score=41.30  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=15.9

Q ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHHHHhhh
Q 010847          406 RFREKIDEVNSTHSELSKELSSVQGQLVAERS  437 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (499)
                      .|+..|+..-+++.+++++..+.++.++.-++
T Consensus       289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe  320 (442)
T PF06637_consen  289 SLRAGIERVARENSDLQRQKLEAEQGLQASQE  320 (442)
T ss_pred             HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555444444443333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.16  E-value=3.5  Score=38.01  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      ..+...+.......+..+.+..+...++...+|...++.++.+++.+|..+
T Consensus       103 ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~  153 (237)
T PF00261_consen  103 EAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV  153 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence            333333333444444444444455555555555555555555544444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.16  E-value=3.7  Score=38.74  Aligned_cols=46  Identities=24%  Similarity=0.243  Sum_probs=23.8

Q ss_pred             HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ...+.++..+..++.....++...++.+..|..++.+++++++..-
T Consensus       209 ~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~  254 (306)
T PF04849_consen  209 SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA  254 (306)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444455555455555555555555555555555554443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=92.16  E-value=9.2  Score=34.98  Aligned_cols=263  Identities=13%  Similarity=0.131  Sum_probs=106.2

Q ss_pred             EEcCCCCCcccCcEEEEEcCC-CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcc-cCCCCCCCceE
Q 010847           34 IVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG-HYKKSSDSMIV  111 (499)
Q Consensus        34 ~~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG-~~~~~~~~~~~  111 (499)
                      +.|-..+-..+.-.|+-.... ++|+...-+.+.        ++..|...-.+.++-+++|+||+.=- .+-........
T Consensus        33 M~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--------H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~  104 (367)
T PF12217_consen   33 MAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--------HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRA  104 (367)
T ss_dssp             EEESSSSSTT-EEEEEEESSTTSS----EESS-----------TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEE
T ss_pred             ccccccCccceEEEEEEecCCCCcccCchhhhhc--------CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhh
Confidence            444444444444455555543 578776554432        11222223345567788999997632 11111113334


Q ss_pred             EEEE---CCCCcEEEeecCCCCCC-------CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEe------
Q 010847          112 RFID---LETNLCGVMETSGKVPV-------ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV------  175 (499)
Q Consensus       112 ~~yd---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~------  175 (499)
                      ..|+   ...+.|..-... ..|.       ...-|+.+.+++.-|.+|=.+++-. -.++=.+-. ++.|...      
T Consensus       105 ~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s~~~~sp~~~vrr  181 (367)
T PF12217_consen  105 ELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-SDAFASPGVFVRR  181 (367)
T ss_dssp             EEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-TTTTT-TT--EEE
T ss_pred             hhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-cccccCCcceeee
Confidence            4444   567888764421 2333       3455778888887777763332211 112211111 1112111      


Q ss_pred             eecCCCCCCCccceEEEEcCcEEEEEcC-CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCC
Q 010847          176 EVTQTPPAPRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG  254 (499)
Q Consensus       176 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG-~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~  254 (499)
                      ......-...+..++-.+ ++.||+.-- ......-..+++-+.....|+.+..+  -..-....-.+.+++.||+||--
T Consensus       182 ~i~sey~~~AsEPCvkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsE  258 (367)
T PF12217_consen  182 IIPSEYERNASEPCVKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSE  258 (367)
T ss_dssp             E--GGG-TTEEEEEEEEE-TTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-
T ss_pred             echhhhccccccchhhhh-CCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEecc
Confidence            100111112223333344 666887763 33334445677877777889987431  11112222356779999999953


Q ss_pred             CC---------CCC----cceEEEE-------ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847          255 DN---------NNG----CQETIVL-------NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  310 (499)
Q Consensus       255 ~~---------~~~----~~~~~~~-------d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~  310 (499)
                      ..         ++.    ....+..       ++..-+|..+.+---.......+....++++.++-..++|||.+
T Consensus       259 RA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  259 RAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             ccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence            11         111    1122222       33445565554321111112233445566666655568899975

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.11  E-value=2.2  Score=39.45  Aligned_cols=11  Identities=36%  Similarity=0.528  Sum_probs=4.0

Q ss_pred             hhhhhHHHHHH
Q 010847          403 ENSRFREKIDE  413 (499)
Q Consensus       403 ~~~~l~~~~~~  413 (499)
                      +..+.+..+..
T Consensus        20 e~~~a~~~L~e   30 (246)
T PF00769_consen   20 EMRRAQEALEE   30 (246)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=92.07  E-value=14  Score=37.03  Aligned_cols=148  Identities=13%  Similarity=0.089  Sum_probs=78.3

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..++++|+.++.-..+.   ..+..... ....-+ ..|++......    ..+++.+|+.+.....+.....   ....
T Consensus       214 ~~i~v~d~~~g~~~~~~---~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~~  282 (417)
T TIGR02800       214 PEIYVQDLATGQREKVA---SFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDTE  282 (417)
T ss_pred             cEEEEEECCCCCEEEee---cCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCCC
Confidence            46999999998766665   22222222 112223 35665533221    3579999999887766643211   1111


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEE-EECCEEEEEeCCCCCCCcceEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      . ...-++..|++.....+   ...+|.+|+.+..+..+...+     ......+ .-+++.+++.....  ....++++
T Consensus       283 ~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~  351 (417)
T TIGR02800       283 P-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVM  351 (417)
T ss_pred             E-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence            1 11113444444433222   247999999888877764211     1111222 22445555544322  23478999


Q ss_pred             ECCCCceEEecc
Q 010847          267 NMTKLAWSILTS  278 (499)
Q Consensus       267 d~~~~~W~~l~~  278 (499)
                      |+.+..+..+..
T Consensus       352 d~~~~~~~~l~~  363 (417)
T TIGR02800       352 DLDGGGERVLTD  363 (417)
T ss_pred             eCCCCCeEEccC
Confidence            998877766643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=92.07  E-value=2.8  Score=36.35  Aligned_cols=19  Identities=11%  Similarity=0.309  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q 010847          459 IENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~  477 (499)
                      .+.++.++++++.+|+.+.
T Consensus       166 aqaQL~~lQ~qv~~Lq~q~  184 (192)
T PF11180_consen  166 AQAQLRQLQRQVRQLQRQA  184 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3444555555555555544

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=92.00  E-value=3.3  Score=41.72  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             hhhhhHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccc-ccCCCceee
Q 010847          436 RSRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQ-TQGSGGVWR  493 (499)
Q Consensus       436 ~~~~~~~~~~~~e-~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q-~q~~~~~~~  493 (499)
                      ++..+++++++++ ..+..++...+.+++.+++...+++.++...+++.. -.+.+|.||
T Consensus       138 ~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG  197 (448)
T COG1322         138 REVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG  197 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence            4455555555555 444455555666666666666666666644333221 277889987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=91.94  E-value=23  Score=39.17  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++.+++.||.++      .+.+||+.++.-...-   ...   ....++.+   ++.+++.|+.+      +.+.+||+.
T Consensus       587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~---~~~---~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~  648 (793)
T PLN00181        587 DPTLLASGSDDG------SVKLWSINQGVSIGTI---KTK---ANICCVQFPSESGRSLAFGSAD------HKVYYYDLR  648 (793)
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCcEEEEE---ecC---CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence            456777777543      3888888765432111   111   11222222   35677777653      368999986


Q ss_pred             CC
Q 010847          169 TM  170 (499)
Q Consensus       169 t~  170 (499)
                      +.
T Consensus       649 ~~  650 (793)
T PLN00181        649 NP  650 (793)
T ss_pred             CC
Confidence            54

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.92  E-value=4.9  Score=31.26  Aligned_cols=35  Identities=34%  Similarity=0.440  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          421 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ++..++.++.+......++.+++.++.++.+.+..
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566666666677777777777777666544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.89  E-value=1.6  Score=45.41  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847          424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  471 (499)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~  471 (499)
                      .+.+.+.++..++.++..++.++.++++++..+...+.++.+++++.+
T Consensus       318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~  365 (498)
T TIGR03007       318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE  365 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            344445555555555666666666666665554445555555555444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=91.86  E-value=6.8  Score=33.35  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN  461 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~  461 (499)
                      ...++-++...++++..|..+-.++++.|+.+...-+
T Consensus        86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie  122 (159)
T PF05384_consen   86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIE  122 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555566666665555556665555554333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.85  E-value=3.8  Score=36.12  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ...++..+.....+++..+.+++..+.+.+.+++++..++.++.+++..+..
T Consensus        54 ~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   54 IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC  105 (202)
T ss_pred             HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence            3334444444444444444555555555555555555556555555555544

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=91.80  E-value=2.2  Score=38.43  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847          379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT  458 (499)
Q Consensus       379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  458 (499)
                      +...++.|.++.+++=....+  ..+.+|..++.-.+...+++....+++-..++++.+.++-++..+--++++|++.++
T Consensus       215 LMAKCR~L~qENeElG~q~s~--Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~  292 (330)
T KOG2991|consen  215 LMAKCRTLQQENEELGHQASE--GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK  292 (330)
T ss_pred             HHHHHHHHHHHHHHHHhhhhc--ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            444455565555554333222  355667777777777777777777777777777777777777777777777665554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=91.69  E-value=1.7  Score=46.15  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHH
Q 010847          381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  442 (499)
Q Consensus       381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (499)
                      .++..++.+.+.....+...+.+..+|.....++....+..+.+...++.++...+.|+..+
T Consensus        34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl   95 (717)
T PF09730_consen   34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL   95 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555555555555556666666666665555555555555555555555444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.60  E-value=5.3  Score=31.05  Aligned_cols=54  Identities=17%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      ....|...++..+....++.++..+++..+..++..-....+.+.+++.++.++
T Consensus        17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea   70 (107)
T PF09304_consen   17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA   70 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=91.57  E-value=1.4  Score=42.71  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=9.9

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010847          461 NEVQILRQQKSAFEQEME  478 (499)
Q Consensus       461 ~e~~~~~~~~~~~~~~~~  478 (499)
                      +|+++++.+++.-|.+++
T Consensus       309 kelE~lR~~L~kAEkele  326 (575)
T KOG4403|consen  309 KELEQLRVALEKAEKELE  326 (575)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555555555555554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.56  E-value=2.2  Score=47.00  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847          458 TIENEVQILRQQKSAFEQEMERATSV  483 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~~~~  483 (499)
                      +++.++.++.++++.+++++++....
T Consensus       444 ~~~~ei~~L~~~~~~~~~~l~e~~~~  469 (1293)
T KOG0996|consen  444 KCQTEIEQLEELLEKEERELDEILDS  469 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555444333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.55  E-value=2.4  Score=30.79  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=8.7

Q ss_pred             hhhhHHHHHHhhccchHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      +.-|+.++++.+.++..+.++
T Consensus        20 I~LLqmEieELKekn~~L~~e   40 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQE   40 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=91.52  E-value=11  Score=34.33  Aligned_cols=91  Identities=21%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CceEEeeeCcccccCccccCCCCCCCCCccce-eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCC
Q 010847           55 LAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA  133 (499)
Q Consensus        55 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~  133 (499)
                      -.|+..+|+..           +..+.|-.+. .+..-.|.|+..||.       ..+|..|+.+++....-    .-..
T Consensus        99 ~lwe~~~P~~~-----------~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHt  156 (325)
T KOG0649|consen   99 RLWEVKIPMQV-----------DAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHT  156 (325)
T ss_pred             hhhhhcCcccc-----------CcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCc
Confidence            35777777653           2233443333 233357899999974       34899999999876653    1112


Q ss_pred             CcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeE
Q 010847          134 RGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWD  173 (499)
Q Consensus       134 r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~  173 (499)
                      -+-|+++.-+. -=++-|+.++      .+.++|..|.+-.
T Consensus       157 DYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v  191 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHV  191 (325)
T ss_pred             ceeeeeeecccCcceeecCCCc------cEEEEecccccee
Confidence            23344444332 2334455443      4677787776643

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=91.51  E-value=4.3  Score=36.94  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             HHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847          398 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  443 (499)
Q Consensus       398 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (499)
                      +....+.++++.++........++...++..+.+++..++|.+.|+
T Consensus       115 q~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq  160 (338)
T KOG3647|consen  115 QAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ  160 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445555555555555555555555555556665555555553

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.48  E-value=12  Score=34.80  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             CCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC--CEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          210 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       210 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      ...+++||+++.+|.+..    +|......-...++  +++++.     .-..+.+.+||+.+.+.+.++.
T Consensus       253 ~g~l~rfdPs~~sW~eyp----LPgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYP----LPGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             CceeeEeCcccccceeee----CCCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence            456899999999999863    33222222223333  345542     1124568899999999988754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=91.48  E-value=11  Score=34.46  Aligned_cols=186  Identities=16%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      +..++.|+.+      ..+.+||..++.....-   ... ...-.++... ++.+++.|+.      ...+.+||+.+.+
T Consensus        63 ~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~  126 (289)
T cd00200          63 GTYLASGSSD------KTIRLWDLETGECVRTL---TGH-TSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK  126 (289)
T ss_pred             CCEEEEEcCC------CeEEEEEcCcccceEEE---ecc-CCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE
Confidence            3455566542      34888998875322221   111 1111222222 2356666652      2468899987654


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI  250 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v  250 (499)
                      -...-.    .....-.++....++.+++.|..+     +.+.+||+.+..-...-  .  .....-.++.... +..++
T Consensus       127 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~l~  193 (289)
T cd00200         127 CLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL--T--GHTGEVNSVAFSPDGEKLL  193 (289)
T ss_pred             EEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE--e--cCccccceEEECCCcCEEE
Confidence            322211    111111222223334344444322     36889998654321110  0  1111112233333 33555


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +++.+     ..+.+||+.+.....  .....      ......+....+..+++.++.++    .+.+|++..
T Consensus       194 ~~~~~-----~~i~i~d~~~~~~~~--~~~~~------~~~i~~~~~~~~~~~~~~~~~~~----~i~i~~~~~  250 (289)
T cd00200         194 SSSSD-----GTIKLWDLSTGKCLG--TLRGH------ENGVNSVAFSPDGYLLASGSEDG----TIRVWDLRT  250 (289)
T ss_pred             EecCC-----CcEEEEECCCCceec--chhhc------CCceEEEEEcCCCcEEEEEcCCC----cEEEEEcCC
Confidence            65542     257888887643322  11110      01122233333345566565343    677788754

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.44  E-value=4.2  Score=39.28  Aligned_cols=72  Identities=25%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHHHHHHH
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--------~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      -...+...+.++.+....++.++.++..++.+...|+.++.+++.++....        .++.++.++..+.+....+.+
T Consensus       207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555666555555666666655554443322        455555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=91.44  E-value=3.2  Score=39.46  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=26.0

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  454 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  454 (499)
                      +.-|+..+++.++.+.+..+++.+...+++.+++....++.++.+++.+|.
T Consensus       114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~  164 (302)
T PF09738_consen  114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK  164 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554444555555555555555544444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=91.42  E-value=2.8  Score=46.03  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=12.1

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHH
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQL  432 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~  432 (499)
                      +..++++++.+++.+++++.+++..+
T Consensus       446 ~~~~ieele~el~~~~~~l~~~~e~~  471 (1041)
T KOG0243|consen  446 MAEQIEELEEELENLEKQLKDLTELY  471 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555444444433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.35  E-value=6.1  Score=31.91  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=14.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHH
Q 010847          435 ERSRCFKLEAQIAELQKMLESSQTIE  460 (499)
Q Consensus       435 ~~~~~~~~~~~~~e~~~~l~~~~~~~  460 (499)
                      ...+...++.++++++++.+.+-++-
T Consensus        66 ~~~~~~~L~~el~~l~~ry~t~Lell   91 (120)
T PF12325_consen   66 LKKEVEELEQELEELQQRYQTLLELL   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566666666666655555443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=91.31  E-value=5.2  Score=37.15  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +..+......+..++++...++.-.+++|+.+|
T Consensus       185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq  217 (267)
T PF10234_consen  185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQ  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444444455544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK04043 tolB translocation protein TolB; Provisional

Probab=91.27  E-value=18  Score=36.56  Aligned_cols=185  Identities=11%  Similarity=0.040  Sum_probs=97.7

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..+|++|+.++.=+.+.   ..+. ........-++ +|++.-...+    ..++|.+|+.+..++.+...   + . ..
T Consensus       213 ~~Iyv~dl~tg~~~~lt---~~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~-~-~d  279 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIA---SSQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---P-G-ID  279 (419)
T ss_pred             CEEEEEECCCCcEEEEe---cCCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---C-C-cc
Confidence            36999999888766665   2221 11111222233 5655433221    35899999999998887532   1 1 11


Q ss_pred             ceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC---CcceE
Q 010847          188 HSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN---GCQET  263 (499)
Q Consensus       188 ~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~---~~~~~  263 (499)
                      ....... ++.|++.....+   ...||++|+.++..+.+...+.     +......-++.++.........   ...++
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I  351 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNL  351 (419)
T ss_pred             CccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence            1122222 445665543322   3589999999998877643221     2222222233444443322111   23589


Q ss_pred             EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      +++|+.++.+..|.....        ........++. .|+.....  .....++.++++.+
T Consensus       352 ~v~d~~~g~~~~LT~~~~--------~~~p~~SPDG~-~I~f~~~~--~~~~~L~~~~l~g~  402 (419)
T PRK04043        352 YLISTNSDYIRRLTANGV--------NQFPRFSSDGG-SIMFIKYL--GNQSALGIIRLNYN  402 (419)
T ss_pred             EEEECCCCCeEECCCCCC--------cCCeEECCCCC-EEEEEEcc--CCcEEEEEEecCCC
Confidence            999999999888765311        11123334443 33333322  22346888887654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.25  E-value=3  Score=44.54  Aligned_cols=30  Identities=17%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847          457 QTIENEVQILRQQKSAFEQEMERATSVQTQ  486 (499)
Q Consensus       457 ~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q  486 (499)
                      ..|+.|++-+.++.+.++.++|=+.+..+.
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367777777777777777777644433333

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=91.24  E-value=7.3  Score=31.94  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=56.6

Q ss_pred             EEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEE-C
Q 010847           89 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD-L  167 (499)
Q Consensus        89 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd-~  167 (499)
                      +.++|-||..+-.  .......+..||..+.+|+.+..............++.++|+|-++.-........=++|+++ .
T Consensus         2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            4568888877665  112256699999999999988631112345566677788998877654332211234688884 5


Q ss_pred             CCCeeEEeee
Q 010847          168 ETMTWDAVEV  177 (499)
Q Consensus       168 ~t~~W~~~~~  177 (499)
                      ....|++...
T Consensus        80 ~k~~Wsk~~~   89 (129)
T PF08268_consen   80 EKQEWSKKHI   89 (129)
T ss_pred             ccceEEEEEE
Confidence            5678997755

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=91.22  E-value=11  Score=34.13  Aligned_cols=141  Identities=18%  Similarity=0.217  Sum_probs=75.8

Q ss_pred             CCcEEEeec--CCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc
Q 010847          118 TNLCGVMET--SGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       118 t~~W~~~~~--~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~  194 (499)
                      ...|+...+  .+..+.|-.+..... -.|.|+..||-       ..+|+.|+++++.+..-- |   ..-+-|+.+.-+
T Consensus        98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~r-G---HtDYvH~vv~R~  166 (325)
T KOG0649|consen   98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYR-G---HTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEc-C---Ccceeeeeeecc
Confidence            445776653  223444444443333 46788888873       258999999999876542 2   234455555533


Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCceEec-cc--CCCCCCcCccc--EEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EI--KGDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~-~~--~~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                      ..-=++-|+-++     .+-++|.+|.+-..+ +.  ...+..|-.+-  .+...+..++|+||+-      .+-++++.
T Consensus       167 ~~~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLr  235 (325)
T KOG0649|consen  167 ANGQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLR  235 (325)
T ss_pred             cCcceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEecc
Confidence            222344455443     467778877765442 11  11122222222  3444566788888853      24455665


Q ss_pred             CCceEEeccCC
Q 010847          270 KLAWSILTSVK  280 (499)
Q Consensus       270 ~~~W~~l~~~~  280 (499)
                      +.+-+.+-++|
T Consensus       236 sse~t~vfpip  246 (325)
T KOG0649|consen  236 SSESTCVFPIP  246 (325)
T ss_pred             CCCceEEEecc
Confidence            55555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=91.19  E-value=2.7  Score=41.42  Aligned_cols=20  Identities=10%  Similarity=0.292  Sum_probs=7.4

Q ss_pred             hHHHHHHhhccchHHHHHHH
Q 010847          407 FREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~  426 (499)
                      +...++.+++-+..-.+.|+
T Consensus       388 ~~k~lqnLqe~la~tqk~Lq  407 (527)
T PF15066_consen  388 IEKTLQNLQEALANTQKHLQ  407 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.19  E-value=4.6  Score=39.88  Aligned_cols=18  Identities=28%  Similarity=0.344  Sum_probs=7.5

Q ss_pred             hHHHHHHHHHHHHHHhHH
Q 010847          440 FKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       440 ~~~~~~~~e~~~~l~~~~  457 (499)
                      .+++.++...+++++++.
T Consensus       213 ~~l~~~l~~~q~~l~eL~  230 (420)
T COG4942         213 AQLNSELSADQKKLEELR  230 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.19  E-value=2.4  Score=45.62  Aligned_cols=11  Identities=18%  Similarity=0.607  Sum_probs=5.5

Q ss_pred             EEEEcccCCCC
Q 010847           95 LLILGGHYKKS  105 (499)
Q Consensus        95 iyv~GG~~~~~  105 (499)
                      +.+++|.++.+
T Consensus        30 ~~~i~G~Ng~G   40 (650)
T TIGR03185        30 IILIGGLNGAG   40 (650)
T ss_pred             EEEEECCCCCC
Confidence            45555554444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.16  E-value=5.7  Score=38.32  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      +...+..++.++.++..++.+...++.++..++ .+..+.+.++..+..++.++.
T Consensus       218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~  272 (312)
T PF00038_consen  218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELA  272 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence            333333333333333333333344444443333 333444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=91.11  E-value=1.7  Score=42.04  Aligned_cols=11  Identities=18%  Similarity=0.410  Sum_probs=4.1

Q ss_pred             hHHHHHHHHHH
Q 010847          419 SELSKELSSVQ  429 (499)
Q Consensus       419 ~~~~~~~~~~~  429 (499)
                      +.+.++.-++.
T Consensus       182 eQLRre~V~le  192 (552)
T KOG2129|consen  182 EQLRREAVQLE  192 (552)
T ss_pred             HHHHHHHHHHh
Confidence            33333333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.10  E-value=3.6  Score=39.42  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=18.2

Q ss_pred             HHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847          401 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR  438 (499)
Q Consensus       401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (499)
                      +.+...++..++..+.++++..+++.+.+..++..+..
T Consensus        69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~  106 (302)
T PF10186_consen   69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR  106 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555544444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=91.06  E-value=13  Score=34.52  Aligned_cols=162  Identities=14%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEEC-----CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDL-----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  166 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd  166 (499)
                      .+++|++.|..+.     .+..|..     ..+.....-   .+|.+-.|...++.++.+|+--.      .++.|..||
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd   95 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD   95 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence            4679999886654     3666642     222333332   57777788888889999988643      367899999


Q ss_pred             CCCCeeE---EeeecCC---CCCCCcc---ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc----eEecccCCCCC
Q 010847          167 LETMTWD---AVEVTQT---PPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKGDLV  233 (499)
Q Consensus       167 ~~t~~W~---~~~~~~~---~p~~r~~---~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~~~p  233 (499)
                      +.+..-.   .++-.+.   .|-...+   .-.++..++ |.++=........-.+-.+|+.+..    |..     ..+
T Consensus        96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~  169 (250)
T PF02191_consen   96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP  169 (250)
T ss_pred             CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence            9988655   2321111   1111111   223333455 6666444332212235566666543    543     133


Q ss_pred             CcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEE
Q 010847          234 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       234 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  275 (499)
                      .+..+. +.++-+.||++-..+... ..-.+.||+.++.=..
T Consensus       170 k~~~~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~  209 (250)
T PF02191_consen  170 KRSAGN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED  209 (250)
T ss_pred             chhhcc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence            333332 444457788776544332 3345799998876543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.02  E-value=3  Score=49.37  Aligned_cols=20  Identities=20%  Similarity=0.347  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHH
Q 010847          459 IENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~~  478 (499)
                      ++++...+..+++.+.++++
T Consensus      1123 ~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1123 AERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.96  E-value=2  Score=39.59  Aligned_cols=16  Identities=38%  Similarity=0.542  Sum_probs=7.3

Q ss_pred             HHHHhHHHHHHHHHHh
Q 010847          465 ILRQQKSAFEQEMERA  480 (499)
Q Consensus       465 ~~~~~~~~~~~~~~~~  480 (499)
                      ...+++..++..++++
T Consensus       117 E~~rkl~~~E~~Le~a  132 (237)
T PF00261_consen  117 EVERKLKVLEQELERA  132 (237)
T ss_dssp             HCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444445554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.84  E-value=14  Score=34.63  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=68.8

Q ss_pred             cCcEEEEEcCCCc----eEEeeeCcccccCccccCCCCCCCCCcccee-EEEE---CCEEEEEcccCCCCCCCceEEEEE
Q 010847           44 LSDVQVFDLRSLA----WSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW---GTKLLILGGHYKKSSDSMIVRFID  115 (499)
Q Consensus        44 ~~~~~~yd~~t~~----W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s-~~~~---~~~iyv~GG~~~~~~~~~~~~~yd  115 (499)
                      ++.|+.||..+++    |+.----                +..-.+-. -..+   ++.|++.=+ +++.  .--+|..|
T Consensus        77 YSHVH~yd~e~~~VrLLWkesih~----------------~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~--nLGvy~ld  137 (339)
T PF09910_consen   77 YSHVHEYDTENDSVRLLWKESIHD----------------KTKWAGEVSDILYDPYEDRLLLARA-DGHA--NLGVYSLD  137 (339)
T ss_pred             cceEEEEEcCCCeEEEEEecccCC----------------ccccccchhheeeCCCcCEEEEEec-CCcc--eeeeEEEc
Confidence            5679999998887    5442211                11112221 1222   577777643 2222  33488899


Q ss_pred             CCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee--EEeeec----CCCCCCCccce
Q 010847          116 LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT----QTPPAPRYDHS  189 (499)
Q Consensus       116 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~----~~~p~~r~~~~  189 (499)
                      ..++.-+.+.   .-|...   .+...+..+|-+   ..-..-.+.+.|||+.+++|  ......    |.....+....
T Consensus       138 r~~g~~~~L~---~~ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~  208 (339)
T PF09910_consen  138 RRTGKAEKLS---SNPSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGA  208 (339)
T ss_pred             ccCCceeecc---CCCCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeecccc
Confidence            9999888887   444331   122223333322   22222367899999999999  433321    12222333444


Q ss_pred             EEEEcCcEEEEEcC
Q 010847          190 AALHANRYLIVFGG  203 (499)
Q Consensus       190 ~~~~~~~~l~v~GG  203 (499)
                      ++...+..+..++|
T Consensus       209 ~~s~ynR~faF~rG  222 (339)
T PF09910_consen  209 MASAYNRLFAFVRG  222 (339)
T ss_pred             EEEEeeeEEEEEec
Confidence            55554553333343

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.79  E-value=2  Score=46.21  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHH
Q 010847          410 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      ++++++.++.+.+.+.+.+.++....+.++.+++.++.+++++++..- .+.++.+++.+++..++.+++
T Consensus       210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~  279 (650)
T TIGR03185       210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARK  279 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333444444433333332221 233333444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.65  E-value=0.93  Score=46.92  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=11.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQT  458 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~~  458 (499)
                      .++.++++.+++++..+|+.+.+
T Consensus       162 eer~~kl~~~~qe~naeL~rarq  184 (916)
T KOG0249|consen  162 EERTRKLEEQLEELNAELQRARQ  184 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555544443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.32  E-value=16  Score=34.29  Aligned_cols=147  Identities=20%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+|+.++.     .+.+.+||+.++.....-+..               ..++ ..+....++.+|+.++.      ...
T Consensus        44 ~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~---------------~~~~-~~~~~~~g~~l~~~~~~------~~~   96 (300)
T TIGR03866        44 LLYVCASD-----SDTIQVIDLATGEVIGTLPSG---------------PDPE-LFALHPNGKILYIANED------DNL   96 (300)
T ss_pred             EEEEEECC-----CCeEEEEECCCCcEEEeccCC---------------CCcc-EEEECCCCCEEEEEcCC------CCe
Confidence            56666653     235888999988764421111               0111 11111224567666542      234


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      +.+||+.+..-...     .+......+++. -++.+++++..+     .+.++.||..+..-......+..|     ..
T Consensus        97 l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-----~~  161 (300)
T TIGR03866        97 VTVIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTYEIVDNVLVDQRP-----RF  161 (300)
T ss_pred             EEEEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCCeEEEEEEcCCCc-----cE
Confidence            99999987642211     111111122222 355666665432     224667787765432221111111     12


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      +....++..+++++...    +.+..||+.+.+.
T Consensus       162 ~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~  191 (300)
T TIGR03866       162 AEFTADGKELWVSSEIG----GTVSVIDVATRKV  191 (300)
T ss_pred             EEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence            22222443444443221    3689999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.27  E-value=3.3  Score=47.83  Aligned_cols=7  Identities=14%  Similarity=0.354  Sum_probs=3.5

Q ss_pred             ECCEEEE
Q 010847          244 IDENWYI  250 (499)
Q Consensus       244 ~~~~l~v  250 (499)
                      +..+++.
T Consensus       100 v~Rri~r  106 (1163)
T COG1196         100 VTRRIYR  106 (1163)
T ss_pred             EEEEEEE
Confidence            3445555

>TIGR01069 mutS2 MutS2 family protein

Probab=90.26  E-value=3.9  Score=44.70  Aligned_cols=8  Identities=25%  Similarity=-0.155  Sum_probs=3.2

Q ss_pred             CCceeeee
Q 010847          488 SGGVWRWI  495 (499)
Q Consensus       488 ~~~~~~~~  495 (499)
                      .-|-.=||
T Consensus       626 ~~Gd~V~v  633 (771)
T TIGR01069       626 KIGDKVRI  633 (771)
T ss_pred             CCCCEEEE
Confidence            33443343

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.24  E-value=6  Score=38.78  Aligned_cols=45  Identities=20%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHH
Q 010847          377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  421 (499)
Q Consensus       377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  421 (499)
                      ++-+..+++++.-+..++..+...+.+..++..++...-..++..
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR  260 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR  260 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666666666665555555555555544444444433333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.23  E-value=2.8  Score=39.95  Aligned_cols=13  Identities=8%  Similarity=0.350  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHhHH
Q 010847          459 IENEVQILRQQKS  471 (499)
Q Consensus       459 ~~~e~~~~~~~~~  471 (499)
                      +.++.++++...+
T Consensus       138 ~~~q~~qLe~d~q  150 (319)
T PF09789_consen  138 LREQIEQLERDLQ  150 (319)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=90.08  E-value=3.3  Score=45.54  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=9.0

Q ss_pred             ccCcEEEEEcCC-CceEEee
Q 010847           43 FLSDVQVFDLRS-LAWSNLR   61 (499)
Q Consensus        43 ~~~~~~~yd~~t-~~W~~~~   61 (499)
                      .++-+..||+.+ .-|..+.
T Consensus       613 ~Ydv~ir~~~~~~~~wen~~  632 (1758)
T KOG0994|consen  613 EYDVLIRYDPRTPKLWENAK  632 (1758)
T ss_pred             ccchheeccCCCcchhhhhe
Confidence            344455556554 2354443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=90.07  E-value=23  Score=35.85  Aligned_cols=184  Identities=10%  Similarity=0.003  Sum_probs=89.9

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.+++=..+.....                .....+....+++|++.....+    ...+|.+|+.++....+
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~l  279 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKG----------------SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRL  279 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEEC
Confidence            469999999886555432210                0111111122445655443322    34599999988776665


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      .   ..+ .........-++ .|++.....    ....+|.++..+.....+...+     ......... +++.|++..
T Consensus       280 t---~~~-~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        280 T---QSS-GIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             C---CCC-CCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEE
Confidence            4   111 111111222244 455432211    1346899998887777665322     111122222 344455443


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      ..++   ...++++|+.++....+.....     ...-...-+++.+++.....  ....++.++....
T Consensus       347 ~~~g---~~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~--g~~~l~~~~~~g~  405 (427)
T PRK02889        347 RVGG---AFKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG--GRSVLAAVSSDGR  405 (427)
T ss_pred             ccCC---cEEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC--CCEEEEEEECCCC
Confidence            3221   1369999999888777642111     11112222455555544322  2345777777443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=89.79  E-value=25  Score=35.69  Aligned_cols=146  Identities=10%  Similarity=0.010  Sum_probs=73.3

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..++++|+.++.=..+.   ..+... ......-+ ++|++....+.    ..++|.+|+.+.....+...   . ....
T Consensus       220 ~~I~~~dl~~g~~~~l~---~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~  287 (427)
T PRK02889        220 PVVYVHDLATGRRRVVA---NFKGSN-SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT  287 (427)
T ss_pred             cEEEEEECCCCCEEEee---cCCCCc-cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence            45999999988765554   222111 11122223 35655433222    35799999887776655321   1 1111


Q ss_pred             ceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccE-EEEECCEEEEEeCCCCCCCcceEEE
Q 010847          188 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       188 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~  265 (499)
                       ......|+ .|++.....+   ...+|.++..+...+.+...+     .+... ...-+++.+++.....  ....+++
T Consensus       288 -~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v  356 (427)
T PRK02889        288 -EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVG--GAFKLYV  356 (427)
T ss_pred             -CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccC--CcEEEEE
Confidence             12222344 4443322111   246899998887776663211     11111 1222344333333221  1236899


Q ss_pred             EECCCCceEEec
Q 010847          266 LNMTKLAWSILT  277 (499)
Q Consensus       266 ~d~~~~~W~~l~  277 (499)
                      +|+.+.....+.
T Consensus       357 ~d~~~g~~~~lt  368 (427)
T PRK02889        357 QDLATGQVTALT  368 (427)
T ss_pred             EECCCCCeEEcc
Confidence            999988877664

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.74  E-value=4.1  Score=43.00  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  431 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  431 (499)
                      .++++.+...|++...+...+...|+.+.+.....++++++++.+++.+
T Consensus        17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen   17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555555555566666666555555566666665555543

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=89.70  E-value=7.9  Score=33.93  Aligned_cols=12  Identities=8%  Similarity=-0.058  Sum_probs=5.7

Q ss_pred             EEECC---CCCCCCC
Q 010847          319 VMRLK---PRDIPRP  330 (499)
Q Consensus       319 ~~~~~---~~~W~~~  330 (499)
                      -||++   ...|...
T Consensus        39 ~Ydl~~~~~s~~~~~   53 (195)
T PF12761_consen   39 DYDLNSSPQSRWKPS   53 (195)
T ss_pred             CccccchhhcccccC
Confidence            45655   3455433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=89.69  E-value=2.7  Score=46.12  Aligned_cols=9  Identities=22%  Similarity=0.357  Sum_probs=3.2

Q ss_pred             cchHHHHHH
Q 010847          417 THSELSKEL  425 (499)
Q Consensus       417 ~~~~~~~~~  425 (499)
                      ++.++++.+
T Consensus      1620 ~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1620 QLGELETRM 1628 (1758)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PRK13684 Ycf48-like protein; Provisional

Probab=89.64  E-value=21  Score=34.78  Aligned_cols=163  Identities=9%  Similarity=0.024  Sum_probs=78.5

Q ss_pred             EEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEE-ECCCCcEEEee
Q 010847           47 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFI-DLETNLCGVME  125 (499)
Q Consensus        47 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~  125 (499)
                      ++.=+=.-.+|..+....                 .-..+.+....+..|+..|..+.      ++.- |....+|..+.
T Consensus       154 i~~S~DgG~tW~~~~~~~-----------------~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~  210 (334)
T PRK13684        154 IYRTTDGGKNWEALVEDA-----------------AGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQ  210 (334)
T ss_pred             EEEECCCCCCceeCcCCC-----------------cceEEEEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEee
Confidence            333333446899876431                 22334444444444544443221      4432 34445799885


Q ss_pred             cCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEE-C-CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847          126 TSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLD-L-ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  202 (499)
Q Consensus       126 ~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd-~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  202 (499)
                          .+..+.-++++. -++.++++|..+        ...+. . .-.+|+.+.. +........++++...++.++++|
T Consensus       211 ----~~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G  277 (334)
T PRK13684        211 ----RNSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGG  277 (334)
T ss_pred             ----CCCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEc
Confidence                233344444444 356788886532        12231 2 2347987642 100011222334444455688887


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeC
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGG  253 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG  253 (499)
                      ..+      .++.-.-...+|+.+......|  ...+.++.. +++.|++|.
T Consensus       278 ~~G------~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        278 GNG------TLLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             CCC------eEEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECC
Confidence            642      2333333446899864212222  234444544 567777765

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=89.61  E-value=2.8  Score=40.17  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHH
Q 010847          424 ELSSVQGQLVAERSRCFKLEAQI  446 (499)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~  446 (499)
                      ++.=+-+.||+++-|+++||.++
T Consensus       293 dy~fi~etLQEERyR~erLEEqL  315 (455)
T KOG3850|consen  293 DYKFIAETLQEERYRYERLEEQL  315 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555

>PTZ00420 coronin; Provisional

Probab=89.58  E-value=30  Score=36.40  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ..+++.||.+      ..+.++|+.++.=...-   ..+.  .-.++.. .++.+++.++.+      ..+.+||+.+..
T Consensus       138 ~~iLaSgS~D------gtIrIWDl~tg~~~~~i---~~~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~  200 (568)
T PTZ00420        138 YYIMCSSGFD------SFVNIWDIENEKRAFQI---NMPK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQE  200 (568)
T ss_pred             CeEEEEEeCC------CeEEEEECCCCcEEEEE---ecCC--cEEEEEECCCCCEEEEEecC------CEEEEEECCCCc
Confidence            4566666653      23888898877521111   1111  1122222 256777766643      358999998764

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.52  E-value=4.2  Score=42.75  Aligned_cols=9  Identities=22%  Similarity=0.346  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010847          459 IENEVQILR  467 (499)
Q Consensus       459 ~~~e~~~~~  467 (499)
                      |.++.+.+.
T Consensus       424 L~~e~r~lk  432 (594)
T PF05667_consen  424 LIEEYRRLK  432 (594)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.49  E-value=6.9  Score=38.87  Aligned_cols=110  Identities=15%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             EECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           90 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        90 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ..+|+|+..|+..+.      +.+||..+..  .+........|....-.+..++.++++|+-+.      .+-.+|+++
T Consensus        77 R~DG~LlaaGD~sG~------V~vfD~k~r~--iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~------v~k~~d~s~  142 (487)
T KOG0310|consen   77 RSDGRLLAAGDESGH------VKVFDMKSRV--ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK------VVKYWDLST  142 (487)
T ss_pred             ecCCeEEEccCCcCc------EEEeccccHH--HHHHHhhccCceeEEEecccCCeEEEecCCCc------eEEEEEcCC
Confidence            447999999986554      8899955521  11100011112222223346788999887442      234445555


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .. ......|.- ......++.. .+++|++-|||++.     |-.||+.+.
T Consensus       143 a~-v~~~l~~ht-DYVR~g~~~~-~~~hivvtGsYDg~-----vrl~DtR~~  186 (487)
T KOG0310|consen  143 AY-VQAELSGHT-DYVRCGDISP-ANDHIVVTGSYDGK-----VRLWDTRSL  186 (487)
T ss_pred             cE-EEEEecCCc-ceeEeecccc-CCCeEEEecCCCce-----EEEEEeccC
Confidence            44 232322211 1111112222 25679999999854     667777665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.49  E-value=30  Score=36.21  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             CcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--
Q 010847           45 SDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--  120 (499)
Q Consensus        45 ~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--  120 (499)
                      +.++.+|..|++  |+.-......      ..  ............+..+++||+...       ...++.+|..|++  
T Consensus        79 g~v~AlDa~TGk~lW~~~~~~~~~------~~--~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        79 SRVYALDAKTGKELWKYDPKLPDD------VI--PVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVV  143 (527)
T ss_pred             CcEEEEECCCCceeeEecCCCCcc------cc--cccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEE
Confidence            368999999875  8765432110      00  000001112234666888886432       2349999998885  


Q ss_pred             EEEeecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEee
Q 010847          121 CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  176 (499)
Q Consensus       121 W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~  176 (499)
                      |+.-.  +..... ....+-++.++.||+-..... ......++.||..|++  |+.-.
T Consensus       144 W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       144 WSKKN--GDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             eeccc--ccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence            66432  122211 112234556787776432211 1124569999998874  76443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.45  E-value=5.7  Score=27.90  Aligned_cols=11  Identities=18%  Similarity=0.075  Sum_probs=4.2

Q ss_pred             HHHHHHHhHHH
Q 010847          462 EVQILRQQKSA  472 (499)
Q Consensus       462 e~~~~~~~~~~  472 (499)
                      +..-.+.++.+
T Consensus        61 e~~~WQerlrs   71 (79)
T COG3074          61 EQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHHHH
Confidence            33333433333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.36  E-value=11  Score=35.67  Aligned_cols=10  Identities=40%  Similarity=0.627  Sum_probs=4.2

Q ss_pred             HHHHHHHhHH
Q 010847          462 EVQILRQQKS  471 (499)
Q Consensus       462 e~~~~~~~~~  471 (499)
                      +++++..++.
T Consensus       157 ~le~Lr~EKV  166 (310)
T PF09755_consen  157 ELERLRREKV  166 (310)
T ss_pred             HHHHHHHHHH
Confidence            3344444444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.35  E-value=5.8  Score=42.48  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=11.0

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      ++..+.+......+.-++..++.++++..
T Consensus       429 lkek~t~l~~~h~~lL~K~~di~kQle~~  457 (980)
T KOG0980|consen  429 LKEKYTELRQEHADLLRKYDDIQKQLESA  457 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333344444433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=89.34  E-value=39  Score=37.41  Aligned_cols=101  Identities=12%  Similarity=0.153  Sum_probs=52.0

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      +.+++.|+.+      ..+.+||..++.-...-   ... ...-.+++..  ++.+++.||.+.      .+.+||+.+.
T Consensus       545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~  608 (793)
T PLN00181        545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KEH-EKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG  608 (793)
T ss_pred             CCEEEEEeCC------CeEEEEECCCCeEEEEe---cCC-CCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence            4455566543      34888898876532221   111 1111222222  456777777543      4888888765


Q ss_pred             ee-EEeeecCCCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          171 TW-DAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       171 ~W-~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .- ..+..       .....++.+  .++.++++|+.+     +.|.+||+.+.
T Consensus       609 ~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~  650 (793)
T PLN00181        609 VSIGTIKT-------KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP  650 (793)
T ss_pred             cEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            32 22211       111222333  245577777654     46899998654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.33  E-value=22  Score=34.42  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCC---C
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKS---S  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~---~  106 (499)
                      ++||.=..... .++.+++||..+++-.-.-+.                  +-.++.+..- +..+|+..-+....   .
T Consensus         4 rvyV~D~~~~~-~~~rv~viD~d~~k~lGmi~~------------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~   64 (342)
T PF06433_consen    4 RVYVQDPVFFH-MTSRVYVIDADSGKLLGMIDT------------------GFLGNVALSPDGKTIYVAETFYSRGTRGE   64 (342)
T ss_dssp             EEEEEE-GGGG-SSEEEEEEETTTTEEEEEEEE------------------ESSEEEEE-TTSSEEEEEEEEEEETTEEE
T ss_pred             EEEEECCcccc-ccceEEEEECCCCcEEEEeec------------------ccCCceeECCCCCEEEEEEEEEecccccc
Confidence            45555432111 235789999988875433322                  3333433322 45677655432221   1


Q ss_pred             CCceEEEEECCCCc--EEEeecCC-CC-CCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEE
Q 010847          107 DSMIVRFIDLETNL--CGVMETSG-KV-PVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDA  174 (499)
Q Consensus       107 ~~~~~~~yd~~t~~--W~~~~~~g-~~-p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~  174 (499)
                      .++.+..||+.|..  ++..-+.+ .+ -.+..+......+ ..+|++- .    ....+|.+.|+...+...
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~----TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-F----TPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-E----SSSEEEEEEETTTTEEEE
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-c----CCCCeEEEEECCCCceee
Confidence            35679999999985  43332211 01 0111122222223 3566652 1    245678889998877643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.33  E-value=3.3  Score=44.62  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=24.1

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  446 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (499)
                      .+..+++++.+.++...+.+.++++++.+..+.+.+|++++-+.+
T Consensus       579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l  623 (717)
T PF10168_consen  579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL  623 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=89.26  E-value=3.6  Score=42.00  Aligned_cols=38  Identities=11%  Similarity=0.170  Sum_probs=17.6

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847          434 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  471 (499)
Q Consensus       434 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~  471 (499)
                      ..+.++..++.++.++++++..+...+.+...++++.+
T Consensus       315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~  352 (444)
T TIGR03017       315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVE  352 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555444444444444444333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.21  E-value=6.6  Score=28.61  Aligned_cols=18  Identities=6%  Similarity=0.071  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQ  475 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~  475 (499)
                      ++..+....+.++..+.-
T Consensus        57 qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422         57 HLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444445555555544433

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=89.20  E-value=6.1  Score=39.03  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=8.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHH
Q 010847          426 SSVQGQLVAERSRCFKLEAQI  446 (499)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~  446 (499)
                      +-+.+.+++++.|.+.||.++
T Consensus       247 ~~~~~~LqEEr~R~erLEeql  267 (395)
T PF10267_consen  247 QFILEALQEERYRYERLEEQL  267 (395)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            333344444444444444433

Its function is unknown.

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.19  E-value=5.2  Score=42.23  Aligned_cols=10  Identities=30%  Similarity=0.424  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 010847          383 IDAIKEDKRV  392 (499)
Q Consensus       383 ~~~l~~~~~~  392 (499)
                      +..++.....
T Consensus       301 ~~~l~d~i~~  310 (562)
T PHA02562        301 ITKIKDKLKE  310 (562)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=89.04  E-value=4  Score=45.80  Aligned_cols=10  Identities=10%  Similarity=0.242  Sum_probs=3.7

Q ss_pred             EEEEcccCCC
Q 010847           95 LLILGGHYKK  104 (499)
Q Consensus        95 iyv~GG~~~~  104 (499)
                      +.++-|.++.
T Consensus        25 ~~~i~G~Ng~   34 (880)
T PRK02224         25 VTVIHGVNGS   34 (880)
T ss_pred             eEEEECCCCC
Confidence            3333333333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=89.04  E-value=23  Score=34.30  Aligned_cols=146  Identities=10%  Similarity=0.045  Sum_probs=67.3

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCC-CcEEEeecCCCCCCCCcceEEEE-EC-CEEEEEcCcCCCCCccCcEEEEECC-C
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLET-NLCGVMETSGKVPVARGGHSVTL-VG-SRLIIFGGEDRSRKLLNDVHFLDLE-T  169 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~v~~yd~~-t  169 (499)
                      .+|+..+..      ..+..||+.+ +.++.+..   .+..-..+.++. -+ +.||+.+. .     .+.+..|++. +
T Consensus         3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~   67 (330)
T PRK11028          3 IVYIASPES------QQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADD   67 (330)
T ss_pred             EEEEEcCCC------CCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCC
Confidence            466664432      3378888754 56666552   222111122222 23 45666433 2     2467778775 4


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc-e-EecccCCCCCCcCcccEEEEE-C
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE-W-SQPEIKGDLVTGRAGHAGITI-D  245 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W-~~~~~~~~~p~~r~~~~~~~~-~  245 (499)
                      +++..+...   +.+-.-+.++.. +++.+|+.. +.    .+.+.+|++.++. . ..+   ...+....-|.++.. +
T Consensus        68 g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~g~~~~~~---~~~~~~~~~~~~~~~p~  136 (330)
T PRK11028         68 GALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKDGIPVAPI---QIIEGLEGCHSANIDPD  136 (330)
T ss_pred             CceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCCCCCCCce---eeccCCCcccEeEeCCC
Confidence            566555421   111111222222 244555543 22    2568888876432 1 111   111111223444443 2


Q ss_pred             -CEEEEEeCCCCCCCcceEEEEECCC
Q 010847          246 -ENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       246 -~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                       +.+|+..-     ..+.+.+||+.+
T Consensus       137 g~~l~v~~~-----~~~~v~v~d~~~  157 (330)
T PRK11028        137 NRTLWVPCL-----KEDRIRLFTLSD  157 (330)
T ss_pred             CCEEEEeeC-----CCCEEEEEEECC
Confidence             35555432     234688898866

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=88.92  E-value=5.4  Score=46.08  Aligned_cols=6  Identities=17%  Similarity=0.545  Sum_probs=2.7

Q ss_pred             EEEEcC
Q 010847          294 SAIIEG  299 (499)
Q Consensus       294 ~~~~~~  299 (499)
                      +++++|
T Consensus       638 iVTl~G  643 (1163)
T COG1196         638 IVTLDG  643 (1163)
T ss_pred             EEecCC
Confidence            344444

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=88.86  E-value=5.8  Score=36.86  Aligned_cols=40  Identities=13%  Similarity=0.270  Sum_probs=16.7

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  442 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (499)
                      +..+++..+.........++.+++..+.+++..++|++.|
T Consensus       177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL  216 (267)
T PF10234_consen  177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL  216 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444443334444444444444444444433

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=88.86  E-value=15  Score=32.01  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  451 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  451 (499)
                      .|..+..-+++.+...+.......+++.+......+.++.+..+....++..++...++.++.|-+.
T Consensus         8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~   74 (205)
T KOG1003|consen    8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKH   74 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3333333334444434444455566666666666666666666666777777777766666655433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=88.78  E-value=12  Score=34.09  Aligned_cols=42  Identities=12%  Similarity=0.284  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      +..++.........+.+......+++.++.+.....+++++.
T Consensus        33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842          33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344455555555555555555444

>PF14282 FlxA: FlxA-like protein

Probab=88.70  E-value=1.4  Score=34.75  Aligned_cols=15  Identities=7%  Similarity=0.350  Sum_probs=5.7

Q ss_pred             hhhhhHHHHHHhhcc
Q 010847          403 ENSRFREKIDEVNST  417 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~  417 (499)
                      .+..|+..+..++.+
T Consensus        20 ~I~~L~~Qi~~Lq~q   34 (106)
T PF14282_consen   20 QIEQLQKQIKQLQEQ   34 (106)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333443333333333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=88.53  E-value=4.1  Score=44.17  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  426 (499)
                      +..+++..+-++..+.+......+++.+++.++.++..+..+.+
T Consensus       179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~  222 (1195)
T KOG4643|consen  179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIE  222 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334443444444444444445555555555555554444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.50  E-value=6  Score=41.75  Aligned_cols=9  Identities=0%  Similarity=0.254  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010847          383 IDAIKEDKR  391 (499)
Q Consensus       383 ~~~l~~~~~  391 (499)
                      +..++.+..
T Consensus       308 i~~l~~~l~  316 (562)
T PHA02562        308 LKELQHSLE  316 (562)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=88.47  E-value=2.5  Score=43.25  Aligned_cols=74  Identities=23%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM-LESSQTIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      .++++......+..+...+.+++..+..+.+++++|+-++.+.++. .+.+...+.++.++.++-+++..|++++
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL  368 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555555555555555555555555555555555333332 2222344455555555555555554433

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=88.36  E-value=13  Score=32.25  Aligned_cols=16  Identities=6%  Similarity=0.229  Sum_probs=6.1

Q ss_pred             cccccchhhHHHHHHH
Q 010847          374 LSEKDVRTDIDAIKED  389 (499)
Q Consensus       374 ~~~~~~~~~~~~l~~~  389 (499)
                      |+.+.+..++...+.+
T Consensus        16 ~skeel~~rLR~~E~e   31 (195)
T PF10226_consen   16 WSKEELVRRLRRAEAE   31 (195)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            3444443333333333

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=88.33  E-value=2.9  Score=36.90  Aligned_cols=13  Identities=46%  Similarity=0.687  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 010847          442 LEAQIAELQKMLE  454 (499)
Q Consensus       442 ~~~~~~e~~~~l~  454 (499)
                      ++.++.+++.+++
T Consensus       115 l~~~~~~l~~el~  127 (188)
T PF03962_consen  115 LKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=88.17  E-value=2.9  Score=37.26  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=11.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          433 VAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       433 ~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ....++..+++.++++.+.+|+..+
T Consensus       154 ~~~~~~~~kL~~el~~~~~~Le~~~  178 (216)
T KOG1962|consen  154 DKLKADLEKLETELEKKQKKLEKAQ  178 (216)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.09  E-value=9.8  Score=38.49  Aligned_cols=55  Identities=9%  Similarity=-0.005  Sum_probs=27.6

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      .....|+.++++...++++.+++.+.+++.-+.+.+|.++.......+.+.++.+
T Consensus       588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L  642 (741)
T KOG4460|consen  588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL  642 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555444444444444443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=88.03  E-value=17  Score=31.67  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ..++..+.|-.+..+++...++.+--+.+..++..+++.+.
T Consensus        82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~  122 (205)
T KOG1003|consen   82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD  122 (205)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33344444445555555555555555555555555544443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.03  E-value=4.2  Score=47.59  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      ++....++.+.+.+++..+.++..++++...++.++++++.++..+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444444444444444444444444444444444444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=87.98  E-value=7.1  Score=28.30  Aligned_cols=16  Identities=6%  Similarity=0.094  Sum_probs=6.6

Q ss_pred             HHHHHHHHhHHHHHHH
Q 010847          461 NEVQILRQQKSAFEQE  476 (499)
Q Consensus       461 ~e~~~~~~~~~~~~~~  476 (499)
                      .+....+.++..+...
T Consensus        53 ~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   53 QERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3344444444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=87.95  E-value=18  Score=31.81  Aligned_cols=27  Identities=11%  Similarity=0.175  Sum_probs=12.3

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSV  428 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~  428 (499)
                      .-.++|+.++.+.+..+++...+|+..
T Consensus        67 ~iveqLe~ev~EAe~vV~ee~~sL~~a   93 (188)
T PF05335_consen   67 QIVEQLEQEVREAEAVVQEEKASLQQA   93 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=87.93  E-value=9.3  Score=36.15  Aligned_cols=54  Identities=26%  Similarity=0.412  Sum_probs=25.3

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ...|..++....++.....+++.++..++-.++.++..+-.+..++++.|....
T Consensus       215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk  268 (306)
T PF04849_consen  215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK  268 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444444444444444444444445555444444444444444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=87.88  E-value=31  Score=36.04  Aligned_cols=126  Identities=16%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             CCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCC-CCCCccceEEEEcCcEEEEEcCC
Q 010847          129 KVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGC  204 (499)
Q Consensus       129 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~  204 (499)
                      .+|..+-..+...+   ++++++.-      ...-+++.++..+.+..++.....- ..+-..+-++.-.+++|.++++.
T Consensus       423 ~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~  496 (691)
T KOG2048|consen  423 DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR  496 (691)
T ss_pred             cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence            67777766555443   56777765      1244678888888777766542111 11222223333347788888754


Q ss_pred             CCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEE---EECCEEEEEeCCCCCCCcceEEEEECCC---CceEEe
Q 010847          205 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI---TIDENWYIVGGGDNNNGCQETIVLNMTK---LAWSIL  276 (499)
Q Consensus       205 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~---~~~~~l~v~GG~~~~~~~~~~~~~d~~~---~~W~~l  276 (499)
                            ..|++||+++.+-..+..  .++  ++.-+++   ...++++|.-      ..+.++.||+..   ..|.+.
T Consensus       497 ------g~I~v~nl~~~~~~~l~~--rln--~~vTa~~~~~~~~~~lvvat------s~nQv~efdi~~~~l~~ws~~  558 (691)
T KOG2048|consen  497 ------GQIFVYNLETLESHLLKV--RLN--IDVTAAAFSPFVRNRLVVAT------SNNQVFEFDIEARNLTRWSKN  558 (691)
T ss_pred             ------ceEEEEEcccceeecchh--ccC--cceeeeeccccccCcEEEEe------cCCeEEEEecchhhhhhhhhc
Confidence                  379999999988776531  122  2222222   2245666652      234688999844   346544

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=87.85  E-value=4.3  Score=39.77  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=16.4

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHHHHHHH
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSVQGQLV  433 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (499)
                      .++..|+.++...+.++++..++.++.-+++.
T Consensus        15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~   46 (344)
T PF12777_consen   15 EQVEEMQEELEEKQPELEEKQKEAEELLEEIE   46 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555444444433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.84  E-value=4  Score=38.51  Aligned_cols=8  Identities=13%  Similarity=0.563  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 010847          386 IKEDKRVL  393 (499)
Q Consensus       386 l~~~~~~~  393 (499)
                      |+.++..+
T Consensus       144 LEKEReqL  151 (561)
T KOG1103|consen  144 LEKEREQL  151 (561)
T ss_pred             HHHHHHHH
Confidence            33333333

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=87.75  E-value=13  Score=29.84  Aligned_cols=12  Identities=17%  Similarity=0.468  Sum_probs=4.7

Q ss_pred             HHHhHHHHHHHH
Q 010847          466 LRQQKSAFEQEM  477 (499)
Q Consensus       466 ~~~~~~~~~~~~  477 (499)
                      ++.+++.+..++
T Consensus        96 l~e~l~eLq~~i  107 (119)
T COG1382          96 LQERLEELQSEI  107 (119)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>cd00094 HX Hemopexin-like repeats

Probab=87.73  E-value=19  Score=31.89  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=72.2

Q ss_pred             EEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeec-CCCCCCCccceEEEEc-CcEEEEEcCCCCCCCCCcEE
Q 010847          139 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT-QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLH  214 (499)
Q Consensus       139 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~  214 (499)
                      ++...+.+|+|-|.        .+|.++.....  -..+... +.+|.+.  -++.... ++.+|+|-|       +..|
T Consensus        12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~I--DAa~~~~~~~~~yfFkg-------~~yw   74 (194)
T cd00094          12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSPV--DAAFERPDTGKIYFFKG-------DKYW   74 (194)
T ss_pred             EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCCc--cEEEEECCCCEEEEECC-------CEEE
Confidence            44456899999663        36666654111  1111110 1123222  2233333 367999977       3688


Q ss_pred             EEECCCCceEecccCC--CCCC--cCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCC---CC
Q 010847          215 VLDLQTNEWSQPEIKG--DLVT--GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP---LA  286 (499)
Q Consensus       215 ~~d~~~~~W~~~~~~~--~~p~--~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p---~~  286 (499)
                      +|+..+..+.-+....  ..|.  ..-..+.... ++++|+|-|       +..|+||........  ..|....   ..
T Consensus        75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~--~yP~~i~~~w~g  145 (194)
T cd00094          75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDP--GYPKLIETDFPG  145 (194)
T ss_pred             EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccC--CCCcchhhcCCC
Confidence            8886642222211111  1121  1112222222 578999987       357899876554321  1111000   00


Q ss_pred             CC-CCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          287 SE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       287 ~~-~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      .. ...+ +.... +..+|.|-|.      ..|+||.....
T Consensus       146 ~p~~ida-a~~~~-~~~~yfF~g~------~y~~~d~~~~~  178 (194)
T cd00094         146 VPDKVDA-AFRWL-DGYYYFFKGD------QYWRFDPRSKE  178 (194)
T ss_pred             cCCCcce-eEEeC-CCcEEEEECC------EEEEEeCccce
Confidence            11 1122 22222 2457777664      78899987654

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.73  E-value=6.1  Score=43.94  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI  459 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  459 (499)
                      +.+..+.+.+++++.++++++++++++++..+++.
T Consensus       496 ~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~  530 (1317)
T KOG0612|consen  496 QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK  530 (1317)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555666666666666666666666533

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.65  E-value=4.4  Score=38.37  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             HHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          400 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       400 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      ...+++.|++..++++...++.+.+++.++++++.+++.++-|...++|-..+
T Consensus       230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~  282 (365)
T KOG2391|consen  230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK  282 (365)
T ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            33455556666666666666666667777777777776666666666663333

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=87.63  E-value=14  Score=35.60  Aligned_cols=17  Identities=6%  Similarity=0.235  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHhHHHHHH
Q 010847          459 IENEVQILRQQKSAFEQ  475 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~  475 (499)
                      |.+|+++..++++++..
T Consensus       361 L~keLeekkreleql~~  377 (442)
T PF06637_consen  361 LAKELEEKKRELEQLKM  377 (442)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444333333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=87.52  E-value=4.1  Score=44.45  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847          443 EAQIAELQKMLESSQTIENEVQILRQQKS  471 (499)
Q Consensus       443 ~~~~~e~~~~l~~~~~~~~e~~~~~~~~~  471 (499)
                      ++++.+++.++..+.+.+++..+++++.+
T Consensus       352 ~~~~~~l~~~~~~~p~~e~~~~~L~R~~~  380 (726)
T PRK09841        352 EQERKRLNKRVSAMPSTQQEVLRLSRDVE  380 (726)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33333333333333344455555544444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.51  E-value=7.4  Score=42.25  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .+.++...+..++..+++++.
T Consensus       353 ~l~~ee~~~~~rl~~l~~~~~  373 (1200)
T KOG0964|consen  353 SLVDEEKRLKKRLAKLEQKQR  373 (1200)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            344444444555555554443

>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=1.9  Score=41.49  Aligned_cols=18  Identities=11%  Similarity=0.370  Sum_probs=8.2

Q ss_pred             HHHhHHHHHHHHHHhhcc
Q 010847          466 LRQQKSAFEQEMERATSV  483 (499)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~  483 (499)
                      ++++++++++++++....
T Consensus       331 i~~~l~ql~rql~~il~~  348 (497)
T KOG3838|consen  331 IHKQLAQLERQLDKILGP  348 (497)
T ss_pred             HHHHHHHHHHHHHHHhCc
Confidence            344444455555444333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=87.37  E-value=36  Score=34.55  Aligned_cols=140  Identities=12%  Similarity=0.042  Sum_probs=69.2

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.++.-..+.....                .-...+...-+..|++.....+    ..++|.+|+.++....+
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRG----------------HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQL  287 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCC----------------ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEee
Confidence            358899998887666543321                0011111122344554432222    23589999988887666


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      ..   .+.... .....-++ .|++.....+    ...+|.++..+..-..+..  .   .   +..... +++.|++.+
T Consensus       288 t~---~~~~~~-~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~---~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        288 TS---GAGNNT-EPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G---YSAQISADGKTLVMIN  351 (429)
T ss_pred             cc---CCCCcC-CEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C---CCccCCCCCCEEEEEc
Confidence            42   111111 11222244 4554432221    2467888876654333311  1   1   112222 344454443


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecc
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                      +       +.++.+|+.++.+..+.
T Consensus       352 ~-------~~i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        352 G-------DNVVKQDLTSGSTEVLS  369 (429)
T ss_pred             C-------CCEEEEECCCCCeEEec
Confidence            3       46888999998887653

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=87.33  E-value=18  Score=32.44  Aligned_cols=44  Identities=7%  Similarity=0.105  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  428 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  428 (499)
                      .|++++..+...+.+......+....+.+.+..+.+.+.+.+++
T Consensus        81 vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I  124 (204)
T PRK09174         81 IIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI  124 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555454444444444444555555555554444433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.31  E-value=32  Score=34.01  Aligned_cols=139  Identities=13%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cE
Q 010847           46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC  121 (499)
Q Consensus        46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W  121 (499)
                      .++.+|+.+++  |+......                ......-....+++||+-.. .+      .+++||..++  .|
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~~~~~G~i~~g~~-~g------~~y~ld~~~G~~~W  135 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLGA----------------VAQLSGPILGSDGKIYVGSW-DG------KLYALDASTGTLVW  135 (370)
T ss_pred             cEEEEeCCCCcEEecccCcCc----------------ceeccCceEEeCCeEEEecc-cc------eEEEEECCCCcEEE
Confidence            69999999987  87754420                01111112222677776433 22      4999999655  57


Q ss_pred             EEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEE
Q 010847          122 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLI  199 (499)
Q Consensus       122 ~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~  199 (499)
                      ......   . ++....++..++.+|+.-       ..+.++++|..+.  .|..-...+ .+ .+.....+ +.++.+|
T Consensus       136 ~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~-~~~~~~~~-~~~~~vy  201 (370)
T COG1520         136 SRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LS-LSIYGSPA-IASGTVY  201 (370)
T ss_pred             EEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cc-cccccCce-eecceEE
Confidence            766532   1 333333444455565542       1356889988765  587444321 11 22111222 4466344


Q ss_pred             EEcCCCCCCCCCcEEEEECCCCc--eEe
Q 010847          200 VFGGCSHSIFFNDLHVLDLQTNE--WSQ  225 (499)
Q Consensus       200 v~GG~~~~~~~~~i~~~d~~~~~--W~~  225 (499)
                       +|..+  . ...++.+|+.+++  |..
T Consensus       202 -~~~~~--~-~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         202 -VGSDG--Y-DGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             -EecCC--C-cceEEEEEccCCcEeeee
Confidence             44332  1 2369999997765  874

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.21  E-value=5  Score=36.70  Aligned_cols=18  Identities=17%  Similarity=0.259  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQ  475 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~  475 (499)
                      +|+.++.++.-+++...+
T Consensus       113 ~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen  113 KLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=87.20  E-value=19  Score=31.36  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhh
Q 010847          459 IENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      ...+.+.+++.+..+++..+.++
T Consensus       150 ~~~~~~~l~~~i~~l~rk~~~l~  172 (177)
T PF13870_consen  150 TKEEVEELRKEIKELERKVEILE  172 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.16  E-value=16  Score=30.21  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      .+..++.+++..+..+..++.........|...
T Consensus        60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~   92 (132)
T PF07926_consen   60 ELQQLREELQELQQEINELKAEAESAKAELEES   92 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555554444444333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=87.11  E-value=23  Score=32.19  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      +.+++.|+.      ...+..||+.+..-...-   . .....-.++.... +.+++.|+.      ...+.+||+.+.+
T Consensus       105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~  168 (289)
T cd00200         105 GRILSSSSR------DKTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK  168 (289)
T ss_pred             CCEEEEecC------CCeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence            456666652      234889998865433222   1 1111112223333 344444431      2358889987543


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI  250 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v  250 (499)
                      -...-.    .....-.++....++..+++++.+     +.+.+||+.+......-  .  .....-.++.... +.+++
T Consensus       169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence            221111    011112223333344345555542     46889998764433211  0  1111222333333 34555


Q ss_pred             EeCCCCCCCcceEEEEECCCCc
Q 010847          251 VGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      .++.+     ..+.+||+.+..
T Consensus       236 ~~~~~-----~~i~i~~~~~~~  252 (289)
T cd00200         236 SGSED-----GTIRVWDLRTGE  252 (289)
T ss_pred             EEcCC-----CcEEEEEcCCce
Confidence            44412     247888877543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.02  E-value=7.6  Score=41.10  Aligned_cols=15  Identities=13%  Similarity=0.118  Sum_probs=5.5

Q ss_pred             hhhHHHHHHhhccch
Q 010847          405 SRFREKIDEVNSTHS  419 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~  419 (499)
                      ..++..+.+.+...+
T Consensus       333 adirc~LlEarrk~e  347 (1265)
T KOG0976|consen  333 ADIRCALLEARRKAE  347 (1265)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            333333333333333

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=86.96  E-value=22  Score=31.91  Aligned_cols=48  Identities=8%  Similarity=0.224  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847          384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  431 (499)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  431 (499)
                      ..+.+++..++..+.+......+....+.+.+..+++.+.+.++...+
T Consensus        75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~  122 (205)
T PRK06231         75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ  122 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555566666666665555444433

>PRK11546 zraP zinc resistance protein; Provisional

Probab=86.90  E-value=5.8  Score=32.97  Aligned_cols=14  Identities=7%  Similarity=0.181  Sum_probs=5.5

Q ss_pred             hhHHHHHHHHHHHH
Q 010847          439 CFKLEAQIAELQKM  452 (499)
Q Consensus       439 ~~~~~~~~~e~~~~  452 (499)
                      +.++..++.+++.+
T Consensus        91 I~aL~kEI~~Lr~k  104 (143)
T PRK11546         91 INAVAKEMENLRQS  104 (143)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344333333333

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=86.89  E-value=21  Score=31.35  Aligned_cols=45  Identities=11%  Similarity=0.125  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  429 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  429 (499)
                      .+++++..+...+.+......+......+.+..+.+.+.+-+++.
T Consensus        59 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii  103 (181)
T PRK13454         59 VLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIV  103 (181)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555544444444455555555555555555544433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=86.88  E-value=14  Score=32.65  Aligned_cols=92  Identities=16%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE  462 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e  462 (499)
                      |.-|+...++.+..+...-.++-.|+..+.+....+...+..+...+..+   +.+..+++....|++++..+..-+.++
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~---~~K~~ELE~ce~ELqr~~~Ea~lLrek   88 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL---RTKQLELEVCENELQRKKNEAELLREK   88 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence            44455555554444444445666666666666666666555554444333   334445555555555555555444444


Q ss_pred             HHHHHHhHHHHHHHH
Q 010847          463 VQILRQQKSAFEQEM  477 (499)
Q Consensus       463 ~~~~~~~~~~~~~~~  477 (499)
                      +..+.+++..+..++
T Consensus        89 l~~le~El~~Lr~~l  103 (202)
T PF06818_consen   89 LGQLEAELAELREEL  103 (202)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            444444444443333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=86.86  E-value=7.1  Score=31.24  Aligned_cols=16  Identities=6%  Similarity=0.385  Sum_probs=6.3

Q ss_pred             HhhhhhHHHHHHhhcc
Q 010847          402 TENSRFREKIDEVNST  417 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~  417 (499)
                      .+..+++..+.+.+..
T Consensus        27 ~qk~~le~qL~E~~~a   42 (119)
T COG1382          27 LQKQQLEAQLKEIEKA   42 (119)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444443333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=86.85  E-value=11  Score=39.24  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAF  473 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~--------~~~~e~~~~~~~~~~~  473 (499)
                      +++.+.+=+++.++.+.|+..+        .+..|+.+++++++..
T Consensus       579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa  624 (961)
T KOG4673|consen  579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA  624 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444445554444333        3445556666666533

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.77  E-value=27  Score=32.54  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=39.1

Q ss_pred             cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEec
Q 010847          159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  226 (499)
                      ...++.||+.+.+|.+-..-+.  .+| ..++-+...+++.+.     ....+.|.+||+.+.+.+.+
T Consensus       253 ~g~l~rfdPs~~sW~eypLPgs--~ar-pys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~  312 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPLPGS--KAR-PYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVL  312 (353)
T ss_pred             CceeeEeCcccccceeeeCCCC--CCC-cceeeeccCCcEEee-----ccccCceeecCcccceEEEe
Confidence            4578999999999988864222  122 233333334444442     23357899999999999886

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=86.71  E-value=13  Score=30.91  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQEMER  479 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~  479 (499)
                      ++++++..++++++++.+.+++
T Consensus       112 ~l~~~l~~~~~~~~~~~~~l~~  133 (140)
T PRK03947        112 KLEEALQKLASRIAQLAQELQQ  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.70  E-value=23  Score=35.61  Aligned_cols=149  Identities=15%  Similarity=0.091  Sum_probs=83.6

Q ss_pred             cCcEEEEEcCCC-----ceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCC
Q 010847           44 LSDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET  118 (499)
Q Consensus        44 ~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  118 (499)
                      .+.++.+|...+     .|..+.+..                 .-..+.+...++.+|+.-.....   ...+..+++.+
T Consensus       251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-----------------~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~  310 (414)
T PF02897_consen  251 ESEVYLLDLDDGGSPDAKPKLLSPRE-----------------DGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLAD  310 (414)
T ss_dssp             EEEEEEEECCCTTTSS-SEEEEEESS-----------------SS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTS
T ss_pred             CCeEEEEeccccCCCcCCcEEEeCCC-----------------CceEEEEEccCCEEEEeeCCCCC---CcEEEEecccc
Confidence            368899999875     788876532                 23344455568999988763332   34588888887


Q ss_pred             Cc---EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE--
Q 010847          119 NL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--  193 (499)
Q Consensus       119 ~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--  193 (499)
                      ..   |..+-.  .......--.+...+++|++.-=.+    ....+.+||+. ..|.....  .+|  -.+......  
T Consensus       311 ~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~-~~~~~~~~--~~p--~~g~v~~~~~~  379 (414)
T PF02897_consen  311 PSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD-DGKESREI--PLP--EAGSVSGVSGD  379 (414)
T ss_dssp             TSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT--TEEEEEE--ESS--SSSEEEEEES-
T ss_pred             cccccceeEEc--CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC-CCcEEeee--cCC--cceEEeccCCC
Confidence            75   664321  2222223445556788888764332    25579999988 22333332  122  122111111  


Q ss_pred             --cCcEEEEEcCCCCCCCCCcEEEEECCCCceEec
Q 010847          194 --ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       194 --~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  226 (499)
                        .+...|.+.+..   ....+|.||+.+++.+.+
T Consensus       380 ~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  380 FDSDELRFSYSSFT---TPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEE
T ss_pred             CCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEE
Confidence              134445555543   234799999999987665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=86.69  E-value=11  Score=36.02  Aligned_cols=13  Identities=23%  Similarity=0.388  Sum_probs=4.4

Q ss_pred             HhhccchHHHHHH
Q 010847          413 EVNSTHSELSKEL  425 (499)
Q Consensus       413 ~~~~~~~~~~~~~  425 (499)
                      .....+.+.++++
T Consensus       194 q~d~~L~~~ek~~  206 (297)
T PF02841_consen  194 QADQQLTEKEKEI  206 (297)
T ss_dssp             HH-TTS-HHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444444433

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.59  E-value=6.1  Score=28.84  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=15.5

Q ss_pred             hccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          415 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      ..++..+..+-+.+..........+.+|..++.+.+.+
T Consensus        11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~   48 (74)
T PF12329_consen   11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ   48 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444433

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.54  E-value=13  Score=39.54  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ  445 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (499)
                      +++.+++...+++.++++.+.++++...+.+++++....++.+
T Consensus       672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q  714 (970)
T KOG0946|consen  672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ  714 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445555444444444444444444333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.51  E-value=15  Score=37.29  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             ccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH--------
Q 010847          375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI--------  446 (499)
Q Consensus       375 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  446 (499)
                      +++.++.+++.|.++..+......+...--..+-++-..++.+.++.+.++...+.++++.++..-+...+.        
T Consensus         9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~   88 (772)
T KOG0999|consen    9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGE   88 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch


Q ss_pred             -----------HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847          447 -----------AELQKMLESSQTIENEVQILRQQKSAFEQEMERATS  482 (499)
Q Consensus       447 -----------~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  482 (499)
                                 ...+--++++-+++.++.|+++.+.....|.+++.+
T Consensus        89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~  135 (772)
T KOG0999|consen   89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEK  135 (772)
T ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=86.49  E-value=8.4  Score=33.78  Aligned_cols=14  Identities=14%  Similarity=0.432  Sum_probs=5.2

Q ss_pred             CcccccchhhHHHH
Q 010847          373 DLSEKDVRTDIDAI  386 (499)
Q Consensus       373 ~~~~~~~~~~~~~l  386 (499)
                      +|+.-.++.++..|
T Consensus        95 dwEevrLkrELa~L  108 (195)
T PF12761_consen   95 DWEEVRLKRELAEL  108 (195)
T ss_pred             chHHHHHHHHHHHH
Confidence            34433333333333

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=86.45  E-value=16  Score=29.70  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=11.3

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847          454 ESSQTIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       454 ~~~~~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .++.++..++..++.+...++..++
T Consensus        81 ~ei~~l~~~l~~l~~~~~k~e~~l~  105 (126)
T PF13863_consen   81 AEIKKLKAELEELKSEISKLEEKLE  105 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.45  E-value=19  Score=32.78  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847          379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  426 (499)
                      +...+..+++........+........+++.++++.+....++++..+
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~   75 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE   75 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333355556655555556666666667777777777777777766543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.44  E-value=13  Score=37.31  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=18.8

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  454 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  454 (499)
                      +...+.+.....+++++...++..++|..-+|..++..++++++
T Consensus       207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k  250 (596)
T KOG4360|consen  207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK  250 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            33333333333444444444444444444444444444444433

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=86.44  E-value=8.1  Score=29.93  Aligned_cols=6  Identities=17%  Similarity=0.628  Sum_probs=2.2

Q ss_pred             hhhHHH
Q 010847          405 SRFREK  410 (499)
Q Consensus       405 ~~l~~~  410 (499)
                      ..|+..
T Consensus        29 ~~L~e~   34 (102)
T PF10205_consen   29 AELKEQ   34 (102)
T ss_pred             HHHHHH
Confidence            333333

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=86.39  E-value=17  Score=29.98  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=8.9

Q ss_pred             HHhhccchHHHHHHHHHHHHHH
Q 010847          412 DEVNSTHSELSKELSSVQGQLV  433 (499)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~  433 (499)
                      +..-...++..++|.+++++++
T Consensus        55 q~~LgrveEetkrLa~ireeLE   76 (159)
T PF04949_consen   55 QAQLGRVEEETKRLAEIREELE   76 (159)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444333

This entry represents proteins annotated as RAB6-interacting golgins.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=86.37  E-value=22  Score=31.36  Aligned_cols=18  Identities=17%  Similarity=0.564  Sum_probs=7.5

Q ss_pred             HHHHHHHHHhHHHHHHHH
Q 010847          460 ENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       460 ~~e~~~~~~~~~~~~~~~  477 (499)
                      +.|++.+.++-+++..++
T Consensus       169 ~~ei~~lk~~~~ql~~~l  186 (189)
T PF10211_consen  169 QEEIDFLKKQNQQLKAQL  186 (189)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444444

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=86.35  E-value=13  Score=40.31  Aligned_cols=42  Identities=19%  Similarity=0.424  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      .+.++..+..++..+.....+.+.++.++++.+..+.+++.+
T Consensus       598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e  639 (769)
T PF05911_consen  598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE  639 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433334444444444444333333333

The function of this family is unknown.

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=85.85  E-value=26  Score=31.45  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010847          440 FKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       440 ~~~~~~~~e~~~~l~~~~-----~~~~e~~~~~~~~~~~~~~~  477 (499)
                      ...+.+++.+++++..++     ++.+-..++.+++..+++++
T Consensus        81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~  123 (206)
T PF14988_consen   81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA  123 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666655544     33444445556666665555

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=85.77  E-value=8.9  Score=40.54  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      +..+++.|..++..+...+...-.+...|.....+.+..+.++++.++..+.
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e  136 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE  136 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666766666666555444344455555555555555555555554443

>PRK10780 periplasmic chaperone; Provisional

Probab=85.71  E-value=16  Score=31.57  Aligned_cols=22  Identities=9%  Similarity=0.249  Sum_probs=8.9

Q ss_pred             hhHHHHHHhhccchHHHHHHHH
Q 010847          406 RFREKIDEVNSTHSELSKELSS  427 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~  427 (499)
                      +|+.+....+.+++....+++.
T Consensus        47 ~le~~~~~~q~el~~~~~elq~   68 (165)
T PRK10780         47 QLENEFKGRASELQRMETDLQA   68 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444333

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=85.55  E-value=14  Score=39.21  Aligned_cols=83  Identities=16%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             HHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010847          389 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ  468 (499)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~  468 (499)
                      ++++++..+.+.+.++.+++.+|+..+.++...+.++++..++....+.+..-|+..-+.-+++-+...+..++++.+.+
T Consensus        80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~  159 (632)
T PF14817_consen   80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE  159 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666777777777777777777777766666666666666666555555555555554444444444444444


Q ss_pred             hHH
Q 010847          469 QKS  471 (499)
Q Consensus       469 ~~~  471 (499)
                      +++
T Consensus       160 ~~q  162 (632)
T PF14817_consen  160 QLQ  162 (632)
T ss_pred             HHH
Confidence            443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.45  E-value=9.6  Score=41.60  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT  458 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  458 (499)
                      .+..-+..++...++.+.+..+++++.+..+..++....+++..+...++++..++.
T Consensus       643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~  699 (1072)
T KOG0979|consen  643 AEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN  699 (1072)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555555545555555444444444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=85.18  E-value=22  Score=33.49  Aligned_cols=30  Identities=27%  Similarity=0.502  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKID  412 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  412 (499)
                      +.++++.+.++...+.+.......+.....
T Consensus        71 v~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          71 VQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444444444444

>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli

Probab=85.07  E-value=14  Score=29.61  Aligned_cols=43  Identities=12%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhHHHHHHHHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQTI--ENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~~~--~~e~~~~~~~~~~~~~~~~  478 (499)
                      +.++.+.+.++.|.+.+|++.+.-  .+++...++.+.....+|+
T Consensus        69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~  113 (115)
T PF06476_consen   69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELK  113 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            445566666666666666666521  1444444444444444443

>PF14182 YgaB: YgaB-like protein

Probab=85.03  E-value=6.7  Score=28.54  Aligned_cols=44  Identities=20%  Similarity=0.467  Sum_probs=21.5

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010847          432 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE  476 (499)
Q Consensus       432 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~  476 (499)
                      ++.+-+||++.+.++.+++++ ..+..++.|+.+..++++.+.+-
T Consensus        19 LQsElERCqeIE~eL~~l~~e-a~l~~i~~EI~~mkk~Lk~Iq~~   62 (79)
T PF14182_consen   19 LQSELERCQEIEKELKELERE-AELHSIQEEISQMKKELKEIQRV   62 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666666666555554 23334444444444444443333

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=84.99  E-value=19  Score=29.09  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      +..+|-.++.-+....+.+-+.+.--.-|+++++.++.+..-+++-+...+..+..+
T Consensus        11 LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iL   67 (134)
T PF15233_consen   11 LINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRIL   67 (134)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            334444454444444444444555555666666666655554444333333333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.96  E-value=6.1  Score=34.26  Aligned_cols=55  Identities=29%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQ--LVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +..+|+.++.+++.+...++.++..+...  .+++...+.+++.++.+++.+|..++
T Consensus        80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444332  23334444444444444444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.96  E-value=20  Score=35.51  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=14.1

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847          454 ESSQTIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       454 ~~~~~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      +.+.++..+-.++|+|+..+...++
T Consensus       403 ~DI~Kil~etreLqkq~ns~se~L~  427 (521)
T KOG1937|consen  403 QDIVKILEETRELQKQENSESEALN  427 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334555566666666666555553

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.94  E-value=20  Score=36.05  Aligned_cols=19  Identities=11%  Similarity=0.249  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHhhhhhhH
Q 010847          423 KELSSVQGQLVAERSRCFK  441 (499)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~  441 (499)
                      -+|++.++.+..+.+|+.+
T Consensus       376 ~KI~~~k~r~~~Ls~RiLR  394 (508)
T KOG3091|consen  376 AKIEEAKNRHVELSHRILR  394 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=84.89  E-value=5.4  Score=41.63  Aligned_cols=19  Identities=11%  Similarity=0.352  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 010847          458 TIENEVQILRQQKSAFEQE  476 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~  476 (499)
                      +++.+.++++++..++++.
T Consensus       241 ~l~~~~~~~~~~~~~lk~a  259 (555)
T TIGR03545       241 DLQNDKKQLKADLAELKKA  259 (555)
T ss_pred             HHHHhHHHHHHHHHHHHhc
Confidence            3444444444444444443

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=84.87  E-value=8.2  Score=35.97  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010847          458 TIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      ..+++.+++..++..|++||-++
T Consensus        63 dYqrq~~elneEkrtLeRELARa   85 (351)
T PF07058_consen   63 DYQRQVQELNEEKRTLERELARA   85 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            67778888888888888887543

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=84.87  E-value=23  Score=30.12  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847          384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  428 (499)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  428 (499)
                      ..+.+++..+...+.+......+......+.+..+.+.+.+.++.
T Consensus        49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i   93 (156)
T CHL00118         49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE   93 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555444444445455555555555555444433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=84.87  E-value=13  Score=38.27  Aligned_cols=17  Identities=18%  Similarity=0.341  Sum_probs=8.0

Q ss_pred             ccchhhHHHHHHHHHHH
Q 010847          377 KDVRTDIDAIKEDKRVL  393 (499)
Q Consensus       377 ~~~~~~~~~l~~~~~~~  393 (499)
                      .+|+.++..|+..|+.+
T Consensus       107 ~~yQerLaRLe~dkesL  123 (861)
T KOG1899|consen  107 PEYQERLARLEMDKESL  123 (861)
T ss_pred             hHHHHHHHHHhcchhhh
Confidence            34444445555555544

>PTZ00421 coronin; Provisional

Probab=84.78  E-value=52  Score=34.06  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          144 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       144 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      +.+++.||.+      ..+.++|+.+.+-...-  ...  .-.-.++....++.+++.|+.+     ..+.+||+.++.
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l--~~h--~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~  201 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVI--KCH--SDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEE--cCC--CCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence            3577777754      35888998876532111  111  1111222223355577777654     358899988765

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=84.76  E-value=10  Score=32.28  Aligned_cols=11  Identities=27%  Similarity=0.241  Sum_probs=3.9

Q ss_pred             hccchHHHHHH
Q 010847          415 NSTHSELSKEL  425 (499)
Q Consensus       415 ~~~~~~~~~~~  425 (499)
                      +.+++..++++
T Consensus        49 ~~~l~~~~~el   59 (158)
T PF03938_consen   49 QKELQAKQKEL   59 (158)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus

Probab=84.73  E-value=6.3  Score=33.44  Aligned_cols=12  Identities=8%  Similarity=0.277  Sum_probs=4.6

Q ss_pred             HHHHhhccchHH
Q 010847          410 KIDEVNSTHSEL  421 (499)
Q Consensus       410 ~~~~~~~~~~~~  421 (499)
                      -++..+++++|.
T Consensus       113 ~ln~FR~qm~dl  124 (179)
T PF14723_consen  113 SLNSFREQMMDL  124 (179)
T ss_pred             HHHHHHHHHHHH
Confidence            333333343333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.68  E-value=4.8  Score=39.44  Aligned_cols=57  Identities=25%  Similarity=0.288  Sum_probs=37.8

Q ss_pred             hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      .+.+....+.-++..+++.+..+.+.++++++.+.++...+.++..++.+..+..++
T Consensus       208 ~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e  264 (344)
T PF12777_consen  208 KYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE  264 (344)
T ss_dssp             HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444566667777777777777777777777777777766666666665444443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.62  E-value=12  Score=32.96  Aligned_cols=50  Identities=26%  Similarity=0.379  Sum_probs=24.0

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010847          429 QGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      ..++.+..+.+.+++..+.+++++.+.+.    ...+++.+++...+++.++++
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~  176 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE  176 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555666666666666543333    233444444444444444443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.49  E-value=21  Score=34.08  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=10.2

Q ss_pred             HHHHhHHHHHHHHHHHHHhHHH
Q 010847          451 KMLESSQTIENEVQILRQQKSA  472 (499)
Q Consensus       451 ~~l~~~~~~~~e~~~~~~~~~~  472 (499)
                      ++.+....+..++..++.++.+
T Consensus       144 r~K~~~d~L~~e~~~Lre~L~~  165 (302)
T PF09738_consen  144 RQKRAHDSLREELDELREQLKQ  165 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333455555555555543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=84.30  E-value=27  Score=30.42  Aligned_cols=68  Identities=16%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             CccCcEEEEECCCCeeEEeeecCC--CCCCCccceEEEEcCcEEEEEcCCCCC--CCCCcEEEEECCCCceEecc
Q 010847          157 KLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       157 ~~~~~v~~yd~~t~~W~~~~~~~~--~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~  227 (499)
                      .....+|++|..++.|..+.....  --.|.   -+.-++|..|+|+=|...+  .--..+|+|++.++.-+.+.
T Consensus        85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly  156 (200)
T PF15525_consen   85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY  156 (200)
T ss_pred             ccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence            356789999999999877755221  11233   2334455444444443222  23357999999999887763

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=84.29  E-value=11  Score=32.03  Aligned_cols=9  Identities=0%  Similarity=0.040  Sum_probs=3.3

Q ss_pred             HHHhhccch
Q 010847          411 IDEVNSTHS  419 (499)
Q Consensus       411 ~~~~~~~~~  419 (499)
                      ++..+.+++
T Consensus        52 l~~~~~el~   60 (158)
T PF03938_consen   52 LQAKQKELQ   60 (158)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.11  E-value=33  Score=31.29  Aligned_cols=16  Identities=13%  Similarity=0.258  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHhHHHH
Q 010847          458 TIENEVQILRQQKSAF  473 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~  473 (499)
                      .+.++...+..+...+
T Consensus        85 r~~eey~~Lk~~in~~  100 (230)
T PF10146_consen   85 RLYEEYKPLKDEINEL  100 (230)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=84.08  E-value=5.7  Score=36.90  Aligned_cols=40  Identities=25%  Similarity=0.289  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 010847          424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEV  463 (499)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~  463 (499)
                      +.+.+..+++.+..|-++|+.++.+++++++.+.++..+.
T Consensus       249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~  288 (294)
T KOG4571|consen  249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV  288 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555666666666666666666555444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.08  E-value=13  Score=40.38  Aligned_cols=77  Identities=21%  Similarity=0.338  Sum_probs=35.5

Q ss_pred             hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHH----HHHHHHHHHhHHHHHHHHHHh
Q 010847          405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI----ENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~----~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      ..++.+++..+.++++.-.+++++...+...+.+..++-+...++.+++.+++..    =+|-.+++..+..+++.++++
T Consensus       414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~  493 (1200)
T KOG0964|consen  414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA  493 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444445555555555555555555422    223333344444555555444


Q ss_pred             h
Q 010847          481 T  481 (499)
Q Consensus       481 ~  481 (499)
                      +
T Consensus       494 ~  494 (1200)
T KOG0964|consen  494 E  494 (1200)
T ss_pred             H
Confidence            3

>PRK11519 tyrosine kinase; Provisional

Probab=83.89  E-value=9.7  Score=41.55  Aligned_cols=6  Identities=33%  Similarity=0.396  Sum_probs=2.8

Q ss_pred             ceeeee
Q 010847          490 GVWRWI  495 (499)
Q Consensus       490 ~~~~~~  495 (499)
                      +.|+-|
T Consensus       405 ~~~rIi  410 (719)
T PRK11519        405 GDVRIV  410 (719)
T ss_pred             CCeEEE
Confidence            445544

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=83.72  E-value=17  Score=38.23  Aligned_cols=45  Identities=18%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHH
Q 010847          430 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFE  474 (499)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~  474 (499)
                      ++.++..++...|.+++....+++..++    ++...++.++++++++.
T Consensus       209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3344444445555555555555555554    23333344444444443

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=83.71  E-value=7.5  Score=39.85  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=17.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  471 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~  471 (499)
                      +.++..++.++..++.++...-+.+.++.+++++.+
T Consensus       348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~  383 (458)
T COG3206         348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAE  383 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHH
Confidence            334444444444444444444445555555555544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=83.66  E-value=29  Score=34.93  Aligned_cols=89  Identities=12%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             cEEEEECCCCc----eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCC
Q 010847          212 DLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS  287 (499)
Q Consensus       212 ~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~  287 (499)
                      .+..||.....    |.+.     -..|..+-+.+..+..|+|.-|++.     .+++||+....-+..-.         
T Consensus       188 ~VtlwDv~g~sp~~~~~~~-----HsAP~~gicfspsne~l~vsVG~Dk-----ki~~yD~~s~~s~~~l~---------  248 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASEA-----HSAPCRGICFSPSNEALLVSVGYDK-----KINIYDIRSQASTDRLT---------  248 (673)
T ss_pred             eEEEEeccCCCcccchhhh-----ccCCcCcceecCCccceEEEecccc-----eEEEeecccccccceee---------
Confidence            46777765432    4443     1223444455566778888888654     58899987654332211         


Q ss_pred             CCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          288 EGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       288 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      +.+.+..+.+..+.++++.|-..|    .++.||+.
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G----~~i~YD~R  280 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKG----ELIAYDMR  280 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCc----eEEEEecc
Confidence            112233344444557777776665    66677764

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=83.66  E-value=13  Score=36.85  Aligned_cols=14  Identities=14%  Similarity=0.176  Sum_probs=5.3

Q ss_pred             HHHHHHHHhHHHHH
Q 010847          461 NEVQILRQQKSAFE  474 (499)
Q Consensus       461 ~e~~~~~~~~~~~~  474 (499)
                      +-++..+-++..+|
T Consensus       305 E~~Es~qtRisklE  318 (395)
T PF10267_consen  305 EVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

Its function is unknown.

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=83.58  E-value=18  Score=36.83  Aligned_cols=16  Identities=25%  Similarity=0.285  Sum_probs=6.4

Q ss_pred             HHHHhhhhhhHHHHHH
Q 010847          431 QLVAERSRCFKLEAQI  446 (499)
Q Consensus       431 ~~~~~~~~~~~~~~~~  446 (499)
                      +++.++++.+.++..+
T Consensus       640 ~a~~ERee~eRl~~er  655 (940)
T KOG4661|consen  640 KAAVEREELERLKAER  655 (940)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333344444444333

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=83.53  E-value=0.35  Score=48.90  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQ  431 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  431 (499)
                      ++..|++.|....+.++|.|++|...+++
T Consensus       377 EI~~LkErL~~S~rkLeEyErrLl~QEqq  405 (495)
T PF12004_consen  377 EIQSLKERLRMSHRKLEEYERRLLSQEQQ  405 (495)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            55556666666666666666655444443

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=83.48  E-value=29  Score=30.13  Aligned_cols=47  Identities=11%  Similarity=0.199  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      ..+.+++..+...+........+....+.+.+.++.+.+.+.+++..
T Consensus        45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~   91 (173)
T PRK13453         45 DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILE   91 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544444444545555555555555555444433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=83.44  E-value=15  Score=37.80  Aligned_cols=17  Identities=35%  Similarity=0.427  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHhhhHH
Q 010847          383 IDAIKEDKRVLELSLTE  399 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~  399 (499)
                      +++..+..++++-.+.+
T Consensus       134 VeaQgEKIrDLE~cie~  150 (861)
T KOG1899|consen  134 VEAQGEKIRDLETCIEE  150 (861)
T ss_pred             HHHhhhhHHHHHHHHHH
Confidence            33344444444444433

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=83.34  E-value=24  Score=29.38  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=10.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHH
Q 010847          435 ERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       435 ~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +++++..++..+..+++++..++
T Consensus        99 l~~~~~~l~~~~~~l~~~l~~~~  121 (140)
T PRK03947         99 LDKRKEELEKALEKLEEALQKLA  121 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.33  E-value=27  Score=31.86  Aligned_cols=57  Identities=16%  Similarity=0.086  Sum_probs=27.6

Q ss_pred             EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC-CCCCCc
Q 010847          264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR-DIPRPK  331 (499)
Q Consensus       264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~-~W~~~~  331 (499)
                      |.-+.....|+.-..  ...|.+.++.+.   .+.+ +.|-|-||.+     .+.++..+.. +|..+.
T Consensus       238 wt~~~e~e~wk~tll--~~f~~~~w~vSW---S~sG-n~LaVs~GdN-----kvtlwke~~~Gkw~~v~  295 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLL--EEFPDVVWRVSW---SLSG-NILAVSGGDN-----KVTLWKENVDGKWEEVG  295 (299)
T ss_pred             EEecCccCccccccc--ccCCcceEEEEE---eccc-cEEEEecCCc-----EEEEEEeCCCCcEEEcc
Confidence            344445567764211  112333333332   2333 4666666654     5666666544 777654

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=83.27  E-value=17  Score=39.54  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=7.6

Q ss_pred             hhhhhHHHHHHhhccchHHH
Q 010847          403 ENSRFREKIDEVNSTHSELS  422 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~  422 (499)
                      ++..|+.+++..+..+.+..
T Consensus       344 dve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  344 DVEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=83.27  E-value=30  Score=30.07  Aligned_cols=46  Identities=7%  Similarity=0.104  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      .|.+++..+...+.+......+..+.+.+.+..+.+.+.+.+++..
T Consensus        44 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~   89 (173)
T PRK13460         44 ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA   89 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555545444444444444555555555555555444433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.17  E-value=19  Score=39.53  Aligned_cols=7  Identities=29%  Similarity=0.411  Sum_probs=3.5

Q ss_pred             EEcCCCC
Q 010847          305 AFGGYNG  311 (499)
Q Consensus       305 v~GG~~~  311 (499)
                      +.||...
T Consensus       661 lTGGs~~  667 (1174)
T KOG0933|consen  661 LTGGSRS  667 (1174)
T ss_pred             ccCCCCC
Confidence            3466543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=83.13  E-value=17  Score=35.59  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             HHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010847          393 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA  434 (499)
Q Consensus       393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (499)
                      +..+....+.+..-++..++..+.++.++++|..++.++.-.
T Consensus        32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~   73 (459)
T KOG0288|consen   32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR   73 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444455556666666666666666665555544433

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.13  E-value=18  Score=33.69  Aligned_cols=14  Identities=29%  Similarity=0.605  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHhHH
Q 010847          458 TIENEVQILRQQKS  471 (499)
Q Consensus       458 ~~~~e~~~~~~~~~  471 (499)
                      +|+++...+++++.
T Consensus       388 ~Leee~~~f~~rk~  401 (406)
T KOG3859|consen  388 QLEEEVNAFQRRKT  401 (406)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.00  E-value=21  Score=39.14  Aligned_cols=17  Identities=18%  Similarity=0.298  Sum_probs=6.9

Q ss_pred             cchHHHHHHHHHHHHHH
Q 010847          417 THSELSKELSSVQGQLV  433 (499)
Q Consensus       417 ~~~~~~~~~~~~~~~~~  433 (499)
                      ++.+++++++..++.++
T Consensus       788 rlkdl~keik~~k~~~e  804 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAE  804 (1174)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444433333

>smart00284 OLF Olfactomedin-like domains

Probab=82.90  E-value=40  Score=31.28  Aligned_cols=165  Identities=12%  Similarity=-0.002  Sum_probs=81.2

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEC----CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEEC
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDL----ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL  218 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~  218 (499)
                      ++++|++.|.+.   ..+.+..|..    ....+...-   .+|.+-.+.+.+++++. +|.--.     .++.|.+||+
T Consensus        34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngs-lYY~~~-----~s~~iiKydL  101 (255)
T smart00284       34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGS-LYFNKF-----NSHDICRFDL  101 (255)
T ss_pred             CceEEEEccccC---CCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECce-EEEEec-----CCccEEEEEC
Confidence            578888877542   1345666643    233332221   35667777777888544 666332     2467999999


Q ss_pred             CCCceEe---cccC---CCCCCcCccc---EEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCC
Q 010847          219 QTNEWSQ---PEIK---GDLVTGRAGH---AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEG  289 (499)
Q Consensus       219 ~~~~W~~---~~~~---~~~p~~r~~~---~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~  289 (499)
                      .+.+-..   ++..   ...|-...++   -.++..+-|+|+=....+...--+-.+|+.+..-.+.=..+.  +....+
T Consensus       102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~--~k~sa~  179 (255)
T smart00284      102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTY--NKRSAS  179 (255)
T ss_pred             CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCC--Cccccc
Confidence            9987543   2211   1112211122   233444555555332222222234467776654222211111  112222


Q ss_pred             CceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          290 LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       290 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      .++.+     |..||++-........-.+.||+.+.+
T Consensus       180 naFmv-----CGvLY~~~s~~~~~~~I~yayDt~t~~  211 (255)
T smart00284      180 NAFMI-----CGILYVTRSLGSKGEKVFYAYDTNTGK  211 (255)
T ss_pred             ccEEE-----eeEEEEEccCCCCCcEEEEEEECCCCc
Confidence            22222     346777754333333457889987754

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=82.89  E-value=0.38  Score=52.19  Aligned_cols=75  Identities=25%  Similarity=0.408  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHH---HHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHhH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~e~~~~l~~~  456 (499)
                      ++.++++....+......+.+...++.++.+++.++.++.   ++.+.++.++..+++   +..+++..+.-.+++|+.+
T Consensus       248 l~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~  327 (713)
T PF05622_consen  248 LRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDL  327 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444333333333333333344444443333333332   223344444444433   3344444444444444444


Q ss_pred             H
Q 010847          457 Q  457 (499)
Q Consensus       457 ~  457 (499)
                      .
T Consensus       328 ~  328 (713)
T PF05622_consen  328 E  328 (713)
T ss_dssp             -
T ss_pred             H
Confidence            4

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=82.79  E-value=31  Score=29.99  Aligned_cols=47  Identities=9%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847          384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      ..+.+++..+...+........+....+++.+.++++.+++.++...
T Consensus        45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~   91 (175)
T PRK14472         45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR   91 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555544444555555555566666655555444433

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=82.64  E-value=30  Score=30.41  Aligned_cols=95  Identities=15%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH----H
Q 010847          384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT----I  459 (499)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~----~  459 (499)
                      ++|+.+.++.+..+.+.......-+..+........+.+.+++.++.-++..+..+...+.-...-+++|.+..+    -
T Consensus        70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaA  149 (188)
T PF05335_consen   70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAA  149 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444333333444444444444444444444444544455555444444444444433332    2


Q ss_pred             HHHHHHHHHhHHHHHHHHH
Q 010847          460 ENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       460 ~~e~~~~~~~~~~~~~~~~  478 (499)
                      .++.+.|.+++.....+++
T Consensus       150 k~Rve~L~~QL~~Ar~D~~  168 (188)
T PF05335_consen  150 KRRVEELQRQLQAARADYE  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555554444443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.60  E-value=4.6  Score=31.86  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=13.3

Q ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhh
Q 010847          406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  440 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (499)
                      .+-.++.+++..+.+..+|-..++-+++.+++++.
T Consensus        19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~   53 (107)
T PF06156_consen   19 QLLEELEELKKQLQELLEENARLRIENEHLRERLE   53 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444333

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.59  E-value=25  Score=31.97  Aligned_cols=42  Identities=2%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      ++.+..........+.........++.++.+.+....+++..
T Consensus        33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433334444444445555666666666666666544

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.50  E-value=17  Score=35.97  Aligned_cols=19  Identities=26%  Similarity=0.499  Sum_probs=7.3

Q ss_pred             hhHHHHHHhhccchHHHHH
Q 010847          406 RFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~  424 (499)
                      +|...+.+.+.+..+..++
T Consensus       297 KL~~~l~~~~~~~~~ltqq  315 (521)
T KOG1937|consen  297 KLMGKLAELNKQMEELTQQ  315 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.47  E-value=10  Score=32.81  Aligned_cols=60  Identities=17%  Similarity=0.314  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccc--hHHHHHHHHHHHHHHHhhhhhhHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH--SELSKELSSVQGQLVAERSRCFKL  442 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  442 (499)
                      +..+..+...+.+.+...+.+...|+.++..+....  ++....+.+++.++..++.++..+
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l  135 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL  135 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555555555555666666666655544  233333444444444433333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=82.46  E-value=37  Score=30.52  Aligned_cols=45  Identities=24%  Similarity=0.195  Sum_probs=23.7

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      .++++-++.+++++-+.++.+++.++++-.-|-.+..|+..+|..
T Consensus        92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~  136 (292)
T KOG4005|consen   92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL  136 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            444444555555555555666666655555555555555444443

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=82.36  E-value=14  Score=32.59  Aligned_cols=25  Identities=16%  Similarity=0.316  Sum_probs=16.8

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847          454 ESSQTIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       454 ~~~~~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .++..++...+.+.++....+.+.+
T Consensus       159 ~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  159 KEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677777777777776666655

>PRK13684 Ycf48-like protein; Provisional

Probab=82.33  E-value=51  Score=32.12  Aligned_cols=140  Identities=10%  Similarity=0.062  Sum_probs=67.8

Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEE-ECCCCeeEEeeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      +++=+-.-.+|..+.+    +..-.-+.+....+..|+..|..+      .++.- |....+|..+..    +..+.-.+
T Consensus       154 i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~  219 (334)
T PRK13684        154 IYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQS  219 (334)
T ss_pred             EEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCccccee
Confidence            5554445568998852    222233344444444444433221      23322 334467988753    33455555


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEE-C-CCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEE
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      ++...++.++++|..+       ..++. . .-.+|+.+.. +........++++.. ++.++++|...      -++.-
T Consensus       220 i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S  285 (334)
T PRK13684        220 MGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGNG------TLLVS  285 (334)
T ss_pred             eeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCCC------eEEEe
Confidence            5555566688887532       22332 2 2347997531 111111122333333 45677776521      13333


Q ss_pred             ECCCCceEEecc
Q 010847          267 NMTKLAWSILTS  278 (499)
Q Consensus       267 d~~~~~W~~l~~  278 (499)
                      .....+|..+..
T Consensus       286 ~d~G~tW~~~~~  297 (334)
T PRK13684        286 KDGGKTWEKDPV  297 (334)
T ss_pred             CCCCCCCeECCc
Confidence            334568998753

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=82.32  E-value=6.7  Score=41.47  Aligned_cols=8  Identities=38%  Similarity=0.223  Sum_probs=3.1

Q ss_pred             cccccCCC
Q 010847          482 SVQTQGSG  489 (499)
Q Consensus       482 ~~q~q~~~  489 (499)
                      .+|...++
T Consensus       298 l~~ll~sg  305 (1064)
T KOG1144|consen  298 LKQLLASG  305 (1064)
T ss_pred             HHHHHhcC
Confidence            33334444

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=82.31  E-value=34  Score=30.06  Aligned_cols=44  Identities=9%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  428 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  428 (499)
                      .+.+++..+...+........+....+.+.+..+.+.+.+.++.
T Consensus        52 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~i   95 (184)
T CHL00019         52 LLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEI   95 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555544444444444444444555555555554444433

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=82.30  E-value=32  Score=31.52  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=23.7

Q ss_pred             chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847          379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      ++..++.+..+.+.....+.....+...|..+|+..+.+++...+.
T Consensus       110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR  155 (338)
T KOG3647|consen  110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR  155 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555555555554444443

>TIGR00634 recN DNA repair protein RecN

Probab=82.18  E-value=6.1  Score=41.70  Aligned_cols=13  Identities=8%  Similarity=0.181  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHhH
Q 010847          444 AQIAELQKMLESS  456 (499)
Q Consensus       444 ~~~~e~~~~l~~~  456 (499)
                      ....++++++..+
T Consensus       329 ~~~~~l~~eL~~l  341 (563)
T TIGR00634       329 EYAEKIKEELDQL  341 (563)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=82.09  E-value=42  Score=31.16  Aligned_cols=40  Identities=5%  Similarity=0.184  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  424 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  424 (499)
                      .+++++..+...+.+......+.++..++.+.++++.+++
T Consensus        33 ~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~e   72 (250)
T PRK14474         33 VMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQ   72 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433333333333344444444444333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=82.02  E-value=7.3  Score=36.50  Aligned_cols=32  Identities=28%  Similarity=0.211  Sum_probs=13.1

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847          431 QLVAERSRCFKLEAQIAELQKMLESSQTIENE  462 (499)
Q Consensus       431 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e  462 (499)
                      +++.++..+.+|+-++++++.+++++++.+++
T Consensus        62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~   93 (263)
T PRK10803         62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ   93 (263)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444443333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.90  E-value=35  Score=33.56  Aligned_cols=41  Identities=17%  Similarity=0.198  Sum_probs=16.9

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  451 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  451 (499)
                      ...++.+++..-++..+.+.++.+.+++.......+.++.+
T Consensus       261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~  301 (359)
T PF10498_consen  261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTR  301 (359)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33334444444444444444444444444444333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=81.89  E-value=0.44  Score=48.19  Aligned_cols=14  Identities=29%  Similarity=0.513  Sum_probs=0.0

Q ss_pred             chhhHHHHHHHHHH
Q 010847          379 VRTDIDAIKEDKRV  392 (499)
Q Consensus       379 ~~~~~~~l~~~~~~  392 (499)
                      |..||..||++.+.
T Consensus       374 YEqEI~~LkErL~~  387 (495)
T PF12004_consen  374 YEQEIQSLKERLRM  387 (495)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555554443

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=81.85  E-value=12  Score=41.16  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             HHHhhhhhHHHHHH-hhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847          400 VRTENSRFREKIDE-VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       400 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .+.+.+.++.++++ .++-......+++..+.....++.++.+++.++.++-+...+...|+++.+..++..+.+.+.++
T Consensus       321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~  400 (754)
T TIGR01005       321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYR  400 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555554443 22222334445555666666667777777777777777777777777777777777776666666


Q ss_pred             Hhhccc
Q 010847          479 RATSVQ  484 (499)
Q Consensus       479 ~~~~~q  484 (499)
                      +++..+
T Consensus       401 e~~~~~  406 (754)
T TIGR01005       401 QAASRQ  406 (754)
T ss_pred             HHHHhh
Confidence            554333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK02119 hypothetical protein; Provisional

Probab=81.77  E-value=9.7  Score=27.70  Aligned_cols=14  Identities=7%  Similarity=0.154  Sum_probs=5.3

Q ss_pred             HHHHHHhHHHHHHH
Q 010847          463 VQILRQQKSAFEQE  476 (499)
Q Consensus       463 ~~~~~~~~~~~~~~  476 (499)
                      +..+++++..+.+.
T Consensus        39 id~L~~ql~~L~~r   52 (73)
T PRK02119         39 IDKMQVQLRYMANK   52 (73)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=81.72  E-value=25  Score=36.04  Aligned_cols=9  Identities=0%  Similarity=0.047  Sum_probs=4.7

Q ss_pred             CCEEEEEcc
Q 010847           92 GTKLLILGG  100 (499)
Q Consensus        92 ~~~iyv~GG  100 (499)
                      .+.+++.++
T Consensus        37 ~~~v~~~~~   45 (607)
T KOG0240|consen   37 ENTVVLETT   45 (607)
T ss_pred             cceEEEecc
Confidence            445555554

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=81.67  E-value=28  Score=29.20  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847          458 TIENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      +++++++++-++..++++++++..
T Consensus       112 ~l~~~l~~l~~~~~~l~~~~q~~~  135 (145)
T COG1730         112 KLQQALAELAQRIEQLEQEAQQLQ  135 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=81.48  E-value=16  Score=37.65  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=8.7

Q ss_pred             HHHhhhhhhHHHHHHHHHHHH
Q 010847          432 LVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       432 ~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      +...+.+...++.++..+.++
T Consensus       157 ~~~~krr~~~le~e~~~Lk~e  177 (546)
T KOG0977|consen  157 INTLKRRIKALEDELKRLKAE  177 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444443333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=81.40  E-value=35  Score=29.63  Aligned_cols=49  Identities=10%  Similarity=0.188  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  431 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  431 (499)
                      ...+.+++..+...+........+....+.+.+..+++..++.+++..+
T Consensus        45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~   93 (174)
T PRK07352         45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD   93 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666665555555555555566666666666666665554443

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=81.36  E-value=10  Score=36.83  Aligned_cols=28  Identities=11%  Similarity=0.250  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      -++++.-=.++++.|.++...+.+.+.+
T Consensus       162 aeELEgyCsqLk~nCrkVt~SVedaEiK  189 (558)
T PF15358_consen  162 AEELEGYCSQLKENCRKVTRSVEDAEIK  189 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3333333444445555555555444443

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=81.20  E-value=13  Score=29.46  Aligned_cols=70  Identities=24%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---------------------------------HHHHHH
Q 010847          417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------------------------TIENEV  463 (499)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---------------------------------~~~~e~  463 (499)
                      ++++.-.+++..+++++........++.++.|.+.-+.++.                                 .++.++
T Consensus         4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i   83 (110)
T TIGR02338         4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV   83 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHhHHHHHHHHHHhhccccc
Q 010847          464 QILRQQKSAFEQEMERATSVQTQ  486 (499)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~q~q  486 (499)
                      ..+.++++.++++++++++..++
T Consensus        84 ~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        84 KTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.17  E-value=43  Score=33.03  Aligned_cols=8  Identities=0%  Similarity=0.119  Sum_probs=2.9

Q ss_pred             HHHhhccc
Q 010847          411 IDEVNSTH  418 (499)
Q Consensus       411 ~~~~~~~~  418 (499)
                      ++.++.++
T Consensus       306 ~qqleeen  313 (502)
T KOG0982|consen  306 DQQLEEEN  313 (502)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=81.15  E-value=14  Score=35.62  Aligned_cols=11  Identities=18%  Similarity=0.356  Sum_probs=4.1

Q ss_pred             hhhhhHHHHHH
Q 010847          436 RSRCFKLEAQI  446 (499)
Q Consensus       436 ~~~~~~~~~~~  446 (499)
                      +.+..++...+
T Consensus        45 kkrLk~L~~sL   55 (330)
T PF07851_consen   45 KKRLKELKKSL   55 (330)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

; GO: 0016021 integral to membrane

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=81.12  E-value=18  Score=37.81  Aligned_cols=15  Identities=0%  Similarity=0.479  Sum_probs=6.4

Q ss_pred             HhhhhhHHHHHHhhc
Q 010847          402 TENSRFREKIDEVNS  416 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~  416 (499)
                      .+.+.+++.+++++.
T Consensus       191 ~~~~~yk~~v~~i~~  205 (555)
T TIGR03545       191 QDLEEYKKRLEAIKK  205 (555)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            344444444444433

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PRK10698 phage shock protein PspA; Provisional

Probab=81.04  E-value=33  Score=31.25  Aligned_cols=45  Identities=9%  Similarity=0.194  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHH
Q 010847          381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL  425 (499)
Q Consensus       381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  425 (499)
                      .-++.+.+...++...+.........+++++...+....++++.-
T Consensus        31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA   75 (222)
T PRK10698         31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA   75 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335555555555544555555566667777777777776666553

>TIGR00606 rad50 rad50

Probab=81.02  E-value=15  Score=43.24  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=14.7

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010847          429 QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQIL  466 (499)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~  466 (499)
                      +...+..++.+..++.+++++++++..+.....+.+++
T Consensus       230 q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l  267 (1311)
T TIGR00606       230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL  267 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444443333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3990 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.00  E-value=8.1  Score=34.82  Aligned_cols=16  Identities=31%  Similarity=0.351  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHhhhH
Q 010847          383 IDAIKEDKRVLELSLT  398 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~  398 (499)
                      |++|+++...++..+.
T Consensus       227 i~~lkeeia~Lkk~L~  242 (305)
T KOG3990|consen  227 IQKLKEEIARLKKLLH  242 (305)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6677777666555444

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=80.96  E-value=7.6  Score=37.63  Aligned_cols=89  Identities=17%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH--HH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--IE  460 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~  460 (499)
                      ++.|+.+=..+.+.++.-+++.++|+..-.+++..-...++..+..+..--.++....-||.+++-++++||....  .+
T Consensus       141 Vq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe  220 (558)
T PF15358_consen  141 VQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQE  220 (558)
T ss_pred             HHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhh
Confidence            4455555555556666555666666555555544444444444443333333344455566666666666666553  24


Q ss_pred             HHHHHHHHhHH
Q 010847          461 NEVQILRQQKS  471 (499)
Q Consensus       461 ~e~~~~~~~~~  471 (499)
                      .+.+++.|+++
T Consensus       221 ~e~qELeqkle  231 (558)
T PF15358_consen  221 AEWQELEQKLE  231 (558)
T ss_pred             hhHHHHHHHHh
Confidence            55555555444

>PRK14011 prefoldin subunit alpha; Provisional

Probab=80.96  E-value=27  Score=29.31  Aligned_cols=13  Identities=8%  Similarity=0.463  Sum_probs=4.9

Q ss_pred             hhhHHHHHHhhcc
Q 010847          405 SRFREKIDEVNST  417 (499)
Q Consensus       405 ~~l~~~~~~~~~~  417 (499)
                      ..|.+.++.++..
T Consensus        20 e~L~~si~~L~~a   32 (144)
T PRK14011         20 QKLQEELSSIDMM   32 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK15335 type III secretion system protein SpaM; Provisional

Probab=80.87  E-value=26  Score=28.09  Aligned_cols=33  Identities=9%  Similarity=0.221  Sum_probs=14.1

Q ss_pred             HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccch
Q 010847          387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHS  419 (499)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  419 (499)
                      +...+.+....+....+.+-|+..++....+..
T Consensus        29 ~~~e~~ld~e~Eai~~q~agLk~LL~~~r~e~~   61 (147)
T PRK15335         29 QDEDRGLQAEEEAILEQIAGLKLLLDTLRAENR   61 (147)
T ss_pred             HHHHHHHhHHHHHHHHHHhHHHHHHHHhchhcc
Confidence            333333333333333444555555555444433

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=80.77  E-value=36  Score=31.63  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          420 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      ...+.++..+.+++.+.+.+.+.+.+++|+++++
T Consensus       197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i  230 (269)
T PF05278_consen  197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERI  230 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=80.74  E-value=25  Score=30.22  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR  438 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (499)
                      +...+..+.+++..+...++....+.+.++..+..+++.++.-.++.+.+-.+++.
T Consensus        76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~  131 (203)
T KOG3433|consen   76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI  131 (203)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            55667777788888888888888888887777777666555544555555544443

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=80.73  E-value=3.9  Score=41.12  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010847          436 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT  485 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~  485 (499)
                      ++++.+++.++.+++.++.+..+..+++.++.+|+++++++++++++...
T Consensus       248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~  297 (406)
T PF02388_consen  248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA  297 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444445556666666666666666665554433

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=80.53  E-value=23  Score=33.98  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVA  434 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (499)
                      +..++..++...+.++...++++...+.....
T Consensus       136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~  167 (301)
T PF14362_consen  136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQC  167 (301)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555554444444443333

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.49  E-value=22  Score=30.07  Aligned_cols=19  Identities=21%  Similarity=0.235  Sum_probs=7.1

Q ss_pred             HHHHHHHhhhhhhHHHHHH
Q 010847          428 VQGQLVAERSRCFKLEAQI  446 (499)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~  446 (499)
                      ++.++.+++.+.+.|+.++
T Consensus       109 l~~e~~~l~~~~e~Le~e~  127 (161)
T TIGR02894       109 LKNQNESLQKRNEELEKEL  127 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.25  E-value=24  Score=36.15  Aligned_cols=18  Identities=22%  Similarity=0.346  Sum_probs=7.2

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010847          461 NEVQILRQQKSAFEQEME  478 (499)
Q Consensus       461 ~e~~~~~~~~~~~~~~~~  478 (499)
                      +++.+.+.++...+.+++
T Consensus       291 ~~l~~~~~~l~~~~~~l~  308 (457)
T TIGR01000       291 QEITDLNQKLLELESKIK  308 (457)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=80.12  E-value=59  Score=31.37  Aligned_cols=122  Identities=18%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             ceEEEEECCCC-----cEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCC
Q 010847          109 MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPP  182 (499)
Q Consensus       109 ~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p  182 (499)
                      ..+++|+....     +++.+..   .+..-.-++++.++++|++.-|        +.+++|++...+ +.......   
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~---  127 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYD---  127 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE----
T ss_pred             cEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheec---
Confidence            45899998885     5665542   2222335667778999777655        358888887777 77776532   


Q ss_pred             CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeC
Q 010847          183 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGG  253 (499)
Q Consensus       183 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG  253 (499)
                      .+....++..+ ++ .+++|-...+   -.++.|+....+-..+.   .-+.++.-.++..+ ++. .++++
T Consensus       128 ~~~~i~sl~~~-~~-~I~vgD~~~s---v~~~~~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~-~~i~~  190 (321)
T PF03178_consen  128 SPFYITSLSVF-KN-YILVGDAMKS---VSLLRYDEENNKLILVA---RDYQPRWVTAAEFLVDED-TIIVG  190 (321)
T ss_dssp             BSSSEEEEEEE-TT-EEEEEESSSS---EEEEEEETTTE-EEEEE---EESS-BEEEEEEEE-SSS-EEEEE
T ss_pred             ceEEEEEEecc-cc-EEEEEEcccC---EEEEEEEccCCEEEEEE---ecCCCccEEEEEEecCCc-EEEEE
Confidence            23334444444 55 4555543221   13456676555566553   23345665566666 555 44444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=80.08  E-value=29  Score=30.25  Aligned_cols=23  Identities=13%  Similarity=0.260  Sum_probs=10.1

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHh
Q 010847          433 VAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       433 ~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ...+++...+..+...+++++..
T Consensus        80 ~h~keKl~~~~~~~~~l~~~l~~  102 (177)
T PF13870_consen   80 THVKEKLHFLSEELERLKQELKD  102 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	499
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		6e-04

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 94  KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 153
           ++ ++GG+  +S  S  V  +D   +  GV  +   + V RG    T +G  + + GG D
Sbjct: 64  RIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 154 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 213
            SR+  +   + D     W  +   QT      + +  + A+  +   GG       N +
Sbjct: 123 GSRRHTSMERY-DPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 214 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 273
              D  T  W+       + T R+G     ++++ Y+VGG D           N+   +W
Sbjct: 178 EKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
           + +TS      + +    V + ++ G   L A  GY+G 
Sbjct: 235 TTVTS------MTTPRCYVGATVLRGR--LYAIAGYDGN 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-40
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	7e-34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-27
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-10
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-22
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-19
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	7e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	1e-07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  154 bits (390), Expect = 1e-40
 Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 31/282 (10%)

Query: 86  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSVTLV 142
             +   G  +  +GG      + ++   + +  +   +  +  +S +VPVAR  H+ T +
Sbjct: 391 GDVDVAGNDVFYMGGSNPYRVNEILQ--LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI 448

Query: 143 G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 200
              ++L++ GG     + L+D    D++T  W    + ++    R+ HSA    +  +++
Sbjct: 449 SRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSHTRFRHSACSLPDGNVLI 505

Query: 201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW---YIVGGGDNN 257
            GG +       + + ++    +     K +        AG+  D       I+GGG  +
Sbjct: 506 LGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD 562

Query: 258 NGC----QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-- 311
                        +       I    K ++PL     S    I      L+  GG +   
Sbjct: 563 QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--TPRKLLIVGGTSPSG 620

Query: 312 --KYNNEVFV-----MRLKPRDIPRPKIFQSPAAAAAAASVT 346
                N +         L    I R          A  + V+
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  136 bits (344), Expect = 2e-34
 Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 50/275 (18%)

Query: 11  PYDLWVTLPVSGARPSPRY----------KKLYIVGG-SRNGRFLSDVQVFDLRSLAWSN 59
             D+      S   P  R            +L ++GG     + LSD  +FD+++  WS 
Sbjct: 423 KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWS- 481

Query: 60  LRLETELDADKTEDSGLLEVLP-PMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLE 117
                           +++ L      H         +LILGG    +    ++ + ++ 
Sbjct: 482 ----------------MIKSLSHTRFRHSACSLPDGNVLILGG---VTEGPAMLLY-NVT 521

Query: 118 TNLCGVMETSGKVPVARGGHS---VTLVGSRL-IIFGGEDRSRKLLNDVHFLDLE----T 169
             +   +    +        +      V  +  I+ GG      + +       +    T
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF---NDLHVLDLQTNEWSQP 226
                ++  Q P   RY         R L++ GG S S  F   N +  LD  +   +  
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 227 EIKGDLVTG----RAGHAGITIDEN-WYIVGGGDN 256
            I   +        AG + ++      +I+GGG  
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  134 bits (339), Expect = 7e-34
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 21/302 (6%)

Query: 57  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 116
           W +    T+ +  K E    LE       H ++   T             D  I      
Sbjct: 313 WESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL- 371

Query: 117 ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 176
            T          + P+ R    V + G+ +   GG +  R  +N++  L +     D   
Sbjct: 372 -TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKN 428

Query: 177 VTQTP---PAPRYDHSA-ALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGD 231
           +  +    P  R  H+   +  N  L++ GG  +     +D  + D++T EWS       
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI---KS 485

Query: 232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 291
           L   R  H+  ++ +   ++ GG         ++ N+T+  +  +T  K      S   +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVT-PKDEFFQNSLVSA 542

Query: 292 VCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD----IPRPKIFQSPAAAAAAASV 345
                   +  ++  GG+  +   +++  + +    +    I   K  Q P      + +
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602

Query: 346 TA 347
             
Sbjct: 603 KY 604

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  130 bits (328), Expect = 2e-32
 Identities = 45/331 (13%), Positives = 90/331 (27%), Gaps = 42/331 (12%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRY--------KKLYIVGGSRNGRFLSDVQVFDL 52
            D     + L  D    L +    P  R           ++ +GGS   R ++++    +
Sbjct: 362 FDRSISEINLTVDEDYQL-LECECPINRKFGDVDVAGNDVFYMGGSNPYR-VNEILQLSI 419

Query: 53  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM--VKWGTKLLILGGHYKKSSDSMI 110
                    +E              EV      H    +    +LL++GG          
Sbjct: 420 HYDKIDMKNIEVSSS----------EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSD 469

Query: 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLET 169
               D++T           +   R  HS   +    ++I GG          +   ++  
Sbjct: 470 NWIFDMKTR---EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAMLLYNVTE 522

Query: 170 MTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFND-LHVLDLQTNEWSQ 225
             +  V             +         + +I+ GG       +D   +        ++
Sbjct: 523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATE 582

Query: 226 PEIK----GDLVTGRAGHAGITIDENWYIVGGGDNNNGC----QETIVLNMTKLAWSILT 277
           P          +  R G     I     ++ GG + +G        I L+      + + 
Sbjct: 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642

Query: 278 SVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 308
             +      S  L+  S +      +   GG
Sbjct: 643 ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  111 bits (280), Expect = 1e-27
 Identities = 58/300 (19%), Positives = 103/300 (34%), Gaps = 47/300 (15%)

Query: 21  SGARPSPRY---KKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 76
            G R   R    + L +VGG       +  V+ +D ++  WS                  
Sbjct: 3   QGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF----------------- 45

Query: 77  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 132
              LP +         V    ++ ++GG+  +S  S +    D   +  GV  +   + V
Sbjct: 46  ---LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL-DYTADEDGVWYSVAPMNV 101

Query: 133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAA 191
            RG    T +G  + + GG D SR     +   D     W  +          R      
Sbjct: 102 RRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSML----GDMQTAREGAGLV 156

Query: 192 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV 251
           +  +  +   GG       N +   D  T  W+       + T R+G     ++++ Y+V
Sbjct: 157 VA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSGAGVALLNDHIYVV 212

Query: 252 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 311
           GG D           N+   +W+ +T       + +    V + ++ G   L A  GY+G
Sbjct: 213 GGFDGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRG--RLYAIAGYDG 264

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 95.4 bits (238), Expect = 5e-22
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 44/224 (19%)

Query: 31  KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SDH 86
            +Y+ GG    R  + ++ +D     WS                    +L  M       
Sbjct: 114 MIYVSGGFDGSRRHTSMERYDPNIDQWS--------------------MLGDMQTAREGA 153

Query: 87  CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSVTLVG 143
            +V     +  LGG+   +  + + ++ D  T        M         R G  V L+ 
Sbjct: 154 GLVVASGVIYCLGGYDGLNILNSVEKY-DPHTGHWTNVTPM------ATKRSGAGVALLN 206

Query: 144 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFG 202
             + + GG D +   L+ V   ++ T +W  V    T    PR    A +   R L    
Sbjct: 207 DHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTV----TSMTTPRCYVGATVLRGR-LYAIA 260

Query: 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 246
           G   +   + +   D   + W    +   + T R       + E
Sbjct: 261 GYDGNSLLSSIECYDPIIDSWE---VVTSMGTQRCDAGVCVLRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 88.9 bits (221), Expect = 7e-20
 Identities = 53/286 (18%), Positives = 90/286 (31%), Gaps = 60/286 (20%)

Query: 13  DLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRS---LAWSNLR 61
             W  LP   +    R          ++Y++GG      LS V+  D  +     W +  
Sbjct: 41  QEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-- 95

Query: 62  LETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 117
                             + PM            G  + + GG       + + R+ D  
Sbjct: 96  ------------------VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY-DPN 136

Query: 118 TN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 174
            +   + G M        AR G  + +    +   GG D     LN V   D  T  W  
Sbjct: 137 IDQWSMLGDM------QTAREGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHW-- 187

Query: 175 VEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 232
              T   P    R     AL  N ++ V GG   +   + +   +++T+ W+       +
Sbjct: 188 ---TNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT---VTSM 240

Query: 233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278
            T R       +    Y + G D N+        +    +W ++TS
Sbjct: 241 TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 16/173 (9%)

Query: 142 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDHSAALHANRYLI 199
               L++ GG    +  ++ V   D +T  W     +  P     R   ++    +R + 
Sbjct: 13  ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-----SFLPSITRKRRYVASVSLHDR-IY 66

Query: 200 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG 259
           V GG       + +  LD   +E         +   R      T+ +  Y+ GG D +  
Sbjct: 67  VIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR 126

Query: 260 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
                  +     WS+L        + +        +  G   +   GGY+G 
Sbjct: 127 HTSMERYDPNIDQWSMLG------DMQTAREGAGLVVASG--VIYCLGGYDGL 171

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  107 bits (269), Expect = 4e-26
 Identities = 52/308 (16%), Positives = 87/308 (28%), Gaps = 62/308 (20%)

Query: 23  ARPSPRY-------KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 75
           +   PR        + +Y  GG    + LS ++ ++  +  W                  
Sbjct: 11  SGLVPRGSHAPKVGRLIYTAGG-YFRQSLSYLEAYNPSNGTWLR---------------- 53

Query: 76  LLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVME 125
               L  +    S       G  L  +GG       +     +   +  TN    C  M 
Sbjct: 54  ----LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM- 108

Query: 126 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAP 184
                 V R    V ++   +   GG        N V   + E   W  V     P    
Sbjct: 109 -----SVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLV----APMLTR 158

Query: 185 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 244
           R     A+     L   GG   +   N       + NEW        + T R+G     +
Sbjct: 159 RIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGAGVCVL 214

Query: 245 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV 304
               Y  GG D  +        ++    W+ +  +          L +   + +G   + 
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGIT--VHQG--RIY 266

Query: 305 AFGGYNGK 312
             GGY+G 
Sbjct: 267 VLGGYDGH 274

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 92.8 bits (231), Expect = 4e-21
 Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 31  KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SDH 86
            +Y VGGS      + V+ ++     W                     ++ PM       
Sbjct: 123 HIYAVGGSHGCIHHNSVERYEPERDEWH--------------------LVAPMLTRRIGV 162

Query: 87  CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSVTLVG 143
            +      L  +GG    +  +    +   E N   +   M         R G  V ++ 
Sbjct: 163 GVAVLNRLLYAVGGFDGTNRLNSAECY-YPERNEWRMITAM------NTIRSGAGVCVLH 215

Query: 144 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFG 202
           + +   GG D     LN V   D+ET TW  V     P    R      +H  R + V G
Sbjct: 216 NCIYAAGGYDGQ-DQLNSVERYDVETETWTFV----APMKHRRSALGITVHQGR-IYVLG 269

Query: 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 240
           G     F + +   D  T+ WS       + +GR+G  
Sbjct: 270 GYDGHTFLDSVECYDPDTDTWS---EVTRMTSGRSGVG 304

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 49/302 (16%), Positives = 84/302 (27%), Gaps = 65/302 (21%)

Query: 13  DLWVTLPVSGARPSPRY--------KKLYIVGGSRNGR----FLSDVQVFDLRSLAWSNL 60
             W+ L        PR           LY VGG  N        S +  ++  +  WS  
Sbjct: 49  GTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 105

Query: 61  RLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 116
                                PM    +   +      +  +GG +     + + R+ + 
Sbjct: 106 --------------------APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY-EP 144

Query: 117 ETN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 173
           E +   L   M         R G  V ++   L   GG D + +L N       E   W 
Sbjct: 145 ERDEWHLVAPM------LTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEW- 196

Query: 174 AVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 231
                        R      +  +  +   GG       N +   D++T  W+       
Sbjct: 197 ----RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAP 248

Query: 232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 291
           +   R+           Y++GG D +         +     WS +T +         G+ 
Sbjct: 249 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVG 304

Query: 292 VC 293
           V 
Sbjct: 305 VA 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  103 bits (258), Expect = 1e-24
 Identities = 45/300 (15%), Positives = 88/300 (29%), Gaps = 60/300 (20%)

Query: 24  RPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM 83
           R      ++ + GGS+        + F+ +  +W+++                       
Sbjct: 7   RRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTDI--------------------RCP 42

Query: 84  ----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGG 136
                D   V W   + ILGG          +   ++  +              P  R  
Sbjct: 43  FEKRRDAACVFWDNVVYILGGSQLFPIKR--MDCYNVVKDSWYSKLGP------PTPRDS 94

Query: 137 HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHAN 195
            +      ++   GG +     L      D  T +W             R  H      N
Sbjct: 95  LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK----PSMLTQRCSHGMVEA-N 149

Query: 196 RYLIVFGGC----SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV 251
             + V GG           N   V D  T  W++      ++  R  H  + + +  + V
Sbjct: 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKNHGLVFVKDKIFAV 206

Query: 252 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 311
           GG +   G       ++    W +++      P+  +G++V  A +     +    G+ G
Sbjct: 207 GGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGS--IVYVLAGFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 43/245 (17%), Positives = 74/245 (30%), Gaps = 53/245 (21%)

Query: 31  KLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SD 85
           K+Y  GGS  G   L   + +D R+ +W                       P M      
Sbjct: 103 KIYTSGGSEVGNSALYLFECYDTRTESWH--------------------TKPSMLTQRCS 142

Query: 86  HCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVMETSGKVPVARGGHSV 139
           H MV+    + + GG    +    ++      D  T        M        AR  H +
Sbjct: 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM------IEARKNHGL 196

Query: 140 TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYL 198
             V  ++   GG++     L++V + D++   W  V    +P P        A   +  +
Sbjct: 197 VFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMV----SPMPWKGVTVKCAAVGSI-V 250

Query: 199 IVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 258
            V  G         +   + +T++W        +         I +        G   N 
Sbjct: 251 YVLAGFQGVGRLGHILEYNTETDKWV---ANSKVRAFPVTSCLICV----VDTCGA--NE 301

Query: 259 GCQET 263
              ET
Sbjct: 302 ETLET 306

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  101 bits (254), Expect = 3e-24
 Identities = 52/308 (16%), Positives = 91/308 (29%), Gaps = 57/308 (18%)

Query: 24  RPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM 83
           R      KL +V G +  + +  V+ +D +   W                      +  +
Sbjct: 9   RTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQ--------------------VAEL 48

Query: 84  ----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGG 136
                   MV     +  +GG         +  + D   +       M         R  
Sbjct: 49  PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY-DPVKDQWTSVANM------RDRRST 101

Query: 137 HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHAN 195
               ++   L   GG D S   L+ V   ++++  W  V     P    R      +   
Sbjct: 102 LGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHV----APMNTRRSSVGVGVV-G 155

Query: 196 RYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG 253
             L   GG   +     + +   +  TNEW+      ++ T R+G     ++   Y VGG
Sbjct: 156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSGAGVGVLNNLLYAVGG 212

Query: 254 GDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVAFGGYNG- 311
            D     +   V + T  AW  +  +   R        +     + G   L   GG +G 
Sbjct: 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-------NAGVCAVNG--LLYVVGGDDGS 263

Query: 312 KYNNEVFV 319
                V  
Sbjct: 264 CNLASVEY 271

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 92.7 bits (231), Expect = 4e-21
 Identities = 55/284 (19%), Positives = 89/284 (31%), Gaps = 57/284 (20%)

Query: 13  DLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 64
           + W  +      PS R +         ++ VGG      +  V  +D     W++     
Sbjct: 40  ERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS----- 91

Query: 65  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 119
                          +  M    S          L  +GG    +  S +  + ++++N 
Sbjct: 92  ---------------VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAY-NIKSNE 135

Query: 120 --LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVE 176
                 M         R    V +VG  L   GG D  SR+ L+ V   +  T  W    
Sbjct: 136 WFHVAPM------NTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW---- 185

Query: 177 VTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 234
            T        R      +  N  L   GG    +    + V D  TN W Q     D+  
Sbjct: 186 -TYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ---VADMNM 240

Query: 235 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278
            R       ++   Y+VGG D +         N T   W++++S
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS 284

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 243
            R      ++  + ++V GG +       +   D +   W Q     +L + R     + 
Sbjct: 4   VRTRLRTPMNLPKLMVVVGGQAPKA-IRSVECYDFKEERWHQ---VAELPSRRCRAGMVY 59

Query: 244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS-VKGRNPLASEGLSVCSAIIEGEHH 302
           +    + VGG + +   +     +  K  W+ + +    R+       ++ +A++ G   
Sbjct: 60  MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRS-------TLGAAVLNG--L 110

Query: 303 LVAFGGYNG 311
           L A GG++G
Sbjct: 111 LYAVGGFDG 119

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 35/124 (28%)

Query: 31  KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----SDH 86
            LY VGG         V+V+D  + AW                      +  M     + 
Sbjct: 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWR--------------------QVADMNMCRRNA 245

Query: 87  CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN----LCGVMETSGKVPVARGGHSVTLV 142
            +      L ++GG     + + +  + +  T+    +   M         R    VT++
Sbjct: 246 GVCAVNGLLYVVGGDDGSCNLASVEYY-NPTTDKWTVVSSCM------STGRSYAGVTVI 298

Query: 143 GSRL 146
             RL
Sbjct: 299 DKRL 302

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 96.2 bits (239), Expect = 6e-22
 Identities = 43/293 (14%), Positives = 78/293 (26%), Gaps = 50/293 (17%)

Query: 80  LP-PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHS 138
            P P            + I  G     S       +D +         +      R   +
Sbjct: 6   TPVPFKSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPRDQAT 60

Query: 139 VTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 194
              +   L +FGG     +   ++ NDVH  + +T +W  V++    P     H   +H 
Sbjct: 61  SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW--VKLMSHAPMGMAGHVTFVHN 118

Query: 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP---------------------------- 226
            +   V GG + +IF      L+    + +                              
Sbjct: 119 GK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177

Query: 227 ---EIKGDL-VTGRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNMTKLAWSILTSVKG 281
                 G+    G AG A +   +  +++ G             L+ T            
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237

Query: 282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ 334
            +P    G     +       L+  GG   K + E +            K + 
Sbjct: 238 SSPDGVAGGFAGIS----NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS 286

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 93.1 bits (231), Expect = 6e-21
 Identities = 40/289 (13%), Positives = 72/289 (24%), Gaps = 71/289 (24%)

Query: 31  KLYIVGGSRNG-----RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD 85
            LY+ GG         +  +DV  ++ ++ +W  L                      M+ 
Sbjct: 67  NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP---------------MGMAG 111

Query: 86  HCMVKWGTKLLILGGHYKKSSDSMIVRF--IDLETNLCGVMETS---------------- 127
           H       K  + GG  +   +           ++     +                   
Sbjct: 112 HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171

Query: 128 ------------GKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 174
                       G+ P     G +V   G +  +  GE +     + V  LD        
Sbjct: 172 SFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW 231

Query: 175 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS-----------------IFFNDLHVLD 217
            ++             A  +N  LI  GG                            +  
Sbjct: 232 NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL 291

Query: 218 LQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 266
               +W +    G+L  GRA    +  + +  I+GG           VL
Sbjct: 292 WHNGKWDK---SGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 21/166 (12%), Positives = 41/166 (24%), Gaps = 26/166 (15%)

Query: 31  KLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV 89
           K +++ G ++ G     V   D         +L      D             ++     
Sbjct: 202 KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD------------GVAGGFAG 249

Query: 90  KWGTKLLILGGHYKKSSDSMIVR--------FIDLETNLCGVMETS-----GKVPVARGG 136
                L+  GG   K S                   +    +         G++   R  
Sbjct: 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY 309

Query: 137 HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 182
                  + L+I GGE    K + D   + ++        +     
Sbjct: 310 GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 41/306 (13%), Positives = 83/306 (27%), Gaps = 69/306 (22%)

Query: 31  KLYIVGGSRNGR------FLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM- 83
           ++++ GG             +    FD     W  +                    PP+ 
Sbjct: 47  QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM--------------------PPLP 86

Query: 84  ---SDHCMVKWGTKLLILGGHYKKSSDSMI--VRFIDLETN---LCGVMETSGKVPVARG 135
                  + +    + ++GG   K  +  +  V   D  +        +      P    
Sbjct: 87  SPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL------PYVVY 140

Query: 136 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA 194
           GH+V      + + GG+   RK LN +   D +   W  +     P    R    A +H 
Sbjct: 141 GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL----APMQTARSLFGATVH- 195

Query: 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 254
           +  +IV  G + +   +   V  +  N+W+           R+  + +++    Y +GG 
Sbjct: 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP---FEAFPQERSSLSLVSLVGTLYAIGGF 252

Query: 255 DNNNGCQETI---------VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 305
                    +           N  +  W  +          +               L  
Sbjct: 253 ATLETESGELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGATFL----PVRLNV 302

Query: 306 FGGYNG 311
                 
Sbjct: 303 LRLTKM 308

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 32/210 (15%)

Query: 115 DLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED-----RSRKLLNDVHFLDLET 169
           D   N C     S    V +   S+    +++ + GG       +   +       D   
Sbjct: 19  DPAANECYCASLS--SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76

Query: 170 MTWDAVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHS---IFFNDLHVLDLQTNEWS 224
             W        PP  +PR         N  + V GG          + +   D  + +W 
Sbjct: 77  SEW-----LGMPPLPSPRCLFGLGEALNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWG 130

Query: 225 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI-VLNMTKLAWSILTSVK-GR 282
           +      L     GH  ++  +  Y++GG  ++  C   + V +  K  W  L  ++  R
Sbjct: 131 E---SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR 187

Query: 283 NPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
           +          + + +G   ++   G    
Sbjct: 188 S-------LFGATVHDG--RIIVAAGVTDT 208

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 51/259 (19%)

Query: 31  KLYIVGG------SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM- 83
           ++Y+VGG      +++    S     D  S  W  L                    PP+ 
Sbjct: 58  QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL--------------------PPLP 97

Query: 84  ---SDHCMVKWGTKLLILGGHYKKSSDSM-IV-RFIDLETN---LCGVMETSGKVPVARG 135
                  + +   K+ ++ G   ++  S+  V  + D           +      P+   
Sbjct: 98  SARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY-DPVAAKWSEVKNL------PIKVY 150

Query: 136 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA 194
           GH+V      +   GG+   +K  N V   + +   W  +     P   PR     A+H 
Sbjct: 151 GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL----APMKTPRSMFGVAIH- 205

Query: 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 254
              +++ GG +       +   DL+TN+W       +    R+  + +++  + Y +GG 
Sbjct: 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV---MTEFPQERSSISLVSLAGSLYAIGGF 262

Query: 255 DNNNGCQETIVLNMTKLAW 273
                  +          W
Sbjct: 263 AMIQLESKEFAPTEVNDIW 281

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 60/231 (25%)

Query: 31  KLYIVGGS--RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM----S 84
           K+Y+V G   +    L  V  +D  +  WS                     +  +     
Sbjct: 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWS--------------------EVKNLPIKVY 150

Query: 85  DHCMVKWGTKLLILGGHY--KKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSV 139
            H ++     +  LGG    KK ++ +   + + +         M         R    V
Sbjct: 151 GHNVISHNGMIYCLGGKTDDKKCTNRVF-IY-NPKKGDWKDLAPM------KTPRSMFGV 202

Query: 140 TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYL 198
            +   +++I GG      L   V   DL+T  W+ +    T  P  R   S    A   L
Sbjct: 203 AIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVM----TEFPQERSSISLVSLAGS-L 256

Query: 199 IVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 240
              GG +              ND+   +    EW+       L   R    
Sbjct: 257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASG 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 39/230 (16%)

Query: 94  KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 153
            +L++         +  V + D   N C +   +    + R   S+    +++ + GG  
Sbjct: 17  LILLVND-------TAAVAY-DPMENECYLTALA--EQIPRNHSSIVTQQNQVYVVGGLY 66

Query: 154 -----RSRKLLNDVHFLDLETMTWDAVEVTQTPP--APRYDHSAALHANRYLIVFGGC-- 204
                + + L +    LD  +  W        PP  + R         ++ + V  G   
Sbjct: 67  VDEENKDQPLQSYFFQLDNVSSEW-----VGLPPLPSARCLFGLGEVDDK-IYVVAGKDL 120

Query: 205 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 264
                 + +   D    +WS+     +L     GH  I+ +   Y +GG  ++  C   +
Sbjct: 121 QTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177

Query: 265 -VLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
            + N  K  W  L  +K  R+           AI +G   +V  GG    
Sbjct: 178 FIYNPKKGDWKDLAPMKTPRS-------MFGVAIHKG--KIVIAGGVTED 218

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 198 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 257
           +++    +   +       D   NE             R   + +T     Y+VGG   +
Sbjct: 18  ILLVNDTAAVAY-------DPMENECYLT--ALAEQIPRNHSSIVTQQNQVYVVGGLYVD 68

Query: 258 NGCQETIV------LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 311
              ++  +      L+     W  L       PL S         ++    +    G + 
Sbjct: 69  EENKDQPLQSYFFQLDNVSSEWVGLP------PLPSARCLFGLGEVDD--KIYVVAGKDL 120

Query: 312 KYNN-----EVF 318
           +          +
Sbjct: 121 QTEASLDSVLCY 132

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 53.0 bits (126), Expect = 1e-07
 Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 35/254 (13%)

Query: 31  KLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV 89
           +++ +GGS +G  F  + +V+   S  W++L        +    +    +    +   + 
Sbjct: 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL---PNAKVNPMLTADKQGLYRSDNHAWLF 355

Query: 90  KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS----- 144
            W    +   G     S +M   +    T+  G ++++GK    RG     + G+     
Sbjct: 356 GWKKGSVFQAG----PSTAMNWYY----TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 407

Query: 145 ----RLIIFGG--EDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDHSAALHANR 196
               +++ FGG  + +      + H + L         V  +      R  H++ +  + 
Sbjct: 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG 467

Query: 197 YLIVFGGCSHSIFFNDLHVL------DLQTNEWSQPEIKGDLVTGRAGHAGITIDEN-WY 249
              + GG    I F D   +        + + + +   +      R  H+   +  +   
Sbjct: 468 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIVRVYHSISLLLPDGRV 524

Query: 250 IVGGGDNNNGCQET 263
             GGG     C   
Sbjct: 525 FNGGGGLCGDCTTN 538

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 14/142 (9%)

Query: 131 PVARGGHS-VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 189
            VARG  S  T+   R+   GG         +       + TW ++   +  P    D  
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343

Query: 190 AALHANRYLIVFGGCSHSIFF---NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT--- 243
               ++ +  +FG    S+F    +        +         G   + R          
Sbjct: 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGN 402

Query: 244 ------IDENWYIVGGGDNNNG 259
                 +       GG  +   
Sbjct: 403 AVMYDAVKGKILTFGGSPDYQD 424

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 446
           ++    +  S++++ + N   +E+   + ++ S+  K+   +Q  L AER         I
Sbjct: 33  RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92

Query: 447 AELQKMLESSQTIENEVQILRQQKSAFEQEMERA 480
            +LQ  +    +++ EV+ L+      E E + A
Sbjct: 93  GDLQARI---TSLQEEVKHLKHNLEKVEGERKEA 123

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 393 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 452
           L+  L E         +    +  +H+E+SK +S ++      + R   LE   ++  K 
Sbjct: 11  LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70

Query: 453 LESSQTIENEVQILRQQKSAFEQEMERATS 482
               Q I    +  R   S    +++   +
Sbjct: 71  YYQLQAILEAERRDRGHDSEMIGDLQARIT 100

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 17/105 (16%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
           ++++     ++  K   +    +++      R      +    +L   ++S+Q ++   +
Sbjct: 51  RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110

Query: 437 SRCFKLEAQIAELQKMLESSQTIENEVQI-LRQQKSAFEQEMERA 480
               K+E +  E Q ML  S+  +N ++I L  +  + +Q +E+ 
Sbjct: 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 352  AKSEKLDIPKTLSSKFAGIGNDLSEK--DVRTDIDAIKEDKRVLELSLTEVRTENSRFRE 409
             + EK      L +K   + ++L  +          +++ KR LE   +++  + +  + 
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 410  KIDEVNSTHSELSKELSSVQGQLVAERSRCFK-------LEAQIAELQKMLESSQT---- 458
            +I E+ +  ++  +EL +   +L  E S+          LE+ I++LQ+ LES +     
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 459  IENEVQILRQQKSAFEQEMERATS 482
             E + + L ++  A + E+E    
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 387  KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------- 439
            + +K   +  + ++  +     ++ +++      L + +S +   L  E  +        
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 440  FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 482
             K E+ I+EL+  L+     E   Q L + K   E E      
Sbjct: 1035 NKHESMISELEVRLKKE---EKSRQELEKIKRKLEGESSDLHE 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 377  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ----- 431
             D+   I  ++     L+  L +   E      ++++  S  +   K++  ++       
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 432  --LVAERSRCFKLEAQ-------IAELQKMLESSQTIENEVQILRQQKSAFEQE 476
              L +E++   K E Q       +  L+  LE +       Q LR      + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
           +D     + +     ++E  L            K  E+      ++  L S++ Q     
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS 215

Query: 437 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERA 480
            +  K E +I  L   L+ ++T     E  V  L +     E E+   
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 442
           +DAIK+  ++L+L                        +L  EL S+Q +L A      K 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 443 EAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA 480
              + + Q+ LE ++      E +V  L ++   FE+E++RA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 14/110 (12%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
             ++  + A +++      +L + + +     +K  +  +  + L++ +   + +L   +
Sbjct: 44  VSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103

Query: 437 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERATS 482
            R      ++ E +K  + S+     IE+  Q   ++    E +++ A  
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 153

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 377  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 436
            K     ++  K+    LE  + +        + KIDE N  +  L +++++++     E 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQ-------LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 437  SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 482
                KL + +  L+   E ++   N V  L+++ +   +E+ +  +
Sbjct: 963  E---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.71
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.7
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.61
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.53
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.34
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.23
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.09
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.08
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.05
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.03
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.02
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.01
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.98
3jro_A	753	Fusion protein of protein transport protein SEC13	96.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.76
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.67
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.6
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.37
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.36
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.34
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.34
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.32
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.23
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.17
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.14
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.13
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.11
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.11
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.02
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.98
3jro_A	753	Fusion protein of protein transport protein SEC13	95.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.85
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.81
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.8
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.8
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.75
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.72
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.67
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.55
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.54
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.53
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.53
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.53
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.52
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.51
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.5
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.49
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.48
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.42
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.4
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.38
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.38
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.32
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.3
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.19
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.19
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.16
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.14
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.12
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.1
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.03
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.96
3ott_A	758	Two-component system sensor histidine kinase; beta	94.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.83
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.82
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.78
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.76
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.75
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	94.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.67
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.63
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.46
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.46
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.44
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	94.44
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.44
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.43
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	94.38
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.24
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	94.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.19
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.18
2pm7_B	297	Protein transport protein SEC13, protein transport	94.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.17
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	94.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.03
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.02
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	94.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.97
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	93.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.82
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.81
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.74
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.74
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	93.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	93.67
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.65
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.52
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	93.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.51
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.48
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.44
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.34
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	93.33
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.26
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.21
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	93.2
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	93.16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.13
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	92.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	92.88
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.8
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.79
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.66
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.65
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.46
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.43
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.35
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.28
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.27
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.26
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.23
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	92.06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	92.04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	91.94
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	91.85
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.84
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.8
3bas_A	89	Myosin heavy chain, striated muscle/general contro	91.74
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.74
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	91.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	91.71
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.7
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.69
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	91.57
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	91.53
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	91.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	91.48
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	91.4
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	91.39
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	91.31
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	91.1
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	91.03
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	90.95
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	90.89
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	90.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	90.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	90.68
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	90.63
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.6
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	90.59
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	90.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.48
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.44
2pm7_B	297	Protein transport protein SEC13, protein transport	90.34
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	90.17
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.05
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	89.93
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.93
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.91
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	89.59
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	89.55
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	89.51
3vp9_A	92	General transcriptional corepressor TUP1; four hel	89.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	89.31
3ibp_A	302	Chromosome partition protein MUKB; structural main	89.16
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.15
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	88.92
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	88.83
3lay_A	175	Zinc resistance-associated protein; salmonella typ	88.78
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.75
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	88.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	88.61
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	88.54
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	88.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	88.2
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	88.0
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.75
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	87.61
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	87.38
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	87.04
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	86.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	86.97
3ott_A	758	Two-component system sensor histidine kinase; beta	86.82
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	86.8
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	86.63
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	86.61
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	86.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	86.21
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	86.11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	85.92
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.63
3k29_A	169	Putative uncharacterized protein; YSCO, type III s	85.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	85.38
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	85.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	85.25
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	85.18
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	85.01
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	85.0
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	84.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	84.93
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	84.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	84.79
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	84.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	84.72
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.6
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	84.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	84.08
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	84.03
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	82.97
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.57
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	82.21
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	82.18
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	82.0
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	81.27
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	81.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	81.04
2qyw_A	102	Vesicle transport through interaction with T-SNAR	80.76
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	80.5
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	80.46
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	80.42
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	80.26
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	80.12
1vcs_A	102	Vesicle transport through interaction with T- snar	80.1

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.4e-44  Score=346.59  Aligned_cols=277  Identities=14%  Similarity=0.258  Sum_probs=239.6

Q ss_pred             ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCc
Q 010847           30 KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        30 ~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~  109 (499)
                      +.||+|||...   ++++++||+.+++|..++.+                |.+|.+|++++++++||++||..  ....+
T Consensus        12 ~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~   70 (306)
T 3ii7_A           12 DYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP----------------FEKRRDAACVFWDNVVYILGGSQ--LFPIK   70 (306)
T ss_dssp             CEEEEEECCSS---TTSEEEEETTTTEEEECCCC----------------SCCCBSCEEEEETTEEEEECCBS--SSBCC
T ss_pred             ceEEEEeCCCC---CceEEEecCCCCCEecCCCC----------------CcccceeEEEEECCEEEEEeCCC--CCCcc
Confidence            38999999755   78999999999999999766                45899999999999999999987  33478


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      ++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+......+++++||+.+++|+.+.   .+|.+|..|+
T Consensus        71 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~  144 (306)
T 3ii7_A           71 RMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHG  144 (306)
T ss_dssp             EEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred             eEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeE
Confidence            8999999999999997   899999999999999999999999755557899999999999999985   5788999999


Q ss_pred             EEEEcCcEEEEEcCCCCCCC----CCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEE
Q 010847          190 AALHANRYLIVFGGCSHSIF----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  265 (499)
                      ++.+ +++||+|||......    ++++++||+.+++|+.+   .++|.+|..|+++.++++|||+||.+.....+++++
T Consensus       145 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  220 (306)
T 3ii7_A          145 MVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEY  220 (306)
T ss_dssp             EEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEE
T ss_pred             EEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC---CCccchhhcceEEEECCEEEEEeCCCCCCCCceEEE
Confidence            9988 556999999876655    89999999999999998   578999999999999999999999877766789999


Q ss_pred             EECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCcccCCchhhhhhhh
Q 010847          266 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS  344 (499)
Q Consensus       266 ~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  344 (499)
                      ||+.+++|+.++.+|    .++.+++++  +++  +.|||+||.++. ..+++++||+..++|..++.++.++..++++.
T Consensus       221 yd~~~~~W~~~~~~p----~~r~~~~~~--~~~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  292 (306)
T 3ii7_A          221 YDIKLNEWKMVSPMP----WKGVTVKCA--AVG--SIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC  292 (306)
T ss_dssp             EETTTTEEEECCCCS----CCBSCCEEE--EET--TEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEE
T ss_pred             eeCCCCcEEECCCCC----CCccceeEE--EEC--CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEE
Confidence            999999999997654    345555443  333  479999998754 67899999999999999998888877665554


Q ss_pred             h
Q 010847          345 V  345 (499)
Q Consensus       345 ~  345 (499)
                      +
T Consensus       293 ~  293 (306)
T 3ii7_A          293 V  293 (306)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.3e-44  Score=348.17  Aligned_cols=277  Identities=20%  Similarity=0.281  Sum_probs=239.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccC---CCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY---KKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~---~~~~~  107 (499)
                      +||+|||. ....++++++||+.+++|..++.+                |.+|.+|++++++++||++||..   .....
T Consensus        26 ~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~   88 (308)
T 1zgk_A           26 LIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD   88 (308)
T ss_dssp             CEEEECCB-SSSBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred             EEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC----------------CcccccceEEEECCEEEEECCCcCCCCCCee
Confidence            89999998 566789999999999999999765                56899999999999999999983   22223


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+... ..+++++||+.+++|+.+.   .+|.+|..
T Consensus        89 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~  161 (308)
T 1zgk_A           89 SSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIG  161 (308)
T ss_dssp             CCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred             cceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECC---CCCccccc
Confidence            678999999999999997   8999999999999999999999987644 5789999999999999986   57889999


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      |+++.+ ++.||+|||.+....++++++||+.+++|+.+   .++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus       162 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          162 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEe
Confidence            999998 55699999998777799999999999999997   56899999999999999999999988776688999999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCcccCCchhhhhhh
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAA  343 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  343 (499)
                      +.+++|+.++.++    .+|.+++++  +++  +.|||+||.++. ..+++++||+..++|...+.+|.++..++++
T Consensus       238 ~~~~~W~~~~~~p----~~r~~~~~~--~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~  306 (308)
T 1zgk_A          238 VETETWTFVAPMK----HRRSALGIT--VHQ--GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA  306 (308)
T ss_dssp             TTTTEEEECCCCS----SCCBSCEEE--EET--TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred             CCCCcEEECCCCC----CCccceEEE--EEC--CEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeE
Confidence            9999999987553    345555433  343  479999998754 5789999999999999999998888766554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-43  Score=340.26  Aligned_cols=285  Identities=19%  Similarity=0.278  Sum_probs=241.0

Q ss_pred             CCCcccc---eEEEEcC-CCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEc
Q 010847           24 RPSPRYK---KLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG   99 (499)
Q Consensus        24 ~p~~r~~---~l~~~GG-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~G   99 (499)
                      .+.||..   .||++|| ..+...++++++||+.+++|..++.+                |.+|.+|+++.++++||++|
T Consensus         6 ~~~pr~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~l~v~G   69 (301)
T 2vpj_A            6 RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI----------------TRKRRYVASVSLHDRIYVIG   69 (301)
T ss_dssp             -------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEEC
T ss_pred             cccccccCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC----------------ChhhccccEEEECCEEEEEc
Confidence            3455554   9999999 66677889999999999999998865                45899999999999999999


Q ss_pred             ccCCCCCCCceEEEEECCCCc---EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847          100 GHYKKSSDSMIVRFIDLETNL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  176 (499)
Q Consensus       100 G~~~~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  176 (499)
                      |..... ..+++++||+.+++   |+.++   ++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.+.
T Consensus        70 G~~~~~-~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~  144 (301)
T 2vpj_A           70 GYDGRS-RLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG  144 (301)
T ss_dssp             CBCSSC-BCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCc-cCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC
Confidence            987543 37789999999999   99997   8999999999999999999999988654 4889999999999999997


Q ss_pred             ecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCC
Q 010847          177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  256 (499)
Q Consensus       177 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  256 (499)
                      +   +|.+|..|+++.+ +++||++||.+....++++++||+.+++|+.+   +++|.+|..|+++.++++|||+||.+.
T Consensus       145 ~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          145 D---MQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLNDHIYVVGGFDG  217 (301)
T ss_dssp             E---CSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             C---CCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCcccccceEEEECCEEEEEeCCCC
Confidence            4   6789999999998 55699999998777899999999999999998   578999999999999999999999887


Q ss_pred             CCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCcccCC
Q 010847          257 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQS  335 (499)
Q Consensus       257 ~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~~~~~  335 (499)
                      ....+++++||+.+++|+.++.+|    .++.++++  ++++  +.||++||.++. ..+++++||+..++|..++.+|.
T Consensus       218 ~~~~~~v~~yd~~~~~W~~~~~~p----~~r~~~~~--~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  289 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSWTTVTSMT----TPRCYVGA--TVLR--GRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGT  289 (301)
T ss_dssp             SSBCCCEEEEETTTTEEEEECCCS----SCCBSCEE--EEET--TEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEE
T ss_pred             CcccceEEEEeCCCCcEEECCCCC----CcccceeE--EEEC--CEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCc
Confidence            666889999999999999997653    34555543  3344  469999998754 45789999999999999988888


Q ss_pred             chhhhhhhh
Q 010847          336 PAAAAAAAS  344 (499)
Q Consensus       336 ~~~~~~~~~  344 (499)
                      ++..++++.
T Consensus       290 ~r~~~~~~~  298 (301)
T 2vpj_A          290 QRCDAGVCV  298 (301)
T ss_dssp             EEESCEEEE
T ss_pred             ccccceEEE
Confidence            877665544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.8e-43  Score=337.92  Aligned_cols=278  Identities=18%  Similarity=0.247  Sum_probs=237.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .||++||... ..++++++||+.+++|..++.+                |.+|.+|+++.++++||++||...... .++
T Consensus        17 ~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~   78 (302)
T 2xn4_A           17 LMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL----------------PSRRCRAGMVYMAGLVFAVGGFNGSLR-VRT   78 (302)
T ss_dssp             EEEEECCBSS-SBCCCEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEESCBCSSSB-CCC
T ss_pred             EEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC----------------CcccccceEEEECCEEEEEeCcCCCcc-ccc
Confidence            8999999764 4678999999999999999765                458999999999999999999876543 678


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      +++||+.+++|+.++   ++|.+|.+|++++++++||++||.+... ..+++++||+.+++|+.+.   .+|.+|..|++
T Consensus        79 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~  151 (302)
T 2xn4_A           79 VDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGV  151 (302)
T ss_dssp             EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred             eEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceE
Confidence            999999999999998   8999999999999999999999987654 5789999999999999986   57889999999


Q ss_pred             EEEcCcEEEEEcCCCCC--CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEEC
Q 010847          191 ALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  268 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  268 (499)
                      +.+ +++||+|||.+..  ..++++++||+.+++|+.+   .++|.+|..|+++.++++|||+||.+.....+++++||+
T Consensus       152 ~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~  227 (302)
T 2xn4_A          152 GVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP  227 (302)
T ss_dssp             EEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEET
T ss_pred             EEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC---CCCccccccccEEEECCEEEEECCCCCCcccceEEEEeC
Confidence            998 4569999998654  3588999999999999998   578999999999999999999999877666789999999


Q ss_pred             CCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCc-ccCCchhhhhhhhh
Q 010847          269 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPK-IFQSPAAAAAAASV  345 (499)
Q Consensus       269 ~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~  345 (499)
                      .+++|+.++.++    .++.++++  +.++  +.|||+||.++. ..+++++||+..++|...+ .++.++..++++.+
T Consensus       228 ~~~~W~~~~~~~----~~r~~~~~--~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~  298 (302)
T 2xn4_A          228 TTNAWRQVADMN----MCRRNAGV--CAVN--GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI  298 (302)
T ss_dssp             TTTEEEEECCCS----SCCBSCEE--EEET--TEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEE
T ss_pred             CCCCEeeCCCCC----CccccCeE--EEEC--CEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEe
Confidence            999999998654    34545543  3344  479999998754 4688999999999999886 67877776665544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=328.66  Aligned_cols=258  Identities=15%  Similarity=0.186  Sum_probs=228.5

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   75 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~   75 (499)
                      +.|.|||.+++|..++   .+|.+|..        +||++||.. ...++++++||+.+++|+.++++            
T Consensus        25 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~------------   88 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP------------   88 (306)
T ss_dssp             SEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECC------------
T ss_pred             eEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCC------------
Confidence            5689999999999998   67888887        999999987 67789999999999999999876            


Q ss_pred             CCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847           76 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS  155 (499)
Q Consensus        76 ~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~  155 (499)
                          |.+|.+|++++++++||++||.+......+++++||+.+++|+.++   ++|.+|.+|++++++++||++||....
T Consensus        89 ----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~  161 (306)
T 3ii7_A           89 ----PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGN  161 (306)
T ss_dssp             ----SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESC
T ss_pred             ----CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCC
Confidence                4689999999999999999998744445788999999999999997   899999999999999999999998765


Q ss_pred             CC---ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCC
Q 010847          156 RK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  232 (499)
Q Consensus       156 ~~---~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  232 (499)
                      ..   ..+++++||+.+++|+.+.   .+|.+|..|+++.+ +++||++||.+....++++++||+.+++|+.+   +++
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~  234 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SPM  234 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC---CCC
T ss_pred             CCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC---CCC
Confidence            43   2889999999999999997   57889999999999 55699999988777789999999999999998   578


Q ss_pred             CCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEE
Q 010847          233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA  295 (499)
Q Consensus       233 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~  295 (499)
                      |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.++.++    .+|.+++++++
T Consensus       235 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~  293 (306)
T 3ii7_A          235 PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR----AFPVTSCLICV  293 (306)
T ss_dssp             SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE----CCSCTTCEEEE
T ss_pred             CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc----cccceeEEEEE
Confidence            999999999999999999999887777889999999999999997764    45666765544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=326.82  Aligned_cols=255  Identities=19%  Similarity=0.279  Sum_probs=224.8

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   75 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~   75 (499)
                      +.++|||..++|..++   .+|.+|..        +||++||..+...++++++||+.+++|+.++++            
T Consensus        31 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------------   95 (302)
T 2xn4_A           31 SVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM------------   95 (302)
T ss_dssp             CEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC------------
T ss_pred             cEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC------------
Confidence            4689999999999997   67888876        999999998777889999999999999999876            


Q ss_pred             CCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847           76 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS  155 (499)
Q Consensus        76 ~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~  155 (499)
                          |.+|.+|++++++++||++||...... .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+..
T Consensus        96 ----p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~  167 (302)
T 2xn4_A           96 ----RDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVA  167 (302)
T ss_dssp             ----SSCCBSCEEEEETTEEEEEEEECSSCE-EEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred             ----CccccceEEEEECCEEEEEcCCCCCcc-CceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCC
Confidence                458999999999999999999876543 678999999999999997   899999999999999999999998765


Q ss_pred             C-CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCC
Q 010847          156 R-KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT  234 (499)
Q Consensus       156 ~-~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~  234 (499)
                      . ...+++++||+.+++|+.+.   .+|.+|.+|+++.++ +.||+|||.++....+++++||+.+++|+.+   .++|.
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~~  240 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLN-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV---ADMNM  240 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBSSSSBCCCEEEEETTTTEEEEE---CCCSS
T ss_pred             CCccccEEEEEeCCCCcEEECC---CCccccccccEEEEC-CEEEEECCCCCCcccceEEEEeCCCCCEeeC---CCCCC
Confidence            3 35789999999999999996   578899999999884 5699999998777789999999999999998   57889


Q ss_pred             cCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec-cCCCCCCCCCCCCce
Q 010847          235 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT-SVKGRNPLASEGLSV  292 (499)
Q Consensus       235 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~-~~~~~~p~~~~~~~~  292 (499)
                      +|..|+++.++++|||+||.+.....+++++||+.+++|+.++ .+    |.+|.+|++
T Consensus       241 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~~r~~~~~  295 (302)
T 2xn4_A          241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCM----STGRSYAGV  295 (302)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCC----SSCCBSCEE
T ss_pred             ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCccc----CcccccceE
Confidence            9999999999999999999877666789999999999999986 33    344555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=334.44  Aligned_cols=273  Identities=18%  Similarity=0.255  Sum_probs=226.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccC-----CCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY-----KKS  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~-----~~~  105 (499)
                      .||++||       +++++|||.+++|.. ++++              .|.+|.+|++++++++||++||..     ...
T Consensus         6 ~l~~~GG-------~~~~~yd~~~~~W~~-~~~~--------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~   63 (315)
T 4asc_A            6 LIFMISE-------EGAVAYDPAANECYC-ASLS--------------SQVPKNHVSLVTKENQVFVAGGLFYNEDNKED   63 (315)
T ss_dssp             EEEEEET-------TEEEEEETTTTEEEE-EECC--------------CCSCSSEEEEECTTCCEEEEEEEEECSSCSSS
T ss_pred             EEEEEcC-------CceEEECCCCCeEec-CCCC--------------CCCCccceEEEEECCEEEEEcCcccCCCCCcc
Confidence            6899999       579999999999987 4432              256899999999999999999963     112


Q ss_pred             CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCC--CCCccCcEEEEECCCCeeEEeeecCCCCC
Q 010847          106 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR--SRKLLNDVHFLDLETMTWDAVEVTQTPPA  183 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~p~  183 (499)
                      ...+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.+.  .....+++++||+.+++|+.+.   .+|.
T Consensus        64 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~  137 (315)
T 4asc_A           64 PMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPY  137 (315)
T ss_dssp             CEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSS
T ss_pred             ccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCC
Confidence            23456999999999999997   89999999999999999999999752  3446899999999999999986   5788


Q ss_pred             CCccceEEEEcCcEEEEEcCC-CCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcce
Q 010847          184 PRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~  262 (499)
                      +|.+|+++.+++ +||+|||. .....++++++||+.+++|+.+   +++|.+|..|+++.++++|||+||.+.....++
T Consensus       138 ~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  213 (315)
T 4asc_A          138 VVYGHTVLSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL---APMQTARSLFGATVHDGRIIVAAGVTDTGLTSS  213 (315)
T ss_dssp             CCBSCEEEEETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEEEEECSSSEEEE
T ss_pred             cccceeEEEECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEEC---CCCCCchhceEEEEECCEEEEEeccCCCCccce
Confidence            999999999855 59999998 5567789999999999999997   578999999999999999999999887767889


Q ss_pred             EEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC----------CCCceEEEEECCCCCCCCCcc
Q 010847          263 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI  332 (499)
Q Consensus       263 ~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~~~~~~W~~~~~  332 (499)
                      +++||+.+++|+.++.+|    .+|.+++++  +++  +.|||+||.++          ...+++++||+..++|..+  
T Consensus       214 ~~~yd~~~~~W~~~~~~p----~~r~~~~~~--~~~--~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--  283 (315)
T 4asc_A          214 AEVYSITDNKWAPFEAFP----QERSSLSLV--SLV--GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--  283 (315)
T ss_dssp             EEEEETTTTEEEEECCCS----SCCBSCEEE--EET--TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--
T ss_pred             EEEEECCCCeEEECCCCC----CcccceeEE--EEC--CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--
Confidence            999999999999997653    445555443  344  37999999853          2467899999999999987  


Q ss_pred             cCCchhhhhhhhh
Q 010847          333 FQSPAAAAAAASV  345 (499)
Q Consensus       333 ~~~~~~~~~~~~~  345 (499)
                      .+.|+..++++.+
T Consensus       284 ~~~~r~~~~~~~~  296 (315)
T 4asc_A          284 LREIAYAAGATFL  296 (315)
T ss_dssp             ESCSSCCSSCEEE
T ss_pred             ccCCcCccceEEe
Confidence            5555555544443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.6e-41  Score=328.17  Aligned_cols=255  Identities=18%  Similarity=0.228  Sum_probs=225.8

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCC----CCCcccCcEEEEEcCCCceEEeeeCcccccCcc
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGS----RNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   71 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~----~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~   71 (499)
                      +.|.|||.+++|..++   .+|.+|..        +||++||.    .+...++++++||+.+++|+.++++        
T Consensus        40 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--------  108 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--------  108 (308)
T ss_dssp             CEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--------
T ss_pred             eEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC--------
Confidence            4689999999999997   67888876        99999998    5566789999999999999999876        


Q ss_pred             ccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcC
Q 010847           72 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG  151 (499)
Q Consensus        72 ~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG  151 (499)
                              |.+|.+|++++++++||++||...... .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||
T Consensus       109 --------p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG  176 (308)
T 1zgk_A          109 --------SVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGG  176 (308)
T ss_dssp             --------SSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECC
T ss_pred             --------CcCccccEEEEECCEEEEEcCCCCCcc-cccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeC
Confidence                    458999999999999999999876443 678999999999999997   89999999999999999999999


Q ss_pred             cCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCC
Q 010847          152 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  231 (499)
Q Consensus       152 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  231 (499)
                      .+.... .+++++||+.+++|+.+.   .+|.+|..|+++.+ ++.||||||.+....++++++||+.+++|+.+   .+
T Consensus       177 ~~~~~~-~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~  248 (308)
T 1zgk_A          177 FDGTNR-LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV---AP  248 (308)
T ss_dssp             BCSSCB-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC---CC
T ss_pred             CCCCCc-CceEEEEeCCCCeEeeCC---CCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC---CC
Confidence            886653 889999999999999986   57889999999998 55699999998777789999999999999997   57


Q ss_pred             CCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceE
Q 010847          232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  293 (499)
Q Consensus       232 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~  293 (499)
                      +|.+|..|+++.++++|||+||.+.....+++++||+.+++|+.++.+|    .+|.+++++
T Consensus       249 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p----~~r~~~~~~  306 (308)
T 1zgk_A          249 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT----SGRSGVGVA  306 (308)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----SCCBSCEEE
T ss_pred             CCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC----CCcccceeE
Confidence            8999999999999999999999887767889999999999999997764    456555543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=8.7e-41  Score=321.94  Aligned_cols=255  Identities=19%  Similarity=0.297  Sum_probs=225.9

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcCCCc---eEEeeeCcccccCccc
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLA---WSNLRLETELDADKTE   72 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~~~~~~~   72 (499)
                      +.|.|||.+++|..++   .+|.+|..        +||++||..+...++++++||+.+++   |+.++++         
T Consensus        32 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~---------   99 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM---------   99 (301)
T ss_dssp             CEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC---------
T ss_pred             EEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC---------
Confidence            4689999999999998   57778876        99999999877788999999999999   9999776         


Q ss_pred             cCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCc
Q 010847           73 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGE  152 (499)
Q Consensus        73 ~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~  152 (499)
                             |.+|.+|+++.++++||++||...... .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||.
T Consensus       100 -------p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A          100 -------NVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             -------SSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCB
T ss_pred             -------CCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCC
Confidence                   458999999999999999999886544 788999999999999997   789999999999999999999998


Q ss_pred             CCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCC
Q 010847          153 DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  232 (499)
Q Consensus       153 ~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  232 (499)
                      +... ..+++++||+.+++|+.+.   .+|.+|..|+++.++ ++||++||.+.....+++++||+.+++|+.+   +++
T Consensus       169 ~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~  240 (301)
T 2vpj_A          169 DGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLN-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV---TSM  240 (301)
T ss_dssp             CSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEEE---CCC
T ss_pred             CCCc-ccceEEEEeCCCCcEEeCC---CCCcccccceEEEEC-CEEEEEeCCCCCcccceEEEEeCCCCcEEEC---CCC
Confidence            7654 5899999999999999996   578899999999984 5699999998777789999999999999998   578


Q ss_pred             CCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceE
Q 010847          233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  293 (499)
Q Consensus       233 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~  293 (499)
                      |.+|..|+++.++++|||+||.+.....+++++||+.+++|+.++.++    .+|.+++++
T Consensus       241 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~r~~~~~~  297 (301)
T 2vpj_A          241 TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG----TQRCDAGVC  297 (301)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE----EEEESCEEE
T ss_pred             CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC----cccccceEE
Confidence            999999999999999999999877766789999999999999997764    345555443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=329.68  Aligned_cols=267  Identities=15%  Similarity=0.198  Sum_probs=223.1

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC------CCcccCcEEEEEcCCCceEEeeeCcccccC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR------NGRFLSDVQVFDLRSLAWSNLRLETELDAD   69 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~------~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~   69 (499)
                      +.|+|||.+++|...+.  +.|.+|.+        +||++||..      .....+++++||+.+++|+.++++      
T Consensus        14 ~~~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~------   85 (315)
T 4asc_A           14 GAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL------   85 (315)
T ss_dssp             EEEEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB------
T ss_pred             ceEEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC------
Confidence            46899999999997432  33667776        999999962      123345699999999999998776      


Q ss_pred             ccccCCCCCCCCCccceeEEEECCEEEEEcccCC--CCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEE
Q 010847           70 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK--KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLI  147 (499)
Q Consensus        70 ~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~ly  147 (499)
                                |.+|.+|++++++++||++||...  .....+++++||+.+++|+.++   ++|.+|.+|++++++++||
T Consensus        86 ----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iy  152 (315)
T 4asc_A           86 ----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVY  152 (315)
T ss_dssp             ----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEE
T ss_pred             ----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEE
Confidence                      468999999999999999999753  2335788999999999999997   8999999999999999999


Q ss_pred             EEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecc
Q 010847          148 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       148 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                      ++||.+......+++++||+.+++|+.+.   .+|.+|..|+++.++ ++|||+||.+....++++++||+.+++|+.+ 
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-  227 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHD-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-  227 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEET-TEEEEEEEECSSSEEEEEEEEETTTTEEEEE-
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEEC-CEEEEEeccCCCCccceEEEEECCCCeEEEC-
Confidence            99999666667899999999999999987   578899999999984 4699999998777889999999999999998 


Q ss_pred             cCCCCCCcCcccEEEEECCEEEEEeCCCCC---------CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc
Q 010847          228 IKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  298 (499)
Q Consensus       228 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~  298 (499)
                        .++|.+|..|+++.++++|||+||.+..         ...+++++||+.+++|+.+.      |.+|.+++++++   
T Consensus       228 --~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~---  296 (315)
T 4asc_A          228 --EAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGATFL---  296 (315)
T ss_dssp             --CCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE------SCSSCCSSCEEE---
T ss_pred             --CCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc------cCCcCccceEEe---
Confidence              5689999999999999999999997531         23578999999999999983      334666665443   


Q ss_pred             CceEEEEEcC
Q 010847          299 GEHHLVAFGG  308 (499)
Q Consensus       299 ~~~~l~v~GG  308 (499)
                       ++.|+++..
T Consensus       297 -~~~l~v~~~  305 (315)
T 4asc_A          297 -PVRLNVLRL  305 (315)
T ss_dssp             -EEEECGGGS
T ss_pred             -CCEEEEEEe
Confidence             345776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=9.3e-41  Score=324.33  Aligned_cols=273  Identities=16%  Similarity=0.248  Sum_probs=225.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC-----
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-----  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~-----  105 (499)
                      .||++||.       ++++|||.+++|...+ ++              .|.+|.+|+++.++++||++||.....     
T Consensus        17 ~i~~~GG~-------~~~~yd~~~~~W~~~~-~~--------------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~   74 (318)
T 2woz_A           17 LILLVNDT-------AAVAYDPMENECYLTA-LA--------------EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQ   74 (318)
T ss_dssp             EEEEECSS-------EEEEEETTTTEEEEEE-EC--------------TTSCSSEEEEECSSSCEEEEESSCC-------
T ss_pred             hhhhcccc-------ceEEECCCCCceeccc-CC--------------ccCCccceEEEEECCEEEEECCcccCccccCC
Confidence            89999994       4899999999999843 22              246899999999999999999964211     


Q ss_pred             CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCC-CCCccCcEEEEECCCCeeEEeeecCCCCCC
Q 010847          106 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETMTWDAVEVTQTPPAP  184 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~  184 (499)
                      ...+++++||+.+++|..++   ++|.+|.+|++++++++||++||... .....+++++||+.+++|+.+.   .+|.+
T Consensus        75 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~  148 (318)
T 2woz_A           75 PLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIK  148 (318)
T ss_dssp             CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSC
T ss_pred             CccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCc
Confidence            12345999999999999997   89999999999999999999999863 3446889999999999999986   57889


Q ss_pred             CccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceE
Q 010847          185 RYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET  263 (499)
Q Consensus       185 r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~  263 (499)
                      |.+|+++.+ ++.||+|||.. ....++++++||+.+++|+.+   +++|.+|..|+++.++++|||+||.+.....+++
T Consensus       149 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  224 (318)
T 2woz_A          149 VYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASV  224 (318)
T ss_dssp             EESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             ccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC---CCCCCCcccceEEEECCEEEEEcCcCCCCccceE
Confidence            999999997 55699999974 445689999999999999998   5789999999999999999999998776667899


Q ss_pred             EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC----------CCCceEEEEECCCCCCCCCccc
Q 010847          264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKIF  333 (499)
Q Consensus       264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~~~~~~W~~~~~~  333 (499)
                      ++||+.+++|+.++.+|    .+|.++++  ++.+  +.||++||.+.          ...+++|+||+.+++|..+  +
T Consensus       225 ~~yd~~~~~W~~~~~~p----~~r~~~~~--~~~~--~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~  294 (318)
T 2woz_A          225 EAFDLKTNKWEVMTEFP----QERSSISL--VSLA--GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L  294 (318)
T ss_dssp             EEEETTTCCEEECCCCS----SCCBSCEE--EEET--TEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E
T ss_pred             EEEECCCCeEEECCCCC----CcccceEE--EEEC--CEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c
Confidence            99999999999997654    34555543  3344  47999999864          2468999999999999987  5


Q ss_pred             CCchhhhhhhhh
Q 010847          334 QSPAAAAAAASV  345 (499)
Q Consensus       334 ~~~~~~~~~~~~  345 (499)
                      +.++..++.+.+
T Consensus       295 ~~~r~~~~~~~~  306 (318)
T 2woz_A          295 KEIRYASGASCL  306 (318)
T ss_dssp             SCCGGGTTCEEE
T ss_pred             ccccccccceee
Confidence            666665554443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-40  Score=322.83  Aligned_cols=266  Identities=17%  Similarity=0.235  Sum_probs=221.2

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCCC------CcccCcEEEEEcCCCceEEeeeCcccccC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELDAD   69 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~~~~~~~   69 (499)
                      +.++|||.+++|...+.  +.|.+|..        +||++||...      ....+++++||+.+++|+.++++      
T Consensus        25 ~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~------   96 (318)
T 2woz_A           25 AAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL------   96 (318)
T ss_dssp             EEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB------
T ss_pred             ceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC------
Confidence            35899999999998553  33456665        9999999631      12234599999999999999776      


Q ss_pred             ccccCCCCCCCCCccceeEEEECCEEEEEcccCC-CCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 010847           70 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII  148 (499)
Q Consensus        70 ~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv  148 (499)
                                |.+|.+|++++++++||++||... .....+++++||+.+++|+.++   ++|.+|.+|++++++++||+
T Consensus        97 ----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv  163 (318)
T 2woz_A           97 ----------PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYC  163 (318)
T ss_dssp             ----------SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEE
T ss_pred             ----------CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEE
Confidence                      458999999999999999999863 2334688999999999999997   89999999999999999999


Q ss_pred             EcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847          149 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  228 (499)
Q Consensus       149 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  228 (499)
                      +||........+++++||+.+++|+.+.   .+|.+|..|+++.++ +.|||+||.+....++++++||+.+++|+.+  
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--  237 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHK-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVM--  237 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEET-TEEEEEEEEETTEEEEEEEEEETTTCCEEEC--
T ss_pred             EcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEEC-CEEEEEcCcCCCCccceEEEEECCCCeEEEC--
Confidence            9998766667899999999999999996   578899999999884 5699999988777788999999999999997  


Q ss_pred             CCCCCCcCcccEEEEECCEEEEEeCCCCC---------CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcC
Q 010847          229 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG  299 (499)
Q Consensus       229 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~  299 (499)
                       +++|.+|..|+++.++++|||+||.+..         ...+++|+||+.+++|+.+  +    |.++.+|+++.+    
T Consensus       238 -~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~----~~~r~~~~~~~~----  306 (318)
T 2woz_A          238 -TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L----KEIRYASGASCL----  306 (318)
T ss_dssp             -CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E----SCCGGGTTCEEE----
T ss_pred             -CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c----ccccccccceee----
Confidence             5689999999999999999999997642         2368999999999999998  2    334556655443    


Q ss_pred             ceEEEEEc
Q 010847          300 EHHLVAFG  307 (499)
Q Consensus       300 ~~~l~v~G  307 (499)
                      .+.|||+.
T Consensus       307 ~~~iyi~~  314 (318)
T 2woz_A          307 ATRLNLFK  314 (318)
T ss_dssp             EEEEEGGG
T ss_pred             CCEEEEEE
Confidence            34566653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.8e-39  Score=317.46  Aligned_cols=277  Identities=14%  Similarity=0.138  Sum_probs=211.5

Q ss_pred             CCCCcccc--------eEEEEcCCCCCcccCcEEEEEcC--CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEEC
Q 010847           23 ARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG   92 (499)
Q Consensus        23 ~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~   92 (499)
                      ++|.+|..        +|||+||...    +++++||+.  +++|+.+++++               +.+|.+|++++++
T Consensus         5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p---------------~~~R~~~~~~~~~   65 (357)
T 2uvk_A            5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFP---------------GGPRDQATSAFID   65 (357)
T ss_dssp             CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCT---------------TCCCBSCEEEEET
T ss_pred             CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCC---------------CCcCccceEEEEC
Confidence            67777776        8999999753    479999998  59999998763               1589999999999


Q ss_pred             CEEEEEccc-C---CCCCCCceEEEEECCCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCC-----------
Q 010847           93 TKLLILGGH-Y---KKSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR-----------  156 (499)
Q Consensus        93 ~~iyv~GG~-~---~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----------  156 (499)
                      ++||++||. .   ......+++++||+.+++|+.++   +++ .+|.+|++++++++||+|||.+...           
T Consensus        66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhc
Confidence            999999998 2   12224678999999999999998   444 9999999999999999999986432           


Q ss_pred             ----------------------CccCcEEEEECCCCeeEEeeecCCCCCCCcc-ceEEEEcCcEEEEEcCCCCC-CCCCc
Q 010847          157 ----------------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCSHS-IFFND  212 (499)
Q Consensus       157 ----------------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~-~~~~~  212 (499)
                                            ...+++++||+.+++|+.+.+   +|.++.. |+++.+ ++.||||||.... ..+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~  218 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE---SPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA  218 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE---CSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC---CCCCCcccccEEEE-CCEEEEEeeecCCCcccCc
Confidence                                  246899999999999999974   5655555 888887 5569999997543 45789


Q ss_pred             EEEEEC--CCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC-----------------CCcceEEEEECCCCce
Q 010847          213 LHVLDL--QTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----------------NGCQETIVLNMTKLAW  273 (499)
Q Consensus       213 i~~~d~--~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~~~~~~d~~~~~W  273 (499)
                      ++.||+  .+++|+.+... +.|.+|.+|+++.++++|||+||.+..                 ..++++++||+.+++|
T Consensus       219 v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W  297 (357)
T 2uvk_A          219 VFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW  297 (357)
T ss_dssp             EEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C
T ss_pred             eEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce
Confidence            999987  89999998432 234456788899999999999996432                 2246899999999999


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC--CCceEEEEECCCCCCCCCcccC
Q 010847          274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRDIPRPKIFQ  334 (499)
Q Consensus       274 ~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~W~~~~~~~  334 (499)
                      +.++.+|    .+|.++++  ++++  +.||||||.+..  ..+++++|+++.++|......|
T Consensus       298 ~~~~~~p----~~r~~~~~--~~~~--~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          298 DKSGELS----QGRAYGVS--LPWN--NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             EEEEECS----SCCBSSEE--EEET--TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eeCCCCC----CCccccee--EEeC--CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            9997664    34555544  3344  479999998643  4689999999999998765543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=2.2e-37  Score=329.91  Aligned_cols=278  Identities=14%  Similarity=0.151  Sum_probs=224.5

Q ss_pred             CCCCcccc-------eEEEEcCCCCCcccCcEEEEEcCCCceEEee-eCcccccCccccCCCCCCCCCccceeEEEE--C
Q 010847           23 ARPSPRYK-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLR-LETELDADKTEDSGLLEVLPPMSDHCMVKW--G   92 (499)
Q Consensus        23 ~~p~~r~~-------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~   92 (499)
                      ..|.+|++       +||++||... ..++++++||+.+++|+.++ +++.           +..|.+|.+|+++++  +
T Consensus       384 ~~p~rr~g~~~~~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~-----------~~~p~~R~~hs~~~~~~~  451 (695)
T 2zwa_A          384 CPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS-----------SEVPVARMCHTFTTISRN  451 (695)
T ss_dssp             CTTCCBSCEEEECSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC-----------SCCCCCCBSCEEEEETTT
T ss_pred             CCCCCceeEEEEECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC-----------CCCCccccceEEEEEccC
Confidence            56667776       8999999877 77899999999999999998 5432           445789999999999  9


Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ++||++||........+++++||+.+++|+.++   ++|.+|.+|+++++ +++||+|||.+...    ++++||+.+++
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~  524 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEI  524 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTE
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCc
Confidence            999999999876645788999999999999997   89999999999997 99999999987654    89999999999


Q ss_pred             eEEeeecCCCCCCCccceEEEEc-C-cEEEEEcCCCCC--CCCCcEEEEECCCCc------eEecccCCCCCCcCcccEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHA-N-RYLIVFGGCSHS--IFFNDLHVLDLQTNE------WSQPEIKGDLVTGRAGHAG  241 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~--~~~~~i~~~d~~~~~------W~~~~~~~~~p~~r~~~~~  241 (499)
                      |+.+.+.+.+|.+|.+|++++++ + ++||||||....  ..++++++||+.+++      |+.+..  .++.+|++|++
T Consensus       525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~  602 (695)
T 2zwa_A          525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQI  602 (695)
T ss_dssp             EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEE
T ss_pred             eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceE
Confidence            99999887899999999987765 2 679999998543  678999999999999      787743  12588999999


Q ss_pred             EEEC-CEEEEEeCCCCCC---CcceEEEEECCCCceEEeccCCCC---CCCCCCCCceEEEEEcCceEEEEEcCCC----
Q 010847          242 ITID-ENWYIVGGGDNNN---GCQETIVLNMTKLAWSILTSVKGR---NPLASEGLSVCSAIIEGEHHLVAFGGYN----  310 (499)
Q Consensus       242 ~~~~-~~l~v~GG~~~~~---~~~~~~~~d~~~~~W~~l~~~~~~---~p~~~~~~~~~~~~~~~~~~l~v~GG~~----  310 (499)
                      +.++ ++|||+||.+...   ..+++++||+.+++|+.++.+...   .++.+.+|+.  +.+.+ ..|||+||..    
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~--~~~~~-g~i~v~GGg~~cfs  679 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSL--VSTSM-GTIHIIGGGATCYG  679 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEE--ECC----CEEEECCEEECTT
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeE--EEeCC-CEEEEEeCCccCcC
Confidence            9999 9999999986553   478999999999999965432111   1124455543  33333 2688999953    


Q ss_pred             -CCCCceEEEEECCC
Q 010847          311 -GKYNNEVFVMRLKP  324 (499)
Q Consensus       311 -~~~~~~~~~~~~~~  324 (499)
                       +...+++|.+|+..
T Consensus       680 fGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          680 FGSVTNVGLKLIAIA  694 (695)
T ss_dssp             SCEEECCCEEEEECC
T ss_pred             ccccccceEEEEEEc
Confidence             33456899998754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.2e-36  Score=300.21  Aligned_cols=251  Identities=19%  Similarity=0.325  Sum_probs=201.6

Q ss_pred             CCccccCC--CCCeEEcccCCCCC-Ccccc--------eEEEEcCC-C----CCcccCcEEEEEcCCCceEEeeeCcccc
Q 010847            4 GSWHLELP--YDLWVTLPVSGARP-SPRYK--------KLYIVGGS-R----NGRFLSDVQVFDLRSLAWSNLRLETELD   67 (499)
Q Consensus         4 ~~~~~~~~--~~~W~~~~~~~~~p-~~r~~--------~l~~~GG~-~----~~~~~~~~~~yd~~t~~W~~~~~~~~~~   67 (499)
                      +.|+||+.  +++|..++   ++| .+|..        +|||+||. .    ....++++++||+.+++|+.+++++   
T Consensus        32 ~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---  105 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA---  105 (357)
T ss_dssp             CEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC---
T ss_pred             eEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC---
Confidence            56899997  59999998   577 78876        99999998 3    2456899999999999999998763   


Q ss_pred             cCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC---------------------------------CCCceEEEE
Q 010847           68 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---------------------------------SDSMIVRFI  114 (499)
Q Consensus        68 ~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~y  114 (499)
                                  |.+|.+|++++++++||++||.+...                                 ...+++++|
T Consensus       106 ------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A          106 ------------PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             ------------SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             ------------CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence                        57899999999999999999976432                                 135789999


Q ss_pred             ECCCCcEEEeecCCCCCCCCc-ceEEEEECCEEEEEcCcCCCCCccCcEEEEEC--CCCeeEEeeecCCCCCCCccceEE
Q 010847          115 DLETNLCGVMETSGKVPVARG-GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAPRYDHSAA  191 (499)
Q Consensus       115 d~~t~~W~~~~~~g~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~  191 (499)
                      |+.+++|+.+.   ++|.++. ++++++++++||+|||.+......+++++||+  .+++|+.+..+ ..|.+|.+|+++
T Consensus       174 d~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~  249 (357)
T 2uvk_A          174 DPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAG  249 (357)
T ss_dssp             ETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEE
T ss_pred             eCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEE
Confidence            99999999997   7786654 49999999999999998765556889999987  89999999764 334456688888


Q ss_pred             EEcCcEEEEEcCCCC-----------------CCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCC
Q 010847          192 LHANRYLIVFGGCSH-----------------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG  254 (499)
Q Consensus       192 ~~~~~~l~v~GG~~~-----------------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~  254 (499)
                      .++ +.||||||.+.                 ...++++++||+.+++|+.+   +++|.+|..|+++.++++|||+||.
T Consensus       250 ~~~-~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          250 ISN-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EET-TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCCBSSEEEEETTEEEEEEEE
T ss_pred             EEC-CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCcccceeEEeCCEEEEEeee
Confidence            885 46999999642                 22346899999999999997   5688999999999999999999998


Q ss_pred             CCCCC-cceEEEEECCCCceEEeccCC
Q 010847          255 DNNNG-CQETIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       255 ~~~~~-~~~~~~~d~~~~~W~~l~~~~  280 (499)
                      +.... ++++++|++.+++|..+...+
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            76544 689999999999999986654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=8.5e-34  Score=302.22  Aligned_cols=236  Identities=17%  Similarity=0.289  Sum_probs=195.9

Q ss_pred             CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee-c--CCCCCCCCcceEEEEE--CCEEEEEcCcCC
Q 010847           80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME-T--SGKVPVARGGHSVTLV--GSRLIIFGGEDR  154 (499)
Q Consensus        80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~--~g~~p~~r~~~~~~~~--~~~lyv~GG~~~  154 (499)
                      |+.|.+|+ ++++++||++||...  ...+++++||+.+++|+.++ +  .+.+|.+|.+|+++++  +++||+|||.+.
T Consensus       386 p~rr~g~~-~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~  462 (695)
T 2zwa_A          386 INRKFGDV-DVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA  462 (695)
T ss_dssp             TCCBSCEE-EECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred             CCCceeEE-EEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC
Confidence            45566655 448999999999876  34788999999999999998 3  3569999999999999  999999999987


Q ss_pred             CCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCC
Q 010847          155 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT  234 (499)
Q Consensus       155 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~  234 (499)
                      .....+++++||+.+++|+.+.   .+|.+|.+|+++.+.+++||||||.+...   ++++||+.+++|+.+...+.+|.
T Consensus       463 ~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          463 PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCC
Confidence            6657899999999999999986   57899999999997566699999987655   89999999999999976667899


Q ss_pred             cCcccEEEEEC---CEEEEEeCCCCC--CCcceEEEEECCCCc------eEEeccCCCCCCCCCCCCceEEEEEcCceEE
Q 010847          235 GRAGHAGITID---ENWYIVGGGDNN--NGCQETIVLNMTKLA------WSILTSVKGRNPLASEGLSVCSAIIEGEHHL  303 (499)
Q Consensus       235 ~r~~~~~~~~~---~~l~v~GG~~~~--~~~~~~~~~d~~~~~------W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l  303 (499)
                      +|++|++++++   ++|||+||.+..  ..++++++||+.++.      |+.+..+|   +.+|.+|+++  ++++ +.|
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p---~~~R~~~~~~--~~~~-~~i  610 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP---LFQRYGSQIK--YITP-RKL  610 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG---GGCCBSCEEE--EEET-TEE
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC---CCCcccceEE--EeCC-CEE
Confidence            99999988876   889999998544  446899999999999      88887643   3456666543  3441 479


Q ss_pred             EEEcCCCCC----CCceEEEEECCCCCCCCC
Q 010847          304 VAFGGYNGK----YNNEVFVMRLKPRDIPRP  330 (499)
Q Consensus       304 ~v~GG~~~~----~~~~~~~~~~~~~~W~~~  330 (499)
                      ||+||.+..    ..+++++||+.+++|...
T Consensus       611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  641 (695)
T 2zwa_A          611 LIVGGTSPSGLFDRTNSIISLDPLSETLTSI  641 (695)
T ss_dssp             EEECCBCSSCCCCTTTSEEEEETTTTEEEEC
T ss_pred             EEECCccCCCCCCCCCeEEEEECCCCeEEEe
Confidence            999998643    478999999999999843

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=5.2e-33  Score=295.92  Aligned_cols=317  Identities=10%  Similarity=0.041  Sum_probs=226.8

Q ss_pred             CccccCCCCCeEEcccCCCCCCc-----ccceEEEEcCCCCCc------ccCcEEEEEcCCCceEEeeeCcccccCcccc
Q 010847            5 SWHLELPYDLWVTLPVSGARPSP-----RYKKLYIVGGSRNGR------FLSDVQVFDLRSLAWSNLRLETELDADKTED   73 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~~~~p~~-----r~~~l~~~GG~~~~~------~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~   73 (499)
                      ..+|||..++|..++..+..+..     +.++||++||.....      ..+.+++||+.+++|+.++.++         
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------  238 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------  238 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------
T ss_pred             cccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------
Confidence            46799999999987743222211     123899999975432      2457999999999999998764         


Q ss_pred             CCCCCCCCCcccee--EE-EECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEE
Q 010847           74 SGLLEVLPPMSDHC--MV-KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIF  149 (499)
Q Consensus        74 ~~~~~~p~~r~~~s--~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~  149 (499)
                             .+|..|+  ++ ..+++||++||....     ++++||+.+++|+.++   +||.+|.+|+++++ +++||++
T Consensus       239 -------~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~  303 (656)
T 1k3i_A          239 -------TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTI  303 (656)
T ss_dssp             -------CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEE
T ss_pred             -------CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEE
Confidence                   2454443  33 358999999997643     5999999999999997   89999999999999 9999999


Q ss_pred             cCcCCCCCccCcEEEEECCCCeeEEeeecC--CCCCCCccceEEEEcCcEEEEEcCCCCC----CCCCcEEEEECCCCce
Q 010847          150 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNEW  223 (499)
Q Consensus       150 GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~W  223 (499)
                      ||........+++++||+.+++|+.+...+  +++..+. ++++.. ++++|+|||.++.    ...++++.||+.++.|
T Consensus       304 GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w  381 (656)
T 1k3i_A          304 GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  381 (656)
T ss_dssp             CCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence            996444446889999999999999985432  2333333 233333 5569999998644    3467899999999998


Q ss_pred             EecccCCCC----CCcCcccEEEE---ECCEEEEEeCCCC---CCCcc---eEEEEECCCCceEEec--cCCCCCCCCCC
Q 010847          224 SQPEIKGDL----VTGRAGHAGIT---IDENWYIVGGGDN---NNGCQ---ETIVLNMTKLAWSILT--SVKGRNPLASE  288 (499)
Q Consensus       224 ~~~~~~~~~----p~~r~~~~~~~---~~~~l~v~GG~~~---~~~~~---~~~~~d~~~~~W~~l~--~~~~~~p~~~~  288 (499)
                      .........    +.++..++++.   ++++|||+||.+.   ...++   ++++||+.++.|..+.  .+    |.+|.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m----p~~R~  457 (656)
T 1k3i_A          382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL----YFART  457 (656)
T ss_dssp             EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC----SSCCB
T ss_pred             eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC----CCCcc
Confidence            764321111    12334445553   4899999999643   22234   7889999999999886  33    33444


Q ss_pred             CCceEEEEEcCceEEEEEcCCCC-------CCCceEEEEECCCCCCCCCcccCCchhhhhhhhh---HHHHHhccc
Q 010847          289 GLSVCSAIIEGEHHLVAFGGYNG-------KYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASV---TAAYALAKS  354 (499)
Q Consensus       289 ~~~~~~~~~~~~~~l~v~GG~~~-------~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~  354 (499)
                      .+.  ++++.+ +.|||+||.+.       ...+++++||+..++|.....++.++..++.+.+   ..+|+++|.
T Consensus       458 ~~~--~~~l~~-g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          458 FHT--SVVLPD-GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCE--EEECTT-SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCC--eEECCC-CCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            443  334422 36899999752       3467899999999999999988988887765544   346666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=6.5e-31  Score=279.74  Aligned_cols=291  Identities=10%  Similarity=0.063  Sum_probs=211.3

Q ss_pred             CccccCCCCCeEEcccCCCCCCccc--------ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCC
Q 010847            5 SWHLELPYDLWVTLPVSGARPSPRY--------KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   76 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~~~~p~~r~--------~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~   76 (499)
                      .+.|||.+++|..++..+......+        ++||++||....    ++++||+.+++|..++.+             
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~-------------  283 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDM-------------  283 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCC-------------
T ss_pred             EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCC-------------
Confidence            5789999999999874321111111        299999997543    799999999999999876             


Q ss_pred             CCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCC--CCCCCCcceEEEEECCEEEEEcCcC
Q 010847           77 LEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG--KVPVARGGHSVTLVGSRLIIFGGED  153 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~lyv~GG~~  153 (499)
                         |.+|.+|+++++ +++||++||........+++++||+.+++|+.++..+  +++.++.. +++..++++|+|||.+
T Consensus       284 ---~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~  359 (656)
T 1k3i_A          284 ---QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKK  359 (656)
T ss_dssp             ---SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGG
T ss_pred             ---CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCC
Confidence               458999999999 9999999995443334788999999999999985432  34444443 5555789999999986


Q ss_pred             CCC---CccCcEEEEECCCCeeEEeeecCCC----CCCCccceEEEE--cCcEEEEEcCCCC---CCCCC---cEEEEEC
Q 010847          154 RSR---KLLNDVHFLDLETMTWDAVEVTQTP----PAPRYDHSAALH--ANRYLIVFGGCSH---SIFFN---DLHVLDL  218 (499)
Q Consensus       154 ~~~---~~~~~v~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~~~--~~~~l~v~GG~~~---~~~~~---~i~~~d~  218 (499)
                      +..   ...++++.||+.++.|.........    +.++..++++.+  .+++||+|||...   ...++   .+++||+
T Consensus       360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~  439 (656)
T 1k3i_A          360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  439 (656)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence            431   1467899999999998764432111    123445555553  3677999999642   33445   7899999


Q ss_pred             CCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCC------CCcceEEEEECCCCceEEeccCCCCCCCCCCCCc
Q 010847          219 QTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS  291 (499)
Q Consensus       219 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~------~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~  291 (499)
                      .+++|..+. .+.+|.+|..|+++.+ +++|||+||.+..      ...+++++||+.+++|+.+..+    |.+|.+|+
T Consensus       440 ~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~----~~~R~~hs  514 (656)
T 1k3i_A          440 GTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHS  514 (656)
T ss_dssp             TSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTE
T ss_pred             CCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC----CCcccccc
Confidence            999999874 2578999999999888 8999999996532      3357899999999999998765    34677776


Q ss_pred             eEEEEEcCceEEEEEcCCCC-C---CCceEEEEECC
Q 010847          292 VCSAIIEGEHHLVAFGGYNG-K---YNNEVFVMRLK  323 (499)
Q Consensus       292 ~~~~~~~~~~~l~v~GG~~~-~---~~~~~~~~~~~  323 (499)
                      .+.+..++  .|||+||... .   ...++.+|.+.
T Consensus       515 ~a~ll~dg--~v~v~GG~~~~~~~~~~~~~e~~~Pp  548 (656)
T 1k3i_A          515 ISLLLPDG--RVFNGGGGLCGDCTTNHFDAQIFTPN  548 (656)
T ss_dssp             EEEECTTS--CEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred             HhhcCCCc--EEEecCCCCCCCCCCCeeEEEEEeCh
Confidence            54433344  5888898532 1   23356666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.31  E-value=0.002  Score=61.41  Aligned_cols=233  Identities=9%  Similarity=0.005  Sum_probs=132.8

Q ss_pred             cCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           44 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        44 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      -+.+-.||+.++++...-....           ...+.+...+.++..++++|+....      .+.+.++|+.+++-..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~-----------n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~   78 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRA-----------NGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVG   78 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHH-----------HSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhh-----------cCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEE
Confidence            4579999999998865321100           0012334456677789999998753      3459999999987633


Q ss_pred             -eecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC-ccceEEEEcCcEEEE
Q 010847          124 -METSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR-YDHSAALHANRYLIV  200 (499)
Q Consensus       124 -~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v  200 (499)
                       ++   ....   -+.++. .+++||+....      .+.+.++|+.+.+-...-..+...... .-+.++. .++++|+
T Consensus        79 ~i~---~~~~---p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv  145 (328)
T 3dsm_A           79 RIT---GFTS---PRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYV  145 (328)
T ss_dssp             EEE---CCSS---EEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEE
T ss_pred             EcC---CCCC---CcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEE
Confidence             32   1211   223333 67899997642      357999999998765332223210000 1123333 5777888


Q ss_pred             EcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCC-----cceEEEEECCCCceE
Q 010847          201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG-----CQETIVLNMTKLAWS  274 (499)
Q Consensus       201 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~-----~~~~~~~d~~~~~W~  274 (499)
                      ..-    ...+.+.++|+.+++....-..+..|     +.++.. ++++|+.........     .+.++++|+.+.+..
T Consensus       146 ~~~----~~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          146 NCW----SYQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             EEC----TTCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             EcC----CCCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence            742    01357999999988755421112222     222332 467777754321111     257999999988765


Q ss_pred             EeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCC
Q 010847          275 ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       275 ~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~  328 (499)
                      .....+..      ......+...+...||+..+       .++++|+...+..
T Consensus       217 ~~~~~~~g------~~p~~la~~~d~~~lyv~~~-------~v~~~d~~t~~~~  257 (328)
T 3dsm_A          217 KQFKFKLG------DWPSEVQLNGTRDTLYWINN-------DIWRMPVEADRVP  257 (328)
T ss_dssp             EEEECCTT------CCCEEEEECTTSCEEEEESS-------SEEEEETTCSSCC
T ss_pred             EEEecCCC------CCceeEEEecCCCEEEEEcc-------EEEEEECCCCcee
Confidence            33222210      01122233333567887654       7899999876653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.22  E-value=0.0013  Score=62.71  Aligned_cols=237  Identities=8%  Similarity=-0.040  Sum_probs=130.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEE-eeeCcccccCccccCCCCCCCCCccceeEEE-ECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSN-LRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~-~~~~iyv~GG~~~~~~~~  108 (499)
                      ++|+...     ..+.+.++|+.+++-.. ++..                   ...+.++. -++++|+....      .
T Consensus        55 ~lyv~~~-----~~~~v~viD~~t~~~~~~i~~~-------------------~~p~~i~~~~~g~lyv~~~~------~  104 (328)
T 3dsm_A           55 IGWIVVN-----NSHVIFAIDINTFKEVGRITGF-------------------TSPRYIHFLSDEKAYVTQIW------D  104 (328)
T ss_dssp             EEEEEEG-----GGTEEEEEETTTCCEEEEEECC-------------------SSEEEEEEEETTEEEEEEBS------C
T ss_pred             EEEEEEc-----CCCEEEEEECcccEEEEEcCCC-------------------CCCcEEEEeCCCeEEEEECC------C
Confidence            5666643     13569999999987633 3211                   12233343 67899988643      3


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      +.+.++|+.+++-...-..+.... ...-..++..+++||+..- .    ..+.+.++|+.+++....-..+..|     
T Consensus       105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~p-----  174 (328)
T 3dsm_A          105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQP-----  174 (328)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSCB-----
T ss_pred             CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCCc-----
Confidence            459999999987653322223110 0011234447889999842 0    2457999999998865443333222     


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCC-----CCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCc
Q 010847          188 HSAALHANRYLIVFGGCSHSIF-----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGC  260 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~-----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~  260 (499)
                      +.++...++.+|+.........     .+.++++|+.+.+....-   ..+....-..++..  ++.+|+..+       
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~---~~~~g~~p~~la~~~d~~~lyv~~~-------  244 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF---KFKLGDWPSEVQLNGTRDTLYWINN-------  244 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE---ECCTTCCCEEEEECTTSCEEEEESS-------
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE---ecCCCCCceeEEEecCCCEEEEEcc-------
Confidence            2344445667777653221111     368999999988765321   12222222344444  456777643       


Q ss_pred             ceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcCCCCCCCceEEEEECCC
Q 010847          261 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       261 ~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                       .++++|+.+.+.......+.      .+.....+.++ .+..|||....+......+++||+..
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEF------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCC------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             -EEEEEECCCCceeeeeeecC------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence             68999998876421111110      01222334444 24578887632222345799999873

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.00092  Score=60.30  Aligned_cols=205  Identities=16%  Similarity=0.024  Sum_probs=128.7

Q ss_pred             cceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEE
Q 010847           84 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  163 (499)
Q Consensus        84 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~  163 (499)
                      .-+.+...++.||+-.|..+.    +.+..+|+.+++-....   .+|....+..++..+++||+....      .+.++
T Consensus        22 ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~   88 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHEGF   88 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred             ccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence            334667778999999987653    45999999999876654   566666777888899999998543      56799


Q ss_pred             EEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcC-cccEE
Q 010847          164 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHAG  241 (499)
Q Consensus       164 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~~  241 (499)
                      +||+.+.+-..--+     .+..+.+++. +++.||+.-|      .+.++.+|+.+.+-.. +.+ ...+.+. .--.+
T Consensus        89 v~D~~tl~~~~ti~-----~~~~Gwglt~-dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lNeL  155 (243)
T 3mbr_X           89 VYDLATLTPRARFR-----YPGEGWALTS-DDSHLYMSDG------TAVIRKLDPDTLQQVGSIKV-TAGGRPLDNLNEL  155 (243)
T ss_dssp             EEETTTTEEEEEEE-----CSSCCCEEEE-CSSCEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEE
T ss_pred             EEECCcCcEEEEEe-----CCCCceEEee-CCCEEEEECC------CCeEEEEeCCCCeEEEEEEE-ccCCcccccceee
Confidence            99999876533222     2234555654 4566888655      3579999999876433 332 1222232 22245


Q ss_pred             EEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCC-----CCCCceEEEEE-cCceEEEEEcCCCCCCCc
Q 010847          242 ITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA-----SEGLSVCSAII-EGEHHLVAFGGYNGKYNN  315 (499)
Q Consensus       242 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~-----~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~  315 (499)
                      ..+++++|+---     ..+++.+.|+.++.-...-++....|..     ........+.. ...+.|||.|    +..+
T Consensus       156 e~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG----K~wp  226 (243)
T 3mbr_X          156 EWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG----KRWP  226 (243)
T ss_dssp             EEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE----TTCS
T ss_pred             EEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC----CCCC
Confidence            566888886532     2458999999998755443333221111     12223333333 3356888876    3456


Q ss_pred             eEEEEECC
Q 010847          316 EVFVMRLK  323 (499)
Q Consensus       316 ~~~~~~~~  323 (499)
                      .+|...+.
T Consensus       227 ~~~~v~~~  234 (243)
T 3mbr_X          227 MLYEIRLT  234 (243)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEe
Confidence            77766653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.06  E-value=0.00083  Score=60.58  Aligned_cols=150  Identities=19%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .||+-.|..+   -+.+.++|+.+++=.....++                ....+..++..+++||+....      .+.
T Consensus        32 ~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~----------------~~~fgeGi~~~~~~ly~ltw~------~~~   86 (243)
T 3mbr_X           32 HLYESTGETG---RSSVRKVDLETGRILQRAEVP----------------PPYFGAGIVAWRDRLIQLTWR------NHE   86 (243)
T ss_dssp             EEEEEECCTT---SCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEESS------SSE
T ss_pred             EEEEECCCCC---CceEEEEECCCCCEEEEEeCC----------------CCcceeEEEEeCCEEEEEEee------CCE
Confidence            7788777543   257899999999876655442                245677888899999998543      345


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeE-EeeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~  189 (499)
                      +++||+.+.+-..--     |.+..+.+++..+++||+.-|       .+.++.+|+.|.+-. .+.+ +..+.+.....
T Consensus        87 v~v~D~~tl~~~~ti-----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lN  153 (243)
T 3mbr_X           87 GFVYDLATLTPRARF-----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKV-TAGGRPLDNLN  153 (243)
T ss_dssp             EEEEETTTTEEEEEE-----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEE
T ss_pred             EEEEECCcCcEEEEE-----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEE-ccCCcccccce
Confidence            999999988643322     223356777777788998754       457999999997643 3333 22233333322


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      ...+.++.||+--     ...|+|.+.|+.+++-
T Consensus       154 eLe~~~G~lyanv-----w~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          154 ELEWVNGELLANV-----WLTSRIARIDPASGKV  182 (243)
T ss_dssp             EEEEETTEEEEEE-----TTTTEEEEECTTTCBE
T ss_pred             eeEEeCCEEEEEE-----CCCCeEEEEECCCCCE
Confidence            2223366677532     2357899999999873

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.92  E-value=0.0044  Score=56.40  Aligned_cols=202  Identities=10%  Similarity=-0.005  Sum_probs=121.6

Q ss_pred             eeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEE
Q 010847           86 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  165 (499)
Q Consensus        86 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y  165 (499)
                      ..+...++.||+..|..+.    +.+.++|+.|++-..-.   .++....+..++..+++||+....      .+.+++|
T Consensus        46 qGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~  112 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGFVW  112 (262)
T ss_dssp             EEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEEEE
T ss_pred             ceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEEEE
Confidence            4445558999999987653    45999999999865544   455555666788889999998553      5679999


Q ss_pred             ECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcCcc-cEEEE
Q 010847          166 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGIT  243 (499)
Q Consensus       166 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~~  243 (499)
                      |+.+.+-..--+     .+-.+.+++. +++.||+.-|      .+.++.+|+.+.+-.. +.+. ....+... -.+..
T Consensus       113 D~~t~~~~~ti~-----~~~eG~glt~-dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~  179 (262)
T 3nol_A          113 NIRNLRQVRSFN-----YDGEGWGLTH-NDQYLIMSDG------TPVLRFLDPESLTPVRTITVT-AHGEELPELNELEW  179 (262)
T ss_dssp             ETTTCCEEEEEE-----CSSCCCCEEE-CSSCEEECCS------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEE
T ss_pred             ECccCcEEEEEE-----CCCCceEEec-CCCEEEEECC------CCeEEEEcCCCCeEEEEEEec-cCCccccccceeEE
Confidence            999876532221     1224455554 4566888644      3679999999876433 3221 11112111 12455


Q ss_pred             ECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCC----CCCCCceEEEEE-cCceEEEEEcCCCCCCCceEE
Q 010847          244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL----ASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVF  318 (499)
Q Consensus       244 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~----~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~  318 (499)
                      .++.+|+---     ..+++.+.|+.++.-....+++...|.    .........+.. ...+.|||.|-    ..+.+|
T Consensus       180 ~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK----~Wp~~~  250 (262)
T 3nol_A          180 VDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK----LWPKVF  250 (262)
T ss_dssp             ETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET----TCSEEE
T ss_pred             ECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC----CCCceE
Confidence            6888886432     245799999999875544444322111    011222333333 34567888763    355666


Q ss_pred             EEEC
Q 010847          319 VMRL  322 (499)
Q Consensus       319 ~~~~  322 (499)
                      ...+
T Consensus       251 ev~~  254 (262)
T 3nol_A          251 EITL  254 (262)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.90  E-value=0.0081  Score=55.11  Aligned_cols=206  Identities=14%  Similarity=-0.028  Sum_probs=119.7

Q ss_pred             eeEEEEC-CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEE
Q 010847           86 HCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  164 (499)
Q Consensus        86 ~s~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~  164 (499)
                      +.++..+ +.||+..|...    .+.+.++|+.+++-....   +++....+..++..+++||+..-      ..+.+++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW------LKNIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence            5555555 79999877533    345999999999865543   33434455567777899999854      2567999


Q ss_pred             EECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE-ecccCCCCCCcC-cccEEE
Q 010847          165 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS-QPEIKGDLVTGR-AGHAGI  242 (499)
Q Consensus       165 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~-~~~~~~~~p~~r-~~~~~~  242 (499)
                      ||+.+.+=..--+.+ .|   .+.+++ .+++.+|+.-|      .+.++.+|+.+.+-. .+.+ +..+.+. .-..+.
T Consensus        91 iD~~t~~v~~~i~~g-~~---~g~glt-~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele  158 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQ-MK---DGWGLA-TDGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELE  158 (266)
T ss_dssp             EETTTTEEEEEEECC-SS---SCCEEE-ECSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECCCCcEEEEEECC-CC---CeEEEE-ECCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEE
Confidence            999987543222222 12   233333 34566888654      468999999886633 3332 2122222 122344


Q ss_pred             EECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCC-----CCCCCCc-eEEEEEcCceEEEEEcCCCCCCCce
Q 010847          243 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-----LASEGLS-VCSAIIEGEHHLVAFGGYNGKYNNE  316 (499)
Q Consensus       243 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p-----~~~~~~~-~~~~~~~~~~~l~v~GG~~~~~~~~  316 (499)
                      ..++.+|+--.     ..+++.+.|+.+++-...-.+++..+     ....... ...+...+.+.+||.|+..    +.
T Consensus       159 ~~dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~----~~  229 (266)
T 2iwa_A          159 YINGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW----PK  229 (266)
T ss_dssp             EETTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC----SE
T ss_pred             EECCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC----Ce
Confidence            45788886632     24579999999886443322221000     0001112 2233333456889888754    47


Q ss_pred             EEEEECCCC
Q 010847          317 VFVMRLKPR  325 (499)
Q Consensus       317 ~~~~~~~~~  325 (499)
                      +++.++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888887553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.77  E-value=0.0038  Score=56.78  Aligned_cols=150  Identities=15%  Similarity=0.052  Sum_probs=94.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .||+-.|..+   -+.+.++|+.+++=...-+++                ....+..++..+++||+....      .+.
T Consensus        54 ~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~----------------~~~FgeGit~~g~~ly~ltw~------~~~  108 (262)
T 3nol_A           54 YFYESTGLNG---RSSIRKVDIESGKTLQQIELG----------------KRYFGEGISDWKDKIVGLTWK------NGL  108 (262)
T ss_dssp             EEEEEEEETT---EEEEEEECTTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEESS------SSE
T ss_pred             EEEEECCCCC---CceEEEEECCCCcEEEEEecC----------------CccceeEEEEeCCEEEEEEee------CCE
Confidence            6666666432   246889999999866544432                234667788889999998543      345


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeE-EeeecCCCCCCCccc-
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDH-  188 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~-  188 (499)
                      +++||+.+.+-..--     +.+-.+.+++..++.||+.-|       .+.++.+|+.|.+-. .+... ..+.+.... 
T Consensus       109 v~v~D~~t~~~~~ti-----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lN  175 (262)
T 3nol_A          109 GFVWNIRNLRQVRSF-----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AHGEELPELN  175 (262)
T ss_dssp             EEEEETTTCCEEEEE-----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ETTEECCCEE
T ss_pred             EEEEECccCcEEEEE-----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cCCccccccc
Confidence            999999988653322     222356667766778888644       357999999987643 33331 111122221 


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  224 (499)
                      -+... ++.||+--     ...++|.+.|+.+++-.
T Consensus       176 ELe~~-~G~lyan~-----w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          176 ELEWV-DGEIFANV-----WQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             EEEEE-TTEEEEEE-----TTSSEEEEECTTTCBEE
T ss_pred             eeEEE-CCEEEEEE-----ccCCeEEEEECCCCcEE
Confidence            12333 66677632     23578999999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.71  E-value=0.0019  Score=58.84  Aligned_cols=147  Identities=13%  Similarity=0.041  Sum_probs=93.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .||+..|..+.     +.++|+.+++=...- +                +....+..++..+++||+....      .+.
T Consensus        66 ~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l----------------~~~~FgeGit~~g~~Ly~ltw~------~~~  117 (268)
T 3nok_A           66 HFFESTGHQGT-----LRQLSLESAQPVWME-R----------------LGNIFAEGLASDGERLYQLTWT------EGL  117 (268)
T ss_dssp             EEEEEETTTTE-----EEECCSSCSSCSEEE-E----------------CTTCCEEEEEECSSCEEEEESS------SCE
T ss_pred             EEEEEcCCCCE-----EEEEECCCCcEEeEE-C----------------CCCcceeEEEEeCCEEEEEEcc------CCE
Confidence            67777774322     889999998764433 3                2234566788889999998543      345


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEE-eeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~p~~r~~~~  189 (499)
                      +++||+.+.+-..--     +.+-.+.+++..++.||+.-|       .+.++.+|+.|.+-.. +.. +..+.+.....
T Consensus       118 v~V~D~~Tl~~~~ti-----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lN  184 (268)
T 3nok_A          118 LFTWSGMPPQRERTT-----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQV-KLRGQPVELIN  184 (268)
T ss_dssp             EEEEETTTTEEEEEE-----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEE
T ss_pred             EEEEECCcCcEEEEE-----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEe-CCCCccccccc
Confidence            999999998654322     222346677777889999754       4579999999976433 332 22222322222


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      -..+.++.||+--     ...++|.+.|+.+++-
T Consensus       185 eLe~~dG~lyanv-----w~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          185 ELECANGVIYANI-----WHSSDVLEIDPATGTV  213 (268)
T ss_dssp             EEEEETTEEEEEE-----TTCSEEEEECTTTCBE
T ss_pred             ccEEeCCEEEEEE-----CCCCeEEEEeCCCCcE
Confidence            2222366677532     2357899999999873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.70  E-value=0.03  Score=55.44  Aligned_cols=199  Identities=15%  Similarity=0.179  Sum_probs=107.6

Q ss_pred             EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++..++..++.|+.++      .+.+||+.+..-...-     ........++.+++..++.|+.+      ..+.+||+
T Consensus       244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~  306 (445)
T 2ovr_B          244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDV  306 (445)
T ss_dssp             EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SCEEEEET
T ss_pred             EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCC------CeEEEEEC
Confidence            3444666677776533      3888998776533222     11112223344466666776653      35899999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCE
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  247 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  247 (499)
                      .+.+-...-. +    ......+....++ +++.|+.+     +.+.+||+.+..-...- .... .....-..+..++.
T Consensus       307 ~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          307 ETGNCIHTLT-G----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-QGPN-KHQSAVTCLQFNKN  373 (445)
T ss_dssp             TTCCEEEEEC-C----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CSTT-SCSSCEEEEEECSS
T ss_pred             CCCCEEEEEc-C----CcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEE-ccCC-CCCCCEEEEEECCC
Confidence            8765432211 1    1122233344466 56666644     36899998776533211 1111 11122233444677


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEec-cCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~-~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      +++.|+.++     .+.+||+.+......- ....    .........+....+..++++|+.++.....+++||++..
T Consensus       374 ~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          374 FVITSSDDG-----TVKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEETTS-----EEEEEETTTCCEEEEEEECTT----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEeCCC-----eEEEEECCCCceeeeeecccc----CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            777776442     5889999887654321 1110    0111223344455556778889888766667889998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.64  E-value=0.0068  Score=58.79  Aligned_cols=225  Identities=16%  Similarity=0.095  Sum_probs=117.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+|+.|+.+     ..+.+||+.+++-...-...                  ..-.+++..  +..||+.|+.+      
T Consensus         3 ~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~d------   53 (391)
T 1l0q_A            3 FAYIANSES-----DNISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------   53 (391)
T ss_dssp             EEEEEETTT-----TEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------
T ss_pred             EEEEEcCCC-----CEEEEEECCCCeEEEEeecC------------------CCcceEEECCCCCEEEEECCCC------
Confidence            467777643     35899999988654432221                  111222222  45677777543      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      ..+.++|+.+++......   .+.  .-.+++..  +..||+.|..      .+.+++||+.+++.......+     ..
T Consensus        54 ~~i~v~d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~-----~~  117 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG-----KS  117 (391)
T ss_dssp             TEEEEEETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS-----SS
T ss_pred             CeEEEEECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC-----CC
Confidence            359999999887654432   111  11222222  3456666543      246999999988765443221     11


Q ss_pred             cceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceE
Q 010847          187 DHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  263 (499)
Q Consensus       187 ~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~  263 (499)
                      -..++... ++.+|+.++.+     +.+++||+.+.+....-..+     .....++..  ++.+|+.++.+     ..+
T Consensus       118 ~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v  182 (391)
T 1l0q_A          118 PLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSI  182 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred             cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEE
Confidence            22333333 44566666533     47999999887755432111     111233333  23566665532     358


Q ss_pred             EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .++|+.+..........        ..........+..+|++.+..  .....++++|+...
T Consensus       183 ~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~--~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          183 SVIDTVTNSVIDTVKVE--------AAPSGIAVNPEGTKAYVTNVD--KYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEETTTTEEEEEEECS--------SEEEEEEECTTSSEEEEEEEC--SSCCEEEEEETTTT
T ss_pred             EEEECCCCeEEEEEecC--------CCccceEECCCCCEEEEEecC--cCCCcEEEEECCCC
Confidence            99999887654332211        111122222333456654421  01346788887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.61  E-value=0.04  Score=50.45  Aligned_cols=193  Identities=10%  Similarity=-0.086  Sum_probs=111.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .||+..|..+   .+.+.++|+.+++=...-+++                ....+..++..++.||+..-.      .+.
T Consensus        33 ~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~----------------~~~fgeGi~~~g~~lyv~t~~------~~~   87 (266)
T 2iwa_A           33 TLFESTGLYG---RSSVRQVALQTGKVENIHKMD----------------DSYFGEGLTLLNEKLYQVVWL------KNI   87 (266)
T ss_dssp             EEEEEECSTT---TCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEETT------CSE
T ss_pred             eEEEECCCCC---CCEEEEEECCCCCEEEEEecC----------------CCcceEEEEEeCCEEEEEEec------CCE
Confidence            7888776322   357999999999865543332                233556777789999998542      345


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc-e
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-S  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~-~  189 (499)
                      +.+||+.+.+-..--+.+ +|   .+..++..++++|+.-|       .+.++.+|+.+.+-..--..+..+.+.... .
T Consensus        88 v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            999999987543222122 23   34455555678998643       457999999987643332222222232222 2


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCC--------CCCcCcccEEEEE--CCEEEEEeCCCCCC
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGD--------LVTGRAGHAGITI--DENWYIVGGGDNNN  258 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~--------~p~~r~~~~~~~~--~~~l~v~GG~~~~~  258 (499)
                      +... ++.+|+--.     ..+.|.+.|+.+++-.. +...+.        .+..-.-.+++..  ++++||.|+..   
T Consensus       157 le~~-dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---  227 (266)
T 2iwa_A          157 LEYI-NGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---  227 (266)
T ss_dssp             EEEE-TTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---
T ss_pred             EEEE-CCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---
Confidence            2333 667776432     24789999999886322 211110        0111122344444  45899988743   


Q ss_pred             CcceEEEEECCC
Q 010847          259 GCQETIVLNMTK  270 (499)
Q Consensus       259 ~~~~~~~~d~~~  270 (499)
                        +.++..++..
T Consensus       228 --~~v~~i~l~~  237 (266)
T 2iwa_A          228 --PKLFEIKLHL  237 (266)
T ss_dssp             --SEEEEEEEEE
T ss_pred             --CeEEEEEEec
Confidence              3566666543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.53  E-value=0.013  Score=56.80  Aligned_cols=226  Identities=13%  Similarity=0.051  Sum_probs=116.9

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .||+.|+.+     ..+.+||+.+++....-...                  ..-.+++..  ++.||+.|..      .
T Consensus        45 ~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~------------------~~v~~~~~spdg~~l~~~~~~------~   95 (391)
T 1l0q_A           45 KVYVANAHS-----NDVSIIDTATNNVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMA------S   95 (391)
T ss_dssp             EEEEEEGGG-----TEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEETT------T
T ss_pred             EEEEECCCC-----CeEEEEECCCCeEEEEEECC------------------CCccceEECCCCCEEEEEECC------C
Confidence            566666532     36899999988765543321                  111222222  4567666543      2


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      ..+.+||+.+++.......   .  ..-.+++..  +..||+.++.      .+.+++||+.+.+....-..+..     
T Consensus        96 ~~v~v~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-----  159 (391)
T 1l0q_A           96 STLSVIDTTSNTVAGTVKT---G--KSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGRS-----  159 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC---S--SSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCSS-----
T ss_pred             CEEEEEECCCCeEEEEEeC---C--CCcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecCCC-----
Confidence            4599999999876544321   1  112233332  3367777653      34699999998876554432211     


Q ss_pred             cceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEE
Q 010847          187 DHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI  264 (499)
Q Consensus       187 ~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~  264 (499)
                      -..++... ++.+|+.++.+     +.+++||+.+........     ......+++.. ++..+++++.+.  ....+.
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~--~~~~v~  227 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK--YFNTVS  227 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS--SCCEEE
T ss_pred             cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc--CCCcEE
Confidence            12333333 44566665543     469999998876544311     11111122222 333344433211  124689


Q ss_pred             EEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          265 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       265 ~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      +||+.+..-...  ++..      ..........+..+|++.++.++    .+.++|+...
T Consensus       228 ~~d~~~~~~~~~--~~~~------~~~~~~~~s~dg~~l~~s~~~d~----~v~v~d~~~~  276 (391)
T 1l0q_A          228 MIDTGTNKITAR--IPVG------PDPAGIAVTPDGKKVYVALSFXN----TVSVIDTATN  276 (391)
T ss_dssp             EEETTTTEEEEE--EECC------SSEEEEEECTTSSEEEEEETTTT----EEEEEETTTT
T ss_pred             EEECCCCeEEEE--EecC------CCccEEEEccCCCEEEEEcCCCC----EEEEEECCCC
Confidence            999987754322  2111      01112222233456777666543    6778887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.49  E-value=0.026  Score=55.43  Aligned_cols=222  Identities=10%  Similarity=-0.048  Sum_probs=111.1

Q ss_pred             CCccccCCCCCeEEcc---cCCCCCCcc---cceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCC
Q 010847            4 GSWHLELPYDLWVTLP---VSGARPSPR---YKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   77 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~---~~~~~p~~r---~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~   77 (499)
                      .-|.+|+..+.+..+.   ....+-...   .+.+++.++.+     ..+.+||+.++......+....           
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~-----------  165 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKY-----------  165 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHH-----------
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccc-----------
Confidence            3466777666554332   111111111   22677776532     3489999999887654332110           


Q ss_pred             CCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcC
Q 010847           78 EVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGED  153 (499)
Q Consensus        78 ~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~  153 (499)
                        .........+.+  ++.+|+.|+.+      ..+.+||+.+++......   .. ...-.+++..  ++.+|+.++.+
T Consensus       166 --~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~  233 (433)
T 3bws_A          166 --KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD---LT-GKWSKILLYDPIRDLVYCSNWIS  233 (433)
T ss_dssp             --HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE---CS-SSSEEEEEEETTTTEEEEEETTT
T ss_pred             --cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc---CC-CCCeeEEEEcCCCCEEEEEecCC
Confidence              001112222333  67888887643      349999998876543321   11 1111222322  34677776532


Q ss_pred             CCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC---CCCcEEEEECCCCceEecccCC
Q 010847          154 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKG  230 (499)
Q Consensus       154 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~  230 (499)
                            ..+.+||+.+.+......     ....-..++...++..+++++.....   .-..+++||+.+.+......  
T Consensus       234 ------~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--  300 (433)
T 3bws_A          234 ------EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--  300 (433)
T ss_dssp             ------TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--
T ss_pred             ------CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--
Confidence                  369999998876543321     11112223333344344444432211   12478999998775433210  


Q ss_pred             CCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          231 DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       231 ~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                         .+.....++..  ++.+|+.++.+     ..+.+||+.+..-.
T Consensus       301 ---~~~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~  338 (433)
T 3bws_A          301 ---PPGNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQ  338 (433)
T ss_dssp             ---EEECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred             ---CCCCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEE
Confidence               01111122222  23577776533     36889999876543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.40  E-value=0.1  Score=50.20  Aligned_cols=205  Identities=13%  Similarity=0.115  Sum_probs=110.4

Q ss_pred             CccccCCCCC--eEEcccCCC--CCCcccceEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCC
Q 010847            5 SWHLELPYDL--WVTLPVSGA--RPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLE   78 (499)
Q Consensus         5 ~~~~~~~~~~--W~~~~~~~~--~p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      -+++|+.+++  |..-.....  .|....+.||+..+      ...++.||+.+++  |+.......             
T Consensus       115 l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~-------------  175 (376)
T 3q7m_A          115 VYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPS-------------  175 (376)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---------------
T ss_pred             EEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCc-------------
Confidence            3567776554  654332111  12222225555332      2369999998886  776432210             


Q ss_pred             CCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCCCCCCCC--------cceEEEEECCEEEE
Q 010847           79 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVAR--------GGHSVTLVGSRLII  148 (499)
Q Consensus        79 ~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r--------~~~~~~~~~~~lyv  148 (499)
                       ...+...+.+..++.||+ |..      ...++.||+.++  .|+...   ..|...        .....+..++.||+
T Consensus       176 -~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~  244 (376)
T 3q7m_A          176 -LSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFA  244 (376)
T ss_dssp             ----CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC---CC-----------CCCCCCEEETTEEEE
T ss_pred             -eeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCcEEECCEEEE
Confidence             111223344556787776 322      234999999877  466543   112111        22333456788887


Q ss_pred             EcCcCCCCCccCcEEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eE
Q 010847          149 FGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WS  224 (499)
Q Consensus       149 ~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~  224 (499)
                      .+.       ...+++||+.++  .|....     +    ......+.++.+|+...      ...++.||+.+++  |+
T Consensus       245 ~~~-------~g~l~~~d~~tG~~~w~~~~-----~----~~~~~~~~~~~l~~~~~------~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          245 LAY-------NGNLTALDLRSGQIMWKREL-----G----SVNDFIVDGNRIYLVDQ------NDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             ECT-------TSCEEEEETTTCCEEEEECC-----C----CEEEEEEETTEEEEEET------TCCEEEEETTTCCEEEE
T ss_pred             Eec-------CcEEEEEECCCCcEEeeccC-----C----CCCCceEECCEEEEEcC------CCeEEEEECCCCcEEEe
Confidence            642       236899999876  475431     1    11223344666777653      2369999998876  76


Q ss_pred             ecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          225 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       225 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ...    . ..+...+.+..++.+|+...      ...++.||+.+++
T Consensus       303 ~~~----~-~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~  339 (376)
T 3q7m_A          303 QSD----L-LHRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGR  339 (376)
T ss_dssp             ECT----T-TTSCCCCCEEETTEEEEECT------TSEEEEEETTTCC
T ss_pred             ecc----c-CCCcccCCEEECCEEEEEeC------CCeEEEEECCCCc
Confidence            631    1 11222334556788777532      1258999998876

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.34  E-value=0.02  Score=52.10  Aligned_cols=199  Identities=12%  Similarity=-0.022  Sum_probs=117.3

Q ss_pred             eeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEE
Q 010847           86 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  165 (499)
Q Consensus        86 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y  165 (499)
                      ..+...++.||+..|..+.      +.++|+.+++-..-.    +|....+..++..+++||+....      .+.+++|
T Consensus        58 qGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~  121 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLFTW  121 (268)
T ss_dssp             EEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEEEE
T ss_pred             ceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEEEE
Confidence            4556668999999886432      899999998653332    33344556677788999998553      4679999


Q ss_pred             ECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcCcc-cEEEE
Q 010847          166 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGIT  243 (499)
Q Consensus       166 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~~  243 (499)
                      |+.+.+-..--+     .+-.+.+++. +++.||+.-|      .+.++.+|+.+.+-.. +.+ ...+.+... -.+..
T Consensus       122 D~~Tl~~~~ti~-----~~~eGwGLt~-Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          122 SGMPPQRERTTR-----YSGEGWGLCY-WNGKLVRSDG------GTMLTFHEPDGFALVGAVQV-KLRGQPVELINELEC  188 (268)
T ss_dssp             ETTTTEEEEEEE-----CSSCCCCEEE-ETTEEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEE
T ss_pred             ECCcCcEEEEEe-----CCCceeEEec-CCCEEEEECC------CCEEEEEcCCCCeEEEEEEe-CCCCcccccccccEE
Confidence            999876543222     1223455554 4667888765      3589999999876433 322 112222211 23455


Q ss_pred             ECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCC---C--CCCCCCceEEEEEc-CceEEEEEcCCCCCCCceE
Q 010847          244 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---P--LASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEV  317 (499)
Q Consensus       244 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~---p--~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~  317 (499)
                      .++.+|+--     ...+++.+.|+.++.-...-++....   +  ..........+..+ ..+.|||.|    +....+
T Consensus       189 ~dG~lyanv-----w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG----K~Wp~~  259 (268)
T 3nok_A          189 ANGVIYANI-----WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG----KLWPRL  259 (268)
T ss_dssp             ETTEEEEEE-----TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE----TTCSEE
T ss_pred             eCCEEEEEE-----CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC----CCCCce
Confidence            688888542     12457999999998754433332110   0  11122233334443 356788766    345566


Q ss_pred             EEEEC
Q 010847          318 FVMRL  322 (499)
Q Consensus       318 ~~~~~  322 (499)
                      |...+
T Consensus       260 ~ev~~  264 (268)
T 3nok_A          260 FEVRL  264 (268)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.28  E-value=0.024  Score=55.77  Aligned_cols=227  Identities=13%  Similarity=0.037  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  125 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  125 (499)
                      .++.+|+.++++..+......           .   .....+... ++.+++.++..      ..+.++|+.++......
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-----------~---~~~~~~~s~-~~~~~~~~~~~------~~i~~~d~~~g~~~~~~  160 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-----------F---QPKSVRFID-NTRLAIPLLED------EGMDVLDINSGQTVRLS  160 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-----------S---CBCCCEESS-SSEEEEEBTTS------SSEEEEETTTCCEEEEC
T ss_pred             EEEEECCCCCcceEEEEEcCC-----------C---CceEEEEeC-CCeEEEEeCCC------CeEEEEECCCCeEeeec
Confidence            688888887777666554210           0   111112222 67888877643      23999999998776543


Q ss_pred             cCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEEEEc
Q 010847          126 TSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFG  202 (499)
Q Consensus       126 ~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~G  202 (499)
                      ..+..+.......++.+  ++.+|+.|+.+      ..+.+||+.+.+....-..    ....-.+++... +..+|+.+
T Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          161 PPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             CCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEE
T ss_pred             CcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEe
Confidence            11111111112223333  57888877643      4689999988654332211    111112233333 45566665


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCC---CcceEEEEECCCCceEEecc
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN---GCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~---~~~~~~~~d~~~~~W~~l~~  278 (499)
                      +.+     +.+++||+.+......-     +....-.+++.. ++..+++++.....   .-..+++||+.+..-.....
T Consensus       231 ~~~-----~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~  300 (433)
T 3bws_A          231 WIS-----EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG  300 (433)
T ss_dssp             TTT-----TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred             cCC-----CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence            433     36999999887654421     111112233332 34444444432221   12368899998875443321


Q ss_pred             CCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          279 VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       279 ~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+.        .........+...+++.++.++    .+.+||+...
T Consensus       301 ~~~--------~~~~~~~~~~g~~l~~~~~~~~----~v~v~d~~~~  335 (433)
T 3bws_A          301 PPG--------NKRHIVSGNTENKIYVSDMCCS----KIEVYDLKEK  335 (433)
T ss_dssp             EEE--------CEEEEEECSSTTEEEEEETTTT----EEEEEETTTT
T ss_pred             CCC--------CcceEEECCCCCEEEEEecCCC----EEEEEECCCC
Confidence            111        1111222223346777766544    7888888654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.23  E-value=0.048  Score=53.80  Aligned_cols=222  Identities=14%  Similarity=0.163  Sum_probs=114.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      ..++.|+.+     ..+.+||..++.-...-..                  ......++..++.+++.|+.++      .
T Consensus       144 ~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~l~sg~~dg------~  194 (435)
T 1p22_A          144 QKIVSGLRD-----NTIKIWDKNTLECKRILTG------------------HTGSVLCLQYDERVIITGSSDS------T  194 (435)
T ss_dssp             SEEEEEESS-----SCEEEEESSSCCEEEEECC------------------CSSCEEEEECCSSEEEEEETTS------C
T ss_pred             CEEEEEeCC-----CeEEEEeCCCCeEEEEEcC------------------CCCcEEEEEECCCEEEEEcCCC------e
Confidence            445555532     3588999887764332211                  1122233444777777777543      3


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      +.++|+.++.-...-     ........++.+++..++.|+.+      ..+.+||+.+..-......  .........+
T Consensus       195 i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~--~~~~~~~v~~  261 (435)
T 1p22_A          195 VRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRV--LVGHRAAVNV  261 (435)
T ss_dssp             EEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEE--ECCCSSCEEE
T ss_pred             EEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeE--ecCCCCcEEE
Confidence            999999888654332     11122233444555666666643      3588999877543211110  0112222334


Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +.++++ .++.|+.+     ..+.+||+.+..-...-. +    ......++..++..++.|+.++     .+.+||+.+
T Consensus       262 ~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~-~----~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd~~~  325 (435)
T 1p22_A          262 VDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTLN-G----HKRGIACLQYRDRLVVSGSSDN-----TIRLWDIEC  325 (435)
T ss_dssp             EEEETT-EEEEEETT-----SEEEEEETTTCCEEEEEE-C----CSSCEEEEEEETTEEEEEETTS-----CEEEEETTT
T ss_pred             EEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEEc-C----CCCcEEEEEeCCCEEEEEeCCC-----eEEEEECCC
Confidence            444566 55556543     368899988765333110 1    1111223334566777776443     478899887


Q ss_pred             CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          271 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       271 ~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ..-..  .+...      ......+..++  .+++.|+.++    .+.++|+..
T Consensus       326 ~~~~~--~~~~h------~~~v~~~~~~~--~~l~sg~~dg----~i~vwd~~~  365 (435)
T 1p22_A          326 GACLR--VLEGH------EELVRCIRFDN--KRIVSGAYDG----KIKVWDLVA  365 (435)
T ss_dssp             CCEEE--EECCC------SSCEEEEECCS--SEEEEEETTS----CEEEEEHHH
T ss_pred             CCEEE--EEeCC------cCcEEEEEecC--CEEEEEeCCC----cEEEEECCC
Confidence            65322  11111      11222333333  3466677665    677788643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.085  Score=50.30  Aligned_cols=189  Identities=11%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEEC----CEEEEEcccCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG----TKLLILGGHYKKSS  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~----~~iyv~GG~~~~~~  106 (499)
                      .+++.|+.+     ..+.+||+...++..+.....                ......++.+.    +.+++.|+.++   
T Consensus        24 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~~l~s~~~dg---   79 (379)
T 3jrp_A           24 KRLATCSSD-----KTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSYDG---   79 (379)
T ss_dssp             SEEEEEETT-----SCEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCGGGCSEEEEEETTS---
T ss_pred             CEEEEEECC-----CcEEEEecCCCcceeeeEecC----------------CCCcEEEEEeCCCCCCCEEEEeccCC---
Confidence            556666643     248888888777776655432                11222333332    56667776543   


Q ss_pred             CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCcEEEEECCCCee-EEeeecCCC
Q 010847          107 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQTP  181 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~  181 (499)
                         .+.+||+.++.|..+...   ........++.+  +  +.+++.|+.+      ..+.+||+.+..- ......+  
T Consensus        80 ---~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--  145 (379)
T 3jrp_A           80 ---KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--  145 (379)
T ss_dssp             ---CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC--
T ss_pred             ---EEEEEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC--
Confidence               388999999988776532   211222233333  2  4566776643      3588888876632 1111111  


Q ss_pred             CCCCccceEEEE-c-------------CcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEE-
Q 010847          182 PAPRYDHSAALH-A-------------NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-  244 (499)
Q Consensus       182 p~~r~~~~~~~~-~-------------~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-  244 (499)
                        .......+.+ .             ++.+++.|+.+     ..+.+||+.+..  +..+....  .....-.+++.. 
T Consensus       146 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp  216 (379)
T 3jrp_A          146 --HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSP  216 (379)
T ss_dssp             --CTTCEEEEEECCCC----------CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECC
T ss_pred             --CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECC
Confidence              1111122222 2             34567777654     358888876543  43331101  011111223333 


Q ss_pred             C---CEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          245 D---ENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       245 ~---~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      +   +.+++.|+.++     .+.+||+.+.
T Consensus       217 ~~~~~~~l~s~~~dg-----~i~iwd~~~~  241 (379)
T 3jrp_A          217 TVLLRSYLASVSQDR-----TCIIWTQDNE  241 (379)
T ss_dssp             CCSSSEEEEEEETTS-----CEEEEEESST
T ss_pred             CCCCCCeEEEEeCCC-----EEEEEeCCCC
Confidence            3   56777776543     3677777665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.08  E-value=0.13  Score=47.97  Aligned_cols=186  Identities=16%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .++++|+.+     ..+.+||+.++..........                .......+.+  ++..++.|+.++     
T Consensus       110 ~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~dg-----  163 (337)
T 1gxr_A          110 CTLIVGGEA-----STLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSDG-----  163 (337)
T ss_dssp             SEEEEEESS-----SEEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred             CEEEEEcCC-----CcEEEEECCCCCcceeeeccc----------------CCCceEEEEECCCCCEEEEEeCCC-----
Confidence            455555532     358899999887655443321                1111222222  455666666432     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                       .+.+||+.++.....-   ....  .....+.+  ++..++.|+.+      ..+.+||+.+.+-.....   .  ...
T Consensus       164 -~v~~~d~~~~~~~~~~---~~~~--~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~~~  226 (337)
T 1gxr_A          164 -NIAVWDLHNQTLVRQF---QGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--TSQ  226 (337)
T ss_dssp             -CEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--SSC
T ss_pred             -cEEEEeCCCCceeeee---eccc--CceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--CCc
Confidence             3999999887644332   1111  11222233  45566666543      368999998876433321   1  111


Q ss_pred             cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEE
Q 010847          187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~  265 (499)
                      -.+++...++.++++|+.+     +.+.+||+.+..-..+.  .   ....-.+++.. ++.+++.|+.+     ..+.+
T Consensus       227 v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~  291 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH--L---HESCVLSLKFAYCGKWFVSTGKD-----NLLNA  291 (337)
T ss_dssp             EEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred             eEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEc--C---CccceeEEEECCCCCEEEEecCC-----CcEEE
Confidence            2223333455466666643     35899998876533321  1   11111122222 35666666643     25788


Q ss_pred             EECCCCceE
Q 010847          266 LNMTKLAWS  274 (499)
Q Consensus       266 ~d~~~~~W~  274 (499)
                      ||+.+..-.
T Consensus       292 ~~~~~~~~~  300 (337)
T 1gxr_A          292 WRTPYGASI  300 (337)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCeEE
Confidence            998877644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.05  E-value=0.1  Score=49.41  Aligned_cols=148  Identities=10%  Similarity=0.027  Sum_probs=73.9

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      .++.+|..++++..+......               ... ..++.. +++||+.+....    ...+++||+.++.++.+
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~---------------~~p-~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~   78 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT---------------QNP-TYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKL   78 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC---------------SCC-CCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc---------------CCc-ceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEe
Confidence            477888889998876543210               111 112222 566777654211    34599999988887766


Q ss_pred             ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECC-CCeeEEeee---cCCCCCCCc----cceEEEEcC
Q 010847          125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEV---TQTPPAPRY----DHSAALHAN  195 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~---~~~~p~~r~----~~~~~~~~~  195 (499)
                      ..... ......+.+..-++ .||+.+..      .+.+.+|++. +.....+..   .+..|.+|.    -+.++...+
T Consensus        79 ~~~~~-~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           79 NTVVA-PGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             EEEEE-ESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             eeeec-CCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence            53100 11111122222234 56665431      2457888874 334433332   122222111    223333345


Q ss_pred             cEEEEEcCCCCCCCCCcEEEEECC-CCceEe
Q 010847          196 RYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQ  225 (499)
Q Consensus       196 ~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~  225 (499)
                      +.+|+.+...     +.+++||+. ++....
T Consensus       152 g~l~v~~~~~-----~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A          152 NRLAVIDLGS-----DKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             SCEEEEETTT-----TEEEEEEECTTSCEEE
T ss_pred             CcEEEEeCCC-----CEEEEEEECCCCcEEE
Confidence            5566654322     468999987 555544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.05  E-value=0.28  Score=48.27  Aligned_cols=187  Identities=17%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ..+..++.|+.+      ..+.+||+.++.-...-.  .   ......++.+++..++.|+.+      ..+.+||+.+.
T Consensus       207 ~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~--~---~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~  269 (445)
T 2ovr_B          207 LHEKRVVSGSRD------ATLRVWDIETGQCLHVLM--G---HVAAVRCVQYDGRRVVSGAYD------FMVKVWDPETE  269 (445)
T ss_dssp             EETTEEEEEETT------SEEEEEESSSCCEEEEEE--C---CSSCEEEEEECSSCEEEEETT------SCEEEEEGGGT
T ss_pred             ecCCEEEEEeCC------CEEEEEECCCCcEEEEEc--C---CcccEEEEEECCCEEEEEcCC------CEEEEEECCCC
Confidence            344455666543      348899988876433221  1   111223444577777777653      35889998776


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  250 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  250 (499)
                      +-...-.     .......++.+++. .++.|+.+     +.+.+||+.+..-...- .+    ..........++..++
T Consensus       270 ~~~~~~~-----~~~~~v~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~l~  333 (445)
T 2ovr_B          270 TCLHTLQ-----GHTNRVYSLQFDGI-HVVSGSLD-----TSIRVWDVETGNCIHTL-TG----HQSLTSGMELKDNILV  333 (445)
T ss_dssp             EEEEEEC-----CCSSCEEEEEECSS-EEEEEETT-----SCEEEEETTTCCEEEEE-CC----CCSCEEEEEEETTEEE
T ss_pred             cEeEEec-----CCCCceEEEEECCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-cC----CcccEEEEEEeCCEEE
Confidence            5322211     11222333444455 56666654     35899998876533211 01    1111223333555666


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      .|+.++     .+.+||+.+..-...-..+.     .+......+..++ . +++.|+.++    .+.+||+...+
T Consensus       334 ~~~~dg-----~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~-~l~s~~~dg----~v~iwd~~~~~  393 (445)
T 2ovr_B          334 SGNADS-----TVKIWDIKTGQCLQTLQGPN-----KHQSAVTCLQFNK-N-FVITSSDDG----TVKLWDLKTGE  393 (445)
T ss_dssp             EEETTS-----CEEEEETTTCCEEEEECSTT-----SCSSCEEEEEECS-S-EEEEEETTS----EEEEEETTTCC
T ss_pred             EEeCCC-----eEEEEECCCCcEEEEEccCC-----CCCCCEEEEEECC-C-EEEEEeCCC----eEEEEECCCCc
Confidence            666443     47889987765332211110     1112233334444 3 455676654    78888887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.04  E-value=0.1  Score=51.33  Aligned_cols=224  Identities=10%  Similarity=0.050  Sum_probs=113.3

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      ..++++|+....-..+....                   .....+.+  +++.+++++....   ...++++|+.+++..
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~-------------------~~v~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSP-------------------QPLMSPAWSPDGSKLAYVTFESG---RSALVIQTLANGAVR  216 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEES-------------------SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEE
T ss_pred             ceEEEEcCCCCCCEEEeCCC-------------------CcceeeEEcCCCCEEEEEEecCC---CcEEEEEECCCCcEE
Confidence            57899998765544443211                   11122222  3444555554322   246999999999877


Q ss_pred             EeecCCCCCCCCcceEEEEE--CC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEE
Q 010847          123 VMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYL  198 (499)
Q Consensus       123 ~~~~~g~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l  198 (499)
                      .+.   ..+.   ...+..+  ++ .|++.+..+.    ...++.+|+.+.+...+...     . .......+ .++..
T Consensus       217 ~l~---~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~~spdg~~  280 (415)
T 2hqs_A          217 QVA---SFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG-----R-SNNTEPTWFPDSQN  280 (415)
T ss_dssp             EEE---CCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCC-----S-SCEEEEEECTTSSE
T ss_pred             Eee---cCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCC-----C-CcccceEECCCCCE
Confidence            665   2221   1222233  34 4655554332    34699999998877555321     1 11222333 34444


Q ss_pred             EEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          199 IVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       199 ~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      +++++...  ....+|.+|+.+..-..+..     ......+.+.. +++.+++++...  ....++++|+.+.....+.
T Consensus       281 l~~~s~~~--g~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~--g~~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          281 LAFTSDQA--GRPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNG--GQQHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             EEEEECTT--SSCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECS--SCEEEEEEETTTCCEEECC
T ss_pred             EEEEECCC--CCcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcC--CceEEEEEECCCCCEEEec
Confidence            44444221  12479999998876554421     11111122222 445555544322  1347899999998876653


Q ss_pred             cCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          278 SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       278 ~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      ...        .........++ .+ +++++..+ ....+|++|+....
T Consensus       352 ~~~--------~~~~~~~spdg-~~-l~~~s~~~-~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          352 STF--------LDETPSLAPNG-TM-VIYSSSQG-MGSVLNLVSTDGRF  389 (415)
T ss_dssp             CSS--------SCEEEEECTTS-SE-EEEEEEET-TEEEEEEEETTSCC
T ss_pred             CCC--------CcCCeEEcCCC-CE-EEEEEcCC-CccEEEEEECCCCc
Confidence            321        11122222233 34 44444322 13478899986543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.03  E-value=0.23  Score=46.81  Aligned_cols=226  Identities=11%  Similarity=-0.047  Sum_probs=115.0

Q ss_pred             cCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcE
Q 010847           44 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLC  121 (499)
Q Consensus        44 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  121 (499)
                      ...++++|+.+++-...-...                 .. .+.++..  ++.+|+.++.      ...+.+||+.+++-
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~-----------------~~-~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~  123 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND-----------------LK-PFGATINNTTQTLWFGNTV------NSAVTAIDAKTGEV  123 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-----------------SC-CCSEEEETTTTEEEEEETT------TTEEEEEETTTCCE
T ss_pred             CccEEEEcCCCCeEEEEEecC-----------------CC-cceEEECCCCCEEEEEecC------CCEEEEEeCCCCee
Confidence            457999999988754433321                 11 1223332  4568877653      23599999998875


Q ss_pred             EEeecCCCCCC-----CCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc
Q 010847          122 GVMETSGKVPV-----ARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       122 ~~~~~~g~~p~-----~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~  194 (499)
                      ......+....     +..-+.++..  ++.+|+.+...     ...+++||+.+.+-...-..    ....-+.++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~s~  194 (353)
T 3vgz_A          124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQN----TGKMSTGLALDS  194 (353)
T ss_dssp             EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECC----CCTTCCCCEEET
T ss_pred             EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecC----CCCccceEEECC
Confidence            33322111111     1111223332  34677765221     24599999988765433220    111122333333


Q ss_pred             -CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          195 -NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       195 -~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                       ++.+|+...      .+.+++||+.+.+-......+.........+++..  ++.+|+....     .+.+++||+.+.
T Consensus       195 dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~  263 (353)
T 3vgz_A          195 EGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNG  263 (353)
T ss_dssp             TTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTC
T ss_pred             CCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCC
Confidence             455666543      25789999988764332111111111122223333  3456666432     246899999887


Q ss_pred             ceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          272 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       272 ~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      ........+.  +       .......+..++|+.+..+    +.+.++|+...+
T Consensus       264 ~~~~~~~~~~--~-------~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~  305 (353)
T 3vgz_A          264 NILAKVAAPE--S-------LAVLFNPARNEAYVTHRQA----GKVSVIDAKSYK  305 (353)
T ss_dssp             CEEEEEECSS--C-------CCEEEETTTTEEEEEETTT----TEEEEEETTTTE
T ss_pred             cEEEEEEcCC--C-------ceEEECCCCCEEEEEECCC----CeEEEEECCCCe
Confidence            7544332221  1       1122333345677765443    378889986543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.02  E-value=0.21  Score=46.37  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=75.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.++.-...-     +........+.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~  180 (312)
T 4ery_A          118 QSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTAS  180 (312)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCC
Confidence            345666676543      3899999887643322     111111222333  45667777653      3589999987


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEE-ECCE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDEN  247 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~  247 (499)
                      .+....-...    .......+.+ .++..++.|+.+     +.+.+||+.+..-...- .+............. .++.
T Consensus       181 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          181 GQCLKTLIDD----DNPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             CCEEEEECCS----SCCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSC
T ss_pred             CceeeEEecc----CCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCc
Confidence            7643322111    1111122233 344456666543     46899999876533321 111111111122222 2456


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCce
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAW  273 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W  273 (499)
                      +++.|+.++     .+.+||+.+..-
T Consensus       251 ~l~sg~~dg-----~i~vwd~~~~~~  271 (312)
T 4ery_A          251 WIVSGSEDN-----LVYIWNLQTKEI  271 (312)
T ss_dssp             EEEECCTTS-----CEEEEETTTCCE
T ss_pred             EEEEECCCC-----EEEEEECCCchh
Confidence            666666433     478889877653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.01  E-value=0.075  Score=49.88  Aligned_cols=263  Identities=10%  Similarity=-0.003  Sum_probs=123.0

Q ss_pred             cccCCCCCeEEcccCC-CCCCccc---c-eEEEEcCCCCCcccCcEEEEEcCCCce-EEeeeCcccccCccccCCCCCCC
Q 010847            7 HLELPYDLWVTLPVSG-ARPSPRY---K-KLYIVGGSRNGRFLSDVQVFDLRSLAW-SNLRLETELDADKTEDSGLLEVL   80 (499)
Q Consensus         7 ~~~~~~~~W~~~~~~~-~~p~~r~---~-~l~~~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~~~~~p   80 (499)
                      .+|+.+++....-..+ ..|....   + .||+.+...     ..+++||+.++.. .......               .
T Consensus        24 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~---------------~   83 (331)
T 3u4y_A           24 FFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG---------------Q   83 (331)
T ss_dssp             EEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC---------------S
T ss_pred             EEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccC---------------C
Confidence            4677777775433222 1111111   1 466665522     3689999998875 2222211               0


Q ss_pred             CCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcCcCCCCCc
Q 010847           81 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKL  158 (499)
Q Consensus        81 ~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~  158 (499)
                      .++.+.+...-++.|| .+.....   ...+.+||+.++........+..|     +.++.. ++ .||+.+..      
T Consensus        84 ~~~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~-----~~~~~spdg~~l~~~~~~------  148 (331)
T 3u4y_A           84 SSMADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA-----VGIAISPNGNGLILIDRS------  148 (331)
T ss_dssp             SCCCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCTTE-----EEEEECTTSSCEEEEEET------
T ss_pred             CCccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCCCc-----cceEECCCCCEEEEEecC------
Confidence            1111122222245666 3322111   125999999988765543222211     333333 33 57776542      


Q ss_pred             cCc-EEEEECCCCe-eEEeeecCCCCCCCccceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCce---EecccCCCC
Q 010847          159 LND-VHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEW---SQPEIKGDL  232 (499)
Q Consensus       159 ~~~-v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W---~~~~~~~~~  232 (499)
                      .+. +.+|++.... ...... ...+....-..++...++ ++|+.+..     .+.+.+||+.+.+.   ...     .
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~-----~  217 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNA-----V  217 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEE-----E
T ss_pred             CCceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeee-----c
Confidence            234 7777765422 111100 001112222333333344 56766533     25699999987765   221     1


Q ss_pred             CCcCcccEEEEE-CCE-EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCC---CCCCCCCceEEEEEcCceEEEEEc
Q 010847          233 VTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---PLASEGLSVCSAIIEGEHHLVAFG  307 (499)
Q Consensus       233 p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~---p~~~~~~~~~~~~~~~~~~l~v~G  307 (499)
                      +.......++.. +++ +|+....     .+.++++|+.+.....+...+...   +.+...... .....+..+|++.+
T Consensus       218 ~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~v~~  291 (331)
T 3u4y_A          218 GTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQ-MALNKTETKLFISA  291 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCC-EEECTTSSEEEEEE
T ss_pred             cCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCcccccc-eEECCCCCEEEEec
Confidence            111111223333 334 6665431     235889999988875554332211   111111111 22233345677766


Q ss_pred             CCCCCCCceEEEEECCCC
Q 010847          308 GYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       308 G~~~~~~~~~~~~~~~~~  325 (499)
                      +..+    .+.+||+...
T Consensus       292 ~~~~----~v~v~d~~~~  305 (331)
T 3u4y_A          292 NISR----ELKVFTISGK  305 (331)
T ss_dssp             TTTT----EEEEEETTSC
T ss_pred             CCCC----cEEEEEecCC
Confidence            5433    7888998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.00  E-value=0.12  Score=50.94  Aligned_cols=182  Identities=14%  Similarity=0.193  Sum_probs=93.4

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+++.|+.+     ..+.+||+.++.-...-..                  ......++...+..++.|+.++      .
T Consensus       184 ~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~l~s~s~dg------~  234 (435)
T 1p22_A          184 RVIITGSSD-----STVRVWDVNTGEMLNTLIH------------------HCEAVLHLRFNNGMMVTCSKDR------S  234 (435)
T ss_dssp             SEEEEEETT-----SCEEEEESSSCCEEEEECC------------------CCSCEEEEECCTTEEEEEETTS------C
T ss_pred             CEEEEEcCC-----CeEEEEECCCCcEEEEEcC------------------CCCcEEEEEEcCCEEEEeeCCC------c
Confidence            555555533     3588899988764332111                  1122233344555666776533      3


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      +.+||+.+..-.....  ..........++.+++..++.|+.+      ..+.+||+.+.+-...-.  .   ......+
T Consensus       235 i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~--~---~~~~v~~  301 (435)
T 1p22_A          235 IAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLN--G---HKRGIAC  301 (435)
T ss_dssp             EEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEE--C---CSSCEEE
T ss_pred             EEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEc--C---CCCcEEE
Confidence            8889987765321110  0111112223334455566666543      358999998765432221  1   1122334


Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +.++++ +++.|+.+     +.+.+||+.++.-...- .+    ....-.++..++..++.|+.++     .+.+||+.+
T Consensus       302 ~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~-~~----h~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~  365 (435)
T 1p22_A          302 LQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL-EG----HEELVRCIRFDNKRIVSGAYDG-----KIKVWDLVA  365 (435)
T ss_dssp             EEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CC----CSSCEEEEECCSSEEEEEETTS-----CEEEEEHHH
T ss_pred             EEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-eC----CcCcEEEEEecCCEEEEEeCCC-----cEEEEECCC
Confidence            445555 66666654     36899999876533211 01    1111223344777777777543     467777644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.98  E-value=0.091  Score=50.04  Aligned_cols=148  Identities=10%  Similarity=0.099  Sum_probs=77.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .++++|+.+     ..+.+||+.++.|..+......               ...-.+++.. ++.+++.|+.++      
T Consensus        21 ~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~~~~~dg------   74 (372)
T 1k8k_C           21 TQIAICPNN-----HEVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTDR------   74 (372)
T ss_dssp             SEEEEECSS-----SEEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETTS------
T ss_pred             CEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCC---------------CCcccEEEEeCCCCEEEEEcCCC------
Confidence            667777643     3589999999987766654321               1111222222 455666666432      


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCCCCCc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRY  186 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p~~r~  186 (499)
                      .+.+||+.++.+.....   .........++.+  ++.+++.|+.+      ..+.+||+.+.. |...... ..+....
T Consensus        75 ~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~-~~~~~~~  144 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHI-KKPIRST  144 (372)
T ss_dssp             CEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEE-CTTCCSC
T ss_pred             eEEEEECCCCeeeeeEE---eecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeee-ecccCCC
Confidence            38889998888766542   1111112223333  45566666643      346777665543 3333221 1111111


Q ss_pred             cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC
Q 010847          187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  219 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  219 (499)
                      -.++....++.+++.|+.+     ..+.+||+.
T Consensus       145 i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  172 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCD-----FKCRIFSAY  172 (372)
T ss_dssp             EEEEEECTTSSEEEEEETT-----SCEEEEECC
T ss_pred             eeEEEEcCCCCEEEEEcCC-----CCEEEEEcc
Confidence            2222333345467777654     358888864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.03  Score=59.93  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--C--CEEEEEcccCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKSS  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~--~~iyv~GG~~~~~~  106 (499)
                      .+++.||.+     ..+.+||..++++..+.....                ......++.+  .  +.+++.|+.++   
T Consensus        22 ~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~----------------h~~~V~~l~~s~~~~~~~l~s~s~Dg---   77 (753)
T 3jro_A           22 KRLATCSSD-----KTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSYDG---   77 (753)
T ss_dssp             CCEEEEETT-----TEEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCTTSCSEEEEEETTS---
T ss_pred             CeEEEEECC-----CcEEEEecCCCCCccceeccC----------------CcCceEEEEecCCCCCCEEEEEeCCC---
Confidence            556666643     358889988888877765532                1222233333  2  56677777543   


Q ss_pred             CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847          107 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                         .+.+||+.++.|..+...   ........++.+  +  +.+++.|+.+      ..+.+||+.+.
T Consensus        78 ---~I~vwd~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~  133 (753)
T 3jro_A           78 ---KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKEN  133 (753)
T ss_dssp             ---CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSS
T ss_pred             ---eEEEEECCCCcccccccc---cCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecC
Confidence               388999999988776532   211222233333  2  5677777653      35888888765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.89  E-value=0.15  Score=49.64  Aligned_cols=220  Identities=11%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  125 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  125 (499)
                      .+.+||+.++.....-..                  ......++..++.+++.|+.+      ..+.+||+.+..-....
T Consensus       157 ~i~iwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAG------------------HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             CEEEEETTTCCEEEEECC------------------CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEE
T ss_pred             eEEEEECcCCeEEEEecC------------------CCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeE
Confidence            578888887754332211                  112223334456667777653      34889998744322221


Q ss_pred             cCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEEEEc
Q 010847          126 TSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFG  202 (499)
Q Consensus       126 ~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~G  202 (499)
                      .. ...   ....++.+  ++.+++.|+.+      +.+.+||+.+..-...-.  .  ....-.+++... +..+++.|
T Consensus       213 ~~-~~~---~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          213 LQ-GHS---SEVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EE-CCS---SCEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEE
T ss_pred             Ec-CCC---CCeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEe
Confidence            11 111   11222223  45677777653      358999998754332211  1  111112222222 33467766


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CC-EEEEEeCCCCCCCcceEEEEECCCCceEEeccCC
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~  280 (499)
                      |..   .-..+.+||+.+......-. .    ...-.+++.. ++ .+++.+|..+.    .+.+||+.+.....+..+.
T Consensus       279 ~gs---~d~~i~i~d~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~g~~dg----~i~v~~~~~~~~~~~~~~~  346 (401)
T 4aez_A          279 GGT---MDKQIHFWNAATGARVNTVD-A----GSQVTSLIWSPHSKEIMSTHGFPDN----NLSIWSYSSSGLTKQVDIP  346 (401)
T ss_dssp             CCT---TTCEEEEEETTTCCEEEEEE-C----SSCEEEEEECSSSSEEEEEECTTTC----EEEEEEEETTEEEEEEEEE
T ss_pred             cCC---CCCEEEEEECCCCCEEEEEe-C----CCcEEEEEECCCCCeEEEEeecCCC----cEEEEecCCccceeEEEec
Confidence            421   12469999988765433211 1    1111122222 33 44444453322    5788888877666543332


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          281 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       281 ~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      ...      .....+....+..+++.||.++    .+.++++...
T Consensus       347 ~h~------~~v~~~~~s~dg~~l~s~~~dg----~i~iw~~~~~  381 (401)
T 4aez_A          347 AHD------TRVLYSALSPDGRILSTAASDE----NLKFWRVYDG  381 (401)
T ss_dssp             CCS------SCCCEEEECTTSSEEEEECTTS----EEEEEECCC-
T ss_pred             CCC------CCEEEEEECCCCCEEEEEeCCC----cEEEEECCCC
Confidence            211      1111222322223455566654    6888888654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.85  E-value=0.32  Score=45.74  Aligned_cols=196  Identities=11%  Similarity=0.054  Sum_probs=100.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCC--CCCccceeEEEE--CCEEEEEcccCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEV--LPPMSDHCMVKW--GTKLLILGGHYKKSS  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~--p~~r~~~s~~~~--~~~iyv~GG~~~~~~  106 (499)
                      .+|+.++.+     +.+.+||+.+++-...-.....          ..+  ..+..-+.++..  ++.+|+.+...    
T Consensus       102 ~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----  162 (353)
T 3vgz_A          102 TLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDR----------KRTEEVRPLQPRELVADDATNTVYISGIGK----  162 (353)
T ss_dssp             EEEEEETTT-----TEEEEEETTTCCEEEEEESCCC----------CCCSSCCCCEEEEEEEETTTTEEEEEEESS----
T ss_pred             EEEEEecCC-----CEEEEEeCCCCeeEEEEecCCC----------ccccccCCCCCceEEECCCCCEEEEEecCC----
Confidence            577666532     3689999998875433322110          000  001112233332  46677766321    


Q ss_pred             CCceEEEEECCCCcEEEeec-CCCCCCCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCC
Q 010847          107 DSMIVRFIDLETNLCGVMET-SGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  183 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~~~~-~g~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~  183 (499)
                       ...++++|+.+++-..... .+..|     +.++.  .++.||+...       .+.+++||+.+.+-......+... 
T Consensus       163 -~~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~-  228 (353)
T 3vgz_A          163 -ESVIWVVDGGNIKLKTAIQNTGKMS-----TGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDG-  228 (353)
T ss_dssp             -SCEEEEEETTTTEEEEEECCCCTTC-----CCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSS-
T ss_pred             -CceEEEEcCCCCceEEEecCCCCcc-----ceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCC-
Confidence             2349999999886544331 11111     22222  2346776543       246889999887654333222111 


Q ss_pred             CCccc-eEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCC
Q 010847          184 PRYDH-SAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG  259 (499)
Q Consensus       184 ~r~~~-~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~  259 (499)
                      +.... .++... ++.+|+.+..     .+.+++||+.+.+....-.   .+.+   ..++..  ++.+|+.+..+    
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~---~~~~---~~~~~s~dg~~l~v~~~~~----  293 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVA---APES---LAVLFNPARNEAYVTHRQA----  293 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEE---CSSC---CCEEEETTTTEEEEEETTT----
T ss_pred             CCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEE---cCCC---ceEEECCCCCEEEEEECCC----
Confidence            12222 233333 4556665432     3579999998877544211   1222   123333  34577765422    


Q ss_pred             cceEEEEECCCCceEE
Q 010847          260 CQETIVLNMTKLAWSI  275 (499)
Q Consensus       260 ~~~~~~~d~~~~~W~~  275 (499)
                       +.+.++|+.+.....
T Consensus       294 -~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          294 -GKVSVIDAKSYKVVK  308 (353)
T ss_dssp             -TEEEEEETTTTEEEE
T ss_pred             -CeEEEEECCCCeEEE
Confidence             368999998876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.84  E-value=0.097  Score=47.69  Aligned_cols=229  Identities=9%  Similarity=0.006  Sum_probs=111.6

Q ss_pred             cCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCC-CcE
Q 010847           44 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLET-NLC  121 (499)
Q Consensus        44 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W  121 (499)
                      ...++++|+.++....+....                 .. -.+++.. +++.+++++       ...++++|+.+ +..
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~-----------------~~-v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTP-----------------EL-FEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEES-----------------SC-CEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSC
T ss_pred             ceeEEEEeCCCCceeeeccCC-----------------cc-eEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCc
Confidence            457999999998877654421                 11 1122221 445555554       23599999998 776


Q ss_pred             EEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEE
Q 010847          122 GVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLI  199 (499)
Q Consensus       122 ~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~  199 (499)
                      ..+.   ..+. .........-+++.+++++....  ....++.+++.+.....+...    ..  ...+.... +..|+
T Consensus        76 ~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~  144 (297)
T 2ojh_A           76 EKVD---TGFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFT  144 (297)
T ss_dssp             EECC---CTTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEE
T ss_pred             eEec---cccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecC----CC--ccceEECCCCCEEE
Confidence            6554   2221 11111222234555555543222  245789999887765544321    11  22222333 34455


Q ss_pred             EEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          200 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       200 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      +.++.++   ...+|.+|+.+.....+..   .+  .....++.. ++..+++++...  ....+|.+++.......+..
T Consensus       145 ~~~~~~~---~~~l~~~~~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          145 YCGIRDQ---VFDIYSMDIDSGVETRLTH---GE--GRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EEEEETT---EEEEEEEETTTCCEEECCC---SS--SCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCC
T ss_pred             EEECCCC---ceEEEEEECCCCcceEccc---CC--CccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEec
Confidence            4444322   1367888887776655421   11  111122222 344444433211  23478888887777665543


Q ss_pred             CCCCCCCCCCCCceEEEEE-cCceEEEEEcCCCCC------CCceEEEEECCCCCC
Q 010847          279 VKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGK------YNNEVFVMRLKPRDI  327 (499)
Q Consensus       279 ~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~------~~~~~~~~~~~~~~W  327 (499)
                      ..         .....+.. .+..+|++.+...+.      ....++++|+.....
T Consensus       215 ~~---------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 SA---------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CS---------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CC---------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            21         11222222 233444443322111      224689999876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.83  E-value=0.21  Score=47.19  Aligned_cols=234  Identities=14%  Similarity=0.134  Sum_probs=109.4

Q ss_pred             CccccCCCCCeEEcccCC--CCCCc----ccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCC
Q 010847            5 SWHLELPYDLWVTLPVSG--ARPSP----RYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   78 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~~--~~p~~----r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      .|.+|+.++++..+....  ..|..    ..++||+.+...   ....+++||+.+++++.+......            
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~------------   84 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAP------------   84 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEE------------
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecC------------
Confidence            577888888887643211  12211    123677665321   124689999988888776653210            


Q ss_pred             CCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECC-CCcEEEee---cCCCCCCCCc----ceEEEE-ECCEEE
Q 010847           79 VLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVME---TSGKVPVARG----GHSVTL-VGSRLI  147 (499)
Q Consensus        79 ~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~---~~g~~p~~r~----~~~~~~-~~~~ly  147 (499)
                         ...-..++..  +..||+.+..      ...+.+||+. ++....+.   ..+..|.+|.    -++++. -++++|
T Consensus        85 ---~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           85 ---GTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             ---SCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             ---CCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence               1111222222  4457766532      2347778874 34444333   1222222111    122222 245677


Q ss_pred             EEcCcCCCCCccCcEEEEECC-CCeeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECC--CCce
Q 010847          148 IFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQ--TNEW  223 (499)
Q Consensus       148 v~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~--~~~W  223 (499)
                      +.+..      .+.+.+|++. +.+...+.... .+....-..++...+ +++|+.+..+     +.+.+|++.  ++.+
T Consensus       156 v~~~~------~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          156 VIDLG------SDKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAF  223 (347)
T ss_dssp             EEETT------TTEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEE
T ss_pred             EEeCC------CCEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCce
Confidence            65432      3468999987 56555443211 111111112333334 4577755432     345556544  5666


Q ss_pred             EecccCCCCCCc---CcccEEEEE--CC-EEEEEeCCCCCCCcceEEEEECC-CCceEEeccC
Q 010847          224 SQPEIKGDLVTG---RAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSV  279 (499)
Q Consensus       224 ~~~~~~~~~p~~---r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~~-~~~W~~l~~~  279 (499)
                      ..+......+..   ......+.+  ++ .+|+.+..     .+.+.+||+. .+.+..+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~  281 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQI  281 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEE
Confidence            543321222221   112222333  33 46666542     2357788875 3345554433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.82  E-value=0.057  Score=53.09  Aligned_cols=199  Identities=10%  Similarity=0.003  Sum_probs=105.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE---CCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~---~~~iyv~GG~~~~~~~  107 (499)
                      +.+++++.+++  ...++++|+.+++...+....                  . ....+.+   +..|++.+...+    
T Consensus       191 ~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~------------------~-~~~~~~~spdg~~la~~~~~~g----  245 (415)
T 2hqs_A          191 SKLAYVTFESG--RSALVIQTLANGAVRQVASFP------------------R-HNGAPAFSPDGSKLAFALSKTG----  245 (415)
T ss_dssp             SEEEEEECTTS--SCEEEEEETTTCCEEEEECCS------------------S-CEEEEEECTTSSEEEEEECTTS----
T ss_pred             CEEEEEEecCC--CcEEEEEECCCCcEEEeecCC------------------C-cccCEEEcCCCCEEEEEEecCC----
Confidence            44455544322  247899999998876554321                  1 1222233   345665554332    


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      ...++.+|+.++....+.   ..+.   ......+  +++.+++++...   ....++.+|+.+..-..+...     ..
T Consensus       246 ~~~i~~~d~~~~~~~~l~---~~~~---~~~~~~~spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~-----~~  311 (415)
T 2hqs_A          246 SLNLYVMDLASGQIRQVT---DGRS---NNTEPTWFPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWE-----GS  311 (415)
T ss_dssp             SCEEEEEETTTCCEEECC---CCSS---CEEEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCS-----SS
T ss_pred             CceEEEEECCCCCEEeCc---CCCC---cccceEECCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecC-----CC
Confidence            345999999998876554   2111   1222233  444444433211   134699999988775444321     11


Q ss_pred             ccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEE
Q 010847          186 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI  264 (499)
Q Consensus       186 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~  264 (499)
                      ....++...++..+++++....  ...++++|+.+.....+..  .   . ...+.+.. ++..+++++.+..  ...++
T Consensus       312 ~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~--~---~-~~~~~~~spdg~~l~~~s~~~~--~~~l~  381 (415)
T 2hqs_A          312 QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSS--T---F-LDETPSLAPNGTMVIYSSSQGM--GSVLN  381 (415)
T ss_dssp             EEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCC--S---S-SCEEEEECTTSSEEEEEEEETT--EEEEE
T ss_pred             cccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecC--C---C-CcCCeEEcCCCCEEEEEEcCCC--ccEEE
Confidence            2222222234434555443211  3479999999988766532  1   1 12222222 4566666653322  34789


Q ss_pred             EEECCCCceEEecc
Q 010847          265 VLNMTKLAWSILTS  278 (499)
Q Consensus       265 ~~d~~~~~W~~l~~  278 (499)
                      ++|+.......++.
T Consensus       382 ~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          382 LVSTDGRFKARLPA  395 (415)
T ss_dssp             EEETTSCCEEECCC
T ss_pred             EEECCCCcEEEeeC
Confidence            99998877776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.82  E-value=0.091  Score=56.35  Aligned_cols=217  Identities=9%  Similarity=0.010  Sum_probs=118.1

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcc--------cceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCC
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPR--------YKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   75 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r--------~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~   75 (499)
                      +-+.||+.++++..++..+ .+...        .+.|++- .      .+.+++||+.++.|........          
T Consensus       428 Gl~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwig-t------~~Gl~~~~~~~~~~~~~~~~~~----------  489 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEK-NELLDVRVFYEDKNKKIWIG-T------HAGVFVIDLASKKVIHHYDTSN----------  489 (781)
T ss_dssp             EEEEECSSSCEEEECCSTT-TCCCCEEEEEECTTSEEEEE-E------TTEEEEEESSSSSCCEEECTTT----------
T ss_pred             CEEEEcCCCCcEEEeccCC-CCCCeEEEEEECCCCCEEEE-E------CCceEEEeCCCCeEEecccCcc----------
Confidence            3467888888888776321 11111        1133332 1      1468999999999987754321          


Q ss_pred             CCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcC
Q 010847           76 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGED  153 (499)
Q Consensus        76 ~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~  153 (499)
                       ...+... -.+++.. ++.|++.. ..      ..+++||+.++.+........+|.... .+++. -++.|++...  
T Consensus       490 -~~~~~~~-i~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--  557 (781)
T 3v9f_A          490 -SQLLENF-VRSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--  557 (781)
T ss_dssp             -SSCSCSC-EEEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET--
T ss_pred             -cccccce-eEEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC--
Confidence             0001111 1222222 46677643 11      129999999999988764222332211 12222 2467777532  


Q ss_pred             CCCCccCcE-EEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCC
Q 010847          154 RSRKLLNDV-HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  232 (499)
Q Consensus       154 ~~~~~~~~v-~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  232 (499)
                            +.+ ++||+.+.++........+|... ..+++...++.|++.+.       +-+.+||+.+.++........+
T Consensus       558 ------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl  623 (781)
T 3v9f_A          558 ------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNI  623 (781)
T ss_dssp             ------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTC
T ss_pred             ------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCc
Confidence                  236 88999988887776543344333 23444444666777542       3589999999988886543334


Q ss_pred             CCcCccc-EEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          233 VTGRAGH-AGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       233 p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +...+.. +++...+..+.|||.+      -+..||+..
T Consensus       624 ~~~~f~~~~~~~~~~G~l~~g~~~------Gl~~f~p~~  656 (781)
T 3v9f_A          624 PQGSFISGCVTKDHNGLIYFGSIN------GLCFFNPDI  656 (781)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEETT------EEEEECSCC
T ss_pred             cccccccCceEECCCCEEEEECCC------ceEEEChhh
Confidence            4443332 3333334445556633      255666643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.81  E-value=0.65  Score=48.77  Aligned_cols=195  Identities=13%  Similarity=-0.002  Sum_probs=94.6

Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC-eeEEeeecCCCCCC
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAP  184 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~p~~  184 (499)
                      ...++++|+.++.-..+..   ..........+.+  +++.++++..+... ....++.+|+.+. ....+..... +..
T Consensus       234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~-~~~  308 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETD-KHY  308 (706)
T ss_dssp             EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEC-SSC
T ss_pred             eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccC-CCe
Confidence            3569999999887655531   1111112222333  44434443333221 2457999999988 7766643111 100


Q ss_pred             C-ccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CC-EEEEEeCCCCCC
Q 010847          185 R-YDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNN  258 (499)
Q Consensus       185 r-~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~  258 (499)
                      . ....++...  ++.+++.+..++   ...+|.+|........+.. +.    ........+  ++ .+++.+. ....
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-~~----~~v~~~~~~spdg~~l~~~~~-~~~~  379 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-GE----WEVTNFAGFDPKGTRLYFEST-EASP  379 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-SS----SCEEEEEEECTTSSEEEEEES-SSCT
T ss_pred             ECccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-CC----eEEEeeeEEcCCCCEEEEEec-CCCC
Confidence            0 011223334  555555554332   3578888877766666531 11    111121223  33 4555443 3322


Q ss_pred             CcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          259 GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       259 ~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      ....+|.+|+.+.....+....        +........++ .+| ++..........++++|+....
T Consensus       380 ~~~~l~~~d~~~~~~~~l~~~~--------~~~~~~~spdg-~~l-~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGGKTKDLTPES--------GMHRTQLSPDG-SAI-IDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCCCCEESCCSS--------SEEEEEECTTS-SEE-EEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCCCceeccCCC--------ceEEEEECCCC-CEE-EEEecCCCCCcEEEEEECCCCe
Confidence            2457899999887766654211        11112222233 333 3333333334568888876543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.79  E-value=0.3  Score=52.40  Aligned_cols=188  Identities=9%  Similarity=-0.012  Sum_probs=102.3

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      ..+++||+.++.+.......            .. .+...-.+++.. ++.|++... .       .+++||+.++.|..
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~------------~~-l~~~~v~~i~~d~~g~lwigt~-~-------Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRN------------SQ-LVNENVYAILPDGEGNLWLGTL-S-------ALVRFNPEQRSFTT  485 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTT------------SC-CSCSCEEEEEECSSSCEEEEES-S-------CEEEEETTTTEEEE
T ss_pred             CceeEEeCCCCcEEEeecCC------------CC-cCCCeeEEEEECCCCCEEEEec-C-------ceeEEeCCCCeEEE
Confidence            35899999999988775421            00 111112222222 466776432 1       29999999999988


Q ss_pred             eecCCCCCCCC--cceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCC-CC-CccceEEEEcCcE
Q 010847          124 METSGKVPVAR--GGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP-RYDHSAALHANRY  197 (499)
Q Consensus       124 ~~~~g~~p~~r--~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~-r~~~~~~~~~~~~  197 (499)
                      ..... .+...  ....++..  ++.|++...        +.+++||+.+..+ ........+ .+ ..-.+++...++.
T Consensus       486 ~~~~~-~~~~~~~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          486 IEKEK-DGTPVVSKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             CCBCT-TCCBCCCCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred             ccccc-cccccCCceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC
Confidence            75321 11111  11112222  457777432        2489999988888 443110001 11 1112222224565


Q ss_pred             EEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEe
Q 010847          198 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       198 l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l  276 (499)
                      |++...       +-+++||+.+.++........+|... ..+++.. ++.+++.+.       +-+.+||+.+..+...
T Consensus       556 lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~  620 (795)
T 4a2l_A          556 IWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNF  620 (795)
T ss_dssp             EEEEES-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEE
T ss_pred             EEEEeC-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEc
Confidence            666432       24899999999888764433344332 2233332 356776542       2478999999988766


Q ss_pred             cc
Q 010847          277 TS  278 (499)
Q Consensus       277 ~~  278 (499)
                      ..
T Consensus       621 ~~  622 (795)
T 4a2l_A          621 TE  622 (795)
T ss_dssp             CG
T ss_pred             CC
Confidence            43

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.76  E-value=0.18  Score=47.20  Aligned_cols=236  Identities=11%  Similarity=0.033  Sum_probs=105.6

Q ss_pred             CcEEEEEcC--CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCc
Q 010847           45 SDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL  120 (499)
Q Consensus        45 ~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  120 (499)
                      ..+.+|++.  ++++..+......               . .-..++..  ++.||+.+..      ...+.+||+..+.
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~  117 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALP---------------G-SLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGL  117 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECS---------------S-CCSEEEECTTSSEEEEEETT------TTEEEEEEEETTE
T ss_pred             CeEEEEEecCCCCceeeccccccC---------------C-CCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCc
Confidence            357777766  7888776554210               1 11222222  3456665432      2347888874332


Q ss_pred             -EEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC-CeeEEee--ecCCCCCCCccceEEEEc
Q 010847          121 -CGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVE--VTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       121 -W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~--~~~~~p~~r~~~~~~~~~  194 (499)
                       ...+......+   .-+.++..  +..||+.+..      .+.+.+||+.+ .+...+.  .. ..+....-..++...
T Consensus       118 ~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p  187 (343)
T 1ri6_A          118 PVGVVDVVEGLD---GCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEEEECCCT---TBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECT
T ss_pred             cccccccccCCC---CceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECC
Confidence             22222111111   12222222  3367665422      24689999987 6665433  11 111111111233333


Q ss_pred             -CcEEEEEcCCCCCCCCCcEEEEECC--CCceEecccCCCCCCc---Cccc-EEEEE--CCEEEEEeCCCCCCCcceEEE
Q 010847          195 -NRYLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDLVTG---RAGH-AGITI--DENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       195 -~~~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~---r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~  265 (499)
                       +.++|+.+..     .+.+.+||+.  +..+..+......+..   .... .++..  +..+|+.+..+     ..+.+
T Consensus       188 dg~~l~~~~~~-----~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v  257 (343)
T 1ri6_A          188 NEQYAYCVNEL-----NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITV  257 (343)
T ss_dssp             TSSEEEEEETT-----TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEE
T ss_pred             CCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEE
Confidence             3456666533     2468899884  4444332211112221   1112 23332  23566555322     35778


Q ss_pred             EECC--CCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCCCC
Q 010847          266 LNMT--KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  330 (499)
Q Consensus       266 ~d~~--~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~  330 (499)
                      ||+.  +..+..+...+...      .........+..+|++.++.++  .-.+|.+|.....+...
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~--~v~v~~~d~~~g~~~~~  316 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTET------QPRGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLHEK  316 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSS------SCCCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCceEEeeeecCCC------ccceEEECCCCCEEEEecCCCC--eEEEEEEcCCCceeeEc
Confidence            8876  55666554433211      1111222233456776554333  22344456656555443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.75  E-value=0.35  Score=44.95  Aligned_cols=186  Identities=16%  Similarity=0.053  Sum_probs=93.5

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++..++.|+.+      ..+.+||+.+........   ..........+.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence            35556666542      349999999887544431   1111111222222  45566666643      3589999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  247 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  247 (499)
                      .+....-.  .   .......+.+ .++..++.|+.+     ..+.+||+.+..-.....   .  ...-.+++.. ++.
T Consensus       173 ~~~~~~~~--~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~---~--~~~v~~~~~s~~~~  237 (337)
T 1gxr_A          173 QTLVRQFQ--G---HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD---F--TSQIFSLGYCPTGE  237 (337)
T ss_dssp             TEEEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE---C--SSCEEEEEECTTSS
T ss_pred             Cceeeeee--c---ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeec---C--CCceEEEEECCCCC
Confidence            76543321  1   1112222333 344466666643     468999988765433211   1  1111222322 455


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+++|+.++     .+.+||+.+..-..+...         ......+....+..+++.|+.++    .+.+||+...
T Consensus       238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~  297 (337)
T 1gxr_A          238 WLAVGMESS-----NVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG  297 (337)
T ss_dssp             EEEEEETTS-----CEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred             EEEEEcCCC-----cEEEEECCCCCeEEEcCC---------ccceeEEEECCCCCEEEEecCCC----cEEEEECCCC
Confidence            666665332     488899887654333221         11222333333223455566554    6888887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.67  E-value=0.4  Score=44.41  Aligned_cols=227  Identities=14%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+++.|+.+     ..+.+||..++.....-..                  .......+.+  ++.+++.|+.+      
T Consensus        36 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~s~~~d------   86 (312)
T 4ery_A           36 EWLASSSAD-----KLIKIWGAYDGKFEKTISG------------------HKLGISDVAWSSDSNLLVSASDD------   86 (312)
T ss_dssp             SEEEEEETT-----SCEEEEETTTCCEEEEECC------------------CSSCEEEEEECTTSSEEEEEETT------
T ss_pred             CEEEEeeCC-----CeEEEEeCCCcccchhhcc------------------CCCceEEEEEcCCCCEEEEECCC------
Confidence            455555533     2478889888776543221                  1112222333  45666677643      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      ..+.+||+.++.-...-. +  .  .....++.+  ++.+++.|+.+      ..+.+||+.+.+-...-.     ....
T Consensus        87 ~~i~vwd~~~~~~~~~~~-~--~--~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~-----~~~~  150 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLK-G--H--SNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLP-----AHSD  150 (312)
T ss_dssp             SEEEEEETTTCCEEEEEE-C--C--SSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEEC-----CCSS
T ss_pred             CEEEEEECCCCcEEEEEc-C--C--CCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEec-----CCCC
Confidence            348999998876433221 1  1  111122222  34566667654      358999998765432211     1111


Q ss_pred             cceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceE
Q 010847          187 DHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  263 (499)
Q Consensus       187 ~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~  263 (499)
                      ....+.+ .++.+++.|+.+     ..+.+||+.+......-...  .  ......+.+  ++..++.|+.++     .+
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~l~~~~~d~-----~i  216 (312)
T 4ery_A          151 PVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDD--D--NPPVSFVKFSPNGKYILAATLDN-----TL  216 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCS--S--CCCEEEEEECTTSSEEEEEETTT-----EE
T ss_pred             cEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEecc--C--CCceEEEEECCCCCEEEEEcCCC-----eE
Confidence            1222333 344467777654     35899998876543311001  0  011112222  445666665432     57


Q ss_pred             EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+||+.+..-...  +..... ... .........+ ..+++.|+.++    .+.++|+...
T Consensus       217 ~iwd~~~~~~~~~--~~~~~~-~~~-~~~~~~~~~~-~~~l~sg~~dg----~i~vwd~~~~  269 (312)
T 4ery_A          217 KLWDYSKGKCLKT--YTGHKN-EKY-CIFANFSVTG-GKWIVSGSEDN----LVYIWNLQTK  269 (312)
T ss_dssp             EEEETTTTEEEEE--ECSSCC-SSS-CCCEEEECSS-SCEEEECCTTS----CEEEEETTTC
T ss_pred             EEEECCCCcEEEE--EEecCC-ceE-EEEEEEEeCC-CcEEEEECCCC----EEEEEECCCc
Confidence            8899887653322  111110 001 1111122223 34566677665    6888888654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.64  E-value=0.22  Score=46.76  Aligned_cols=158  Identities=15%  Similarity=0.077  Sum_probs=77.3

Q ss_pred             ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCC
Q 010847           30 KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  107 (499)
Q Consensus        30 ~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~  107 (499)
                      +.+|+.++.     .+.+.++|+.+++....-..+.                ....+.++..  ++.+|+.+..      
T Consensus        11 ~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~~~v~~~~------   63 (349)
T 1jmx_B           11 HEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPD----------------KFGPGTAMMAPDNRTAYVLNNH------   63 (349)
T ss_dssp             CEEEEEEET-----TTEEEEEETTTTEEEEEEECSS----------------CCSSCEEEECTTSSEEEEEETT------
T ss_pred             CEEEEEeCC-----CCeEEEEECCCCcEEEEEecCC----------------CCCCceeEECCCCCEEEEEeCC------
Confidence            367777764     2468999999987654333211                0011223322  3467777632      


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCC--CCcceEEEEE-CC-EEEEEcCc--CCCCC---ccCcEEEEECCCCeeEEeeec
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPV--ARGGHSVTLV-GS-RLIIFGGE--DRSRK---LLNDVHFLDLETMTWDAVEVT  178 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~--~r~~~~~~~~-~~-~lyv~GG~--~~~~~---~~~~v~~yd~~t~~W~~~~~~  178 (499)
                      ...+++||+.+++-......+..|.  ...-+.++.. ++ .||+.+..  .....   ..+.+++||+.+++-......
T Consensus        64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence            2459999999887654332111111  1111222322 34 55554421  00000   125799999987432111111


Q ss_pred             CCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE
Q 010847          179 QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       179 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  224 (499)
                      ...  +..-.+++...++.+|+.++        +++++|+.+.+-.
T Consensus       144 ~~~--~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~  179 (349)
T 1jmx_B          144 FPM--PRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYT  179 (349)
T ss_dssp             EEC--CSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEE
T ss_pred             ccC--CCcccceeECCCCcEEEccC--------cEEEEeCCCCcee
Confidence            111  22223333334555666432        4889998776643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.63  E-value=0.88  Score=47.78  Aligned_cols=124  Identities=14%  Similarity=0.053  Sum_probs=69.1

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCC--CCC---CCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK--VPV---ARGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~--~p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +.++.++.||+...       ...++.+|..|++  |+.-.....  .+.   .....+.+..+++||+...       .
T Consensus        72 ~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------d  137 (677)
T 1kb0_A           72 TPVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------D  137 (677)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------T
T ss_pred             CCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------C
Confidence            34567999999865       2349999998874  876541100  000   0112344557888887632       2


Q ss_pred             CcEEEEECCCCe--eEEeeecCCCCCC-CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          160 NDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       160 ~~v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ..++++|..|++  |+.-... ..+.. ....+.++. ++.+|+..+.........++.||..+++  |+.-
T Consensus       138 g~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          138 GRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             SEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            469999998774  8754210 11111 111122333 6655553332222234579999998876  8764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.60  E-value=0.58  Score=45.30  Aligned_cols=217  Identities=15%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      .+.+||..++.........                 ......++.+  ++.+++.|+.++      .+.+||+.++....
T Consensus       114 ~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~  170 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLR  170 (401)
T ss_dssp             EEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred             eEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEE
Confidence            5899999998876655431                 1112223333  455666666432      38999998876543


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      .-   .  .......++.+++.+++.|+.+      ..+.+||+.+..-......+    .......+.+ .++.+++.|
T Consensus       171 ~~---~--~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          171 TM---A--GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG----HSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             EE---C--CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEE
T ss_pred             Ee---c--CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC----CCCCeeEEEEcCCCCEEEEE
Confidence            32   1  1112223344466677777653      36889998743321111111    1112222233 355567777


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCC
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~  280 (499)
                      +.+     +.+.+||+.+..-...-  .  .....-.+++..  +..+++.||+..+   ..+.+||+.+..-...-...
T Consensus       236 ~~d-----~~v~iwd~~~~~~~~~~--~--~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          236 GND-----NVVQIWDARSSIPKFTK--T--NHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             ETT-----SCEEEEETTCSSEEEEE--C--CCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEECS
T ss_pred             eCC-----CeEEEccCCCCCccEEe--c--CCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeCC
Confidence            654     36899998875433211  1  111112233333  3467777753222   25889998876543322111


Q ss_pred             CCCCCCCCCCceEEEEE-cCceEEEEEcC-CCCCCCceEEEEECCCC
Q 010847          281 GRNPLASEGLSVCSAII-EGEHHLVAFGG-YNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       281 ~~~p~~~~~~~~~~~~~-~~~~~l~v~GG-~~~~~~~~~~~~~~~~~  325 (499)
                               .....+.. .+...+++.+| .++    .+.+||+...
T Consensus       304 ---------~~v~~~~~s~~~~~l~~~~g~~dg----~i~v~~~~~~  337 (401)
T 4aez_A          304 ---------SQVTSLIWSPHSKEIMSTHGFPDN----NLSIWSYSSS  337 (401)
T ss_dssp             ---------SCEEEEEECSSSSEEEEEECTTTC----EEEEEEEETT
T ss_pred             ---------CcEEEEEECCCCCeEEEEeecCCC----cEEEEecCCc
Confidence                     11222333 33445665544 443    6777776553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.56  E-value=0.5  Score=44.07  Aligned_cols=234  Identities=10%  Similarity=-0.001  Sum_probs=114.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEE--ECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~~  108 (499)
                      .+|+.++.     -+.+.+||+.+++....-..+                  ....+++.  -++.+|+.+..      .
T Consensus        11 ~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~------~   61 (331)
T 3u4y_A           11 FGIVVEQH-----LRRISFFSTDTLEILNQITLG------------------YDFVDTAITSDCSNVVVTSDF------C   61 (331)
T ss_dssp             EEEEEEGG-----GTEEEEEETTTCCEEEEEECC------------------CCEEEEEECSSSCEEEEEEST------T
T ss_pred             EEEEEecC-----CCeEEEEeCcccceeeeEEcc------------------CCcceEEEcCCCCEEEEEeCC------C
Confidence            66776653     246899999999886654432                  11112222  23457776653      2


Q ss_pred             ceEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          109 MIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       109 ~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      ..++++|+.++.. ......+..|  .  ++++..  +..|| .+....   ....+++||+.+.+.......+.     
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~~--~--~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~-----  128 (331)
T 3u4y_A           62 QTLVQIETQLEPPKVVAIQEGQSS--M--ADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPY-----  128 (331)
T ss_dssp             CEEEEEECSSSSCEEEEEEECSSC--C--CCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCT-----
T ss_pred             CeEEEEECCCCceeEEecccCCCC--c--cceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCC-----
Confidence            3599999998875 3222212222  1  212222  34566 332211   12279999999887655433222     


Q ss_pred             ccceEEEEcCc-EEEEEcCCCCCCCCCc-EEEEECCCCc-eEecccCCCCCCcCcccEEEEE-CC-EEEEEeCCCCCCCc
Q 010847          186 YDHSAALHANR-YLIVFGGCSHSIFFND-LHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGC  260 (499)
Q Consensus       186 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~-i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~  260 (499)
                      .-+.++...++ ++|+.+...     +. +++|++.... ...... ...+.......++.. ++ .+|+.+..     .
T Consensus       129 ~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~-----~  197 (331)
T 3u4y_A          129 DAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI-----G  197 (331)
T ss_dssp             TEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT-----T
T ss_pred             CccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC-----C
Confidence            12344444444 567665432     35 7777765432 111100 001111111233333 33 46766542     2


Q ss_pred             ceEEEEECCCCce-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847          261 QETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  327 (499)
Q Consensus       261 ~~~~~~d~~~~~W-~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W  327 (499)
                      +.+.+||+.+... ..+..++...      .........+..+||+....    .+.++++|+...+.
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~~~------~~~~~~~spdg~~l~v~~~~----~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGTNN------LPGTIVVSRDGSTVYVLTES----TVDVFNFNQLSGTL  255 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECSS------CCCCEEECTTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred             CeEEEEECCCCcccceeeeccCCC------CCceEEECCCCCEEEEEEcC----CCEEEEEECCCCce
Confidence            3688999987765 1111121110      11112223334567765542    23588899876544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.37  E-value=0.71  Score=43.76  Aligned_cols=238  Identities=10%  Similarity=0.052  Sum_probs=106.3

Q ss_pred             CccccCCCCCeEEcccC-CCCCC-cc---cc-eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCC
Q 010847            5 SWHLELPYDLWVTLPVS-GARPS-PR---YK-KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   78 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~-~~~p~-~r---~~-~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      .|.+|+.++++..+... ...|. ..   .+ .||+.+........-.+|.+|..++....+.....             
T Consensus        31 ~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-------------   97 (361)
T 3scy_A           31 TFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-------------   97 (361)
T ss_dssp             EEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-------------
T ss_pred             EEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-------------
Confidence            46778888888766532 11221 01   12 56666553211112234556666688877655421             


Q ss_pred             CCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc-EEE----eecCCCCCCC-----CcceEEEEE-CC-EE
Q 010847           79 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGV----METSGKVPVA-----RGGHSVTLV-GS-RL  146 (499)
Q Consensus        79 ~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~----~~~~g~~p~~-----r~~~~~~~~-~~-~l  146 (499)
                        .....+.++.-++.||+....      ...+.+|++.+.. ...    ....|..|.+     ..-|+++.. ++ .|
T Consensus        98 --~~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           98 --MGADPCYLTTNGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             --SSSCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             --CCCCcEEEEECCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence              011222233334456665421      2348888876432 111    1111222211     111333332 34 57


Q ss_pred             EEEcCcCCCCCccCcEEEEECCCCe-------eEEe---eecCCCCCCCccceEEEEcCc-EEEEEcCCCCCCCCCcEEE
Q 010847          147 IIFGGEDRSRKLLNDVHFLDLETMT-------WDAV---EVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHV  215 (499)
Q Consensus       147 yv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~---~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~  215 (499)
                      |+.+..      .+.+++|++....       ....   ... ..+....-..++...++ ++|+.+..     .+.+.+
T Consensus       170 ~~~~~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v  237 (361)
T 3scy_A          170 LADDLG------TDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLINEI-----GGTVIA  237 (361)
T ss_dssp             EEEETT------TTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----TCEEEE
T ss_pred             EEEeCC------CCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEEcCC-----CCeEEE
Confidence            765431      3457788766443       2111   100 11111111223333344 56665532     246889


Q ss_pred             EECCCCceEecccCCCCCCcCcccEEEEE--CC-EEEEEeCCCCCCCcceEEEEEC--CCCceEEeccC
Q 010847          216 LDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSV  279 (499)
Q Consensus       216 ~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~--~~~~W~~l~~~  279 (499)
                      ||+.++.+..+......+........+.+  ++ .+|+.....    .+.+.+|++  .++.++.+...
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECTTTCCEEEEEEE
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcCCCCcEEEeeEe
Confidence            99887776554322222222222233333  33 455554320    123555554  56777666544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.16  Score=48.34  Aligned_cols=193  Identities=12%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC----CEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++.+++.|+.++      .+.+||+....+..+..   +........++.+.    +.+++.|+.+      ..+.+||+
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEE
T ss_pred             CCCEEEEEECCC------cEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEc
Confidence            355666666432      38888887766666542   11111222333332    5667777654      35899999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEc-C--cEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcCcccEEEE
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAGHAGIT  243 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~  243 (499)
                      .+..|..+.....   ......++.+. +  +.+++.|+.+     ..+.+||+.+..-.. ....+   ....-.+++.
T Consensus        87 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~  155 (379)
T 3jrp_A           87 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDA---HAIGVNSASW  155 (379)
T ss_dssp             ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEEC---CTTCEEEEEE
T ss_pred             CCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecC---CCCceEEEEE
Confidence            9998877664321   22223333332 3  4466776654     368888887663211 11000   0111112222


Q ss_pred             E--------------CCEEEEEeCCCCCCCcceEEEEECCCC--ceEEeccCCCCCCCCCCCCceEEEEEcCc---eEEE
Q 010847          244 I--------------DENWYIVGGGDNNNGCQETIVLNMTKL--AWSILTSVKGRNPLASEGLSVCSAIIEGE---HHLV  304 (499)
Q Consensus       244 ~--------------~~~l~v~GG~~~~~~~~~~~~~d~~~~--~W~~l~~~~~~~p~~~~~~~~~~~~~~~~---~~l~  304 (499)
                      .              ++.+++.|+.++     .+.+||+.+.  .+..+..+...      ......+....+   ..++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGH------SDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCC------SSCEEEEEECCCCSSSEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecc------cCcEeEEEECCCCCCCCeE
Confidence            2              356777776543     3677776543  35444333211      112233333333   4566


Q ss_pred             EEcCCCCCCCceEEEEECCCC
Q 010847          305 AFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       305 v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      +.|+.++    .+.+||+...
T Consensus       225 ~s~~~dg----~i~iwd~~~~  241 (379)
T 3jrp_A          225 ASVSQDR----TCIIWTQDNE  241 (379)
T ss_dssp             EEEETTS----CEEEEEESST
T ss_pred             EEEeCCC----EEEEEeCCCC
Confidence            6677665    5777777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.25  Score=47.77  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=71.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      .+..++.|+.+      ..+.+||+.+..-....   .... ..-.+++.. ++.+++.|+.+      ..+.+||+.+.
T Consensus       216 ~~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~~~~-~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~  279 (425)
T 1r5m_A          216 DDDKFVIPGPK------GAIFVYQITEKTPTGKL---IGHH-GPISVLEFNDTNKLLLSASDD------GTLRIWHGGNG  279 (425)
T ss_dssp             ETTEEEEECGG------GCEEEEETTCSSCSEEE---CCCS-SCEEEEEEETTTTEEEEEETT------SCEEEECSSSB
T ss_pred             CCCEEEEEcCC------CeEEEEEcCCCceeeee---ccCC-CceEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence            33445666643      34999998876432221   1111 111222222 45566666543      35888988775


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY  249 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~  249 (499)
                      .....-.    .....-.+++...++ +++.|+.+     ..+.+||+.+..-..... .   ....-.+++.. ++.++
T Consensus       280 ~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~-~---~~~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          280 NSQNCFY----GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI-V---DGVPIFAGRISQDGQKY  345 (425)
T ss_dssp             SCSEEEC----CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE-C---TTCCEEEEEECTTSSEE
T ss_pred             ccceEec----CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc-c---CCccEEEEEEcCCCCEE
Confidence            4322211    111222333444466 66666644     368999988765333211 1   01111122222 35666


Q ss_pred             EEeCCCCCCCcceEEEEECCCCc
Q 010847          250 IVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       250 v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ++|+.++     .+.+||+.+..
T Consensus       346 ~~~~~dg-----~i~i~~~~~~~  363 (425)
T 1r5m_A          346 AVAFMDG-----QVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTS-----CEEEEECHHHH
T ss_pred             EEEECCC-----eEEEEECCCCc
Confidence            6666432     47788876554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.34  E-value=0.14  Score=48.76  Aligned_cols=149  Identities=12%  Similarity=0.053  Sum_probs=75.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.+      ..+.+||+.++.+..+...   ....... +++.. ++.+++.|+.+      ..+.+||+.+
T Consensus        19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHEL---KEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEE---ECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCcEEeeeee---cCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCC
Confidence            45566666542      3499999999877665532   1111122 22222 45666666643      3588999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc-eEecccCCCCCCcCcccEEEEE-CC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE  246 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~  246 (499)
                      ..+........   .......+.+ .++.+++.|+.+     ..+.+||+.+.. |....... .+....-.+++.. ++
T Consensus        84 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           84 RTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             TEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTS
T ss_pred             CeeeeeEEeec---CCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCC
Confidence            88765543211   1122223333 344466666643     357777766544 32221100 1111111222222 45


Q ss_pred             EEEEEeCCCCCCCcceEEEEECC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                      .+++.|+.++     .+.+||+.
T Consensus       155 ~~l~~~~~dg-----~i~~~d~~  172 (372)
T 1k8k_C          155 VLLAAGSCDF-----KCRIFSAY  172 (372)
T ss_dssp             SEEEEEETTS-----CEEEEECC
T ss_pred             CEEEEEcCCC-----CEEEEEcc
Confidence            6677776433     46788853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.32  E-value=0.88  Score=44.32  Aligned_cols=223  Identities=13%  Similarity=0.089  Sum_probs=107.0

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      +.|.++|..++....+-....                ......++.+  ++.+++.|+.++      .+.++|+.+++-.
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~----------------~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~  182 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRL  182 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEE
Confidence            368899999998766544321                1122233333  456677777543      3899999888643


Q ss_pred             EeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847          123 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  202 (499)
Q Consensus       123 ~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  202 (499)
                      ...   ...  .....+...++.+++.|+.+      ..+..+|..+.........+.   ......+....++..++.|
T Consensus       183 ~~~---~~h--~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          183 RNM---TSH--SARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             EEE---CCC--SSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEE---eCC--CCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccc---ccceeeeeecCCCCeeeee
Confidence            332   111  12233445567777777654      357777776544332221111   1111122222344456666


Q ss_pred             CCCCCCCCCcEEEEECCCCceE--ecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      +.+     +.+.++|..+..-.  .+....  .....-.+++..  +..+++++|+..+   ..+.+||+.+..-.....
T Consensus       249 ~~D-----~~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          249 GND-----NLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVD  318 (420)
T ss_dssp             ETT-----SCEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEE
T ss_pred             ecc-----ccceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeec
Confidence            544     35777887654311  111000  000111112222  3455555443222   247788988876443222


Q ss_pred             CCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          279 VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       279 ~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ..        ......+.......+++.+|...   ..+.++|+..
T Consensus       319 ~~--------~~v~~~~~~~~~~~lv~~sg~~d---~~I~iwd~~~  353 (420)
T 4gga_A          319 AH--------SQVCSILWSPHYKELISGHGFAQ---NQLVIWKYPT  353 (420)
T ss_dssp             CS--------SCEEEEEEETTTTEEEEEECTTT---CCEEEEETTT
T ss_pred             cc--------cceeeeeecCCCCeEEEEEecCC---CEEEEEECCC
Confidence            11        11122223334456666555431   3688888754

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.32  E-value=0.11  Score=43.96  Aligned_cols=52  Identities=12%  Similarity=0.157  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010847          427 SVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .++...+.++.++.++++..-.++++.+...    .++.++.+...+..-++.+++
T Consensus        99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444433332    455555555555555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.24  E-value=0.51  Score=50.37  Aligned_cols=187  Identities=11%  Similarity=0.040  Sum_probs=92.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .++++|+.+     ..+.+||..++.....-...                .... .+++.. ++..++.|+.+      .
T Consensus        26 ~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~----------------~~~v-~~~~~s~~~~~l~~~~~d------g   77 (814)
T 3mkq_A           26 PWVLTTLYS-----GRVEIWNYETQVEVRSIQVT----------------ETPV-RAGKFIARKNWIIVGSDD------F   77 (814)
T ss_dssp             SEEEEEETT-----SEEEEEETTTTEEEEEEECC----------------SSCE-EEEEEEGGGTEEEEEETT------S
T ss_pred             CEEEEEeCC-----CEEEEEECCCCceEEEEecC----------------CCcE-EEEEEeCCCCEEEEEeCC------C
Confidence            555666532     35889999887654432211                0111 112222 45556666642      3


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC-eeEEeeecCCCCCCCc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRY  186 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~p~~r~  186 (499)
                      .+.+||..++.....-.  ..+   ....++.+  ++..++.|+.+      ..+.+||+.++ .....-. + .  ...
T Consensus        78 ~i~vw~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~-~--~~~  142 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFE--AHP---DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-G-H--EHF  142 (814)
T ss_dssp             EEEEEETTTCCEEEEEE--CCS---SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-C-C--SSC
T ss_pred             eEEEEECCCCcEEEEEe--cCC---CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-C-C--CCc
Confidence            49999998887644321  111   11222222  34455555532      35888998765 3322221 1 1  111


Q ss_pred             cceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE---CCEEEEEeCCCCCCCcce
Q 010847          187 DHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       187 ~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~  262 (499)
                      -.+++... ++.+++.|+.+     ..+.+||+.+..-..... .  ........++..   ++..+++|+.++     .
T Consensus       143 v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~  209 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLT-T--GQERGVNYVDYYPLPDKPYMITASDDL-----T  209 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEE-C--CCTTCCCEEEECCSTTCCEEEEECTTS-----E
T ss_pred             EEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEe-c--CCCCCEEEEEEEECCCCCEEEEEeCCC-----E
Confidence            12222333 45577777654     368899986654222110 1  111112223332   456777776432     5


Q ss_pred             EEEEECCCCce
Q 010847          263 TIVLNMTKLAW  273 (499)
Q Consensus       263 ~~~~d~~~~~W  273 (499)
                      +.+||+.+..-
T Consensus       210 i~~~d~~~~~~  220 (814)
T 3mkq_A          210 IKIWDYQTKSC  220 (814)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCcE
Confidence            78889877653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.23  E-value=0.8  Score=42.87  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=92.9

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      +.+++.|+.+      ..+.++|+.++.-...-.  ..+...  .+++. -++..++.|+.+      ..+.+||+.+..
T Consensus        92 ~~~l~s~s~D------~~i~lWd~~~~~~~~~~~--~~~~~~--~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~  155 (321)
T 3ow8_A           92 LPIAASSSLD------AHIRLWDLENGKQIKSID--AGPVDA--WTLAFSPDSQYLATGTHV------GKVNIFGVESGK  155 (321)
T ss_dssp             SSEEEEEETT------SEEEEEETTTTEEEEEEE--CCTTCC--CCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred             CCEEEEEeCC------CcEEEEECCCCCEEEEEe--CCCccE--EEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence            4566666643      348899998876433321  111111  12222 245666777643      358889987765


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYI  250 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v  250 (499)
                      -...-.  .  ....-.+++...++.+++.|+.+     ..+.+||+.+.+-...- .+ ..  ..-.+++.. ++.+++
T Consensus       156 ~~~~~~--~--~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~-~~-h~--~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          156 KEYSLD--T--RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTL-EG-HA--MPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             EEEEEE--C--SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC-CS--SCCCEEEECTTSCEEE
T ss_pred             eeEEec--C--CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-cc-cC--CceeEEEEcCCCCEEE
Confidence            332211  0  11112223333455567777654     35899999877543211 01 00  111122332 456777


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      .|+.+.     .+.+||+.+......  +..      +......+....+..+++.|+.++    .+.++|+..
T Consensus       223 s~s~dg-----~i~iwd~~~~~~~~~--~~~------h~~~v~~~~~sp~~~~l~s~s~D~----~v~iwd~~~  279 (321)
T 3ow8_A          223 TASDDG-----YIKIYDVQHANLAGT--LSG------HASWVLNVAFCPDDTHFVSSSSDK----SVKVWDVGT  279 (321)
T ss_dssp             EECTTS-----CEEEEETTTCCEEEE--ECC------CSSCEEEEEECTTSSEEEEEETTS----CEEEEETTT
T ss_pred             EEcCCC-----eEEEEECCCcceeEE--EcC------CCCceEEEEECCCCCEEEEEeCCC----cEEEEeCCC
Confidence            776443     378889877654321  111      111122233333233455677655    577788754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.19  E-value=0.64  Score=44.43  Aligned_cols=209  Identities=11%  Similarity=-0.031  Sum_probs=94.4

Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      ...++++|+.++.-..+...   + ....+....- +++.+++............++.+|+.+.....+...   .....
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~---~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~  239 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQE---N-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGES  239 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEE
T ss_pred             cceEEEEECCCCceEEeecC---C-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcc
Confidence            35799999999877666521   1 1222223333 444333322222111255899999987776655421   11111


Q ss_pred             cceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCC---CcCcccEEEEECCEEEEEeC---CCCCCC
Q 010847          187 DHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV---TGRAGHAGITIDENWYIVGG---GDNNNG  259 (499)
Q Consensus       187 ~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p---~~r~~~~~~~~~~~l~v~GG---~~~~~~  259 (499)
                      ....+...++ .|+...... ......++++|+.++.-..+.......   ....+.+...-+..+++...   ......
T Consensus       240 ~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred             cccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence            1112222343 343333211 111124999999988766553211100   00011122222333333210   001122


Q ss_pred             cceEEEEECCCCceEEeccCCCCCC----CCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847          260 CQETIVLNMTKLAWSILTSVKGRNP----LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  327 (499)
Q Consensus       260 ~~~~~~~d~~~~~W~~l~~~~~~~p----~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W  327 (499)
                      ...++++|+.++.-..+........    .............++ .+|+......+  ...+|.+++....|
T Consensus       319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg-~~l~~~s~~~g--~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDD-KQILFTSDVHG--KPALYLATLPESVW  387 (388)
T ss_dssp             CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred             CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCC-CEEEEEecCCC--ceeEEEEECChhcc
Confidence            4579999999988777654332000    000001112223333 35554443332  45799999876655

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.17  E-value=0.52  Score=43.93  Aligned_cols=193  Identities=11%  Similarity=0.034  Sum_probs=87.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      .+..++.|+.+.      .+.++|.....-....    ..........+.+  +  +.+++.||.+      ..+.+||+
T Consensus       139 ~~~~l~s~s~d~------~~~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~  202 (340)
T 4aow_A          139 DNRQIVSGSRDK------TIKLWNTLGVCKYTVQ----DESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNL  202 (340)
T ss_dssp             TSSCEEEEETTS------CEEEECTTSCEEEEEC----SSSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEET
T ss_pred             cCccceeecCCC------eEEEEEeCCCceEEEE----eccccCcccceEEccCCCCcEEEEEcCC------CEEEEEEC
Confidence            344555665432      2777777655433332    1111111222222  1  2455555543      35889999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECC
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  246 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  246 (499)
                      .+.+....-. +    ......++.+ .++.+++.|+.+     ..+.+||+.+..-...-. .    ...-.+++...+
T Consensus       203 ~~~~~~~~~~-~----h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~-~----~~~v~~~~~~~~  267 (340)
T 4aow_A          203 ANCKLKTNHI-G----HTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHLYTLD-G----GDIINALCFSPN  267 (340)
T ss_dssp             TTTEEEEEEC-C----CSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEEEEEE-C----SSCEEEEEECSS
T ss_pred             CCCceeeEec-C----CCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCceeeeec-C----CceEEeeecCCC
Confidence            8876543321 1    1111222333 355577777754     358889987665332111 1    111122333344


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~-l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ..++.++.+     ..+.+||+.+..-.. +...........+......+....+..+++.||.++    .+.++|+++
T Consensus       268 ~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~iW~~~t  337 (340)
T 4aow_A          268 RYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----LVRVWQVTI  337 (340)
T ss_dssp             SSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS----CEEEEEEEC
T ss_pred             CceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeCCC
Confidence            455555533     247788887765332 211111101111111222333333333455677665    577777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.14  E-value=0.26  Score=52.84  Aligned_cols=224  Identities=11%  Similarity=0.023  Sum_probs=117.4

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      .++.||+.++++.......               .....-.+++.. ++.|++...        ..+++||+.++.|...
T Consensus       428 Gl~~~~~~~~~~~~~~~~~---------------~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEK---------------NELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEECSSSCEEEECCSTT---------------TCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEE
T ss_pred             CEEEEcCCCCcEEEeccCC---------------CCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEec
Confidence            5777888888777664310               011122233333 467776431        2399999999998877


Q ss_pred             ecCCCCCCCCcc-eEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847          125 ETSGKVPVARGG-HSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  202 (499)
                      ......+..... .+++.. ++.|++..-       .+.+++||+.+.++........+|.. .-.+++...++.|++..
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTF-------GGGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEES-------SSCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEE
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEc-------CCCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEE
Confidence            532111111111 122222 457776421       13489999999998877542222211 11222222356566643


Q ss_pred             CCCCCCCCCcE-EEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCC
Q 010847          203 GCSHSIFFNDL-HVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       203 G~~~~~~~~~i-~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~  280 (499)
                      .       +-+ ++||+.++++........+|.... .+++.. ++.|++.+.       +-+.+||+.+..+.......
T Consensus       557 ~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~d  621 (781)
T 3v9f_A          557 G-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSN  621 (781)
T ss_dssp             T-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGG
T ss_pred             C-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccC
Confidence            2       236 899999888877654333443332 344433 456666532       23889999999887764432


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          281 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       281 ~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +. +  .......++....+..|+ |||.++     +..|++..
T Consensus       622 Gl-~--~~~f~~~~~~~~~~G~l~-~g~~~G-----l~~f~p~~  656 (781)
T 3v9f_A          622 NI-P--QGSFISGCVTKDHNGLIY-FGSING-----LCFFNPDI  656 (781)
T ss_dssp             TC-C--SSCEEEEEEEECTTSCEE-EEETTE-----EEEECSCC
T ss_pred             Cc-c--ccccccCceEECCCCEEE-EECCCc-----eEEEChhh
Confidence            21 1  111222233333333444 577654     55666643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.13  E-value=1.2  Score=46.96  Aligned_cols=235  Identities=10%  Similarity=0.006  Sum_probs=117.1

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-C-CEEEEEcccCCCC----------CCCceEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKS----------SDSMIVR  112 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~-~~iyv~GG~~~~~----------~~~~~~~  112 (499)
                      ..++++|+.++.........                 .. ..+++-. + ..||+.. .....          .....++
T Consensus       151 ~~i~v~d~~tg~~~~~~~~~-----------------~~-~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~  211 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLER-----------------VK-FSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLY  211 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----------------EC-SCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEE
T ss_pred             EEEEEEECCCCCCCcccccC-----------------cc-cceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEE
Confidence            37999999999887643211                 11 1112222 3 3455443 22220          1234589


Q ss_pred             EEECCCCcEE--EeecCCCCCCCCcceEEEE-ECC-EEEEEcCcCCCCCccCcEEEEECCC------C--eeEEeeecCC
Q 010847          113 FIDLETNLCG--VMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLET------M--TWDAVEVTQT  180 (499)
Q Consensus       113 ~yd~~t~~W~--~~~~~g~~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t------~--~W~~~~~~~~  180 (499)
                      ++++.++...  .+. . ....+.....+.. -++ .|++.......  ..++++++|+.+      .  .+..+.... 
T Consensus       212 ~~~l~t~~~~~~~v~-~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-  286 (710)
T 2xdw_A          212 YHVLGTDQSEDILCA-E-FPDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNGITGILKWVKLIDNF-  286 (710)
T ss_dssp             EEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSSSCSSCCCEEEECSS-
T ss_pred             EEECCCCcccceEEe-c-cCCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccccCCccceEEeeCCC-
Confidence            9999887643  221 1 1111222222222 234 45544332211  256899999976      4  577776311 


Q ss_pred             CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC---ceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCC
Q 010847          181 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN  256 (499)
Q Consensus       181 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~  256 (499)
                        ..  .......+++.||+.+..+  .....|+.+|+.+.   .|+.+..  ..+. ..-..++.. ++.+++....+ 
T Consensus       287 --~~--~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~~~~~~~~~~~~lv~~~~~~-  356 (710)
T 2xdw_A          287 --EG--EYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVP--EHEK-DVLEWVACVRSNFLVLCYLHD-  356 (710)
T ss_dssp             --SS--CEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEEC--CCSS-CEEEEEEEETTTEEEEEEEET-
T ss_pred             --Cc--EEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccC--CCCC-CeEEEEEEEcCCEEEEEEEEC-
Confidence              11  1122333466677776543  22457999999876   4887632  1111 112233444 56676665432 


Q ss_pred             CCCcceEEEEECCCCc-eEEeccCCCCCCCCCCCCceEEEEE--cCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          257 NNGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       257 ~~~~~~~~~~d~~~~~-W~~l~~~~~~~p~~~~~~~~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                        ....++++|+.++. ...+...        .+ ....+..  ++...++.+.+.  .....+|.||+...+
T Consensus       357 --g~~~l~~~~~~~g~~~~~l~~~--------~~-~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 --VKNTLQLHDLATGALLKIFPLE--------VG-SVVGYSGQKKDTEIFYQFTSF--LSPGIIYHCDLTKEE  416 (710)
T ss_dssp             --TEEEEEEEETTTCCEEEEECCC--------SS-EEEEEECCTTCSEEEEEEECS--SCCCEEEEEETTSSS
T ss_pred             --CEEEEEEEECCCCCEEEecCCC--------Cc-eEEEEecCCCCCEEEEEEeCC--CCCCEEEEEECCCCc
Confidence              24578999985554 4444321        11 1222222  233333433343  234589999987655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.12  E-value=0.31  Score=46.84  Aligned_cols=204  Identities=8%  Similarity=0.034  Sum_probs=92.4

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCc------EEEeecCCCCCCC---CcceEEEEE-----CCEE-EEEcCcCCCCCc
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVA---RGGHSVTLV-----GSRL-IIFGGEDRSRKL  158 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~------W~~~~~~g~~p~~---r~~~~~~~~-----~~~l-yv~GG~~~~~~~  158 (499)
                      .+++.|+.++      .+.+||+.++.      +..+.   ..+..   ..-.+++..     ++.. ++.|+.+     
T Consensus        82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----  147 (397)
T 1sq9_A           82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----  147 (397)
T ss_dssp             EEEEEEETTS------CEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred             cEEEEEcCCC------CEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence            6777777533      38888887776      66554   22110   111223333     3455 6776653     


Q ss_pred             cCcEEEEECCC------Ce---eE---Eeee--cCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE
Q 010847          159 LNDVHFLDLET------MT---WD---AVEV--TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       159 ~~~v~~yd~~t------~~---W~---~~~~--~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  224 (499)
                       ..+.+||+.+      ..   |.   .+..  .........-.++....++ +++.|+.+     ..+.+||+.+....
T Consensus       148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~  220 (397)
T 1sq9_A          148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL  220 (397)
T ss_dssp             -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred             -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence             3577787765      22   11   1110  0000112222333444466 77777654     46999999876543


Q ss_pred             ecccCCC--C-CCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEE-eccCC--CCCCCCC--CCCceEEE
Q 010847          225 QPEIKGD--L-VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVK--GRNPLAS--EGLSVCSA  295 (499)
Q Consensus       225 ~~~~~~~--~-p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~-l~~~~--~~~p~~~--~~~~~~~~  295 (499)
                      ..-. ..  . +....-.+++.. ++.++++|+.++  ....+.+||+.+..-.. +....  ...+...  +......+
T Consensus       221 ~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          221 YNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             EEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             EEEe-ccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence            3211 10  0 001111222222 456666666431  11358899987765322 22100  0000000  11223333


Q ss_pred             EEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          296 IIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       296 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      ....+..+++.|+.++    .+.+||+...
T Consensus       298 ~~~~~~~~l~~~~~dg----~i~iwd~~~~  323 (397)
T 1sq9_A          298 SFNDSGETLCSAGWDG----KLRFWDVKTK  323 (397)
T ss_dssp             EECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred             EECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence            3333223455566554    6888888654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.11  E-value=0.92  Score=43.84  Aligned_cols=190  Identities=12%  Similarity=0.051  Sum_probs=92.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.++.-....     ........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCC
Confidence            566777776532      3899998877543331     111112222333  45566666643      3589999877


Q ss_pred             CeeE-EeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEE-----
Q 010847          170 MTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-----  243 (499)
Q Consensus       170 ~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-----  243 (499)
                      .+-. .+.  +   ....-.+++...++..++.|+.+     ..+.+||+.+..-...-.....+. ..-.+++.     
T Consensus       171 ~~~~~~~~--~---h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  239 (420)
T 3vl1_A          171 GSNPRTLI--G---HRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTD  239 (420)
T ss_dssp             CCCCEEEE--C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCC
T ss_pred             CcCceEEc--C---CCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCc
Confidence            5422 121  1   01111223333344466666654     358899988765332110000000 00011111     


Q ss_pred             -----------------ECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCc-eEEEE
Q 010847          244 -----------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVA  305 (499)
Q Consensus       244 -----------------~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~-~~l~v  305 (499)
                                       -++.+++.|+.++     .+.+||+.+..-....  ..     .+......+....+ ..+++
T Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~--~~-----~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQL--PS-----KFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             SSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEE--CC-----TTSSCEEEEEECSSCTTEEE
T ss_pred             ceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEc--cc-----ccCCCceeEEEeCCCCCEEE
Confidence                             1456666666433     3788998776532211  11     01112233333332 32566


Q ss_pred             EcCCCCCCCceEEEEECCCC
Q 010847          306 FGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       306 ~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .|+.++    .+.++|+...
T Consensus       308 ~g~~dg----~i~vwd~~~~  323 (420)
T 3vl1_A          308 AGYENG----MLAQWDLRSP  323 (420)
T ss_dssp             EEETTS----EEEEEETTCT
T ss_pred             EEeCCC----eEEEEEcCCC
Confidence            677655    7888998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.11  E-value=0.87  Score=44.29  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++.      +.+||+.+..-  +.   .+........++.+  ++..++.|+.+      ..+.+||+.+
T Consensus       161 ~~~~l~sgs~D~~------i~iwd~~~~~~--~~---~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADMT------IKLWDFQGFEC--IR---TMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTSC------CCEEETTSSCE--EE---CCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEeCCCe------EEEEeCCCCce--eE---EEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Confidence            4567777775433      67778876543  22   11111112223333  45566666653      3588999987


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  224 (499)
                      ..-...-. +    ......++.+ .++.+++.|+.+     +.+.+||+.+....
T Consensus       224 ~~~~~~~~-~----h~~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          224 GYCVKTFT-G----HREWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECK  269 (410)
T ss_dssp             CCEEEEEE-C----CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEE
T ss_pred             CcEEEEEe-C----CCccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcee
Confidence            75432211 1    1111222233 355567777654     35888888776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.07  E-value=0.73  Score=48.37  Aligned_cols=154  Identities=8%  Similarity=-0.033  Sum_probs=75.0

Q ss_pred             cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCC-ceEecccCCC-CCCc
Q 010847          159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPEIKGD-LVTG  235 (499)
Q Consensus       159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~~~~~~-~p~~  235 (499)
                      ...++++|+.+.+-..+...   .........+.+ .++..++++..+.......++.+|+.++ ....+..... ....
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCC---SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             eeEEEEEECCCCceEeeccC---CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence            45799999998876554321   111112222333 3544455544433333457999999988 6665431110 0000


Q ss_pred             CcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCC
Q 010847          236 RAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY  313 (499)
Q Consensus       236 r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~  313 (499)
                      ........-  ++++++.+..+   ....+|.+|........+..-.       ...........+...|++.+..++..
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~---g~~~l~~~~~~~~~~~~l~~~~-------~~v~~~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRD---GWNHLYLYDTTGRLIRQVTKGE-------WEVTNFAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTT---SSCEEEEEETTSCEEEECCCSS-------SCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred             ccCCceeecCCCCEEEEEEccC---CccEEEEEECCCCEEEecCCCC-------eEEEeeeEEcCCCCEEEEEecCCCCc
Confidence            001112222  55655555432   2457899997777666663211       01111112222334565555443333


Q ss_pred             CceEEEEECCCC
Q 010847          314 NNEVFVMRLKPR  325 (499)
Q Consensus       314 ~~~~~~~~~~~~  325 (499)
                      ...+|.+|+...
T Consensus       381 ~~~l~~~d~~~~  392 (706)
T 2z3z_A          381 ERHFYCIDIKGG  392 (706)
T ss_dssp             CBEEEEEETTCC
T ss_pred             eEEEEEEEcCCC
Confidence            457777777554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.02  E-value=0.065  Score=55.56  Aligned_cols=9  Identities=22%  Similarity=0.246  Sum_probs=3.9

Q ss_pred             EEECCCCCC
Q 010847          319 VMRLKPRDI  327 (499)
Q Consensus       319 ~~~~~~~~W  327 (499)
                      .+++..+.|
T Consensus       349 ~L~l~~N~~  357 (597)
T 3oja_B          349 NLTLSHNDW  357 (597)
T ss_dssp             EEECCSSCE
T ss_pred             EEEeeCCCC
Confidence            344444433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.02  E-value=1  Score=42.16  Aligned_cols=185  Identities=12%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++..++.|+.+      ..+.+||..++.-.....   .. ...-.+++. -++++++.|+.+      ..+.+||+.+.
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~  196 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-GKFILSIAYSPDGKYLASGAID------GIINIFDIATG  196 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-CceEEEEEECCCCCEEEEEcCC------CeEEEEECCCC
Confidence            45566666543      348888988775432221   11 111112222 245666777654      35899999887


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY  249 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~  249 (499)
                      +-...-. + .  ...-.+++...++.+++.|+.+     ..+.+||+.+......- .+   ....-.+++.. ++..+
T Consensus       197 ~~~~~~~-~-h--~~~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          197 KLLHTLE-G-H--AMPIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANLAGTL-SG---HASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             EEEEEEC-C-C--SSCCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCEEEEE-CC---CSSCEEEEEECTTSSEE
T ss_pred             cEEEEEc-c-c--CCceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcceeEEE-cC---CCCceEEEEECCCCCEE
Confidence            6432211 1 1  1111223333455577777654     35889998776543311 01   01111122222 45667


Q ss_pred             EEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEEC
Q 010847          250 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  322 (499)
Q Consensus       250 v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  322 (499)
                      +.|+.+.     .+.++|+.+..-..  .+...      ......+....+...++.||.++    .+.++|.
T Consensus       264 ~s~s~D~-----~v~iwd~~~~~~~~--~~~~h------~~~v~~v~~s~~g~~l~s~~~d~----~i~vwd~  319 (321)
T 3ow8_A          264 VSSSSDK-----SVKVWDVGTRTCVH--TFFDH------QDQVWGVKYNGNGSKIVSVGDDQ----EIHIYDC  319 (321)
T ss_dssp             EEEETTS-----CEEEEETTTTEEEE--EECCC------SSCEEEEEECTTSSEEEEEETTC----CEEEEEC
T ss_pred             EEEeCCC-----cEEEEeCCCCEEEE--EEcCC------CCcEEEEEECCCCCEEEEEeCCC----eEEEEeC
Confidence            7776443     47788987765332  22111      11222333333333455676655    4666664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.99  E-value=0.89  Score=47.75  Aligned_cols=120  Identities=14%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCC---ccceeEEEECCEEEEEcccCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPP---MSDHCMVKWGTKLLILGGHYKKS  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~---r~~~s~~~~~~~iyv~GG~~~~~  105 (499)
                      .||+...      .+.++.+|..+++  |+.-......           ..+..   ....+.++.++.||+...     
T Consensus        79 ~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~~v~v~~~-----  136 (677)
T 1kb0_A           79 IMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS-----------TGFKGCCDVVNRGVALWKGKVYVGAW-----  136 (677)
T ss_dssp             EEEEECG------GGCEEEEETTTTEEEEEECCCCCGG-----------GGGGSSSCSCCCCCEEETTEEEEECT-----
T ss_pred             EEEEECC------CCeEEEEECCCCcEEEEEcCCCCcc-----------ccccccccCCCCCceEECCEEEEEcC-----
Confidence            6666543      2469999999876  8775432210           00000   112245567888888643     


Q ss_pred             CCCceEEEEECCCCc--EEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEee
Q 010847          106 SDSMIVRFIDLETNL--CGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  176 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~--W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~  176 (499)
                        ...++.+|..|++  |+..... ..+. .....+.++.++.+|+..+... ......++.||..|++  |+.-.
T Consensus       137 --dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          137 --DGRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             --TSEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred             --CCEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence              2349999998875  7765310 1111 1122233456788776443221 1124579999998875  86543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.98  E-value=1.7  Score=44.52  Aligned_cols=124  Identities=10%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEEC-CCC--cEEEeecCCC--CCCC---CcceEEEEECCEEEEEcCcCCCCCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETN--LCGVMETSGK--VPVA---RGGHSVTLVGSRLIIFGGEDRSRKL  158 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~--~W~~~~~~g~--~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~  158 (499)
                      +.++.++.||+....      ...++.+|. .++  .|+.-.....  .+..   ....+.+..+++||+...       
T Consensus        57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            345679999998652      123999999 776  4876431100  0001   112234567888888643       


Q ss_pred             cCcEEEEECCCC--eeEEeeecCCCCCC-CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          159 LNDVHFLDLETM--TWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       159 ~~~v~~yd~~t~--~W~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ...++++|..|+  .|+.-..  ..+.. ....+.++. ++.+|+..+......-..++.||..+++  |+.-
T Consensus       124 dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            246999999877  4875421  11111 111122333 5656554332111123579999998775  8763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.98  E-value=0.044  Score=56.85  Aligned_cols=8  Identities=25%  Similarity=0.663  Sum_probs=3.1

Q ss_pred             EEEEEcCC
Q 010847           47 VQVFDLRS   54 (499)
Q Consensus        47 ~~~yd~~t   54 (499)
                      +..+|+..
T Consensus        77 L~~L~L~~   84 (597)
T 3oja_B           77 VELLNLND   84 (597)
T ss_dssp             CSEEECTT
T ss_pred             CcEEECCC
Confidence            33344433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.14  Score=54.68  Aligned_cols=107  Identities=13%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++.+++.||.+      ..+.+||..+..+..+..   +........++.+  +  +.+++.|+.+      ..+.++|+
T Consensus        20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT------TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEE
T ss_pred             CCCeEEEEECC------CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEEC
Confidence            34566666643      348888888777776653   2211222233333  2  5677777754      35899999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEc-C--cEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .++.|..+.....   ......++.+. +  +.+++.|+.+     ..+.+||+.+.
T Consensus        85 ~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~  133 (753)
T 3jro_A           85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN  133 (753)
T ss_dssp             ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSS
T ss_pred             CCCcccccccccC---CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecC
Confidence            9998876664321   22223333332 3  4467777654     36888888765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.88  E-value=1.3  Score=42.44  Aligned_cols=191  Identities=10%  Similarity=0.019  Sum_probs=90.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCC-----------CCcceEEEEECCEEEEEcCcCCCCCccC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-----------ARGGHSVTLVGSRLIIFGGEDRSRKLLN  160 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~-----------~r~~~~~~~~~~~lyv~GG~~~~~~~~~  160 (499)
                      ++..++.|+.+      ..+.+||+.++...........+.           ...-.+++...+..++.|+.+      .
T Consensus       160 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g  227 (425)
T 1r5m_A          160 DGTHIISMDVE------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G  227 (425)
T ss_dssp             TSSEEEEEETT------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred             CCCEEEEEecC------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence            34555556543      238899998876544331111110           000222333334446666643      4


Q ss_pred             cEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccE
Q 010847          161 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  240 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  240 (499)
                      .+.+||+.+..-...-.  .  ....-.+++...++.+++.|+.+     ..+.+||+.+......-  .  .....-.+
T Consensus       228 ~i~~~d~~~~~~~~~~~--~--~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~  294 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLI--G--HHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF--Y--GHSQSIVS  294 (425)
T ss_dssp             CEEEEETTCSSCSEEEC--C--CSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE--C--CCSSCEEE
T ss_pred             eEEEEEcCCCceeeeec--c--CCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe--c--CCCccEEE
Confidence            69999998764322111  0  11111233333344466666643     35888988765432211  0  11112223


Q ss_pred             EEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEE
Q 010847          241 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  320 (499)
Q Consensus       241 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  320 (499)
                      ++...+.+++.|+.++     .+.+||+.+..-.......        ......+....+..+++.|+.++    .+.+|
T Consensus       295 ~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg----~i~i~  357 (425)
T 1r5m_A          295 ASWVGDDKVISCSMDG-----SVRLWSLKQNTLLALSIVD--------GVPIFAGRISQDGQKYAVAFMDG----QVNVY  357 (425)
T ss_dssp             EEEETTTEEEEEETTS-----EEEEEETTTTEEEEEEECT--------TCCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred             EEECCCCEEEEEeCCC-----cEEEEECCCCcEeEecccC--------CccEEEEEEcCCCCEEEEEECCC----eEEEE
Confidence            3444333666665432     5889998776533321110        11222333333333555666554    67788


Q ss_pred             ECCC
Q 010847          321 RLKP  324 (499)
Q Consensus       321 ~~~~  324 (499)
                      |+..
T Consensus       358 ~~~~  361 (425)
T 1r5m_A          358 DLKK  361 (425)
T ss_dssp             ECHH
T ss_pred             ECCC
Confidence            8753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.86  E-value=0.32  Score=46.72  Aligned_cols=225  Identities=11%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      .+.+||+.++.-...-....                +.........  ++.+++.|+.++      .+.+||+.+..-..
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~~~~~~  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNFEE----------------TVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEECSS----------------CEEEEEECSSCSSCCEEEEEESSS------SEEEEESSSSCCCE
T ss_pred             eEEEeeCCCCccceeccCCC----------------ceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCCcceee
Confidence            58889998877554433211                1111111111  334666666432      38899988765322


Q ss_pred             eecCCCCCCCCcceEEEEE--C-CEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecC-----CC----CCCCccce
Q 010847          124 METSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQ-----TP----PAPRYDHS  189 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~-----~~----p~~r~~~~  189 (499)
                      .-   .  .......++.+  + ..+++.|+.+      ..+.+||+.+..  ...+....     ..    ........
T Consensus       181 ~~---~--~~~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          181 IL---Q--GHRQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EE---C--CCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             ee---c--CCCCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            21   1  11111222233  2 2377777654      358888886543  22221000     00    11111122


Q ss_pred             EEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCc--ccEEEEECCEEEEEeCCCCCCCcceEEEE
Q 010847          190 AALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA--GHAGITIDENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       190 ~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~--~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      .+.+ .++..++.|+.+     +.+.+||+.+..-..............  ........+..+++++.+     ..+.+|
T Consensus       250 ~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~  319 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVY  319 (408)
T ss_dssp             EEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEE
T ss_pred             EEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEE
Confidence            2333 344456666654     358999988765433211111111111  111111123334444322     268889


Q ss_pred             ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       267 d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      |+.+..-...  +...      ......+....+..+++.|+.++    .+.++|+...
T Consensus       320 d~~~~~~~~~--~~~~------~~~v~~~~~s~~~~~l~s~~~dg----~i~iw~~~~~  366 (408)
T 4a11_B          320 TVYSGEQITM--LKGH------YKTVDCCVFQSNFQELYSGSRDC----NILAWVPSLY  366 (408)
T ss_dssp             ETTTCCEEEE--ECCC------SSCEEEEEEETTTTEEEEEETTS----CEEEEEECC-
T ss_pred             ECcCCcceee--eccC------CCeEEEEEEcCCCCEEEEECCCC----eEEEEeCCCC
Confidence            9877654322  2111      11122223333223455677665    6777777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.85  E-value=1.2  Score=41.49  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=71.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcC-CCceEEeeeCcccccCccccCCCCCCCCCccceeEEE--ECCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~  107 (499)
                      .+|+.++.     -..+.+||+. +++...+.....                ...-.+++.  -++.||+.+...     
T Consensus         6 ~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~-----   59 (343)
T 1ri6_A            6 TVYIASPE-----SQQIHVWNLNHEGALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPE-----   59 (343)
T ss_dssp             EEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTT-----
T ss_pred             EEEEeCCC-----CCeEEEEEECCCCcEEEeeeEec----------------CCCCceEEECCCCCEEEEeecCC-----
Confidence            56666442     2357888874 566665544321                111111222  244566654421     


Q ss_pred             CceEEEEECC--CCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCC
Q 010847          108 SMIVRFIDLE--TNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPP  182 (499)
Q Consensus       108 ~~~~~~yd~~--t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p  182 (499)
                       ..+.+|++.  ++.+..+...   +....-..++.. ++ .||+.+..      .+.+.+||+.+.. ...+.....  
T Consensus        60 -~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~--  127 (343)
T 1ri6_A           60 -FRVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEG--  127 (343)
T ss_dssp             -TEEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECC--
T ss_pred             -CeEEEEEecCCCCceeecccc---ccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccC--
Confidence             347777665  7787766421   111111222222 33 56665432      2358888874322 222222111  


Q ss_pred             CCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCC-CceEe
Q 010847          183 APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQ  225 (499)
Q Consensus       183 ~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~  225 (499)
                       ...-+.++...+ +.+|+.+..+     +.+.+||+.+ .+...
T Consensus       128 -~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          128 -LDGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVA  166 (343)
T ss_dssp             -CTTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEE
T ss_pred             -CCCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceee
Confidence             111223333333 4566654222     4699999887 65553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.83  E-value=0.11  Score=49.67  Aligned_cols=150  Identities=11%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+++.|+.+     ..+.+||+.++.|..+.....                .......+.+  ++.+++.|+.++     
T Consensus        24 ~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~s~~~~~l~s~s~d~-----   77 (377)
T 3dwl_C           24 TEFVTTTAT-----NQVELYEQDGNGWKHARTFSD----------------HDKIVTCVDWAPKSNRIVTCSQDR-----   77 (377)
T ss_dssp             SEEECCCSS-----SCBCEEEEETTEEEECCCBCC----------------CSSCEEEEEECTTTCCEEEEETTS-----
T ss_pred             CEEEEecCC-----CEEEEEEccCCceEEEEEEec----------------CCceEEEEEEeCCCCEEEEEeCCC-----
Confidence            666777643     357889999988877765532                1112222333  356666776432     


Q ss_pred             ceEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCCCC
Q 010847          109 MIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  184 (499)
Q Consensus       109 ~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p~~  184 (499)
                       .+.+||+.++. |.....   .........++.+  ++.+++.|+.+      ..+.+||+.+.+ |..+..... +..
T Consensus        78 -~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~h~  146 (377)
T 3dwl_C           78 -NAYVYEKRPDGTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKR-PLR  146 (377)
T ss_dssp             -SEEEC------CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECS-SCC
T ss_pred             -eEEEEEcCCCCceeeeeE---ecccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeec-ccC
Confidence             38888988876 544332   1111112222333  45666666643      247888877654 322222111 111


Q ss_pred             CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          185 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       185 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ..-.+++...++.+++.|+.+     ..+.+||+.+..
T Consensus       147 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  179 (377)
T 3dwl_C          147 STILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVRD  179 (377)
T ss_dssp             SCEEEEEECTTSSEEEEEESS-----SCEEEEEECCSS
T ss_pred             CCeEEEEEcCCCCEEEEEeCC-----CEEEEEEEEecc
Confidence            112223333355567777654     358888876443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.81  E-value=2.3  Score=44.67  Aligned_cols=123  Identities=18%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .||+...      .+.++.+|..+++  |+.-......      ..  ..........+.++.++.||+...       .
T Consensus        72 ~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~g~v~v~~~-------d  130 (689)
T 1yiq_A           72 VMYTTGP------FSVVYALDARDGRLIWKYDPQSDRH------RA--GEACCDAVNRGVAVWKGKVYVGVL-------D  130 (689)
T ss_dssp             EEEEECG------GGCEEEEETTTCCEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred             EEEEEcC------CCeEEEEECCCCceeEEEcCCCCcc------cc--ccccccCCCCccEEECCEEEEEcc-------C
Confidence            6666543      2469999998875  8864432110      00  000000112234567888887642       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEe
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  175 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~  175 (499)
                      ..++.+|..|++  |+...............+.++.++.+|+-.+.. .......++.||..|++  |+.-
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA-EFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC-ccCCCCEEEEEECCCCcEEEEec
Confidence            349999998884  876542001111112223455688887732221 11124579999998875  8754

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.80  E-value=0.22  Score=37.89  Aligned_cols=49  Identities=8%  Similarity=0.088  Sum_probs=20.4

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ++..+...+....+.+.++..++..++.++..+.+.+..+.+..++|..
T Consensus        28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A           28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444444444444333

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.80  E-value=0.26  Score=46.74  Aligned_cols=185  Identities=8%  Similarity=0.037  Sum_probs=91.1

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.||.++      .+.++|..++.|......  .........++.+  ++.+++.|+.+.      .+.++|..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEE--CSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeee--ccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence            466777777543      388888888887644321  0101111222333  456677777543      477888877


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc-eEecccCCCCCCcCcccEEEEE-CC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE  246 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~  246 (499)
                      ..+..+.....   .......+.+ .++.+++.|+.+     ..+.++|+.+.. +..+......  ...-.+++.. ++
T Consensus        93 ~~~~~~~~~~~---h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~  162 (345)
T 3fm0_A           93 DDFECVTTLEG---HENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQ  162 (345)
T ss_dssp             C-EEEEEEECC---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSS
T ss_pred             CCeEEEEEccC---CCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCC
Confidence            76655443211   1112223333 355567777654     358888876543 3222110100  0011122222 34


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  311 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  311 (499)
                      .+++.|+.++     .+.+||..+..|..+..+...      ......+....+..+++.|+.++
T Consensus       163 ~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h------~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          163 ELLASASYDD-----TVKLYREEEDDWVCCATLEGH------ESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SCEEEEETTS-----CEEEEEEETTEEEEEEEECCC------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             CEEEEEeCCC-----cEEEEEecCCCEEEEEEecCC------CCceEEEEECCCCCEEEEEeCCC
Confidence            5666666443     367788888877655443321      11222333333333555666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.79  E-value=0.32  Score=47.81  Aligned_cols=109  Identities=11%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++.+++.|+.++      .+.++|+.+..-....   ........-.++.+   ++.+++.|+.+.      .|.++|+.
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence            456777887543      3888898877544333   11111111122333   456667777543      48889998


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      +.....+.....  ......++....++.+++.|+.+     ..|.++|+....
T Consensus       196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~  242 (435)
T 4e54_B          196 GNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE  242 (435)
T ss_dssp             SCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB
T ss_pred             CCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce
Confidence            877665543221  12222233344455577777754     358899986543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.75  E-value=1.4  Score=41.68  Aligned_cols=112  Identities=12%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             eEEEEcCCCCCc-ccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGR-FLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~  107 (499)
                      ..+++|.+.... ..-.++.+|+.++++..+... ..               .... .++..  +..||+.+..... ..
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~---------------~~p~-~l~~spdg~~l~~~~~~~~~-~~   75 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EV---------------ANPS-YLIPSADGKFVYSVNEFSKD-QA   75 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-EC---------------SCCC-SEEECTTSSEEEEEECCSST-TC
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cC---------------CCCc-eEEECCCCCEEEEEEccCCC-CC
Confidence            445567664321 112356678888988877653 10               1111 12221  3457666543211 11


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      .-.+|.++..++....+..   .+. ...-..++.-++.||+.+..      .+.+.+|++.+
T Consensus        76 ~v~~~~~~~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~  129 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANYS------GGSITVFPIGQ  129 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEETT------TTEEEEEEBCT
T ss_pred             cEEEEEEeCCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEECC------CCEEEEEEeCC
Confidence            2234556666677776652   221 11112222323356665432      24588888864

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.73  E-value=0.16  Score=38.65  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      +..|+.++............+...........+.++..+.+.++.++.+++..++++.+....+.+.++.
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~   80 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444555555555555555555555555555555444444444333

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.72  E-value=1.2  Score=40.77  Aligned_cols=234  Identities=11%  Similarity=-0.094  Sum_probs=116.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+++..     ...++.||+.++ ...+...                  ....++++.. ++.||+....      ..
T Consensus        41 ~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~------------------~~~~~~l~~~~dg~l~v~~~~------~~   90 (296)
T 3e5z_A           41 AVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP------------------SHHQNGHCLNKQGHLIACSHG------LR   90 (296)
T ss_dssp             EEEEEEGG-----GTEEEEEETTSC-EEEEESS------------------CSSEEEEEECTTCCEEEEETT------TT
T ss_pred             EEEEEeCC-----CCEEEEEECCCC-eEEEECC------------------CCCcceeeECCCCcEEEEecC------CC
Confidence            37777653     236899999988 5555432                  1112233332 5677766431      23


Q ss_pred             eEEEEECCCCcEEEeecC-CCCCCCCcceEEEEECCEEEEE----cCcCC-------CCCccCcEEEEECCCCeeEEeee
Q 010847          110 IVRFIDLETNLCGVMETS-GKVPVARGGHSVTLVGSRLIIF----GGEDR-------SRKLLNDVHFLDLETMTWDAVEV  177 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~lyv~----GG~~~-------~~~~~~~v~~yd~~t~~W~~~~~  177 (499)
                      .+.+||+.+++...+... ...+..+....++.-+++||+.    |....       .......++.||+. .+...+..
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR  169 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence            499999989888766421 0111111122223335688886    43110       01113478999887 55554432


Q ss_pred             cCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC-CCce-EecccCCCCCCcCcccEEEEE-CCEEEEEeCC
Q 010847          178 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEW-SQPEIKGDLVTGRAGHAGITI-DENWYIVGGG  254 (499)
Q Consensus       178 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W-~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~  254 (499)
                        ...   .-..++...++.+++.+..     .+.+++||+. ++.. ...... ..... .-.+++.. ++.+||..+ 
T Consensus       170 --~~~---~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~-~~~~~-~p~~i~~d~~G~l~v~~~-  236 (296)
T 3e5z_A          170 --DRV---KPNGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHF-TVEPG-KTDGLRVDAGGLIWASAG-  236 (296)
T ss_dssp             --CCS---SEEEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEE-CCSSS-CCCSEEEBTTSCEEEEET-
T ss_pred             --CCC---CCccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEe-eCCCC-CCCeEEECCCCCEEEEcC-
Confidence              111   1123333334445544322     2479999986 4555 221111 11111 11123332 567887751 


Q ss_pred             CCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCC
Q 010847          255 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       255 ~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~  328 (499)
                            +.+.+||+.......+.....        ...+.....+...|++...      ..+|+|++++..-+
T Consensus       237 ------~~v~~~~~~g~~~~~~~~~~~--------~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~~  290 (296)
T 3e5z_A          237 ------DGVHVLTPDGDELGRVLTPQT--------TSNLCFGGPEGRTLYMTVS------TEFWSIETNVRGLE  290 (296)
T ss_dssp             ------TEEEEECTTSCEEEEEECSSC--------CCEEEEESTTSCEEEEEET------TEEEEEECSCCBCC
T ss_pred             ------CeEEEECCCCCEEEEEECCCC--------ceeEEEECCCCCEEEEEcC------CeEEEEEccccccc
Confidence                  358899998655444432211        1111121223346776442      26999998776544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.72  E-value=1.5  Score=46.19  Aligned_cols=211  Identities=11%  Similarity=0.036  Sum_probs=101.8

Q ss_pred             cccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCC
Q 010847           42 RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETN  119 (499)
Q Consensus        42 ~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~  119 (499)
                      .....+++.+...+.|+.+-.....          +  .........+.+  +++.++++....... ...++++|+.++
T Consensus        95 ~~~~~l~~~~~~~~~~~~lld~~~l----------~--~~~~~~~~~~~~SPDg~~la~~~~~~G~~-~~~i~v~d~~tg  161 (710)
T 2xdw_A           95 QNQRVLYVQDSLEGEARVFLDPNIL----------S--DDGTVALRGYAFSEDGEYFAYGLSASGSD-WVTIKFMKVDGA  161 (710)
T ss_dssp             CSSCEEEEESSTTSCCEEEECGGGG----------C--TTSCEEEEEEEECTTSSEEEEEEEETTCS-CEEEEEEETTTT
T ss_pred             ceEEEEEEEcCCCCCcEEEECHHHh----------c--cCCCEEEEEEEECCCCCEEEEEEcCCCCc-eEEEEEEECCCC
Confidence            3445678888877888765322110          0  001111122222  444444443322211 236999999999


Q ss_pred             cEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcCcCCC---------CCccCcEEEEECCCCeeE--EeeecCCCCCCCc
Q 010847          120 LCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRS---------RKLLNDVHFLDLETMTWD--AVEVTQTPPAPRY  186 (499)
Q Consensus       120 ~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~---------~~~~~~v~~yd~~t~~W~--~~~~~~~~p~~r~  186 (499)
                      ........+    .. ...++.. ++ .||+.......         ......++.+++.+....  .+..  ....+..
T Consensus       162 ~~~~~~~~~----~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~  234 (710)
T 2xdw_A          162 KELPDVLER----VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKW  234 (710)
T ss_dssp             EEEEEEEEE----EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTC
T ss_pred             CCCcccccC----cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec--cCCCCeE
Confidence            877643211    11 1122222 44 45544322110         013456999999887632  2211  1111222


Q ss_pred             cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCC------C--ceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC
Q 010847          187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------N--EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  258 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~--~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  258 (499)
                      ......-.++..++++........++++++|+.+      .  .+..+...   ... ........++.+|+.+..+.  
T Consensus       235 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~-~~~~~s~dg~~l~~~s~~~~--  308 (710)
T 2xdw_A          235 MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEG-EYDYVTNEGTVFTFKTNRHS--  308 (710)
T ss_dssp             EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSS-CEEEEEEETTEEEEEECTTC--
T ss_pred             EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCc-EEEEEeccCCEEEEEECCCC--
Confidence            2233333344334443322222257899999876      4  57666321   111 11122334667887765322  


Q ss_pred             CcceEEEEECCCC---ceEEecc
Q 010847          259 GCQETIVLNMTKL---AWSILTS  278 (499)
Q Consensus       259 ~~~~~~~~d~~~~---~W~~l~~  278 (499)
                      ....++++|+.+.   .|..+..
T Consensus       309 ~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          309 PNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEEC
T ss_pred             CCCEEEEEeCCCCCcccceeccC
Confidence            2357999998875   5887643

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.67  E-value=0.43  Score=36.50  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847          417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      ....+++++..++...+.++.+++++|+..-+++++.+...    .++.+..+...+-.-++.|+++-.
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe  104 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666777777777777778888888777777765544    677888888888887888876443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.66  E-value=0.15  Score=38.37  Aligned_cols=35  Identities=9%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhc
Q 010847          382 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNS  416 (499)
Q Consensus       382 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  416 (499)
                      ++.-|+.+....++.+.....+..+|++++...+.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666666666666666666666666666555444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.55  E-value=1.7  Score=44.49  Aligned_cols=122  Identities=11%  Similarity=0.096  Sum_probs=65.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEc-CCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDL-RSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~  107 (499)
                      .||+....     ...++.||. .+++  |+.-......      ..  ..+.......+.++.++.||+...       
T Consensus        64 ~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           64 MMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAS------TK--AVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             EEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             EEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCcc------cc--ccccccccccccEEECCEEEEEeC-------
Confidence            67766542     246999999 7765  8874432100      00  000000112234667899988643       


Q ss_pred             CceEEEEECCCC--cEEEeecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEe
Q 010847          108 SMIVRFIDLETN--LCGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  175 (499)
Q Consensus       108 ~~~~~~yd~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~  175 (499)
                      ...++.+|..|+  .|+....  ..+.. ....+.++.++.+|+-.+... ......++.||..|++  |+.-
T Consensus       124 dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEc
Confidence            234999999888  4875431  11111 111233456888877543211 1123579999998764  8654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.54  E-value=1.3  Score=42.67  Aligned_cols=201  Identities=7%  Similarity=-0.017  Sum_probs=94.1

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC--CCCCCCCcceEEEEE--CC-EEEEEcCcCCCCCccCcEEEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLD  166 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd  166 (499)
                      ++.+++.|+.+      ..+.+||..++........  ..+........++.+  ++ .+++.|+.+      ..+.+||
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD  160 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence            45677777643      3488889887643110000  000001111222223  22 467777653      3589999


Q ss_pred             CCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-
Q 010847          167 LETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-  244 (499)
Q Consensus       167 ~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-  244 (499)
                      +.+.+....-....   .......+.+ .++.+++.|+.+     ..+.+||+.+..-...-..+ ....+ ...++.. 
T Consensus       161 ~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~~~  230 (402)
T 2aq5_A          161 VGTGAAVLTLGPDV---HPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRP-HEGTR-PVHAVFVS  230 (402)
T ss_dssp             TTTTEEEEEECTTT---CCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECS-SCSSS-CCEEEECS
T ss_pred             CCCCCccEEEecCC---CCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccC-CCCCc-ceEEEEcC
Confidence            98876543321001   1112223333 345466666644     46999999887643321001 11111 1223333 


Q ss_pred             CCEEEEEeCCCCCCCcceEEEEECCCCce-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          245 DENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       245 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~W-~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      ++.++++|....  ....+.+||+.+..- ........      ...........+...|++.|+.++    .+.+||+.
T Consensus       231 ~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~g~~dg----~i~i~d~~  298 (402)
T 2aq5_A          231 EGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDT------SSGVLLPFFDPDTNIVYLCGKGDS----SIRYFEIT  298 (402)
T ss_dssp             TTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCC------CSSCEEEEEETTTTEEEEEETTCS----CEEEEEEC
T ss_pred             CCcEEEEeccCC--CCceEEEEcCccccCCceEEeccC------CCceeEEEEcCCCCEEEEEEcCCC----eEEEEEec
Confidence            556666652111  123678889876432 11111111      011122233334457777776554    57777776


Q ss_pred             CCC
Q 010847          324 PRD  326 (499)
Q Consensus       324 ~~~  326 (499)
                      ...
T Consensus       299 ~~~  301 (402)
T 2aq5_A          299 SEA  301 (402)
T ss_dssp             SST
T ss_pred             CCC
Confidence            543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.53  E-value=0.83  Score=43.35  Aligned_cols=185  Identities=12%  Similarity=0.072  Sum_probs=89.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      +++.++.|+.++      .+.++|+.++.-...-   ...  .....++.+   +..+++.|+.+      ..+.++|+.
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~---~~h--~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY---RAH--AAQVTCVAASPHKDSVFLSCSED------NRILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCC--SSCEEEEEECSSCTTEEEEEETT------SCEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCc--CCceEEEEecCCCCCceeeeccc------ccccccccc
Confidence            466677776543      3889999887543322   111  111122222   23577777654      358899998


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcCcccEEEEE-
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAGHAGITI-  244 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~-  244 (499)
                      +.+-...-.   .........++.+  .++.+++.|+.+     ..|.+||+.+.+-.. +.  +   ....-.+++.. 
T Consensus       201 ~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~~~--~---h~~~v~~v~fsp  267 (344)
T 4gqb_B          201 CPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLSSA--V---HSQCVTGLVFSP  267 (344)
T ss_dssp             SSSCEEECC-------CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEEEE--C---CSSCEEEEEECS
T ss_pred             ccceeeeee---cceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEEEc--C---CCCCEEEEEEcc
Confidence            765432211   1111111222333  244577777654     358899987654211 11  1   01111122222 


Q ss_pred             CC-EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcCCCCCCCceEEEEEC
Q 010847          245 DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRL  322 (499)
Q Consensus       245 ~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~  322 (499)
                      ++ .+++.|+.+.     .+.+||..+..-..+..         +......+... .+..|++.||.++    .+..+++
T Consensus       268 ~g~~~lasgs~D~-----~i~vwd~~~~~~~~~~~---------H~~~V~~v~~sp~~~~llas~s~D~----~v~~w~v  329 (344)
T 4gqb_B          268 HSVPFLASLSEDC-----SLAVLDSSLSELFRSQA---------HRDFVRDATWSPLNHSLLTTVGWDH----QVVHHVV  329 (344)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTCCEEEEECC---------CSSCEEEEEECSSSTTEEEEEETTS----CEEEEEC
T ss_pred             CCCeEEEEEeCCC-----eEEEEECCCCcEEEEcC---------CCCCEEEEEEeCCCCeEEEEEcCCC----eEEEEEC
Confidence            23 4566666433     37788988775433211         11122233332 2345676777765    5666666


Q ss_pred             CC
Q 010847          323 KP  324 (499)
Q Consensus       323 ~~  324 (499)
                      ..
T Consensus       330 ~~  331 (344)
T 4gqb_B          330 PT  331 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.53  E-value=0.2  Score=45.48  Aligned_cols=10  Identities=10%  Similarity=0.232  Sum_probs=3.6

Q ss_pred             hhhhhHHHHH
Q 010847          436 RSRCFKLEAQ  445 (499)
Q Consensus       436 ~~~~~~~~~~  445 (499)
                      +.+...++.+
T Consensus       103 ~~~i~~lE~e  112 (256)
T 3na7_A          103 KERSNQANRE  112 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.53  E-value=1.7  Score=41.29  Aligned_cols=203  Identities=9%  Similarity=-0.010  Sum_probs=96.8

Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      ...++++|+.++....+..   .+ ....+....- ++. |++... +........++.+|+.+..+..+..    ..+.
T Consensus       167 ~~~l~~~d~~~g~~~~~~~---~~-~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQ---DT-AWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE----HAEG  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEE---ES-SCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred             cceEEEEECCCCcEEeecc---CC-cccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence            3569999999988776652   11 1112222222 243 544432 2211123579999998887766542    1111


Q ss_pred             ccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCC-------
Q 010847          186 YDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN-------  256 (499)
Q Consensus       186 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~-------  256 (499)
                      .......+ .++..+++...........++++|+.++....+..   .+.  .. ....- +++++++.+...       
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC-------
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcceeeccc
Confidence            11222233 34433333332212212349999998887766532   111  11 22222 556666544221       


Q ss_pred             ----CCCcceEEEEECCCCceEEeccCCCCC----CCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCC
Q 010847          257 ----NNGCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       257 ----~~~~~~~~~~d~~~~~W~~l~~~~~~~----p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~  328 (499)
                          ......++++|+.++....+.......    ..............++ ..|+......+  ...+|.+++....+.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s~~~~--~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTSDFEG--VPAIYIADVPESYKH  388 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTS--SCEEEEEECCTTCC-
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCC-CeEEEEecCCC--CceEEEEEEcccccc
Confidence                112357999999888766654332100    0000001111222333 35554443322  457999998766544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.52  E-value=1  Score=47.48  Aligned_cols=110  Identities=11%  Similarity=-0.010  Sum_probs=53.9

Q ss_pred             cEEEEECCC-CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCC-CcCcc
Q 010847          161 DVHFLDLET-MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAG  238 (499)
Q Consensus       161 ~v~~yd~~t-~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~  238 (499)
                      .++++|+.+ .+-..+...  .+.......++. .|+..++++..+.......++++|+.++....+....... .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             EEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence            788889888 765554321  011111222333 4433344433322233467999999988776643211100 00001


Q ss_pred             cEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          239 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       239 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      .....-++++++.++.+   ....+|.+|.... ...+.
T Consensus       341 ~~~~spdg~~~~~~~~~---g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERT---GFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             CCEECTTSCEEEEECTT---SSCEEEEECSSSC-EEESC
T ss_pred             ceEECCCCeEEEEecCC---CccEEEEEcCCCC-eeeee
Confidence            11122245666555432   2457899987766 55553

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.51  E-value=0.56  Score=37.42  Aligned_cols=22  Identities=9%  Similarity=0.287  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Q 010847          459 IENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      +..+...++++...+..+++++
T Consensus       102 L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A          102 LTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.51  E-value=1.5  Score=40.34  Aligned_cols=231  Identities=9%  Similarity=0.005  Sum_probs=110.6

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-C-CEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      ..+.+||+.++++..+......             .....-++++.. + +.||+....       +.+++||+. ++..
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~-------------~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~  104 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVN-------------GYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFE  104 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEET-------------TEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEE
T ss_pred             CEEEEEeCCCCcEEEEEecccC-------------CCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEE
Confidence            4689999999998765431000             001112233332 4 688887541       249999998 7776


Q ss_pred             Ee-ecCCCCCCCCcceEEEE-ECCEEEEEcCcC---------CCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEE
Q 010847          123 VM-ETSGKVPVARGGHSVTL-VGSRLIIFGGED---------RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAA  191 (499)
Q Consensus       123 ~~-~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~---------~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~  191 (499)
                      .+ ...........-+.++. -+++||+.....         ........+++||+. .+...+......     ...++
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-----~~~i~  178 (314)
T 1pjx_A          105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF-----PNGIA  178 (314)
T ss_dssp             ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS-----EEEEE
T ss_pred             EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC-----cceEE
Confidence            55 32111111111122332 256788765432         111123578999886 555544321111     12333


Q ss_pred             EE----cCc-EEEEEcCCCCCCCCCcEEEEECC-CCceEecccCCCCCCc--CcccEEEEE-CCEEEEEeCCCCCCCcce
Q 010847          192 LH----ANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTG--RAGHAGITI-DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       192 ~~----~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~--r~~~~~~~~-~~~l~v~GG~~~~~~~~~  262 (499)
                      ..    .++ .+|+....     .+.+++||+. ++...........+..  ..-..++.. ++.+||....     .+.
T Consensus       179 ~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~  248 (314)
T 1pjx_A          179 VRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSH  248 (314)
T ss_dssp             EEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTE
T ss_pred             EecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCE
Confidence            33    444 56665432     2568999875 4443321110111111  111223332 4577776422     125


Q ss_pred             EEEEECCCCce-EEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          263 TIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       263 ~~~~d~~~~~W-~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      +.+||+.+... ..+. .+.        .....+..+ +...|++.+..+    ..+++|++...
T Consensus       249 i~~~d~~~g~~~~~~~-~~~--------~~~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIR-CPF--------EKPSNLHFKPQTKTIFVTEHEN----NAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSCSEEEE-CSS--------SCEEEEEECTTSSEEEEEETTT----TEEEEEECSSC
T ss_pred             EEEEcCCCCcEeEEEe-CCC--------CCceeEEECCCCCEEEEEeCCC----CeEEEEeCCCC
Confidence            88999885442 2221 111        112222333 334577655433    37899998653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.50  E-value=0.11  Score=57.34  Aligned_cols=16  Identities=13%  Similarity=0.437  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHhHHHH
Q 010847          458 TIENEVQILRQQKSAF  473 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~  473 (499)
                      .|+++.+.+++|+..+
T Consensus      1027 ~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1027 ELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.49  E-value=1.6  Score=40.78  Aligned_cols=158  Identities=12%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++..++.|+.+      ..+.+||+.++.......   .+.+  -.+++.. ++..++.++.+... ....+.+||+.+.
T Consensus        85 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~l~~~~~~~~~-~~g~i~~~d~~~~  152 (369)
T 3zwl_B           85 FTKYCVTGSAD------YSIKLWDVSNGQCVATWK---SPVP--VKRVEFSPCGNYFLAILDNVMK-NPGSINIYEIERD  152 (369)
T ss_dssp             TSSEEEEEETT------TEEEEEETTTCCEEEEEE---CSSC--EEEEEECTTSSEEEEEECCBTT-BCCEEEEEEEEEC
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEee---cCCC--eEEEEEccCCCEEEEecCCccC-CCCEEEEEEecCC
Confidence            35566666643      349999998887554431   1111  1122222 34455554433111 1346777776543


Q ss_pred             e----eEEeeecC--C--CCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCC-CceEecccCCCCCCcCcccE
Q 010847          171 T----WDAVEVTQ--T--PPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHA  240 (499)
Q Consensus       171 ~----W~~~~~~~--~--~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~  240 (499)
                      .    +.......  .  .........++.+ .++.+++.|+.+     ..+.+||+.+ ..-...-. .   ....-.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~---~~~~v~~  223 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSID-L---HEKSISD  223 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEE-C---CSSCEEE
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEe-c---CCCceeE
Confidence            2    11111000  0  0001112223333 344466666643     3689999887 33222110 1   1111122


Q ss_pred             EEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEE
Q 010847          241 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       241 ~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  275 (499)
                      ++.. ++.++++|+.++     .+.+||+.+.....
T Consensus       224 ~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDT-----NSFLVDVSTLQVLK  254 (369)
T ss_dssp             EEECTTSSEEEEEETTS-----EEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEecCCc-----eEEEEECCCCceee
Confidence            2222 455666665332     58899988766443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.48  E-value=2.1  Score=41.95  Aligned_cols=146  Identities=10%  Similarity=0.119  Sum_probs=74.4

Q ss_pred             ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          142 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       142 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .++.+++.|+.+      ..+.+||+.+.+-...-. +   ....-.+++...++..++.|+.+     +.+.+||+.+.
T Consensus       278 ~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~  342 (464)
T 3v7d_B          278 GHGNIVVSGSYD------NTLIVWDVAQMKCLYILS-G---HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENG  342 (464)
T ss_dssp             EETTEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTT
T ss_pred             CCCCEEEEEeCC------CeEEEEECCCCcEEEEec-C---CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Confidence            344555666543      359999998766433221 1   11112223333344466666654     35999999876


Q ss_pred             ceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010847          222 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  301 (499)
Q Consensus       222 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~  301 (499)
                      .-...     ..........+..++..++.|+.++     .+.+||+.+..-.......       ..........++ .
T Consensus       343 ~~~~~-----~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~-~  404 (464)
T 3v7d_B          343 ELMYT-----LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHHT-------NLSAITTFYVSD-N  404 (464)
T ss_dssp             EEEEE-----ECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEECT-------TCCCEEEEEECS-S
T ss_pred             cEEEE-----EeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecCC-------CCccEEEEEeCC-C
Confidence            53321     1111122234445667777776443     4788898776532211111       011222333333 2


Q ss_pred             EEEEEcCCCCCCCceEEEEECCCCC
Q 010847          302 HLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       302 ~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                       +++.|+ ++    .+.++|+...+
T Consensus       405 -~l~~~~-dg----~i~iwd~~~g~  423 (464)
T 3v7d_B          405 -ILVSGS-EN----QFNIYNLRSGK  423 (464)
T ss_dssp             -EEEEEE-TT----EEEEEETTTCC
T ss_pred             -EEEEec-CC----eEEEEECCCCc
Confidence             455555 33    78899987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.48  E-value=1.8  Score=41.24  Aligned_cols=187  Identities=8%  Similarity=0.012  Sum_probs=95.6

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEEC--CEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG-HSVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      .+++.|+.++      .+.+||+.+.......   ........ .+++...  +.+++.|+.+      ..+.++|+.+.
T Consensus        87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG------DIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS------CEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSC
T ss_pred             CEEEEEcCCC------eEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCC
Confidence            5777776533      3999999988776654   21111112 2333333  3666666643      35889999887


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE-E
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-W  248 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l  248 (499)
                      ....+....  .....-.+++...++.+++.|+.+     ..+.+||+....-..+.  +   ....-.+++.. ++. +
T Consensus       152 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~---h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          152 VIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEK--L---HKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEE--C---SSSCEEEEEECSSCTTE
T ss_pred             ceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEec--c---CCCcEEEEEECCCCCCE
Confidence            666554311  111112233333455467777654     46899998544333331  1   11111122222 233 6


Q ss_pred             EEEeCCCCCCCcceEEEEECCC----CceEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEcCCCCCCCceEEEEECC
Q 010847          249 YIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       249 ~v~GG~~~~~~~~~~~~~d~~~----~~W~~l~~~~~~~p~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      ++.|+.++     .+.+||+.+    ........  .       ......+.... +..+++.|+.++    .+.+||+.
T Consensus       220 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~--~-------~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~  281 (383)
T 3ei3_B          220 MATSSVDA-----TVKLWDLRNIKDKNSYIAEMP--H-------EKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSY  281 (383)
T ss_dssp             EEEEETTS-----EEEEEEGGGCCSTTCEEEEEE--C-------SSCEEEEEECTTTSCEEEEEESSS----EEEEEETT
T ss_pred             EEEEeCCC-----EEEEEeCCCCCcccceEEEec--C-------CCceEEEEEcCCCCCEEEEEcCCC----cEEEEECC
Confidence            77776432     478888876    33222111  1       11222333333 334555666554    68888876


Q ss_pred             CC
Q 010847          324 PR  325 (499)
Q Consensus       324 ~~  325 (499)
                      ..
T Consensus       282 ~~  283 (383)
T 3ei3_B          282 DW  283 (383)
T ss_dssp             BT
T ss_pred             CC
Confidence            54

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.42  E-value=1.9  Score=41.08  Aligned_cols=224  Identities=13%  Similarity=0.170  Sum_probs=116.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .||+...      ...+++||+.+++  |+.-......     .    ..........+.+..++.||+...       .
T Consensus        55 ~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~v~v~~~-------~  112 (376)
T 3q7m_A           55 VVYAADR------AGLVKALNADDGKEIWSVSLAEKDG-----W----FSKEPALLSGGVTVSGGHVYIGSE-------K  112 (376)
T ss_dssp             EEEEECT------TSEEEEEETTTCCEEEEEECCC--------C----CSCCCCCEEEEEEEETTEEEEEET-------T
T ss_pred             EEEEEcC------CCeEEEEEccCCceeeeecCccccc-----c----ccccCcccccCceEeCCEEEEEcC-------C
Confidence            6766543      1368999998775  6654321100     0    000012333455667889988543       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCC-
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPA-  183 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~-  183 (499)
                      ..++.||+.+++  |+....  .   . ...+.+..++.+|+..+       ...++.||+.+++  |+....  .... 
T Consensus       113 g~l~a~d~~tG~~~W~~~~~--~---~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~--~~~~~  177 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVA--G---E-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLD--MPSLS  177 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECS--S---C-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECC--C----
T ss_pred             CEEEEEECCCCCEEEEEeCC--C---c-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCC--CCcee
Confidence            359999998875  755431  1   1 12223455788877533       2369999998765  875432  1111 


Q ss_pred             CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcC--------cccEEEEECCEEEEEeC
Q 010847          184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR--------AGHAGITIDENWYIVGG  253 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r--------~~~~~~~~~~~l~v~GG  253 (499)
                      .+...+.+.. ++.+|+ |..+     ..++.||+.+++  |+....   .|...        .....+..++.+|+.+.
T Consensus       178 ~~~~~~~~~~-~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~  247 (376)
T 3q7m_A          178 LRGESAPTTA-FGAAVV-GGDN-----GRVSAVLMEQGQMIWQQRIS---QATGSTEIDRLSDVDTTPVVVNGVVFALAY  247 (376)
T ss_dssp             -CCCCCCEEE-TTEEEE-CCTT-----TEEEEEETTTCCEEEEEECC---C-----------CCCCCCEEETTEEEEECT
T ss_pred             ecCCCCcEEE-CCEEEE-EcCC-----CEEEEEECCCCcEEEEEecc---cCCCCcccccccccCCCcEEECCEEEEEec
Confidence            1111223333 664555 4322     369999998765  776321   11110        11233445777776542


Q ss_pred             CCCCCCcceEEEEECCCCc--eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          254 GDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       254 ~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                       +     ..++.+|+.++.  |..-  .+.          .......+ +.||+... +    ..++.||..+.
T Consensus       248 -~-----g~l~~~d~~tG~~~w~~~--~~~----------~~~~~~~~-~~l~~~~~-~----g~l~~~d~~tG  297 (376)
T 3q7m_A          248 -N-----GNLTALDLRSGQIMWKRE--LGS----------VNDFIVDG-NRIYLVDQ-N----DRVMALTIDGG  297 (376)
T ss_dssp             -T-----SCEEEEETTTCCEEEEEC--CCC----------EEEEEEET-TEEEEEET-T----CCEEEEETTTC
T ss_pred             -C-----cEEEEEECCCCcEEeecc--CCC----------CCCceEEC-CEEEEEcC-C----CeEEEEECCCC
Confidence             1     258899987764  6642  110          11222333 35665432 2    26888887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.40  E-value=0.85  Score=46.47  Aligned_cols=194  Identities=15%  Similarity=0.114  Sum_probs=95.0

Q ss_pred             ceEEEEECCCCcEEEeecCCCC--------CCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecC
Q 010847          109 MIVRFIDLETNLCGVMETSGKV--------PVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ  179 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~--------p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~  179 (499)
                      +.+.++|..+.+-...-....+        |.++....+... +..+|+...      ..+.++.+|..+.+-..+... 
T Consensus       248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~~i-  320 (543)
T 1nir_A          248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVTSI-  320 (543)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEEEE-
T ss_pred             CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeEEe-
Confidence            3488899888764433211111        222222222222 345555432      145799999877542221111 


Q ss_pred             CCCCCCccceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCC
Q 010847          180 TPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDN  256 (499)
Q Consensus       180 ~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~  256 (499)
                        +..+.-+.++...++ ++|+.+..     .+.|.++|+.+++-...-..+..|.+..+... ..  ++.+|+.+...+
T Consensus       321 --~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d  392 (543)
T 1nir_A          321 --GAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD  392 (543)
T ss_dssp             --ECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred             --ccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC
Confidence              112333334444344 45554322     35789999998875543222444444333222 23  256777654221


Q ss_pred             CCCcceEEEEECCCC-----ceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC--CCceEEEEECCCCC
Q 010847          257 NNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD  326 (499)
Q Consensus       257 ~~~~~~~~~~d~~~~-----~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~  326 (499)
                          +.+-++|+.+.     .|+.+..++....     ......+..+..+|++-.-.+..  ....+.+||+.+.+
T Consensus       393 ----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          393 ----GSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             ----SEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ----ceEEEEEeCCCCCchhcCeEEEEEEcCCC-----CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence                25777887762     3776665543211     11222233334577763211111  24589999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.38  E-value=1.7  Score=40.13  Aligned_cols=188  Identities=12%  Similarity=0.071  Sum_probs=87.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.+      ..+.+||+.++.-...-.  ..+   ....++.+  ++.+++.|+.+      ..+.++|+.+
T Consensus        66 ~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~--~h~---~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~  128 (304)
T 2ynn_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFE--AHP---DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWEN  128 (304)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEE--CCS---SCEEEEEECSSSSEEEEEETT------SCEEEEEGGG
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEEEe--CCC---CcEEEEEEcCCCCEEEEECCC------CeEEEEECCC
Confidence            44556666643      348899998875432210  111   11122222  34566666654      3588888865


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE---
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---  244 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---  244 (499)
                      .. ......   ........++.+.  ++.+++.|+.+     ..+.+||+.+..-..... .  ...+....+...   
T Consensus       129 ~~-~~~~~~---~~h~~~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~-~--~~~~~v~~~~~~~~~  196 (304)
T 2ynn_A          129 NW-ALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLT-T--GQERGVNYVDYYPLP  196 (304)
T ss_dssp             TT-EEEEEE---CCCCSCEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEE-C--CCTTCEEEEEECCST
T ss_pred             Cc-chhhhh---cccCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceec-c--CCcCcEEEEEEEEcC
Confidence            42 111111   0011112233342  44467777765     358888876543111000 0  001111111111   


Q ss_pred             CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          245 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       245 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ++.+++.|+.+.     .+.++|+.+..-.  ..+...      ......+....+..+++.|+.++    .+.++|+..
T Consensus       197 ~~~~l~s~s~D~-----~i~iWd~~~~~~~--~~~~~h------~~~v~~~~~~p~~~~l~s~s~Dg----~i~iWd~~~  259 (304)
T 2ynn_A          197 DKPYMITASDDL-----TIKIWDYQTKSCV--ATLEGH------MSNVSFAVFHPTLPIIISGSEDG----TLKIWNSST  259 (304)
T ss_dssp             TCCEEEEEETTS-----EEEEEETTTTEEE--EEEECC------SSCEEEEEECSSSSEEEEEETTS----CEEEEETTT
T ss_pred             CCCEEEEEcCCC-----eEEEEeCCCCccc--eeeCCC------CCCEEEEEECCCCCEEEEEcCCC----eEEEEECCC
Confidence            345666666432     4778888776432  222111      11222333333333566677665    577788765


Q ss_pred             C
Q 010847          325 R  325 (499)
Q Consensus       325 ~  325 (499)
                      .
T Consensus       260 ~  260 (304)
T 2ynn_A          260 Y  260 (304)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.38  E-value=0.37  Score=51.71  Aligned_cols=174  Identities=10%  Similarity=0.002  Sum_probs=93.1

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      +.+++||+.+++|.........          ...+.... .++... ++.|++... .       .+++||+.++.+ .
T Consensus       471 ~Gl~~~~~~~~~~~~~~~~~~~----------~~~~~~~i-~~i~~d~~g~lWigt~-~-------Gl~~~~~~~~~~-~  530 (795)
T 4a2l_A          471 SALVRFNPEQRSFTTIEKEKDG----------TPVVSKQI-TTLFRDSHKRLWIGGE-E-------GLSVFKQEGLDI-Q  530 (795)
T ss_dssp             SCEEEEETTTTEEEECCBCTTC----------CBCCCCCE-EEEEECTTCCEEEEES-S-------CEEEEEEETTEE-E
T ss_pred             CceeEEeCCCCeEEEccccccc----------cccCCceE-EEEEECCCCCEEEEeC-C-------ceEEEeCCCCeE-E
Confidence            4588899999999877543100          00001111 222222 467776432 1       299999999888 5


Q ss_pred             eecCCCCC-CCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEE
Q 010847          124 METSGKVP-VARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV  200 (499)
Q Consensus       124 ~~~~g~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v  200 (499)
                      .......+ .+-....++..  ++.|++...        +.+++||+.+.++........+|... -.+++...++.|++
T Consensus       531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi  601 (795)
T 4a2l_A          531 KASILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWL  601 (795)
T ss_dssp             ECCCSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEE
T ss_pred             EecCCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEE
Confidence            43110111 11111122222  467777432        24899999999988776443344332 23333334566777


Q ss_pred             EcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcc-cEEEEECCEEEEEeCC
Q 010847          201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITIDENWYIVGGG  254 (499)
Q Consensus       201 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~~~~l~v~GG~  254 (499)
                      .+.       +-+.+||+.+.++........++...+. .+++...+.-+.|||.
T Consensus       602 ~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~  649 (795)
T 4a2l_A          602 STN-------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI  649 (795)
T ss_dssp             EET-------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET
T ss_pred             EcC-------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC
Confidence            553       3589999999998876543334444332 2334444434445553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.32  E-value=1.9  Score=40.45  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      .+.+||+.++.-...-   ....  ....++.+  ++.+++.|+.+      ..+.++|+.+..-...-. +   ....-
T Consensus       165 ~i~~wd~~~~~~~~~~---~~h~--~~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~-~---h~~~v  229 (340)
T 1got_B          165 TCALWDIETGQQTTTF---TGHT--GDVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQTFT-G---HESDI  229 (340)
T ss_dssp             CEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEEEC-C---CSSCE
T ss_pred             cEEEEECCCCcEEEEE---cCCC--CceEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEEEc-C---CcCCE
Confidence            3889999888644322   1111  11122222  45677777754      358889987765332211 1   01111


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIV  265 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~  265 (499)
                      .+++...++.+++.|+.+     ..+.+||+.+..-...-  . .+........+.+  ++.+++.|+.++     .+.+
T Consensus       230 ~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~--~-~~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~v  296 (340)
T 1got_B          230 NAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY--S-HDNIICGITSVSFSKSGRLLLAGYDDF-----NCNV  296 (340)
T ss_dssp             EEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE--C-CTTCCSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred             EEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE--c-cCCcccceEEEEECCCCCEEEEECCCC-----eEEE
Confidence            222333355567777654     35889998776532211  1 1111112222222  456777766432     4788


Q ss_pred             EECCCCc
Q 010847          266 LNMTKLA  272 (499)
Q Consensus       266 ~d~~~~~  272 (499)
                      ||..+..
T Consensus       297 wd~~~~~  303 (340)
T 1got_B          297 WDALKAD  303 (340)
T ss_dssp             EETTTCC
T ss_pred             EEcccCc
Confidence            8876654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.30  E-value=1.7  Score=42.21  Aligned_cols=226  Identities=15%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+++.|+.+     ..+.+||+.+++-......                  ......+...++.+++.|+.+      ..
T Consensus       160 ~~lasgs~D-----g~v~iWd~~~~~~~~~~~~------------------h~~~v~~~s~~~~~l~sgs~d------~~  210 (420)
T 4gga_A          160 NYLAVGTSS-----AEVQLWDVQQQKRLRNMTS------------------HSARVGSLSWNSYILSSGSRS------GH  210 (420)
T ss_dssp             SEEEEEETT-----SCEEEEETTTTEEEEEECC------------------CSSCEEEEEEETTEEEEEETT------SE
T ss_pred             CEEEEEECC-----CeEEEEEcCCCcEEEEEeC------------------CCCceEEEeeCCCEEEEEeCC------Cc
Confidence            455555532     2478889888754332211                  112233444566677777653      34


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCc
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY  186 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~  186 (499)
                      +..+|..+.........+.    ........  ..+..++.|+.+      +.+.+++..+..  +..+.....   ...
T Consensus       211 i~~~d~~~~~~~~~~~~~h----~~~~~~~~~~~~g~~l~s~~~D------~~v~i~~~~~~~~~~~~~~~~~~---~~~  277 (420)
T 4gga_A          211 IHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLASGGND------NLVNVWPSAPGEGGWVPLQTFTQ---HQG  277 (420)
T ss_dssp             EEEEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEEEETT------SCEEEEESSCCSSCSCCSEEECC---CSS
T ss_pred             eeEeeecccceeeEEeccc----ccceeeeeecCCCCeeeeeecc------ccceEEeeccccccceeeeeecc---cCC
Confidence            7777776654332221111    11111222  234555555543      347777776543  111111001   111


Q ss_pred             cceEEEE---cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcc
Q 010847          187 DHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  261 (499)
Q Consensus       187 ~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  261 (499)
                      ...+..+   +...+++.||..+    ..|.+||+.++........     .....+++..  ++.+++.+|..+.    
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d~----  344 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQN----  344 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTTC----
T ss_pred             ceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCCC----
Confidence            1112222   2343444444332    3588999988764442111     1111122222  3445555554332    


Q ss_pred             eEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          262 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       262 ~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      .+.+||..+..  .+..+.+.      ......+....+..+++.||.++    .+.++|+.
T Consensus       345 ~I~iwd~~~~~--~v~~l~gH------~~~V~~l~~spdg~~l~S~s~D~----tvriWdv~  394 (420)
T 4gga_A          345 QLVIWKYPTMA--KVAELKGH------TSRVLSLTMSPDGATVASAAADE----TLRLWRCF  394 (420)
T ss_dssp             CEEEEETTTCC--EEEEECCC------SSCEEEEEECTTSSCEEEEETTT----EEEEECCS
T ss_pred             EEEEEECCCCc--EEEEEcCC------CCCEEEEEEcCCCCEEEEEecCC----eEEEEECC
Confidence            47888987654  23333221      11222333333333555677665    56666653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.22  E-value=1.3  Score=43.37  Aligned_cols=189  Identities=12%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE---CCEEEEEcccCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~---~~~iyv~GG~~~~~~~  107 (499)
                      .+++.|+.++     .|.+||+.++.-...-....                ......++.+   ++.+++.|+.++    
T Consensus       133 ~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~g----------------H~~~V~~l~f~p~~~~~l~s~s~D~----  187 (435)
T 4e54_B          133 STVAVGSKGG-----DIMLWNFGIKDKPTFIKGIG----------------AGGSITGLKFNPLNTNQFYASSMEG----  187 (435)
T ss_dssp             TCEEEEETTS-----CEEEECSSCCSCCEEECCCS----------------SSCCCCEEEECSSCTTEEEEECSSS----
T ss_pred             CEEEEEeCCC-----EEEEEECCCCCceeEEEccC----------------CCCCEEEEEEeCCCCCEEEEEeCCC----
Confidence            4566666433     47888888766443332211                1111122232   455666676543    


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                        .+.++|+.++....+....  .......++.. -++.+++.|+.+      ..+.++|+.+..-..+.      ....
T Consensus       188 --~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~------~h~~  251 (435)
T 4e54_B          188 --TTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLR------MHKK  251 (435)
T ss_dssp             --CEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSB------CCSS
T ss_pred             --EEEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEe------cccc
Confidence              3888999887766554221  11111222222 256677777754      35888898654321111      1112


Q ss_pred             cceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcce
Q 010847          187 DHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       187 ~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~  262 (499)
                      ....+.+.  +..+++.|+.+     ..|.+||+.+..-..... ..... ...-..+.+  ++..++.|+.++     .
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d-----~~v~iwd~~~~~~~~~~~-~~~~h-~~~v~~~~~spdg~~l~s~~~D~-----~  319 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVD-----QTVKIWDLRQVRGKASFL-YSLPH-RHPVNAACFSPDGARLLTTDQKS-----E  319 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETT-----SBCCEEETTTCCSSSCCS-BCCBC-SSCEEECCBCTTSSEEEEEESSS-----C
T ss_pred             eEEeeeecCCCceEEEEecCc-----ceeeEEecccccccceEE-Eeeec-cccccceeECCCCCeeEEEcCCC-----E
Confidence            22333332  33466666654     347788876654221100 00000 011111112  456666766443     3


Q ss_pred             EEEEECCCCc
Q 010847          263 TIVLNMTKLA  272 (499)
Q Consensus       263 ~~~~d~~~~~  272 (499)
                      +.+||+.+..
T Consensus       320 i~iwd~~~~~  329 (435)
T 4e54_B          320 IRVYSASQWD  329 (435)
T ss_dssp             EEEEESSSSS
T ss_pred             EEEEECCCCc
Confidence            7788877653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.19  E-value=1.8  Score=39.32  Aligned_cols=213  Identities=10%  Similarity=-0.035  Sum_probs=106.5

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      .+..||+. +.........                ....-++++.. ++.||+....      ...+++||+ ++.....
T Consensus        79 ~i~~~~~~-g~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~  134 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYTLPN----------------PDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREY  134 (299)
T ss_dssp             EEEEECTT-SCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred             eEEEECCC-CcEEEEeCCC----------------cCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEe
Confidence            48888886 5655544211                01222334443 4778886532      234999999 6666655


Q ss_pred             ecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc-ceEEEEcCcEEEEEc
Q 010847          125 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFG  202 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~G  202 (499)
                      ...   .....-+.++.. +++||+...      ..+.+++||+ +.+......    +..... ..++...++.+|+..
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEE
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEc
Confidence            421   111122233333 467887542      1346899998 777765532    111122 233333455577754


Q ss_pred             CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcc-cEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCC
Q 010847          203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~  280 (499)
                      ..     .+.+++||+ ++....+..    +..... ++++.. ++.+|+....     .+.+.+||+ +.....+....
T Consensus       201 ~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~  264 (299)
T 2z2n_A          201 II-----GNKIGRITT-SGEITEFKI----PTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQI  264 (299)
T ss_dssp             TT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECSS
T ss_pred             cC-----CceEEEECC-CCcEEEEEC----CCCCCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCCC
Confidence            32     246999998 777665421    111111 233332 4577776421     235889998 45544442211


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          281 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       281 ~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .       ......+.. .+..|++... .    +.+.+|++...
T Consensus       265 ~-------~~~~~~i~~-~~g~l~v~~~-~----~~l~~~~~~~~  296 (299)
T 2z2n_A          265 K-------SAEPHGICF-DGETIWFAME-C----DKIGKLTLIKD  296 (299)
T ss_dssp             S-------SCCEEEEEE-CSSCEEEEET-T----TEEEEEEEC--
T ss_pred             C-------CCccceEEe-cCCCEEEEec-C----CcEEEEEcCcc
Confidence            0       111122222 3345665432 2    36888887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.19  E-value=0.1  Score=50.05  Aligned_cols=151  Identities=10%  Similarity=-0.009  Sum_probs=69.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.++.|..+.   .+........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus        22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTATN------QVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSSS------CBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred             CCCEEEEecCCC------EEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence            455666666432      3778888888887765   33222222233333  45666776643      3588889887


Q ss_pred             Ce-eEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc-eEecccCCCCCCcCcccEEEEE-C
Q 010847          170 MT-WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-D  245 (499)
Q Consensus       170 ~~-W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~  245 (499)
                      .. |........   .......+.+ .++.+++.|+.+     ..+.+||+.+.. |..+.... .+....-.+++.. +
T Consensus        87 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           87 DGTWKQTLVLLR---LNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPN  157 (377)
T ss_dssp             --CCCCEEECCC---CSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTT
T ss_pred             CCceeeeeEecc---cCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCC
Confidence            76 544332111   1122223333 344466666654     357888877654 33221101 1111112223332 4


Q ss_pred             CEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          246 ENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       246 ~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      +.+++.|+.++     .+.+||+.+.
T Consensus       158 ~~~l~~~~~d~-----~i~iwd~~~~  178 (377)
T 3dwl_C          158 NVLLAAGCADR-----KAYVLSAYVR  178 (377)
T ss_dssp             SSEEEEEESSS-----CEEEEEECCS
T ss_pred             CCEEEEEeCCC-----EEEEEEEEec
Confidence            56777776543     3677776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.16  E-value=1.2  Score=41.87  Aligned_cols=108  Identities=8%  Similarity=-0.079  Sum_probs=55.3

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.++.-...-   ...  .....++.+  ++..++.|+.+      ..+.+||+.+
T Consensus        43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~---~~h--~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKDS------SASVWYSLNGERLGTL---DGH--TGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESSS------CEEEEETTTCCEEEEE---CCC--SSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred             CCCEEEEEeCCC------EEEEEeCCCchhhhhh---hhc--CCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence            345666665432      3888998887644332   111  111222233  35566666643      3689999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .+-......     ...-.++....++..++.++.+.......+.+||+.+.
T Consensus       106 ~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          106 GQCVATWKS-----PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             CCEEEEEEC-----SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CcEEEEeec-----CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            765443321     11122233333444555555432223356888877554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.14  E-value=0.32  Score=36.02  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      .++.++..++.++...+.++..+...+..++.+....+.....++++|..+
T Consensus         9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL   59 (97)
T 2eqb_B            9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555555555555555555555555555555554444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.12  E-value=0.71  Score=43.17  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=77.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+|+.++.      ...++++|+.+++......   .+....-+.++.. ++ .+|+.+..      .+.+++||+.+
T Consensus        10 ~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNY------PNNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEET------TTEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCEEEEEeCC------CCeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence            5678887764      3459999999987654332   1210011233332 33 57777542      34699999998


Q ss_pred             CeeEEeeecCCCCC--CCccceEEEEcC-cEEEEEcCC---CCC---CCCCcEEEEECCCCceEecccCCCCCCcCcccE
Q 010847          170 MTWDAVEVTQTPPA--PRYDHSAALHAN-RYLIVFGGC---SHS---IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  240 (499)
Q Consensus       170 ~~W~~~~~~~~~p~--~r~~~~~~~~~~-~~l~v~GG~---~~~---~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  240 (499)
                      .+-......+..|.  ...-+.++...+ +++|+.+..   ...   ...+.+++||+.++.-.......  +.++.-++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~  152 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYL  152 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCC
T ss_pred             CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccc
Confidence            87543322111110  111123333334 445554411   000   01257999998874422211001  11222223


Q ss_pred             EEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEE
Q 010847          241 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       241 ~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  275 (499)
                      ++.. ++++|+.++        +++++|+.+..-..
T Consensus       153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          153 MRAADDGSLYVAGP--------DIYKMDVKTGKYTV  180 (349)
T ss_dssp             EEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred             eeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence            3332 455666422        38889988776443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.11  E-value=0.71  Score=43.98  Aligned_cols=185  Identities=11%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      +++.++.|+.++      .+.++|+.++.-...-   ...  .....++.+   ++.+++.||.+      ..+.+||+.
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~---~~h--~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSY---NAH--SSEVNCVAACPGKDTIFLSCGED------GRILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEE---CCC--SSCEEEEEECTTCSSCEEEEETT------SCEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCC--CCCEEEEEEccCCCceeeeeccC------CceEEEECC
Confidence            456667776533      3889999888644332   111  111222222   23467777654      248888887


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  244 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  244 (499)
                      +.+-....   ..........++.+.  ++.+++.|+.+     ..|.+||+.+..-...     ..........+.+  
T Consensus       213 ~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~~-----~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          213 KPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQT-----SAVHSQNITGLAYSY  279 (357)
T ss_dssp             SSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCEE-----ECCCSSCEEEEEECS
T ss_pred             CCceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeEE-----EeccceeEEEEEEcC
Confidence            76432211   111111222333332  34467777654     3588999876542211     0111111122222  


Q ss_pred             CC-EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcCCCCCCCceEEEEEC
Q 010847          245 DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRL  322 (499)
Q Consensus       245 ~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~  322 (499)
                      ++ .+++.|+.+.     .+.+||+.+......  +.       +......+... .+..+++.||.++    .+.++++
T Consensus       280 ~~~~~lasgs~D~-----~i~iwd~~~~~~~~~--~~-------H~~~V~~vafsP~d~~~l~s~s~Dg----~v~iW~~  341 (357)
T 4g56_B          280 HSSPFLASISEDC-----TVAVLDADFSEVFRD--LS-------HRDFVTGVAWSPLDHSKFTTVGWDH----KVLHHHL  341 (357)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTSCEEEEE--CC-------CSSCEEEEEECSSSTTEEEEEETTS----CEEEEEC
T ss_pred             CCCCEEEEEeCCC-----EEEEEECCCCcEeEE--CC-------CCCCEEEEEEeCCCCCEEEEEcCCC----eEEEEEC
Confidence            23 5566665433     478889887754332  11       11122223332 1233566677765    5777776


Q ss_pred             CC
Q 010847          323 KP  324 (499)
Q Consensus       323 ~~  324 (499)
                      ..
T Consensus       342 ~~  343 (357)
T 4g56_B          342 PS  343 (357)
T ss_dssp             C-
T ss_pred             CC
Confidence            43

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.10  E-value=2.2  Score=39.91  Aligned_cols=237  Identities=10%  Similarity=-0.038  Sum_probs=119.7

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCC--cE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETN--LC  121 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W  121 (499)
                      +.+.++|+.+++.........                -..-+.++.. ++.||+....      ...+.+||+...  .-
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~----------------~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~  126 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNL----------------FYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPL  126 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTT----------------CSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCS
T ss_pred             CcEEEEECCCCeEEeccCCCc----------------cCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEE
Confidence            369999999888654322110                1112233332 5678887643      245999998665  22


Q ss_pred             EEeecC---CCCCCCCcce-EEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCC----CCCCccceEE
Q 010847          122 GVMETS---GKVPVARGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP----PAPRYDHSAA  191 (499)
Q Consensus       122 ~~~~~~---g~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~  191 (499)
                      ..+...   |..+...... .+++.  ++.||+..++.     .+.|.+||.....-..+...+..    +........+
T Consensus       127 ~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi  201 (329)
T 3fvz_A          127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL  201 (329)
T ss_dssp             EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEE
T ss_pred             EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEE
Confidence            333211   1111112222 23333  57899987532     34689999654433333322211    1122223333


Q ss_pred             EE-cC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCC--CCCcceEEEEE
Q 010847          192 LH-AN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN--NNGCQETIVLN  267 (499)
Q Consensus       192 ~~-~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~d  267 (499)
                      .+ .+ +.||+....     .+.|.+||+.+++....-  ........-.+++...+.+|+..|...  ......+.++|
T Consensus       202 a~d~~~g~l~v~d~~-----~~~I~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          202 ALVPHLDQLCVADRE-----NGRIQCFKTDTKEFVREI--KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             EEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEE--CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred             EEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEE--eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence            44 34 778887643     257999999866654421  111111122234444567777766422  22234688999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +.++.....-....    ... .....+.++.+..|||....++    .+++|++..
T Consensus       275 ~~~g~~~~~~~~~~----~~~-~~p~~ia~~~dG~lyvad~~~~----~I~~~~~~~  322 (329)
T 3fvz_A          275 FSSGEIIDVFKPVR----KHF-DMPHDIVASEDGTVYIGDAHTN----TVWKFTLTE  322 (329)
T ss_dssp             TTTCCEEEEECCSS----SCC-SSEEEEEECTTSEEEEEESSSC----CEEEEEEEE
T ss_pred             cCCCeEEEEEcCCC----Ccc-CCeeEEEECCCCCEEEEECCCC----EEEEEeCCc
Confidence            88877654321100    011 1122334444447787665433    788888753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.04  E-value=0.67  Score=48.96  Aligned_cols=64  Identities=8%  Similarity=-0.032  Sum_probs=33.6

Q ss_pred             cEEEEECCC-CceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          212 DLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       212 ~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      .++++|+.+ ..-..+.. + .........++.-+++.++++..+......+++++|+.+.....+.
T Consensus       264 ~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDL-G-KEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             EEEEECSSTTCCCEEECC-C-SCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCCceEEecC-C-CCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence            688889887 76554421 1 0111111112223334444443333334467999999998876653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.03  E-value=2  Score=39.00  Aligned_cols=224  Identities=9%  Similarity=-0.011  Sum_probs=114.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+....     ...+.+||+. +.+.......                ....-++++.. ++.||+....      ..
T Consensus        27 ~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~   78 (299)
T 2z2n_A           27 KVWITQHK-----ANMISCINLD-GKITEYPLPT----------------PDAKVMCLTISSDGEVWFTENA------AN   78 (299)
T ss_dssp             CEEEEETT-----TTEEEEECTT-CCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TT
T ss_pred             CEEEEecC-----CCcEEEEcCC-CCeEEecCCc----------------ccCceeeEEECCCCCEEEeCCC------CC
Confidence            66665321     1358899998 7777655321                01122333332 5678876432      23


Q ss_pred             eEEEEECCCCcEEEeecCCCCCC-CCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      .+++||+. +......    .|. ...-+.++.. ++.||+....      .+.+++||+ +.+........   ....-
T Consensus        79 ~i~~~~~~-g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~  143 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYT----LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYP  143 (299)
T ss_dssp             EEEEECTT-SCEEEEE----CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCE
T ss_pred             eEEEECCC-CcEEEEe----CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCC
Confidence            48999986 5555554    221 1122333333 4678886432      246889998 66665543211   11222


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      ..++...++.+|+....     .+.+++||+ ++....+......   ..-.+++.. ++.+|+....     .+.+++|
T Consensus       144 ~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~-----~~~i~~~  209 (299)
T 2z2n_A          144 SFITLGSDNALWFTENQ-----NNAIGRITE-SGDITEFKIPTPA---SGPVGITKGNDDALWFVEII-----GNKIGRI  209 (299)
T ss_dssp             EEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETT-----TTEEEEE
T ss_pred             ceEEEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEeeCCCCC---CcceeEEECCCCCEEEEccC-----CceEEEE
Confidence            33444445667775421     246999998 6766654211111   111233333 3567776432     2368899


Q ss_pred             ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       267 d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      |+ +.....+.. +.      .......+..+.+..|++....    .+.+++||++
T Consensus       210 ~~-~g~~~~~~~-~~------~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~~  254 (299)
T 2z2n_A          210 TT-SGEITEFKI-PT------PNARPHAITAGAGIDLWFTEWG----ANKIGRLTSN  254 (299)
T ss_dssp             CT-TCCEEEEEC-SS------TTCCEEEEEECSTTCEEEEETT----TTEEEEEETT
T ss_pred             CC-CCcEEEEEC-CC------CCCCceeEEECCCCCEEEeccC----CceEEEECCC
Confidence            99 776665422 11      0112223344433346664322    2368888873

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.97  E-value=0.35  Score=35.05  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847          411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      ++.++.+........++....+.....+..+.+..+..++++++   .++.+++.+..++......|+++
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq---~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLK---GTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444545444444433   23334444444444444444433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.96  E-value=4.3  Score=42.57  Aligned_cols=125  Identities=11%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCCC--CCC---CcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PVA---RGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +.++.++.||+...       ...++.+|..|++  |+.-......  +..   ....+.++.+++||+...       .
T Consensus        65 ~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d  130 (689)
T 1yiq_A           65 TPIVVDGVMYTTGP-------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D  130 (689)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred             cCEEECCEEEEEcC-------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence            34567999999765       2349999998874  8754311000  000   112234557888887542       2


Q ss_pred             CcEEEEECCCCe--eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          160 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       160 ~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ..++.+|..|++  |+.-.............+.++. ++.+|+-.+.........++.||..|++  |+.-
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            369999998874  8765320110001111223334 5645553222111234579999998876  8763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.93  E-value=3.8  Score=43.46  Aligned_cols=189  Identities=4%  Similarity=-0.029  Sum_probs=95.8

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCC------
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLET------  118 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t------  118 (499)
                      .+.+||+.++++........           ....+...-+++... ++.|++. ....      -+++||+.+      
T Consensus       393 GL~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~i~~d~~g~lWig-T~~~------Gl~~~~~~~~~~~~~  454 (758)
T 3ott_A          393 SINRYDYATRQFIHYNIVDN-----------TGTYNTNWTYYIFEDTAGQLWIS-TCLG------GIFVVDKHKLMQSTS  454 (758)
T ss_dssp             EEEEEETTTTEEEEEEEECC-----------C--CBSSSEEEEEECTTSEEEEE-ESSS------CEEEEEHHHHHHCCS
T ss_pred             cHhhcCcCCCcEEEeecCCC-----------cCCCCCceEEEEEEcCCCCEEEE-ECCC------ceEEEccccccccCC
Confidence            58899999999987754211           000011122233332 4677773 2211      288888653      


Q ss_pred             CcEE---EeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc
Q 010847          119 NLCG---VMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  194 (499)
Q Consensus       119 ~~W~---~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~  194 (499)
                      ..+.   .......++... -++++. -++.|+++||..      +-+++||+.+.++..+... ..+....-.+++...
T Consensus       455 ~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~  526 (758)
T 3ott_A          455 GQYIAEQNYSVHNGLSGMF-INQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDE  526 (758)
T ss_dssp             SEEECSEEECGGGTCSCSC-EEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECT
T ss_pred             cceecccccccccccccce-eeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECC
Confidence            2221   111111122211 112222 246899876643      3489999999998876421 111111122333334


Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      ++.|++. ..      +-+.+||+.+..+..... ..+|. ...++++.-++.|++...       +-+.+||+.+....
T Consensus       527 ~g~lWig-t~------~Gl~~~~~~~~~~~~~~~-~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~  590 (758)
T 3ott_A          527 DGLLWVG-FH------GGVMRINPKDESQQSISF-GSFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDAR  590 (758)
T ss_dssp             TSCEEEE-ET------TEEEEECC--CCCCBCCC-CC----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEE
T ss_pred             CCCEEEE-ec------CceEEEecCCCceEEecc-cCCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeE
Confidence            5667753 22      248999998888776532 22332 222333334677777542       23789999988766


Q ss_pred             Ee
Q 010847          275 IL  276 (499)
Q Consensus       275 ~l  276 (499)
                      ..
T Consensus       591 ~~  592 (758)
T 3ott_A          591 QQ  592 (758)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.84  E-value=1.1  Score=41.18  Aligned_cols=219  Identities=8%  Similarity=0.028  Sum_probs=103.4

Q ss_pred             ccccCCCCCeEEccc-----CCCCCC----ccc-ceEEEEcCCCCCcccCcEEEEEcCCCceEEe-eeCcccccCccccC
Q 010847            6 WHLELPYDLWVTLPV-----SGARPS----PRY-KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL-RLETELDADKTEDS   74 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~-----~~~~p~----~r~-~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~   74 (499)
                      +.||+..+++..+..     ....|.    ... +.||+....      +.+++||+. ++...+ .....         
T Consensus        49 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~---------  112 (314)
T 1pjx_A           49 LRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSE---------  112 (314)
T ss_dssp             EEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTT---------
T ss_pred             EEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCC---------
Confidence            567887888776543     101111    112 356665431      258999998 877655 32210         


Q ss_pred             CCCCCCCCccceeEEEE-CCEEEEEcccCC---------CCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--
Q 010847           75 GLLEVLPPMSDHCMVKW-GTKLLILGGHYK---------KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--  142 (499)
Q Consensus        75 ~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--  142 (499)
                         ..+ ...-+.++.. ++.||+......         .......+++||+. ++...+..  ....   ...++..  
T Consensus       113 ---~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~---~~~i~~~~~  182 (314)
T 1pjx_A          113 ---GRR-MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF---PNGIAVRHM  182 (314)
T ss_dssp             ---SCB-CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS---EEEEEEEEC
T ss_pred             ---Ccc-ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCC---cceEEEecc
Confidence               001 1112233332 567887654221         01112469999987 66655431  1111   1223333  


Q ss_pred             ---CC-EEEEEcCcCCCCCccCcEEEEECC-CCeeEEeeecCCCCCC--CccceEEEEcCcEEEEEcCCCCCCCCCcEEE
Q 010847          143 ---GS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFNDLHV  215 (499)
Q Consensus       143 ---~~-~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~  215 (499)
                         ++ .||+....      .+.+++||+. +.+..........+..  ..-..++...++.+|+....     .+.|.+
T Consensus       183 ~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~  251 (314)
T 1pjx_A          183 NDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEV  251 (314)
T ss_dssp             TTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEE
T ss_pred             cCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEE
Confidence               23 56766432      3468899875 4544322211111211  11122333345667776422     146899


Q ss_pred             EECCCCceE-ecccCCCCCCcCcccEEEEE-CCE-EEEEeCCCCCCCcceEEEEECCCC
Q 010847          216 LDLQTNEWS-QPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       216 ~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      ||+.++... .+.    .+. ..-.+++.. ++. +|+....+     +.+++|++...
T Consensus       252 ~d~~~g~~~~~~~----~~~-~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~  300 (314)
T 1pjx_A          252 FGPDGGQPKMRIR----CPF-EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRN  300 (314)
T ss_dssp             ECTTCBSCSEEEE----CSS-SCEEEEEECTTSSEEEEEETTT-----TEEEEEECSSC
T ss_pred             EcCCCCcEeEEEe----CCC-CCceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCC
Confidence            998755432 221    111 112223322 334 77665422     36888987653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.83  E-value=2.8  Score=39.68  Aligned_cols=136  Identities=13%  Similarity=0.017  Sum_probs=66.0

Q ss_pred             cEEEEECCCCeeEEeeecCCCCCCCccceEEEE---cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCc
Q 010847          161 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA  237 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~  237 (499)
                      .+.++|+.+.+-...-. +.    .....++.+   .++.+++.|+.+     ..+.+||+.+......-. +   ....
T Consensus       177 ~v~lwd~~~~~~~~~~~-~h----~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~~-~---h~~~  242 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-GH----GADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAFE-T---HESD  242 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-CC----SSCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEEC-C---CSSC
T ss_pred             cEEEEeCCCCeEEEEEc-CC----CCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEec-C---CCCC
Confidence            58889998876432211 11    111122222   133467777765     358899998876543210 0   0111


Q ss_pred             ccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCce
Q 010847          238 GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  316 (499)
Q Consensus       238 ~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  316 (499)
                      -.+++.. ++..++.|+.+.     .+.+||+.+..-..+-....      .......+....+..+++.|+.++    .
T Consensus       243 v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l~~g~~d~----~  307 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSKES------IIFGASSVDFSLSGRLLFAGYNDY----T  307 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCTT------CCSCEEEEEECTTSSEEEEEETTS----C
T ss_pred             eEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCC------cccceeEEEEeCCCCEEEEEECCC----c
Confidence            1122222 456777776543     37788887764322211110      011222333333334555666554    6


Q ss_pred             EEEEECCCC
Q 010847          317 VFVMRLKPR  325 (499)
Q Consensus       317 ~~~~~~~~~  325 (499)
                      +.+||+...
T Consensus       308 i~vwd~~~~  316 (354)
T 2pbi_B          308 INVWDVLKG  316 (354)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            788887543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.82  E-value=0.55  Score=35.68  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      ++.++...+....+.+.++..++..++.++....+.+..+.+.+.+|
T Consensus        28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL   74 (101)
T 3u59_A           28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444444443344444444433333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.78  E-value=2.2  Score=39.88  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      +.+++.|+.+      ..+.+||+.++.-...-.  ...   ....++.+   ++.+++.|+.+      ..+.+||+.+
T Consensus        85 ~~~l~~~~~d------g~i~v~d~~~~~~~~~~~--~~~---~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSR------GIIRIINPITMQCIKHYV--GHG---NAINELKFHPRDPNLLLSVSKD------HALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETT------CEEEEECTTTCCEEEEEE--SCC---SCEEEEEECSSCTTEEEEEETT------SCEEEEETTT
T ss_pred             CCEEEEecCC------CEEEEEEchhceEeeeec--CCC---CcEEEEEECCCCCCEEEEEeCC------CeEEEEEeec
Confidence            4677777753      348999988775433221  111   11222223   45677777653      3599999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      .+-...-.  ...........+.+ .++..++.|+.+     +.+.+||+.+..
T Consensus       148 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  194 (366)
T 3k26_A          148 DTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR  194 (366)
T ss_dssp             TEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred             CeEEEEec--ccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence            76543321  11112222233333 344466666654     368999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.76  E-value=2.7  Score=40.33  Aligned_cols=151  Identities=17%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      .+++.|+.++      .+.+||+.++.....-.  .... .....++.+  ++.+++.|+.+      ..+.+||+.+.+
T Consensus       145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  209 (402)
T 2aq5_A          145 NVLLSAGCDN------VILVWDVGTGAAVLTLG--PDVH-PDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGT  209 (402)
T ss_dssp             TEEEEEETTS------CEEEEETTTTEEEEEEC--TTTC-CSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTE
T ss_pred             CEEEEEcCCC------EEEEEECCCCCccEEEe--cCCC-CCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCc
Confidence            4777776533      39999999886543321  0111 111222333  45666666643      369999998876


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce--EecccCCCCCCcCcccEEEEE-C-CE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW--SQPEIKGDLVTGRAGHAGITI-D-EN  247 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~-~-~~  247 (499)
                      -...-..+.  .......++...++.+++.|...  ..-..+.+||+.+..-  ....    ......-.+++.. + ..
T Consensus       210 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~  281 (402)
T 2aq5_A          210 VVAEKDRPH--EGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNI  281 (402)
T ss_dssp             EEEEEECSS--CSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTE
T ss_pred             eeeeeccCC--CCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCE
Confidence            433221111  11112334444567677766211  1124689999876432  1110    1111112223333 2 34


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCc
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      +++.|+.++     .+.+||+.+..
T Consensus       282 l~~~g~~dg-----~i~i~d~~~~~  301 (402)
T 2aq5_A          282 VYLCGKGDS-----SIRYFEITSEA  301 (402)
T ss_dssp             EEEEETTCS-----CEEEEEECSST
T ss_pred             EEEEEcCCC-----eEEEEEecCCC
Confidence            556665332     47788877765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.75  E-value=2.5  Score=39.16  Aligned_cols=104  Identities=11%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             CCE-EEEEcccCCCCCCCceEEEEEC-CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTK-LLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~-iyv~GG~~~~~~~~~~~~~yd~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++. +++.|+.++      .+.+||+ .++....+.   ..+....-.+++...+.+++.|+.+      ..+.+||+.+
T Consensus        67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEETTS------CEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred             CCCcEEEEEcCCC------eEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence            556 666676432      3999999 888765543   2001111122222225555566543      3577887654


Q ss_pred             Ce-------eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCC
Q 010847          170 MT-------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  220 (499)
Q Consensus       170 ~~-------W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  220 (499)
                      ..       ...+.   ....+ .....+.+..+. ++.|+.+     ..+.+||+.+
T Consensus       132 ~~~~~~~~~~~~~~---~~~~~-~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~  179 (342)
T 1yfq_A          132 YGDGVIAVKNLNSN---NTKVK-NKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPL  179 (342)
T ss_dssp             HTTBCEEEEESCSS---SSSSC-CCEEEEEECSSE-EEEEEST-----TEEEEEESSC
T ss_pred             cccccccccCCeee---EEeeC-CceEEEEecCCc-EEEEeCC-----CeEEEEECCc
Confidence            00       11111   11111 122333444454 5555443     3689999877

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.71  E-value=2.8  Score=39.26  Aligned_cols=190  Identities=15%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++.+++.||.+      ..+.+||+.+..  ....... ...... -.++.. -++. ++.|+.+      ..+.++|+.
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~-~~h~~~-v~~~~~~~~~~-l~s~s~d------~~i~~wd~~  172 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSREL-AGHTGY-LSCCRFLDDNQ-IVTSSGD------TTCALWDIE  172 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEE-ECCSSC-EEEEEEEETTE-EEEEETT------SCEEEEETT
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEe-cCCCcc-EEEEEECCCCc-EEEEECC------CcEEEEECC
Confidence            45566677653      348888887653  1111100 001111 111222 2455 4444432      358899998


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  247 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  247 (499)
                      +..-...-. +   ....-.+++...++.+++.|+.+     ..+.+||+.+..-...- .+   ....-.+++.. ++.
T Consensus       173 ~~~~~~~~~-~---h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~-~~---h~~~v~~v~~~p~~~  239 (340)
T 1got_B          173 TGQQTTTFT-G---HTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTF-TG---HESDINAICFFPNGN  239 (340)
T ss_dssp             TTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEE-CC---CSSCEEEEEECTTSS
T ss_pred             CCcEEEEEc-C---CCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEE-cC---CcCCEEEEEEcCCCC
Confidence            876433221 1   11111223333455577777754     35889998776533211 01   01111122222 456


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      .++.|+.++     .+.+||+.+..-...-....      .......+....+..+++.|+.++    .+.++|+..
T Consensus       240 ~l~s~s~d~-----~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~  301 (340)
T 1got_B          240 AFATGSDDA-----TCRLFDLRADQELMTYSHDN------IICGITSVSFSKSGRLLLAGYDDF----NCNVWDALK  301 (340)
T ss_dssp             EEEEEETTS-----CEEEEETTTTEEEEEECCTT------CCSCEEEEEECTTSSEEEEEETTS----EEEEEETTT
T ss_pred             EEEEEcCCC-----cEEEEECCCCcEEEEEccCC------cccceEEEEECCCCCEEEEECCCC----eEEEEEccc
Confidence            777776443     37788887764322111110      011223333433334566677654    688888754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.69  E-value=4.6  Score=41.75  Aligned_cols=193  Identities=10%  Similarity=-0.033  Sum_probs=96.7

Q ss_pred             ceEEEEECCC------CcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCC--ccCcEEEEECC-CC---eeEEee
Q 010847          109 MIVRFIDLET------NLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK--LLNDVHFLDLE-TM---TWDAVE  176 (499)
Q Consensus       109 ~~~~~yd~~t------~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~v~~yd~~-t~---~W~~~~  176 (499)
                      ..++++|+.+      +....+...+   ..........-+++.+++........  ..++++++|+. +.   ....+.
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDA---HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSC---SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecC---CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            5699999988      6655553011   11111112222444333333222111  13579999998 56   444443


Q ss_pred             ecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC-CCCCcCc---ccEEEEE-CCEEEEE
Q 010847          177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG-DLVTGRA---GHAGITI-DENWYIV  251 (499)
Q Consensus       177 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~-~~p~~r~---~~~~~~~-~~~l~v~  251 (499)
                      ..    ........+...|+.+|+.+..++   ...+|.+|+.++.+..+.... ....+..   ....+.. ++.+++.
T Consensus       238 ~~----~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~  310 (662)
T 3azo_A          238 GG----PEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV  310 (662)
T ss_dssp             EE----TTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred             CC----CCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence            21    011122233333555666665432   347999999888888764211 0101111   1123333 5666666


Q ss_pred             eCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEE-EEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          252 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       252 GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      +..    ....+|.+|+.+.....+....         .....+ ..+++..+++.++.+  ....+|.+|+....
T Consensus       311 ~~~----~~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~  371 (662)
T 3azo_A          311 HGK----GAAVLGILDPESGELVDAAGPW---------TEWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGR  371 (662)
T ss_dssp             EBS----SSCEEEEEETTTTEEEECCSSC---------CEEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCC
T ss_pred             EEc----CccEEEEEECCCCcEEEecCCC---------CeEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCc
Confidence            543    3457899999888776664321         111222 445554555544432  23467888875543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=94.68  E-value=3.6  Score=40.30  Aligned_cols=184  Identities=12%  Similarity=0.075  Sum_probs=93.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.+++.|+.++      .+.+||+.+..-...-   ..... .-.+++.. ++..++.|+.+      ..+.+||+.+.
T Consensus       279 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~-~v~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~  342 (464)
T 3v7d_B          279 HGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTD-RIYSTIYDHERKRCISASMD------TTIRIWDLENG  342 (464)
T ss_dssp             ETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSS-CEEEEEEETTTTEEEEEETT------SCEEEEETTTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCC-CEEEEEEcCCCCEEEEEeCC------CcEEEEECCCC
Confidence            445556666432      3999999887643332   11111 11222222 44566666643      35999999887


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  250 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  250 (499)
                      +-...-     ........++.+.++ .++.|+.+     +.+.+||+.+..-....   . ........+...++.+++
T Consensus       343 ~~~~~~-----~~h~~~v~~~~~~~~-~l~s~s~d-----g~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~  407 (464)
T 3v7d_B          343 ELMYTL-----QGHTALVGLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSY---H-HTNLSAITTFYVSDNILV  407 (464)
T ss_dssp             EEEEEE-----CCCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEE---E-CTTCCCEEEEEECSSEEE
T ss_pred             cEEEEE-----eCCCCcEEEEEEcCC-EEEEEeCC-----CcEEEEECCCCceeeee---c-CCCCccEEEEEeCCCEEE
Confidence            533221     112222344455555 56666654     35889998876532211   0 111122233444667777


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEEC
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  322 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  322 (499)
                      .|+ +     ..+.+||+.++.-......+.       ......+..++ ..+++.|+.++  ..-++.+|+
T Consensus       408 ~~~-d-----g~i~iwd~~~g~~~~~~~~~~-------~~~v~~v~~~~-~~l~~~~~~~g--~~~i~~ldf  463 (464)
T 3v7d_B          408 SGS-E-----NQFNIYNLRSGKLVHANILKD-------ADQIWSVNFKG-KTLVAAVEKDG--QSFLEILDF  463 (464)
T ss_dssp             EEE-T-----TEEEEEETTTCCEEESCTTTT-------CSEEEEEEEET-TEEEEEEEETT--EEEEEEEEC
T ss_pred             Eec-C-----CeEEEEECCCCcEEehhhccC-------CCcEEEEEecC-CEEEEEEEeCC--eEEEEEeec
Confidence            765 2     258899998886543211111       12233334444 45666665544  234556664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.67  E-value=3.3  Score=39.88  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             CCCcccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEccc
Q 010847           24 RPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGH  101 (499)
Q Consensus        24 ~p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~  101 (499)
                      .|.|-...+|+.-... ....+.+.++|+.+++-...-+.+                  ...| ++..  +..+|+...+
T Consensus        39 ~~~pd~~~vyV~~~~~-~~~~~~V~ViD~~t~~v~~~I~vG------------------~~P~-va~spDG~~lyVan~~   98 (386)
T 3sjl_D           39 APAPDARRVYVNDPAH-FAAVTQQFVIDGEAGRVIGMIDGG------------------FLPN-PVVADDGSFIAHASTV   98 (386)
T ss_dssp             CCCCCTTEEEEEECGG-GCSSEEEEEEETTTTEEEEEEEEC------------------SSCE-EEECTTSSCEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcc-cCCCCEEEEEECCCCeEEEEEECC------------------CCCc-EEECCCCCEEEEEccc
Confidence            3445555888875421 111358999999988754433322                  1124 3333  4568887532


Q ss_pred             CCC---CCCCceEEEEECCCCcEEEeecCCC---CCCCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCee
Q 010847          102 YKK---SSDSMIVRFIDLETNLCGVMETSGK---VPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  172 (499)
Q Consensus       102 ~~~---~~~~~~~~~yd~~t~~W~~~~~~g~---~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W  172 (499)
                      ...   +...+.+.++|+.+++-..--..+.   ......-+.++.  .+.++|+....     ..+.+.++|+.+++-
T Consensus        99 ~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v  172 (386)
T 3sjl_D           99 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF  172 (386)
T ss_dssp             EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred             ccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence            110   0013569999999987543221111   001112222333  24578886321     135688888887754

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.67  E-value=0.6  Score=35.43  Aligned_cols=66  Identities=9%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE  448 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  448 (499)
                      +..|+.++............+...........+.++..+.+.++.++.++....+++......+.+
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~   76 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444443333333334444444444444444444444554555544444444444444333

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.65  E-value=0.41  Score=43.35  Aligned_cols=182  Identities=7%  Similarity=-0.009  Sum_probs=87.3

Q ss_pred             ccccCCC-CCeEEcccCCC---CCCcccc---eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCC
Q 010847            6 WHLELPY-DLWVTLPVSGA---RPSPRYK---KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   78 (499)
Q Consensus         6 ~~~~~~~-~~W~~~~~~~~---~p~~r~~---~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      +.+|+.. .+...+.....   +....+.   +.+++++.... ....++.+|+.++.-..+...               
T Consensus        65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---------------  128 (297)
T 2ojh_A           65 YRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKN---------------  128 (297)
T ss_dssp             EEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSS---------------
T ss_pred             EEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecC---------------
Confidence            4556666 66655542211   1112221   44555543211 345788999887765444321               


Q ss_pred             CCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC-EEEEEcCcCC
Q 010847           79 VLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDR  154 (499)
Q Consensus        79 ~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~-~lyv~GG~~~  154 (499)
                         .. .+.++..  +..|++.++...    ...++.+|+.++....+.   ..+.. . ..++. -++ .|++.+..+.
T Consensus       129 ---~~-~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~---~~~~~-~-~~~~~s~dg~~l~~~~~~~~  195 (297)
T 2ojh_A          129 ---LP-SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLT---HGEGR-N-DGPDYSPDGRWIYFNSSRTG  195 (297)
T ss_dssp             ---SS-EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECC---CSSSC-E-EEEEECTTSSEEEEEECTTS
T ss_pred             ---CC-ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcc---cCCCc-c-ccceECCCCCEEEEEecCCC
Confidence               11 1222222  345665554332    234888888887766554   22211 1 12222 234 4555443332


Q ss_pred             CCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCC------CCCcEEEEECCCCceEec
Q 010847          155 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSI------FFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       155 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~------~~~~i~~~d~~~~~W~~~  226 (499)
                          ...++.+++.+.....+...     . .....+.+ .++..+++++.....      ....++++|+.+.....+
T Consensus       196 ----~~~i~~~~~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          196 ----QMQIWRVRVDGSSVERITDS-----A-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             ----SCEEEEEETTSSCEEECCCC-----S-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             ----CccEEEECCCCCCcEEEecC-----C-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence                34688888777666555321     1 11222233 344344444432211      124699999988776554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.63  E-value=4.7  Score=41.45  Aligned_cols=124  Identities=14%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEEC-CCC--cEEEeecCCC--CCCCCc---ceEEEE--ECCE----EEEEcCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETN--LCGVMETSGK--VPVARG---GHSVTL--VGSR----LIIFGGE  152 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~--~W~~~~~~g~--~p~~r~---~~~~~~--~~~~----lyv~GG~  152 (499)
                      +.++.++.||+.+..      ...++.+|. .++  .|+.-.....  .+..++   ....++  .+++    ||+... 
T Consensus        57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-  129 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-  129 (599)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence            446679999998653      123999999 777  4876542110  010111   122344  4666    776432 


Q ss_pred             CCCCCccCcEEEEECCCCe--eEEeeecCCCCCC-CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          153 DRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       153 ~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                            ...++.+|..|++  |+.-..  ..... ....+.++. ++.+|+-.+.........++.||..+++  |+.-
T Consensus       130 ------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          130 ------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             ------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence                  2369999998775  875421  10001 111122334 5645543221111123579999998876  8764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.58  E-value=1.8  Score=41.50  Aligned_cols=196  Identities=14%  Similarity=0.088  Sum_probs=92.4

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCc------EEEeecCCCCC-CCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEE
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVP-VARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVH  163 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~------W~~~~~~g~~p-~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~  163 (499)
                      +.+++.|+.++      .+.+||+.+..      -....  .... ....-.+++.. + +.+++.|+.+      ..+.
T Consensus       126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~  191 (416)
T 2pm9_A          126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSS------NFAS  191 (416)
T ss_dssp             TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEE
T ss_pred             CCEEEEEcCCC------eEEEEECCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEE
Confidence            56777776532      38888987764      11110  0111 11111222322 2 4677777753      3599


Q ss_pred             EEECCCCeeEEeeecCCCCCC-CccceEEEEc-C-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCC--CcCcc
Q 010847          164 FLDLETMTWDAVEVTQTPPAP-RYDHSAALHA-N-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGRAG  238 (499)
Q Consensus       164 ~yd~~t~~W~~~~~~~~~p~~-r~~~~~~~~~-~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r~~  238 (499)
                      +||+.+.+-...-........ ......+.+. + ..+++.|+.++.  ...+.+||+.+..-..    ....  ....-
T Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~v  265 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPL----QTLNQGHQKGI  265 (416)
T ss_dssp             EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCS----BCCCSCCSSCE
T ss_pred             EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCc----EEeecCccCce
Confidence            999988765433221000000 2222333333 3 246666665421  1268889987643111    0111  11111


Q ss_pred             cEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCce-EEEEEcCCCCCCCc
Q 010847          239 HAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNN  315 (499)
Q Consensus       239 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~  315 (499)
                      .+++..  ++.+++.|+.++     .+.+||+.+..-...  +....      .....+....+. .+++.|+.++    
T Consensus       266 ~~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~--~~~~~------~~v~~~~~s~~~~~~l~s~~~d~----  328 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLSQ--FPARG------NWCFKTKFAPEAPDLFACASFDN----  328 (416)
T ss_dssp             EEEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEEE--EECSS------SCCCCEEECTTCTTEEEECCSSS----
T ss_pred             eEEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCcccee--ecCCC------CceEEEEECCCCCCEEEEEecCC----
Confidence            223332  456777776432     478889877653321  11110      011112222222 4666777665    


Q ss_pred             eEEEEECCCC
Q 010847          316 EVFVMRLKPR  325 (499)
Q Consensus       316 ~~~~~~~~~~  325 (499)
                      .+.+|++...
T Consensus       329 ~i~iw~~~~~  338 (416)
T 2pm9_A          329 KIEVQTLQNL  338 (416)
T ss_dssp             EEEEEESCCC
T ss_pred             cEEEEEccCC
Confidence            6788888654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.56  E-value=3.1  Score=39.08  Aligned_cols=153  Identities=10%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+++.||.+     ..+.+||..++.|........               ........+.+  ++.+++.|+.+.     
T Consensus        29 ~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~---------------~h~~~v~~~~~sp~g~~l~s~s~D~-----   83 (345)
T 3fm0_A           29 TLLASCGGD-----RRIRIWGTEGDSWICKSVLSE---------------GHQRTVRKVAWSPCGNYLASASFDA-----   83 (345)
T ss_dssp             SCEEEEETT-----SCEEEEEEETTEEEEEEEECS---------------SCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred             CEEEEEcCC-----CeEEEEEcCCCcceeeeeecc---------------ccCCcEEEEEECCCCCEEEEEECCC-----
Confidence            566677643     247888998888865433211               01112223333  456667776543     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCCCCC
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPR  185 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p~~r  185 (499)
                       .+.++|..+..+..+.+   +........++.+  ++.+++.|+.+      ..+.++|+.+.. +..+.....   ..
T Consensus        84 -~v~iw~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~---h~  150 (345)
T 3fm0_A           84 -TTCIWKKNQDDFECVTT---LEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNS---HT  150 (345)
T ss_dssp             -CEEEEEECCC-EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECC---CC
T ss_pred             -cEEEEEccCCCeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecC---cC
Confidence             37778877777665542   1111111222333  45677777654      358888886643 333332111   11


Q ss_pred             ccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEec
Q 010847          186 YDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       186 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  226 (499)
                      .....+.+ .++.+++.|+.+     ..+.+||..+..|..+
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d-----~~i~~w~~~~~~~~~~  187 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYD-----DTVKLYREEEDDWVCC  187 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCC-----CcEEEEEecCCCEEEE
Confidence            11222333 345467777654     3588888888877643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.55  E-value=5.3  Score=41.71  Aligned_cols=123  Identities=14%  Similarity=0.059  Sum_probs=68.4

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCCC--CC---CCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---ARGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +.++.++.||+...       ...++.+|..|++  |+.-......  +.   .....+.++.+++||+...       .
T Consensus        61 ~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d  126 (668)
T 1kv9_A           61 TPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------D  126 (668)
T ss_dssp             CCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------T
T ss_pred             CCEEECCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------C
Confidence            34567999999865       2359999988874  8764311000  00   0112234556888887532       2


Q ss_pred             CcEEEEECCCCe--eEEeeecCCCCC-CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847          160 NDVHFLDLETMT--WDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       160 ~~v~~yd~~t~~--W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ..++.+|..|++  |+.-..  ..+. .....+.++. ++.+|+..+.........++.||+.+++  |+.-
T Consensus       127 g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeeccC--CCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            469999998874  876432  1111 1111222334 5655553222111234579999998876  8763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.54  E-value=2.6  Score=38.14  Aligned_cols=224  Identities=8%  Similarity=-0.039  Sum_probs=113.4

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+....     ...+.+||+. +..........                ...-++++.. ++.||+....      ..
T Consensus        32 ~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~----------------~~~~~~i~~~~~g~l~v~~~~------~~   83 (300)
T 2qc5_A           32 KVWFTQHK-----ANKISSLDQS-GRIKEFEVPTP----------------DAKVMCLIVSSLGDIWFTENG------AN   83 (300)
T ss_dssp             CEEEEETT-----TTEEEEECTT-SCEEEEECSST----------------TCCEEEEEECTTSCEEEEETT------TT
T ss_pred             CEEEEcCC-----CCeEEEECCC-CceEEEECCCC----------------CCcceeEEECCCCCEEEEecC------CC
Confidence            67775431     2358899988 77776543210                1122333333 4678876432      23


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      .+.+||+. +.+......   .....-+.++.. ++.||+....      .+.++.||+. .+........   ....-+
T Consensus        84 ~v~~~d~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~  149 (300)
T 2qc5_A           84 KIGKLSKK-GGFTEYPLP---QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPA  149 (300)
T ss_dssp             EEEEECTT-SCEEEEECS---STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEE
T ss_pred             eEEEECCC-CCeEEecCC---CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCce
Confidence            49999988 777655421   111222333333 5678876432      2468899987 6665443211   111223


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc-EEEEE-CCEEEEEeCCCCCCCcceEEEE
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGITI-DENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      .++...++.+|+....     .+.+++||+ ++....+..    +...... +++.. ++.+|+....     .+.+++|
T Consensus       150 ~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~  214 (300)
T 2qc5_A          150 FITLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM-----GNKIGRI  214 (300)
T ss_dssp             EEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----TTEEEEE
T ss_pred             eEEECCCCCEEEEecC-----CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----CCEEEEE
Confidence            3333345557775422     246899998 666655421    1111122 23332 4577776431     2358899


Q ss_pred             ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       267 d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      |+ +..+........       ......+..+.+..|++....    .+.+.+|+++
T Consensus       215 ~~-~g~~~~~~~~~~-------~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~~  259 (300)
T 2qc5_A          215 TT-TGEISEYDIPTP-------NARPHAITAGKNSEIWFTEWG----ANQIGRITND  259 (300)
T ss_dssp             CT-TCCEEEEECSST-------TCCEEEEEECSTTCEEEEETT----TTEEEEECTT
T ss_pred             cC-CCcEEEEECCCC-------CCCceEEEECCCCCEEEeccC----CCeEEEECCC
Confidence            98 555555432110       111223344433346665422    2367788873

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.46  E-value=2.6  Score=37.69  Aligned_cols=226  Identities=11%  Similarity=0.008  Sum_probs=106.9

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+.+...    ...+.+||+.+..........                 ...-++++.. ++.||+... .      .
T Consensus        36 ~l~v~~~~~----~~~i~~~~~~~~~~~~~~~~~-----------------~~~p~~i~~~~~g~l~v~~~-~------~   87 (270)
T 1rwi_B           36 NVYVTSEGM----YGRVVKLATGSTGTTVLPFNG-----------------LYQPQGLAVDGAGTVYVTDF-N------N   87 (270)
T ss_dssp             CEEEEECSS----SCEEEEECC-----EECCCCS-----------------CCSCCCEEECTTCCEEEEET-T------T
T ss_pred             CEEEEccCC----CCcEEEecCCCcccceEeeCC-----------------cCCcceeEECCCCCEEEEcC-C------C
Confidence            777723211    235788888776554432211                 0112233333 467887754 1      2


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      .+++||+.+........    .....-+.++.. +++||+....      .+.+++|+..+......... .   ...-.
T Consensus        88 ~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~---~~~p~  153 (270)
T 1rwi_B           88 RVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-G---LNDPD  153 (270)
T ss_dssp             EEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-S---CCSCC
T ss_pred             EEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-c---CCCce
Confidence            49999988776544421    111111233332 4678876432      34688887766544332211 1   11112


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEE
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      .++...++.+|+....     .+.+++||+.+..-..... ...   ..-.+++.. ++.+|+....+     +.+.+||
T Consensus       154 ~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~  219 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPF-TDI---TAPWGIAVDEAGTVYVTEHNT-----NQVVKLL  219 (270)
T ss_dssp             CEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCC-SSC---CSEEEEEECTTCCEEEEETTT-----SCEEEEC
T ss_pred             eEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecc-cCC---CCceEEEECCCCCEEEEECCC-----CcEEEEc
Confidence            3444445567776532     2468999987765433211 111   111233333 34788775422     3588899


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +....-..+....       . .....+.++.+..||+....+    +.+.+|++..
T Consensus       220 ~~~~~~~~~~~~~-------~-~~p~~i~~~~~g~l~v~~~~~----~~v~~~~~~~  264 (270)
T 1rwi_B          220 AGSTTSTVLPFTG-------L-NTPLAVAVDSDRTVYVADRGN----DRVVKLTSLE  264 (270)
T ss_dssp             TTCSCCEECCCCS-------C-SCEEEEEECTTCCEEEEEGGG----TEEEEECCCG
T ss_pred             CCCCcceeeccCC-------C-CCceeEEECCCCCEEEEECCC----CEEEEEcCCC
Confidence            8765433321100       0 112233343333466655433    3677777654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.46  E-value=2.3  Score=40.69  Aligned_cols=156  Identities=9%  Similarity=0.041  Sum_probs=71.9

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++.+++.|+.++      .+.+||+.+.  ....+........  .-.++...  ++.+++.|+.+      ..+.+||+
T Consensus        78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~  143 (416)
T 2pm9_A           78 NNKIIAGALDNG------SLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNN------GEIFIWDM  143 (416)
T ss_dssp             SSSCEEEEESSS------CEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSS------SCEEBCBT
T ss_pred             CCCeEEEEccCC------eEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCC------CeEEEEEC
Confidence            455666666432      3888888771  1112221101111  11222222  25677777754      35888888


Q ss_pred             CCCe------eEEeeecCCCCCCCccceEEEE-cC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCC---cC
Q 010847          168 ETMT------WDAVEVTQTPPAPRYDHSAALH-AN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT---GR  236 (499)
Q Consensus       168 ~t~~------W~~~~~~~~~p~~r~~~~~~~~-~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~---~r  236 (499)
                      .+..      -. ... ............+.+ .+ +.+++.|+.+     ..+.+||+.+......-. ...+.   ..
T Consensus       144 ~~~~~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~-~~~~~~~~~~  215 (416)
T 2pm9_A          144 NKCTESPSNYTP-LTP-GQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLS-YTSPNSGIKQ  215 (416)
T ss_dssp             TTTSSCTTTCCC-BCC-CCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEEC-CCCCSSCCCC
T ss_pred             CCCccccccccc-ccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEe-ccccccccCC
Confidence            7764      11 110 001111112222333 33 4577777654     359999998876443211 11000   11


Q ss_pred             cccEEEEEC--CEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          237 AGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       237 ~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      .-.+++...  ..+++.|+.+..  ...+.+||+.+.
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~  250 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNA  250 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTST
T ss_pred             ceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCC
Confidence            122233332  247777764431  114677887764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.44  E-value=4.6  Score=40.94  Aligned_cols=233  Identities=15%  Similarity=0.089  Sum_probs=109.2

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+|+.+..     .+.+.++|..+++-...-...                  ..-|+++..  +..||+.+. .      
T Consensus       150 ~~~vs~~~-----d~~V~v~D~~t~~~~~~i~~g------------------~~~~~v~~spdg~~l~v~~~-d------  199 (543)
T 1nir_A          150 LFSVTLRD-----AGQIALVDGDSKKIVKVIDTG------------------YAVHISRMSASGRYLLVIGR-D------  199 (543)
T ss_dssp             EEEEEEGG-----GTEEEEEETTTCCEEEEEECS------------------TTEEEEEECTTSCEEEEEET-T------
T ss_pred             EEEEEEcC-----CCeEEEEECCCceEEEEEecC------------------cccceEEECCCCCEEEEECC-C------
Confidence            77777653     246888999988754332221                  113444333  456666553 1      


Q ss_pred             ceEEEEEC--CCCcEEEeecCCCCCCCCcceEEEEE-----CC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCC
Q 010847          109 MIVRFIDL--ETNLCGVMETSGKVPVARGGHSVTLV-----GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  180 (499)
Q Consensus       109 ~~~~~yd~--~t~~W~~~~~~g~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~  180 (499)
                      +.+.+||+  .+.+-...-     +....-..++..     ++ .||+ ++..     .+.+.++|..+.+-...-....
T Consensus       200 ~~V~v~D~~~~t~~~~~~i-----~~g~~p~~va~sp~~~~dg~~l~v-~~~~-----~~~v~v~D~~t~~~~~~i~~~g  268 (543)
T 1nir_A          200 ARIDMIDLWAKEPTKVAEI-----KIGIEARSVESSKFKGYEDRYTIA-GAYW-----PPQFAIMDGETLEPKQIVSTRG  268 (543)
T ss_dssp             SEEEEEETTSSSCEEEEEE-----ECCSEEEEEEECCSTTCTTTEEEE-EEEE-----SSEEEEEETTTCCEEEEEECCE
T ss_pred             CeEEEEECcCCCCcEEEEE-----ecCCCcceEEeCCCcCCCCCEEEE-EEcc-----CCeEEEEeccccccceeecccC
Confidence            45999999  666532221     111222233332     44 4554 3332     3468899988876433322111


Q ss_pred             C--------CCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE-EEE
Q 010847          181 P--------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-WYI  250 (499)
Q Consensus       181 ~--------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l~v  250 (499)
                      +        |.++-........+..+|+....     .+.|+++|..+..-..+..   .+..+.-|.++.. +++ +|+
T Consensus       269 ~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~v  340 (543)
T 1nir_A          269 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMT  340 (543)
T ss_dssp             ECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEE
T ss_pred             cccCccccccCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEE
Confidence            0        11222222222224545544322     3579999987653211111   1112333333333 344 444


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      .+..     .+.+.++|+.+++-....... ..|-+  +.... +...+...+++.+...   ...+-++|+..
T Consensus       341 a~~~-----~~~v~v~D~~tg~l~~~i~~g-~~ph~--g~g~~-~~~p~~g~~~~s~~~~---d~~V~v~d~~~  402 (543)
T 1nir_A          341 AANN-----SNKVAVIDSKDRRLSALVDVG-KTPHP--GRGAN-FVHPKYGPVWSTSHLG---DGSISLIGTDP  402 (543)
T ss_dssp             EEGG-----GTEEEEEETTTTEEEEEEECS-SSBCC--TTCEE-EEETTTEEEEEEEBSS---SSEEEEEECCT
T ss_pred             EecC-----CCeEEEEECCCCeEEEeeccC-CCCCC--CCCcc-cCCCCCccEEEeccCC---CceEEEEEeCC
Confidence            4321     236788999988654432211 11111  11122 2222324566665422   12577777755

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=94.44  E-value=0.43  Score=35.98  Aligned_cols=32  Identities=3%  Similarity=0.130  Sum_probs=16.9

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      ...|...+...++.+.+...++.+++++..+.
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~   57 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQH   57 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555544443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.44  E-value=4.7  Score=41.32  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .||+....      +.++.||..+++  |+.-......          ..+.......+.++.++.||+...       .
T Consensus        70 ~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~----------~~~~~~~~~~g~a~~~~~v~~~t~-------d  126 (582)
T 1flg_A           70 VIYVTASY------SRLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL-------D  126 (582)
T ss_dssp             EEEEEETT------TEEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET-------T
T ss_pred             EEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcc----------cccccccCCCccEEECCEEEEEeC-------C
Confidence            67766542      249999998875  8875432210          000000011234567899887532       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCCCC-CcceEEEEECC------EEEEEcCcCCCCCccCcEEEEECCCCe--eEEe
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVPVA-RGGHSVTLVGS------RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  175 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~------~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~  175 (499)
                      ..++.+|..|++  |+....  ..... ....+-++.++      .|| +|...........++.||+.|++  |+..
T Consensus       127 g~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          127 ASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             TEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeecC
Confidence            349999998885  875431  11100 01112233445      454 44432111124579999998764  8653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.43  E-value=5.6  Score=41.51  Aligned_cols=149  Identities=10%  Similarity=0.050  Sum_probs=72.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC--C--EEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~--~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++..++.|+.+.      .+.++|.....-..+..  .....+....++.+.  +  .+++.|+.+      ..+.++|+
T Consensus       483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~  548 (694)
T 3dm0_A          483 DNRQIVSASRDR------TIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNL  548 (694)
T ss_dssp             TSSCEEEEETTS------CEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEET
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEEC
Confidence            455566666433      37888876543222221  111112222333332  2  355666543      35889998


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECC
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  246 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  246 (499)
                      .+.+-...-. +    ......++.+ .++.+++.|+.+     ..|.++|+.+..-...     ......-++++...+
T Consensus       549 ~~~~~~~~~~-~----h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          549 SNCKLRSTLA-G----HTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKKLYS-----LEANSVIHALCFSPN  613 (694)
T ss_dssp             TTCCEEEEEC-C----CSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTEEEEC-----CBCSSCEEEEEECSS
T ss_pred             CCCcEEEEEc-C----CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEE-----ecCCCcEEEEEEcCC
Confidence            8765432211 1    1112222333 355577777754     3588899887653221     111122234444444


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      ..+++++.+     ..+.+||+.+..-.
T Consensus       614 ~~~l~~~~~-----~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          614 RYWLCAATE-----HGIKIWDLESKSIV  636 (694)
T ss_dssp             SSEEEEEET-----TEEEEEETTTTEEE
T ss_pred             CcEEEEEcC-----CCEEEEECCCCCCh
Confidence            444444432     24788888876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.40  E-value=2.9  Score=38.04  Aligned_cols=151  Identities=7%  Similarity=0.051  Sum_probs=72.4

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ++..++.|+.+      ..+.+||.... -..+.    .+....-.+++...++. ++.|+.+     ..+.+||+.+..
T Consensus       154 ~~~~l~~~~~d------~~i~i~d~~~~-~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~  216 (313)
T 3odt_A          154 SENKFLTASAD------KTIKLWQNDKV-IKTFS----GIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD  216 (313)
T ss_dssp             TTTEEEEEETT------SCEEEEETTEE-EEEEC----SSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred             CCCEEEEEECC------CCEEEEecCce-EEEEe----ccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence            55666666643      35888883221 11111    11122223334445665 6666543     368999987765


Q ss_pred             eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010847          223 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  302 (499)
Q Consensus       223 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~  302 (499)
                      -...-. +   ....-.+++...+..++.|+.+     ..+.+||+.+......-..+.        .....+....+..
T Consensus       217 ~~~~~~-~---~~~~i~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~--------~~i~~~~~~~~~~  279 (313)
T 3odt_A          217 VLRTYE-G---HESFVYCIKLLPNGDIVSCGED-----RTVRIWSKENGSLKQVITLPA--------ISIWSVDCMSNGD  279 (313)
T ss_dssp             EEEEEE-C---CSSCEEEEEECTTSCEEEEETT-----SEEEEECTTTCCEEEEEECSS--------SCEEEEEECTTSC
T ss_pred             hhhhhh-c---CCceEEEEEEecCCCEEEEecC-----CEEEEEECCCCceeEEEeccC--------ceEEEEEEccCCC
Confidence            322110 1   1111122333333345555533     258899988876543322111        1222333333323


Q ss_pred             EEEEcCCCCCCCceEEEEECCCCCCCCCcc
Q 010847          303 LVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  332 (499)
Q Consensus       303 l~v~GG~~~~~~~~~~~~~~~~~~W~~~~~  332 (499)
                      ++ .|+.++    .+.+||+....+.....
T Consensus       280 ~~-~~~~dg----~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          280 II-VGSSDN----LVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EE-EEETTS----CEEEEESCGGGCCC---
T ss_pred             EE-EEeCCC----cEEEEeCCCCceeehhh
Confidence            44 466654    78899998776654433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=94.38  E-value=2.9  Score=43.89  Aligned_cols=150  Identities=10%  Similarity=-0.019  Sum_probs=77.2

Q ss_pred             CceEEEEECCCCcEE--EeecCCCCCC-CCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCC
Q 010847          108 SMIVRFIDLETNLCG--VMETSGKVPV-ARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  183 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~--~~~~~g~~p~-~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~  183 (499)
                      ...++++++.++.-.  .+.   ..+. +....+... -+++.++++.....  ..++++.+|..+..|..+....    
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~----  271 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV----  271 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS----
T ss_pred             CCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC----
Confidence            345999999887632  232   1221 122222222 23443333332221  2567898888778888886421    


Q ss_pred             CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc---eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCc
Q 010847          184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC  260 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~  260 (499)
                      . .....+...++ +|+....+  .....|+.+|+.+..   |..+..  ..+. ..-...+..++.+++....+   ..
T Consensus       272 ~-~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~l~~~~~~~~~lv~~~~~d---g~  341 (695)
T 2bkl_A          272 G-AKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVP--EDSS-ASLLSVSIVGGHLSLEYLKD---AT  341 (695)
T ss_dssp             S-CCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEEC--CCSS-CEEEEEEEETTEEEEEEEET---TE
T ss_pred             C-ceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEec--CCCC-CeEEEEEEECCEEEEEEEEC---CE
Confidence            1 11222223455 66654432  224579999987765   777632  1111 11122333477777775432   24


Q ss_pred             ceEEEEECCCCceEEe
Q 010847          261 QETIVLNMTKLAWSIL  276 (499)
Q Consensus       261 ~~~~~~d~~~~~W~~l  276 (499)
                      ..++.+++....-..+
T Consensus       342 ~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTV  357 (695)
T ss_dssp             EEEEEEETTCCEEEEC
T ss_pred             EEEEEEeCCCCeeEEe
Confidence            5789999765544444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.24  E-value=1.3  Score=35.35  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHH
Q 010847          386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIEN  461 (499)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~  461 (499)
                      +.+....+...+.+.......|......+..+..++..+++..+..+....+++..+..+-.+++.++..+.    ..+.
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee   97 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE   97 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444333333344444444444444444334444444444444444444444445555544444    2333


Q ss_pred             HHHHHHHhHHHHHHHHHHh
Q 010847          462 EVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       462 e~~~~~~~~~~~~~~~~~~  480 (499)
                      ....+...+..++.+.+++
T Consensus        98 ~~~~L~~~kkkle~e~~~L  116 (129)
T 2fxo_A           98 MNAELTAKKRKLEDECSEL  116 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=94.22  E-value=3.3  Score=38.08  Aligned_cols=143  Identities=17%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCc-cceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM-SDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLC  121 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r-~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  121 (499)
                      +.+.++|+.+++-...-..+.                .. ..+.++..  ++.+|+.+..      ...++++|+.+++-
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~   68 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIAD----------------AGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGET   68 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTT----------------CTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcEEEEEEcCC----------------CCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCe
Confidence            468999999886654333211                00 01222222  3477777643      23599999998875


Q ss_pred             EEeecCCCCCC--CCcceEEEEE-C-CEEEEEcCc---CCCCC--ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEE
Q 010847          122 GVMETSGKVPV--ARGGHSVTLV-G-SRLIIFGGE---DRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL  192 (499)
Q Consensus       122 ~~~~~~g~~p~--~r~~~~~~~~-~-~~lyv~GG~---~~~~~--~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~  192 (499)
                      ......+. +.  ...-+.++.. + +.||+....   .....  ..+.+++||+.+.+....-..+..     -+.++.
T Consensus        69 ~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~  142 (337)
T 1pby_B           69 LGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAW  142 (337)
T ss_dssp             EEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEE
T ss_pred             EeeEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEE
Confidence            43221111 00  0011222322 3 367776311   00100  136799999988776543322211     122333


Q ss_pred             EcC-cEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          193 HAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       193 ~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      ..+ ++||+.+        +.+++||+.+.+-
T Consensus       143 s~dg~~l~~~~--------~~i~~~d~~~~~~  166 (337)
T 1pby_B          143 ARDGSKLYGLG--------RDLHVMDPEAGTL  166 (337)
T ss_dssp             CTTSSCEEEES--------SSEEEEETTTTEE
T ss_pred             CCCCCEEEEeC--------CeEEEEECCCCcE
Confidence            333 3355542        3577777776653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.19  E-value=2.9  Score=38.11  Aligned_cols=215  Identities=10%  Similarity=-0.003  Sum_probs=104.4

Q ss_pred             ccccCCCCCeEEcccCCCCCCc----ccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCC
Q 010847            6 WHLELPYDLWVTLPVSGARPSP----RYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP   81 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~~~~~p~~----r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~   81 (499)
                      +.+|+..+ ...+..+...|..    ..+.||+....     ...+.+||+.+++...+.....            ..+.
T Consensus        53 ~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~------------~~~~  114 (296)
T 3e5z_A           53 WAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFE------------GKKL  114 (296)
T ss_dssp             EEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEET------------TEEC
T ss_pred             EEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccC------------CCCC
Confidence            45667666 5555433222211    12266655321     2358999999998876643210            0011


Q ss_pred             CccceeEEEECCEEEEE----cccCC-------CCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEE
Q 010847           82 PMSDHCMVKWGTKLLIL----GGHYK-------KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIF  149 (499)
Q Consensus        82 ~r~~~s~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~  149 (499)
                      .+....++.-++.||+.    |....       .......++.||+. +....+..  ....+   ..++. -++++++.
T Consensus       115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~~lv~  188 (296)
T 3e5z_A          115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGNLLVS  188 (296)
T ss_dssp             CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSCEEEE
T ss_pred             CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCCEEEE
Confidence            11222222225778886    43210       00113469999987 66555531  11111   22222 24555544


Q ss_pred             cCcCCCCCccCcEEEEECC-CCee-EEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecc
Q 010847          150 GGEDRSRKLLNDVHFLDLE-TMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       150 GG~~~~~~~~~~v~~yd~~-t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                      ...      .+.+++||+. +++. ...... ... ...-..++...++.||+..+       +.|.+||+.......+.
T Consensus       189 ~~~------~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~  253 (296)
T 3e5z_A          189 DTG------DNATHRYCLNARGETEYQGVHF-TVE-PGKTDGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVL  253 (296)
T ss_dssp             ETT------TTEEEEEEECSSSCEEEEEEEE-CCS-SSCCCSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEE
T ss_pred             eCC------CCeEEEEEECCCCcCcCCCeEe-eCC-CCCCCeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEE
Confidence            332      3468999986 5555 222221 111 11112344445666887651       46999998755544442


Q ss_pred             cCCCCCCcCcccEEEEE--C-CEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          228 IKGDLVTGRAGHAGITI--D-ENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       228 ~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      .    +..  -.+++.-  + +.|||...       ..++.|++.+..
T Consensus       254 ~----~~~--~~~~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~  288 (296)
T 3e5z_A          254 T----PQT--TSNLCFGGPEGRTLYMTVS-------TEFWSIETNVRG  288 (296)
T ss_dssp             C----SSC--CCEEEEESTTSCEEEEEET-------TEEEEEECSCCB
T ss_pred             C----CCC--ceeEEEECCCCCEEEEEcC-------CeEEEEEccccc
Confidence            2    111  1122221  2 25666542       258899887764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.18  E-value=0.28  Score=39.59  Aligned_cols=48  Identities=17%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      .+++.+.+.++.++++..+++..++.++...+.+.+.++.++.+++++
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~  118 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE  118 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555555555555555555555555444444443333

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.18  E-value=3.3  Score=37.86  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC----CEEEEEcCcCCCCCccCcEEEEECC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      +.+++.|+.+      ..+.++|+.++.|..+...   ........++.+.    +.+++.|+.+      ..+.+||+.
T Consensus        67 g~~l~s~s~D------~~v~iWd~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~  131 (297)
T 2pm7_B           67 GTILASCSYD------GKVMIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFK  131 (297)
T ss_dssp             CSEEEEEETT------TEEEEEEBSSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBC
T ss_pred             CCEEEEEcCC------CEEEEEEcCCCceEEEEEe---ecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEec
Confidence            5567777653      3488889888776554321   1111112223331    4566666643      357777776


Q ss_pred             CC
Q 010847          169 TM  170 (499)
Q Consensus       169 t~  170 (499)
                      +.
T Consensus       132 ~~  133 (297)
T 2pm7_B          132 EN  133 (297)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.17  E-value=0.6  Score=46.85  Aligned_cols=31  Identities=10%  Similarity=0.284  Sum_probs=12.9

Q ss_pred             HHHHHHHHhhhHHHHHhhhhhHHHHHHhhcc
Q 010847          387 KEDKRVLELSLTEVRTENSRFREKIDEVNST  417 (499)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (499)
                      ++.+.++++.+.+.+....+++..+++...+
T Consensus       366 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~  396 (487)
T 3oja_A          366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQ  396 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHhhch
Confidence            3333344444444444444444444444333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=94.14  E-value=2.8  Score=44.01  Aligned_cols=227  Identities=11%  Similarity=0.009  Sum_probs=107.9

Q ss_pred             CCCcccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEccc
Q 010847           24 RPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGH  101 (499)
Q Consensus        24 ~p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~  101 (499)
                      .|.++...+|.+-- ..+.....+|+.+...+.|+.+-.....          .  .........+.+  +++.+++.-.
T Consensus        74 ~p~~dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~d~~~~----------a--~~~~~~~~~~~~SPDG~~la~~~~  140 (695)
T 2bkl_A           74 TPSRRNGRFFYVRT-HKDKEKAILYWRQGESGQEKVLLDPNGW----------S--KDGTVSLGTWAVSWDGKKVAFAQK  140 (695)
T ss_dssp             CCEEETTEEEEEEE-CTTCSSCEEEEEESTTSCCEEEECGGGS----------S--SSSCEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEEECCEEEEEEE-cCCCeEEEEEEEcCCCCCcEEEEchHHh----------c--cCCCEEEEEEEECCCCCEEEEEEC
Confidence            34444445554432 2223356788888888888877543211          0  000111122222  4454444332


Q ss_pred             CCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCC-------CccCcEEEEECCCCee-
Q 010847          102 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR-------KLLNDVHFLDLETMTW-  172 (499)
Q Consensus       102 ~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~-------~~~~~v~~yd~~t~~W-  172 (499)
                      .... ....++++|+.++.... .  ...+.... ..++. -+++.++++..+...       .....++.+++.+..- 
T Consensus       141 ~~G~-~~~~i~v~dl~tg~~~~-~--~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~  215 (695)
T 2bkl_A          141 PNAA-DEAVLHVIDVDSGEWSK-V--DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK  215 (695)
T ss_dssp             ETTC-SCCEEEEEETTTCCBCS-S--CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG
T ss_pred             CCCC-ceEEEEEEECCCCCCcC-C--cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh
Confidence            2221 13469999999987531 1  11221111 22222 245555554443220       1345699999987753 


Q ss_pred             -EEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEE
Q 010847          173 -DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV  251 (499)
Q Consensus       173 -~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~  251 (499)
                       ..+..  ....+........-.++..++++..... ..+++|.+|..+..|..+....    . .....+..++.+|+.
T Consensus       216 ~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~----~-~~~~~~~~~g~l~~~  287 (695)
T 2bkl_A          216 DTVVHE--RTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGV----G-AKYEVHAWKDRFYVL  287 (695)
T ss_dssp             CEEEEC--CCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECS----S-CCEEEEEETTEEEEE
T ss_pred             ceEEEe--cCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCC----C-ceEEEEecCCcEEEE
Confidence             22221  1111122223333334434444432211 3467898887777787764211    1 111222245565554


Q ss_pred             eCCCCCCCcceEEEEECCCCc---eEEecc
Q 010847          252 GGGDNNNGCQETIVLNMTKLA---WSILTS  278 (499)
Q Consensus       252 GG~~~~~~~~~~~~~d~~~~~---W~~l~~  278 (499)
                      ...  ......++++|+.+..   |..+..
T Consensus       288 s~~--~~~~~~l~~~d~~~~~~~~~~~l~~  315 (695)
T 2bkl_A          288 TDE--GAPRQRVFEVDPAKPARASWKEIVP  315 (695)
T ss_dssp             ECT--TCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred             ECC--CCCCCEEEEEeCCCCCccCCeEEec
Confidence            332  2223578999987754   877643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.03  E-value=1.8  Score=39.80  Aligned_cols=152  Identities=9%  Similarity=-0.053  Sum_probs=73.5

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC-----CCCCceEEEEECCCC
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETN  119 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~-----~~~~~~~~~yd~~t~  119 (499)
                      +.+..||+.+++++.+.....            ..+..+....++.-++.||+..-....     ......++++|+. +
T Consensus        73 ~~l~~~d~~~g~~~~~~~~~~------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g  139 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVLATVDN------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H  139 (297)
T ss_dssp             TEEEEEETTTTEEEEEEECCT------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S
T ss_pred             CeEEEEECCCCcEEEEEecCC------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C
Confidence            468999999999887765421            111122222222225677764211110     0123468999875 3


Q ss_pred             cEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEEC--CCCeeEEeeecCCCCCC-CccceEEEEc
Q 010847          120 LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAP-RYDHSAALHA  194 (499)
Q Consensus       120 ~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~p~~-r~~~~~~~~~  194 (499)
                      ....+..  ....   ...++..  ++.||+....      .+.++.||.  .+............+.. ..-..++...
T Consensus       140 ~~~~~~~--~~~~---pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~  208 (297)
T 3g4e_A          140 HVKKYFD--QVDI---SNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA  208 (297)
T ss_dssp             CEEEEEE--EESB---EEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred             CEEEEee--cccc---ccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence            3333321  1111   1223322  3467776432      456888886  45544322111111111 1112334444


Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCceEe
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  225 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  225 (499)
                      ++.||+....+     +.|++||+.+++...
T Consensus       209 ~G~lwva~~~~-----~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          209 EGKLWVACYNG-----GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             TSCEEEEEETT-----TEEEEECTTTCCEEE
T ss_pred             CCCEEEEEcCC-----CEEEEEcCCCceEEE
Confidence            66677764221     359999998776443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.02  E-value=3.9  Score=38.10  Aligned_cols=194  Identities=14%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++..++.|+.+.      .+.++|+..  ..+..+..   +.........+.+  ++.+++.|+.+.      .+.++|.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence            456666676533      388888743  33444432   1111111222333  456677776543      4788888


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEc-C--cEEEEEcCCCCCCCCCcEEEEECCCC------ceEecccCCCCCCcCcc
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN------EWSQPEIKGDLVTGRAG  238 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~------~W~~~~~~~~~p~~r~~  238 (499)
                      .+..|..+.....   ....-..+.+. +  ...++.|+.++     .+.++|+.+.      .|..+.... ......-
T Consensus       183 ~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v  253 (330)
T 2hes_X          183 YDDDWECVAVLNG---HEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQV  253 (330)
T ss_dssp             ETTEEEEEEEECC---CSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCE
T ss_pred             CCCCeeEEEEccC---CCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecc-cccccce
Confidence            7777766654211   11111222332 2  34566666542     4666665332      344432111 0011122


Q ss_pred             cEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCC-ceEEEEEcC--ceEEEEEcCCCCCCCc
Q 010847          239 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL-SVCSAIIEG--EHHLVAFGGYNGKYNN  315 (499)
Q Consensus       239 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~-~~~~~~~~~--~~~l~v~GG~~~~~~~  315 (499)
                      .+++...+.+++.||.++     .+.+||..+..|..+......     +.. ....+....  +..+++.||.++    
T Consensus       254 ~~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~-----h~~~~v~~v~~~~~~~~~~las~s~Dg----  319 (330)
T 2hes_X          254 YNVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRALC-----HGVYEINVVKWLELNGKTILATGGDDG----  319 (330)
T ss_dssp             EEEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESCT-----TTTSCEEEEEEC-----CCEEEEETTS----
T ss_pred             EEEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEeccccc-----cccceEEEEEEecCCCceEEEEecCCC----
Confidence            233333455666666433     367788878878654332110     111 222222221  234566677765    


Q ss_pred             eEEEEECC
Q 010847          316 EVFVMRLK  323 (499)
Q Consensus       316 ~~~~~~~~  323 (499)
                      .+.++++.
T Consensus       320 ~v~~W~~~  327 (330)
T 2hes_X          320 IVNFWSLE  327 (330)
T ss_dssp             EEEEEEC-
T ss_pred             cEEEEEec
Confidence            56667654

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=94.01  E-value=1.4  Score=33.03  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             hHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh
Q 010847          397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC  439 (499)
Q Consensus       397 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (499)
                      +.....+...+.+++..++.+......++...+.+...+...+
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE   55 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE   55 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence            3334445555666666666666666666555555555444333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.97  E-value=3.8  Score=43.51  Aligned_cols=187  Identities=13%  Similarity=0.022  Sum_probs=90.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      ..+++|+.+     ..+.+||..++.....-...                  ......+.+  ++..++.|+.+      
T Consensus        68 ~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~d------  118 (814)
T 3mkq_A           68 NWIIVGSDD-----FRIRVFNYNTGEKVVDFEAH------------------PDYIRSIAVHPTKPYVLSGSDD------  118 (814)
T ss_dssp             TEEEEEETT-----SEEEEEETTTCCEEEEEECC------------------SSCEEEEEECSSSSEEEEEETT------
T ss_pred             CEEEEEeCC-----CeEEEEECCCCcEEEEEecC------------------CCCEEEEEEeCCCCEEEEEcCC------
Confidence            556666642     35889999988764432211                  111222222  34455555532      


Q ss_pred             ceEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847          109 MIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  185 (499)
Q Consensus       109 ~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r  185 (499)
                      ..+.+||..++ .......  ....  .-.+++..  ++.+++.|+.+      ..+.+||+.+..-...... .  ...
T Consensus       119 g~i~vw~~~~~~~~~~~~~--~~~~--~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~-~--~~~  185 (814)
T 3mkq_A          119 LTVKLWNWENNWALEQTFE--GHEH--FVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTT-G--QER  185 (814)
T ss_dssp             SEEEEEEGGGTSEEEEEEE--CCSS--CEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEEC-C--CTT
T ss_pred             CEEEEEECCCCceEEEEEc--CCCC--cEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEec-C--CCC
Confidence            34888998776 3222211  1111  11222333  34677777653      3588999866543222211 1  111


Q ss_pred             ccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcce
Q 010847          186 YDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       186 ~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~  262 (499)
                      ....++...  ++.+++.|+.+     ..+.+||+.+..-...-. +  . ...-.+++.. ++.+++.|+.++     .
T Consensus       186 ~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~-~--~-~~~v~~~~~~~~~~~l~~~~~dg-----~  251 (814)
T 3mkq_A          186 GVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLE-G--H-MSNVSFAVFHPTLPIIISGSEDG-----T  251 (814)
T ss_dssp             CCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEEE-C--C-SSCEEEEEECSSSSEEEEEETTS-----C
T ss_pred             CEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEEc-C--C-CCCEEEEEEcCCCCEEEEEeCCC-----e
Confidence            122222222  44466776654     368999987765332110 1  0 0111122222 345667766433     4


Q ss_pred             EEEEECCCCce
Q 010847          263 TIVLNMTKLAW  273 (499)
Q Consensus       263 ~~~~d~~~~~W  273 (499)
                      +.+||+.+..-
T Consensus       252 v~vwd~~~~~~  262 (814)
T 3mkq_A          252 LKIWNSSTYKV  262 (814)
T ss_dssp             EEEEETTTCSE
T ss_pred             EEEEECCCCcE
Confidence            77888876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.97  E-value=2.4  Score=39.29  Aligned_cols=108  Identities=13%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE----CCEEEEEcccCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKKSS  106 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~----~~~iyv~GG~~~~~~  106 (499)
                      .+++.|+.+     ..+.+||+.++....+..+...                ......+.+    ++.+++.|+.+.   
T Consensus        26 ~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH----------------~~~V~~v~~~~~~~~~~l~s~s~D~---   81 (316)
T 3bg1_A           26 TRLATCSSD-----RSVKIFDVRNGGQILIADLRGH----------------EGPVWQVAWAHPMYGNILASCSYDR---   81 (316)
T ss_dssp             CEEEEEETT-----TEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEECCGGGSSCEEEEETTS---
T ss_pred             CEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCC----------------CccEEEEEeCCCCCCCEEEEEECCC---
Confidence            566676643     2478888887765444333211                111222333    256677776543   


Q ss_pred             CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCcEEEEECCCC-eeEE
Q 010847          107 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETM-TWDA  174 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~  174 (499)
                         .+.++|+.++.|......   ........++.+  +  +.+++.|+.+.      .+.++|+.+. .|..
T Consensus        82 ---~v~iWd~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           82 ---KVIIWREENGTWEKSHEH---AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEV  142 (316)
T ss_dssp             ---CEEEECCSSSCCCEEEEE---CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEE
T ss_pred             ---EEEEEECCCCcceEEEEc---cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcce
Confidence               388899988877654421   111111122222  2  45677776543      4777787664 4643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.92  E-value=4.4  Score=38.38  Aligned_cols=202  Identities=12%  Similarity=0.031  Sum_probs=98.0

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++++|+.++.-..+.....               ..........-+..|++...       ...++++|+.++.-..+
T Consensus        60 ~~l~~~d~~~g~~~~lt~~~~---------------~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~~  117 (388)
T 3pe7_A           60 WNYYLLDLNTQVATQLTEGRG---------------DNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENVV  117 (388)
T ss_dssp             CEEEEEETTTCEEEECCCSSC---------------BCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCceEEeeeCCC---------------CCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCcceee
Confidence            369999999988776653221               01111122222345555442       13599999999876665


Q ss_pred             ecCCCCCCCCcceEEEEE--CCEEEE-Ec---CcC------------CCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          125 ETSGKVPVARGGHSVTLV--GSRLII-FG---GED------------RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       125 ~~~g~~p~~r~~~~~~~~--~~~lyv-~G---G~~------------~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      .   ..|...........  ++++++ +-   ...            ........++.+|+.+.+-..+....    .. 
T Consensus       118 ~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~-  189 (388)
T 3pe7_A          118 Y---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN----QW-  189 (388)
T ss_dssp             E---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES----SC-
T ss_pred             e---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC----cc-
Confidence            4   33333222222221  333322 11   000            00112367999999988766664311    11 


Q ss_pred             cceEEEEc-CcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE-EEEEeCCCCCCCcce
Q 010847          187 DHSAALHA-NRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQE  262 (499)
Q Consensus       187 ~~~~~~~~-~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~  262 (499)
                      ........ ++..+++.... .......+|.+|+.+.....+..   ..........+.. +++ |+.+.. ........
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~  265 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSY-LKGSPDRF  265 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEE-ETTCCCEE
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEec-CCCCCcce
Confidence            12223333 44444443322 11234689999998777666521   1110011111221 344 433332 21111224


Q ss_pred             EEEEECCCCceEEeccCC
Q 010847          263 TIVLNMTKLAWSILTSVK  280 (499)
Q Consensus       263 ~~~~d~~~~~W~~l~~~~  280 (499)
                      ++++|+.++.-..+...+
T Consensus       266 l~~~d~~~g~~~~l~~~~  283 (388)
T 3pe7_A          266 IYSADPETLENRQLTSMP  283 (388)
T ss_dssp             EEEECTTTCCEEEEEEEC
T ss_pred             EEEEecCCCceEEEEcCC
Confidence            999999998876665443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=93.88  E-value=7.3  Score=40.76  Aligned_cols=235  Identities=12%  Similarity=-0.001  Sum_probs=117.2

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC------CCCCceEEEEECCC
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK------SSDSMIVRFIDLET  118 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~------~~~~~~~~~yd~~t  118 (499)
                      ..++++|+.++.........                 .+....+-.-++.||+.......      ......++.+++.+
T Consensus       155 ~~i~v~dl~tg~~~~~~~~~-----------------~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt  217 (693)
T 3iuj_A          155 REIHLMDVESKQPLETPLKD-----------------VKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGT  217 (693)
T ss_dssp             EEEEEEETTTCSEEEEEEEE-----------------EESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTS
T ss_pred             EEEEEEECCCCCCCccccCC-----------------ceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCC
Confidence            47899999999876543211                 11122222333455554332210      01234688888877


Q ss_pred             CcEE--EeecCCCCCC--CCcceEEEE-ECC-EEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecCCCCCCCccceE
Q 010847          119 NLCG--VMETSGKVPV--ARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       119 ~~W~--~~~~~g~~p~--~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~  190 (499)
                      ..=.  .+.   ..+.  +....++.. -++ .|++....+.   ..++++++|+.+.  .|..+...     .......
T Consensus       218 ~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~~  286 (693)
T 3iuj_A          218 AQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQGD-----LDADVSL  286 (693)
T ss_dssp             CGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEECS-----SSSCEEE
T ss_pred             CcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeCC-----CCceEEE
Confidence            6531  222   1121  222222222 234 4544433221   2468999998765  78777531     1111222


Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCCC---ceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      ....++.+|+....+  .....|+.+|+.+.   .|+.+..  .....  . +....++.|++..-.+   ....++++|
T Consensus       287 ~~~~g~~l~~~t~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~--~-~~s~~g~~lv~~~~~~---g~~~l~~~d  356 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRD--APNRRLVTVDAANPGPAHWRDLIP--ERQQV--L-TVHSGSGYLFAEYMVD---ATARVEQFD  356 (693)
T ss_dssp             EEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEEC--CCSSC--E-EEEEETTEEEEEEEET---TEEEEEEEC
T ss_pred             EeccCCEEEEEECCC--CCCCEEEEEeCCCCCccccEEEec--CCCCE--E-EEEEECCEEEEEEEEC---CeeEEEEEE
Confidence            334466788876543  23457999998764   3777532  11111  1 4444566666554322   245789999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEE--EcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  327 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W  327 (499)
                      +.......+.. +..      +. ...+.  .+++..++.+.+..  ....+|.||+.....
T Consensus       357 ~~g~~~~~l~~-p~~------~~-~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          357 YEGKRVREVAL-PGL------GS-VSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TTSCEEEEECC-SSS------SE-EEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTCCE
T ss_pred             CCCCeeEEeec-CCC------ce-EEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCCeE
Confidence            88766555532 211      11 11111  12333444444432  235788888765543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.82  E-value=7.4  Score=40.59  Aligned_cols=121  Identities=17%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .||+...      ...++.+|..+++  |+.-......      ..  ..........+.++.+++||+...       .
T Consensus        68 ~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~v~v~~~-------d  126 (668)
T 1kv9_A           68 VIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV------KA--RTSCCDAVNRGVALWGDKVYVGTL-------D  126 (668)
T ss_dssp             EEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG------GG--GGCTTCSCCCCCEEEBTEEEEECT-------T
T ss_pred             EEEEECC------CCeEEEEECCCChhceEECCCCCcc------cc--ccccccCCccceEEECCEEEEEcC-------C
Confidence            6666543      2468999998875  8875432110      00  000000112234567888887542       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEe
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  175 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~  175 (499)
                      ..++.+|..|++  |+....  ..+ ......+.++.++.+|+..+.. .......++.||+.|++  |+.-
T Consensus       127 g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeeccC--CCCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEec
Confidence            349999998885  876541  111 1112223355688877643221 11124579999998865  8754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.81  E-value=3.7  Score=39.72  Aligned_cols=145  Identities=12%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      +.+++.|+.++      .+.+||..++.....-   ....  ..-.++.+  ++.+++.||.+.      .+.+||+.+.
T Consensus       120 ~~~l~s~s~Dg------~i~vwd~~~~~~~~~l---~~h~--~~V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~~  182 (410)
T 1vyh_C          120 FSVMVSASEDA------TIKVWDYETGDFERTL---KGHT--DSVQDISFDHSGKLLASCSADM------TIKLWDFQGF  182 (410)
T ss_dssp             SSEEEEEESSS------CEEEEETTTCCCCEEE---CCCS--SCEEEEEECTTSSEEEEEETTS------CCCEEETTSS
T ss_pred             CCEEEEEeCCC------eEEEEECCCCcEEEEE---eccC--CcEEEEEEcCCCCEEEEEeCCC------eEEEEeCCCC
Confidence            55777776533      3889998887643322   1111  11122223  456777777543      4777888765


Q ss_pred             eeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  247 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  247 (499)
                      .-  +..   +........++.+ .++..++.|+.+     ..+.+||+.++.....- .+    .......+..  ++.
T Consensus       183 ~~--~~~---~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~-~~----h~~~v~~~~~~~~g~  247 (410)
T 1vyh_C          183 EC--IRT---MHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTF-TG----HREWVRMVRPNQDGT  247 (410)
T ss_dssp             CE--EEC---CCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEE-EC----CSSCEEEEEECTTSS
T ss_pred             ce--eEE---EcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE-eC----CCccEEEEEECCCCC
Confidence            43  221   1111112223333 344466667654     36889998876543211 01    0111112222  456


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      +++.|+.++     .+.+||+.+....
T Consensus       248 ~l~s~s~D~-----~v~vwd~~~~~~~  269 (410)
T 1vyh_C          248 LIASCSNDQ-----TVRVWVVATKECK  269 (410)
T ss_dssp             EEEEEETTS-----CEEEEETTTCCEE
T ss_pred             EEEEEcCCC-----eEEEEECCCCcee
Confidence            677776443     3677787766543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.79  E-value=0.42  Score=38.56  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=22.9

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      +...|+.++++...++.++.+++.+.+.+++..++...+++.++.++++++
T Consensus        76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~  126 (138)
T 3hnw_A           76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI  126 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.74  E-value=6.5  Score=40.36  Aligned_cols=120  Identities=16%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             eEEEEcCCCCCcccCcEEEEEc-CCCc--eEEeeeCcccccCccccCCCCCCCCCc---cceeEEE--ECCE----EEEE
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDL-RSLA--WSNLRLETELDADKTEDSGLLEVLPPM---SDHCMVK--WGTK----LLIL   98 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r---~~~s~~~--~~~~----iyv~   98 (499)
                      .||+.+.+     .+.++.||. .+++  |+.-......           ..+..+   .....++  .++.    ||+.
T Consensus        64 ~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~-----------~~~~~~~~~~~~g~av~p~~g~~~~rV~v~  127 (599)
T 1w6s_A           64 KMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPA-----------ARAVACCDLVNRGLAYWPGDGKTPALILKT  127 (599)
T ss_dssp             EEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG-----------GGGGCSSCSCCCCCEEECCCSSSCCEEEEE
T ss_pred             EEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCcc-----------ccccccccccccceEEEecCCcceeEEEEE
Confidence            67766542     246999999 7775  8875432210           000011   1122344  5666    8775


Q ss_pred             cccCCCCCCCceEEEEECCCCc--EEEeecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eE
Q 010847           99 GGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  173 (499)
Q Consensus        99 GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~  173 (499)
                      ..       ...++.+|..|++  |+....  ..... ....+-++.++.||+-.+.. .......++.||..|++  |+
T Consensus       128 t~-------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          128 QL-------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             CT-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTTCCEEEE
T ss_pred             cC-------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEECCCCcEEEE
Confidence            32       2349999998885  775431  11111 11123345688877643211 11124579999998865  87


Q ss_pred             Eee
Q 010847          174 AVE  176 (499)
Q Consensus       174 ~~~  176 (499)
                      .-.
T Consensus       198 ~~~  200 (599)
T 1w6s_A          198 AYA  200 (599)
T ss_dssp             EES
T ss_pred             EcC
Confidence            543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.74  E-value=2.4  Score=40.40  Aligned_cols=202  Identities=13%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeec------CC-CCCC-CCcceEEEEE---CCEEEEEcCcCCCCCccC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET------SG-KVPV-ARGGHSVTLV---GSRLIIFGGEDRSRKLLN  160 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~------~g-~~p~-~r~~~~~~~~---~~~lyv~GG~~~~~~~~~  160 (499)
                      ++.+++.|+.++      .+.+||+.+........      .+ ..+. ......++.+   ++.+++.|+.+      .
T Consensus        55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~  122 (408)
T 4a11_B           55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------K  122 (408)
T ss_dssp             TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------S
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC------C
Confidence            456777776533      38888887764321110      00 0111 1112222333   34566666643      3


Q ss_pred             cEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc
Q 010847          161 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  239 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  239 (499)
                      .+.+||+.+..-.....   .+.+.........+ ++.+++.|+.+     ..+.+||+.+..-...-  .  .....-.
T Consensus       123 ~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~~--~--~~~~~v~  190 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHIL--Q--GHRQEIL  190 (408)
T ss_dssp             EEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEEE--C--CCCSCEE
T ss_pred             eEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeeee--c--CCCCcEE
Confidence            68999998876544432   11121111111111 33366666644     46899998765432210  0  0111111


Q ss_pred             EEEEEC--CEEEEEeCCCCCCCcceEEEEECCCCc--eEEeccCCCC------CCCCCCCCceEEEEEcCceEEEEEcCC
Q 010847          240 AGITID--ENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGR------NPLASEGLSVCSAIIEGEHHLVAFGGY  309 (499)
Q Consensus       240 ~~~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~------~p~~~~~~~~~~~~~~~~~~l~v~GG~  309 (499)
                      +++...  ..+++.|+.++     .+.+||+.+..  ...+......      .....+......+....+...++.|+.
T Consensus       191 ~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          191 AVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             EEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            222222  23677776443     37788876543  2222111000      000112222333334333334555666


Q ss_pred             CCCCCceEEEEECCCCC
Q 010847          310 NGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       310 ~~~~~~~~~~~~~~~~~  326 (499)
                      ++    .+.+||+....
T Consensus       266 dg----~i~vwd~~~~~  278 (408)
T 4a11_B          266 DN----RMRLWNSSNGE  278 (408)
T ss_dssp             TS----CEEEEETTTCC
T ss_pred             CC----eEEEEECCCCc
Confidence            54    68888886543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=93.71  E-value=4.2  Score=37.47  Aligned_cols=101  Identities=16%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      +.+++.|+.+      ..+.+||+.+.......   ....  ....++.+  ++.+++.|+.+      ..+.+||+.+.
T Consensus       185 ~~~~~s~~~d------~~i~i~d~~~~~~~~~~---~~h~--~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~  247 (340)
T 4aow_A          185 NPIIVSCGWD------KLVKVWNLANCKLKTNH---IGHT--GYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEG  247 (340)
T ss_dssp             SCEEEEEETT------SCEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------CEEEEEETTTT
T ss_pred             CcEEEEEcCC------CEEEEEECCCCceeeEe---cCCC--CcEEEEEECCCCCEEEEEeCC------CeEEEEEeccC
Confidence            3455566543      23888999887654432   1111  11122223  45677777754      35888998876


Q ss_pred             eeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      .-......     . .....+.+ .++ .++.++.+     +.+.+||+.+..
T Consensus       248 ~~~~~~~~-----~-~~v~~~~~~~~~-~~~~~~~d-----~~i~iwd~~~~~  288 (340)
T 4aow_A          248 KHLYTLDG-----G-DIINALCFSPNR-YWLCAATG-----PSIKIWDLEGKI  288 (340)
T ss_dssp             EEEEEEEC-----S-SCEEEEEECSSS-SEEEEEET-----TEEEEEETTTTE
T ss_pred             ceeeeecC-----C-ceEEeeecCCCC-ceeeccCC-----CEEEEEECCCCe
Confidence            54332211     1 11222333 344 34555543     358888987765

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.70  E-value=2  Score=35.40  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=18.1

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhh
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  436 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (499)
                      ...+|+..+..++.....+++++..++.++++++
T Consensus        49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr   82 (168)
T 3o0z_A           49 LNRELQERNRILENSKSQTDKDYYQLQAILEAER   82 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555555555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=93.67  E-value=4  Score=41.65  Aligned_cols=205  Identities=16%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCC--------CCCCcceEEEEECCEEEEEcCcCCCCCccCcEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  163 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~--------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~  163 (499)
                      +..+|+..-.      .+.+.++|..+.+=...-..+.+        |.+|.....+..++..+++--.     ..+.++
T Consensus       255 Gk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----~~g~v~  323 (567)
T 1qks_A          255 DKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----ETGKIL  323 (567)
T ss_dssp             TTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----TTTEEE
T ss_pred             CCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec-----CCCeEE
Confidence            4466665432      24588899887654432222211        2233333222233333333211     245788


Q ss_pred             EEECCCCeeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccC-CCCCCcCcccEE
Q 010847          164 FLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-GDLVTGRAGHAG  241 (499)
Q Consensus       164 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-~~~p~~r~~~~~  241 (499)
                      ..|..+.....+..   .+.++.-|.+....+ .++|+...     ..|.|.++|+.+++-...-.. +..|.|..+...
T Consensus       324 ~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~  395 (567)
T 1qks_A          324 LVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  395 (567)
T ss_dssp             EEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             EEecCCCccceeee---eeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence            89987766544443   233455555544444 44455432     247899999998874432223 445555433332


Q ss_pred             EEEC--CEEEEEeCCCCCCCcceEEEEECCCC-----ceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC--C
Q 010847          242 ITID--ENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--K  312 (499)
Q Consensus       242 ~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~-----~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~  312 (499)
                       ...  +.+|+.+-..    ...+.++|..+.     .|+.+..++...     +.+....+..+..++||---.+.  .
T Consensus       396 -~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          396 -VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             -EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             -ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence             332  4566654211    235778887663     387766554321     11222223344467887442221  1


Q ss_pred             CCceEEEEECCCC
Q 010847          313 YNNEVFVMRLKPR  325 (499)
Q Consensus       313 ~~~~~~~~~~~~~  325 (499)
                      ..+.+.+||+.+.
T Consensus       466 ~~~~v~v~d~~~~  478 (567)
T 1qks_A          466 ISGSVAVFDIKAM  478 (567)
T ss_dssp             HHTCEEEEEGGGC
T ss_pred             cCceEEEEECCcc
Confidence            2457899998754

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.65  E-value=0.33  Score=47.21  Aligned_cols=29  Identities=7%  Similarity=0.236  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010847          420 ELSKELSSVQGQLVAERSRCFKLEAQIAE  448 (499)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  448 (499)
                      ++++.++.++.+++..-.+++.|+..|++
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLed  142 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA  142 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444443444444444333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.52  E-value=4.9  Score=39.26  Aligned_cols=160  Identities=8%  Similarity=-0.012  Sum_probs=78.8

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  172 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W  172 (499)
                      +.+++.|+.+      ..+.+||+.++........+  ........+.. ++.+++.|+.+      ..+.+||+.+.+.
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence            6677777753      23888998877643331111  11111111222 56666677643      3689999988764


Q ss_pred             EEeeecCC----------C-----------CCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEEC--CC-CceEeccc
Q 010847          173 DAVEVTQT----------P-----------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL--QT-NEWSQPEI  228 (499)
Q Consensus       173 ~~~~~~~~----------~-----------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~--~~-~~W~~~~~  228 (499)
                      ...-..+.          .           +....-..++...++.++++++..    -+.+.+||+  .+ ..+..+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~----d~~i~iw~~~~~~~~~l~~~~~  350 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA----TKCIIILEMSEKQKGDLALKQI  350 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----CSEEEEEEECSSSTTCEEEEEE
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----CCeEEEEEeccCCCCceeeccE
Confidence            33322110          0           001111122222333344444321    246888888  33 33444321


Q ss_pred             CCCCCCcCcccEEEEECCEEEEEeCCCCC----CCcceEEEEECCCCceE
Q 010847          229 KGDLVTGRAGHAGITIDENWYIVGGGDNN----NGCQETIVLNMTKLAWS  274 (499)
Q Consensus       229 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----~~~~~~~~~d~~~~~W~  274 (499)
                         .+....-.+++...+.+++..+....    ...-.+|.++..++.|.
T Consensus       351 ---~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          351 ---ITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             ---EECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             ---eccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence               11112223455556777777664332    22336788888888885

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=93.52  E-value=0.59  Score=44.57  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=82.5

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++++++.|+......-...++.|+..++.-...... .......+. +++.. ++.+++ ++.+      ..|.++|+.+
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~l~-~s~d------g~v~lWd~~~  124 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGILV-ASDS------GAVELWEILE  124 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEEEE-EETT------SCEEEC----
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCEEE-EECC------CEEEEeeccc
Confidence            577777777543322234578887665431100000 000011111 22223 445544 4432      2488888876


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE  246 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~  246 (499)
                      .+-....... .........++.+ .++..++.|+.+     ..|.+||+.+.+....-. +  . ...-.+++..  ++
T Consensus       125 ~~~~~~~~~~-~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~-~--h-~~~v~~v~~s~~~~  194 (357)
T 4g56_B          125 KESLLVNKFA-KYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKSYN-A--H-SSEVNCVAACPGKD  194 (357)
T ss_dssp             ----CCCCEE-ECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEEEC-C--C-SSCEEEEEECTTCS
T ss_pred             cceeEEEeec-cCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEc-C--C-CCCEEEEEEccCCC
Confidence            5422111000 0000111122233 355567777654     358899988776433210 1  0 0111122222  23


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+++.||.++     .+.++|+.+..-......      .........+... ....+++.|+.++    .+.++|+...
T Consensus       195 ~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd~~~~  259 (357)
T 4g56_B          195 TIFLSCGEDG-----RILLWDTRKPKPATRIDF------CASDTIPTSVTWHPEKDDTFACGDETG----NVSLVNIKNP  259 (357)
T ss_dssp             SCEEEEETTS-----CEEECCTTSSSCBCBCCC------TTCCSCEEEEEECTTSTTEEEEEESSS----CEEEEESSCG
T ss_pred             ceeeeeccCC-----ceEEEECCCCceeeeeee------ccccccccchhhhhcccceEEEeeccc----ceeEEECCCC
Confidence            5677776443     367778776542211111      0111112223332 2334666677654    5777777543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.51  E-value=3.8  Score=43.28  Aligned_cols=151  Identities=11%  Similarity=0.060  Sum_probs=78.7

Q ss_pred             CceEEEEECCCCcEE--EeecCCCCCCCCcceEEEE-ECC-EEEEEcCcCCCCCccCcEEEEECCCC--e-eEEeeecCC
Q 010847          108 SMIVRFIDLETNLCG--VMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--T-WDAVEVTQT  180 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~--~~~~~g~~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~--~-W~~~~~~~~  180 (499)
                      ...++.+++.+..-.  .+.  .....+........ -++ .|++.......  ..++++++|+.+.  . |..+.... 
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~-  316 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIPDL-  316 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEECSS-
T ss_pred             CCEEEEEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecCCC-
Confidence            345888888776521  222  11111222222222 244 45554432211  2568999999877  6 88776311 


Q ss_pred             CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCC--CceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC
Q 010847          181 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  258 (499)
Q Consensus       181 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  258 (499)
                        ...  ...+.-+++.||+....+  .....|+.+|+.+  ..|..+..  .....  ...+...++.+++....+   
T Consensus       317 --~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~~~--l~~~~~~~~~lv~~~~~d---  383 (741)
T 1yr2_A          317 --KAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP--ESKDN--LESVGIAGNRLFASYIHD---  383 (741)
T ss_dssp             --SSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC--CCSSE--EEEEEEEBTEEEEEEEET---
T ss_pred             --Cce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec--CCCCe--EEEEEEECCEEEEEEEEC---
Confidence              111  222233466677765432  2245799999988  57888642  11111  112233467777765432   


Q ss_pred             CcceEEEEECCCCceEEe
Q 010847          259 GCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       259 ~~~~~~~~d~~~~~W~~l  276 (499)
                      ....++++|+....-..+
T Consensus       384 g~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          384 AKSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             TEEEEEEEETTSCEEEEC
T ss_pred             CEEEEEEEeCCCCceeec
Confidence            245789999765544444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.48  E-value=5.4  Score=37.97  Aligned_cols=184  Identities=11%  Similarity=0.074  Sum_probs=87.8

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecCCCCC
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGG-HSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPA  183 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~  183 (499)
                      .+.+||+.++.-...-.. ..+..... ...+.+   ++.+++.|+.+.      .+.+||+...  .-..+.  +.   
T Consensus       181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~--~h---  248 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYH--GH---  248 (380)
T ss_dssp             CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEEC--CC---
T ss_pred             cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEEC--Cc---
Confidence            488899988865443211 12222211 122223   457888887643      5888888532  112221  10   


Q ss_pred             CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCC--CCcC-cccEEEE-ECCEEEEEeCCCCCCC
Q 010847          184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL--VTGR-AGHAGIT-IDENWYIVGGGDNNNG  259 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~--p~~r-~~~~~~~-~~~~l~v~GG~~~~~~  259 (499)
                      .-.-.+++...++..++.|+.+     ..+.+||+.++.-...-.....  .... .-.+++. .++.+++.|+.++   
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---  320 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---  320 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS---
T ss_pred             CCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC---
Confidence            1111223333455567777755     3588999987754332110100  0001 1122222 2566777766432   


Q ss_pred             cceEEEEECCCCceEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          260 CQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       260 ~~~~~~~d~~~~~W~~-l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                        .+.+||+.+..-.. +..+..     .+......+....+..+++.||.++    .+.+++++.
T Consensus       321 --~i~vwd~~~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~sgs~D~----~i~iW~~~~  375 (380)
T 3iz6_a          321 --DCYVWDTLLAEMVLNLGTLQN-----SHEGRISCLGLSSDGSALCTGSWDK----NLKIWAFSG  375 (380)
T ss_dssp             --CEEEEETTTCCEEEEECCSCS-----SCCCCCCEEEECSSSSEEEEECTTS----CEEEEECCS
T ss_pred             --CEEEEECCCCceEEEEecccC-----CCCCceEEEEECCCCCEEEEeeCCC----CEEEEecCC
Confidence              47889987665432 221111     0111122233333334566787765    566677654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.44  E-value=1.1  Score=33.18  Aligned_cols=54  Identities=22%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhh
Q 010847          383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  436 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (499)
                      .+.++++...++..+.....+..+|...+........+.+++...+.++++.+-
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT   60 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555444444455555555555555555555555444544444443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.43  E-value=6.2  Score=38.52  Aligned_cols=110  Identities=13%  Similarity=0.071  Sum_probs=54.3

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc-eEE-EEEC---CEEEEEcCcCCCCCccCcEEEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG-HSV-TLVG---SRLIIFGGEDRSRKLLNDVHFLD  166 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~-~~~~---~~lyv~GG~~~~~~~~~~v~~yd  166 (499)
                      ++..++.|+.      ...++.+++.+........ ..+...... .++ ..-+   +.+++.|+.+      ..+.+||
T Consensus       160 ~~~~l~~~~~------~g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd  226 (450)
T 2vdu_B          160 DDTTVIIADK------FGDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISH  226 (450)
T ss_dssp             TSSEEEEEET------TSEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeC------CCcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEE
Confidence            4555566653      2348888877654321000 011101111 122 2235   6677777754      3588999


Q ss_pred             CCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          167 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       167 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      +.+.........+    .......+.+.++.+++.|+.+     +.|.+||+.+++.
T Consensus       227 ~~~~~~~~~~~~~----h~~~v~~~~~sd~~~l~s~~~d-----~~v~vwd~~~~~~  274 (450)
T 2vdu_B          227 YPQCFIVDKWLFG----HKHFVSSICCGKDYLLLSAGGD-----DKIFAWDWKTGKN  274 (450)
T ss_dssp             ESCTTCEEEECCC----CSSCEEEEEECSTTEEEEEESS-----SEEEEEETTTCCE
T ss_pred             CCCCceeeeeecC----CCCceEEEEECCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence            8776543321111    1111122223244466666643     4689999888763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.34  E-value=6.1  Score=41.70  Aligned_cols=225  Identities=12%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             CCcccceEEEEcCCCCCcccCcEEEEEcC---CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEc
Q 010847           25 PSPRYKKLYIVGGSRNGRFLSDVQVFDLR---SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILG   99 (499)
Q Consensus        25 p~~r~~~l~~~GG~~~~~~~~~~~~yd~~---t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~G   99 (499)
                      |.+....+|.+-- ..+.....+|+.+..   .+.|+.+-.....          +  ...........+  +++.++++
T Consensus       114 p~pdG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l----------~--~~~~~~~~~~~~SPDG~~la~~  180 (741)
T 1yr2_A          114 PQRRGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTW----------A--KDGATALDAWAASDDGRLLAYS  180 (741)
T ss_dssp             CEEETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGC----------C------EEEEEEEECTTSSEEEEE
T ss_pred             CEEECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHh----------c--cCCCEEEEeEEECCCCCEEEEE
Confidence            4433335554432 222334678888887   7778775332210          0  000011122222  44545454


Q ss_pred             ccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCC--------CCccCcEEEEECCCC
Q 010847          100 GHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRS--------RKLLNDVHFLDLETM  170 (499)
Q Consensus       100 G~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~  170 (499)
                      ...... ....++++|+.++.......    +.... ..++.. ++.||+. ..+..        ......++.+++.+.
T Consensus       181 ~~~~G~-e~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~  253 (741)
T 1yr2_A          181 VQDGGS-DWRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTP  253 (741)
T ss_dssp             EEETTC-SEEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEE-ECCCC--------CCCCCEEEEEETTSC
T ss_pred             EcCCCC-ceEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEE-EecCcccccccccCCCCCEEEEEECCCC
Confidence            332221 13469999999998755421    11110 112222 3334443 22211        112456888898776


Q ss_pred             ee--EEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC--c-eEecccCCCCCCcCcccEEEEEC
Q 010847          171 TW--DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--E-WSQPEIKGDLVTGRAGHAGITID  245 (499)
Q Consensus       171 ~W--~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~--~-W~~~~~~~~~p~~r~~~~~~~~~  245 (499)
                      .-  ..+..  ....+........-.++..+++.........++++++|+.+.  . |..+...   ...... .....+
T Consensus       254 ~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~-~~~~dg  327 (741)
T 1yr2_A          254 QSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQWD-FVDGVG  327 (741)
T ss_dssp             GGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCEE-EEEEET
T ss_pred             chhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceEE-EEeccC
Confidence            42  12211  111122222333333443334333222223578999999877  6 7776421   111111 122346


Q ss_pred             CEEEEEeCCCCCCCcceEEEEECCC--CceEEec
Q 010847          246 ENWYIVGGGDNNNGCQETIVLNMTK--LAWSILT  277 (499)
Q Consensus       246 ~~l~v~GG~~~~~~~~~~~~~d~~~--~~W~~l~  277 (499)
                      +.+|+....+  .....++++|+.+  ..|..+.
T Consensus       328 ~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          328 DQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             TEEEEEECTT--CTTCEEEEEECSSSSCEEEEEE
T ss_pred             CEEEEEECCC--CCCCEEEEEeCCCCccccEEEe
Confidence            6777765432  2235799999988  5788774

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=93.33  E-value=7.9  Score=39.44  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=95.4

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+|+...     ..+.+.++|+.+++-...-+.                  +..-|.++..  +..+|+.+.       .
T Consensus       168 ~~~V~~~-----~~~~V~viD~~t~~v~~~i~~------------------g~~p~~v~~SpDGr~lyv~~~-------d  217 (567)
T 1qks_A          168 LFSVTLR-----DAGQIALIDGSTYEIKTVLDT------------------GYAVHISRLSASGRYLFVIGR-------D  217 (567)
T ss_dssp             EEEEEET-----TTTEEEEEETTTCCEEEEEEC------------------SSCEEEEEECTTSCEEEEEET-------T
T ss_pred             eEEEEeC-----CCCeEEEEECCCCeEEEEEeC------------------CCCccceEECCCCCEEEEEcC-------C
Confidence            5555543     234699999998865433222                  2222333333  467787542       2


Q ss_pred             ceEEEEECC--CCcEEEeecCCCCCCCCcceEEEEE-----CC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCC
Q 010847          109 MIVRFIDLE--TNLCGVMETSGKVPVARGGHSVTLV-----GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  180 (499)
Q Consensus       109 ~~~~~yd~~--t~~W~~~~~~g~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~  180 (499)
                      ..+.+||+.  +.+-..--..|..|     ..++..     ++ .+|+..-      ..+.+.++|..+.+=...-+.+.
T Consensus       218 g~V~viD~~~~t~~~v~~i~~G~~P-----~~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          218 GKVNMIDLWMKEPTTVAEIKIGSEA-----RSIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             SEEEEEETTSSSCCEEEEEECCSEE-----EEEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEEEEECCE
T ss_pred             CeEEEEECCCCCCcEeEEEecCCCC-----ceeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcEEEEEeccc
Confidence            459999996  55322111112222     223332     34 6666532      24578899988765443322221


Q ss_pred             C--------CCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CC-EEEE
Q 010847          181 P--------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYI  250 (499)
Q Consensus       181 ~--------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v  250 (499)
                      +        |.+|.........+.. +++--    ...+.++++|..+...-.+..   .+..+.-|..... ++ .+|+
T Consensus       287 ~~~~~~~~~p~~rva~i~~s~~~~~-~vv~~----~~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~v  358 (567)
T 1qks_A          287 MTYDEQEYHPEPRVAAILASHYRPE-FIVNV----KETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFIT  358 (567)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSE-EEEEE----TTTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEE
T ss_pred             cccccccccCCCceEEEEEcCCCCE-EEEEe----cCCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEE
Confidence            1        2233222222222333 33221    224578899987765433321   2334455554443 23 3444


Q ss_pred             EeCCCCCCCcceEEEEECCCCceEE
Q 010847          251 VGGGDNNNGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~~~~~W~~  275 (499)
                      ...     ..+.+.++|+.++.-..
T Consensus       359 a~~-----~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          359 AAN-----ARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             EEG-----GGTEEEEEETTTTEEEE
T ss_pred             EeC-----CCCeEEEEECCCCcEEE
Confidence            432     24578999999886443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.26  E-value=1.5  Score=41.42  Aligned_cols=191  Identities=9%  Similarity=-0.000  Sum_probs=88.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      .+..++.|+.+      ..+.++|+.++.-...... ....-...-.++.+  +++.++.|+.+      ..+.++|+.+
T Consensus        92 ~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~~-~~~~H~~~V~~v~~spdg~~l~sgs~d------~~i~iwd~~~  158 (344)
T 4gqb_B           92 GERGILVASDS------GAVELWELDENETLIVSKF-CKYEHDDIVSTVSVLSSGTQAVSGSKD------ICIKVWDLAQ  158 (344)
T ss_dssp             TTTEEEEEETT------SEEEEEEECTTSSCEEEEE-EEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCeEEEEECC------CEEEEEeccCCCceeEeec-cccCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCC
Confidence            44445556543      3488888887653222100 00000111122233  45677777654      3589999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc-EEEEE--
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGITI--  244 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~~~--  244 (499)
                      .+-...-. +    ....-.++.+.  +..+++.|+.+     +.|.+||+.+.+-...   -......... +++..  
T Consensus       159 ~~~~~~~~-~----h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          159 QVVLSSYR-A----HAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQ---IGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             TEEEEEEC-C----CSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEE---CC----CCCEEEEEECSS
T ss_pred             CcEEEEEc-C----cCCceEEEEecCCCCCceeeeccc-----cccccccccccceeee---eecceeeccceeeeecCC
Confidence            76432211 1    11122233332  33467777654     3588999887654331   0011111111 22222  


Q ss_pred             CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEcCCCCCCCceEEEEECC
Q 010847          245 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       245 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      ++.+++.|+.++     .+.+||+.+..-  +..+..      +......+.... ...+++.|+.++    .+.++|..
T Consensus       226 ~~~~l~sg~~dg-----~v~~wd~~~~~~--~~~~~~------h~~~v~~v~fsp~g~~~lasgs~D~----~i~vwd~~  288 (344)
T 4gqb_B          226 QSEVFVFGDENG-----TVSLVDTKSTSC--VLSSAV------HSQCVTGLVFSPHSVPFLASLSEDC----SLAVLDSS  288 (344)
T ss_dssp             CTTEEEEEETTS-----EEEEEESCC--C--CEEEEC------CSSCEEEEEECSSSSCCEEEEETTS----CEEEECTT
T ss_pred             CCcceEEeccCC-----cEEEEECCCCcE--EEEEcC------CCCCEEEEEEccCCCeEEEEEeCCC----eEEEEECC
Confidence            346777776433     477888876532  111111      111222333322 234556676654    57777775


Q ss_pred             CC
Q 010847          324 PR  325 (499)
Q Consensus       324 ~~  325 (499)
                      ..
T Consensus       289 ~~  290 (344)
T 4gqb_B          289 LS  290 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.21  E-value=0.79  Score=44.87  Aligned_cols=146  Identities=11%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             EEEEcCcCCCCCccCcEEEEECCCC---eeEEeeecCCCCCCCccceEEEE-c-CcEEEEEcCCCCCCCCCcEEEEECCC
Q 010847          146 LIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQT  220 (499)
Q Consensus       146 lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~~~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~  220 (499)
                      +++.|+.+      ..+.+||+.+.   .+.. ...............+.+ . ++.+++.|+.+     +.|.+||+.+
T Consensus       196 ~l~s~~~d------g~i~vwd~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~  263 (430)
T 2xyi_A          196 YLLSASDD------HTICLWDINATPKEHRVI-DAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRN  263 (430)
T ss_dssp             EEEEECTT------SCEEEEETTSCCBGGGEE-ECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred             eEEEEeCC------CeEEEEeCCCCCCCCcee-ccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCC
Confidence            67777653      35888998762   2211 100000011111222333 2 44466666543     4689999876


Q ss_pred             Cc-eEecccCCCCCCcCcccEEEEE---CCEEEEEeCCCCCCCcceEEEEECCCCc--eEEeccCCCCCCCCCCCCceEE
Q 010847          221 NE-WSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCS  294 (499)
Q Consensus       221 ~~-W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~p~~~~~~~~~~  294 (499)
                      .. ...+..   ..........+.+   +..+++.|+.++     .+.+||+.+..  -..+..         +......
T Consensus       264 ~~~~~~~~~---~~~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~---------h~~~v~~  326 (430)
T 2xyi_A          264 NNTSKPSHT---VDAHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFES---------HKDEIFQ  326 (430)
T ss_dssp             SCSSSCSEE---EECCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEC---------CSSCEEE
T ss_pred             CCCCcceeE---eecCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeec---------CCCCEEE
Confidence            52 111100   0001111122223   234777877543     47888886532  111111         1122223


Q ss_pred             EEEcC-ceEEEEEcCCCCCCCceEEEEECCC
Q 010847          295 AIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       295 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +.... ...+++.||.++    .+.+||+..
T Consensus       327 i~~sp~~~~~l~s~~~d~----~i~iwd~~~  353 (430)
T 2xyi_A          327 VQWSPHNETILASSGTDR----RLHVWDLSK  353 (430)
T ss_dssp             EEECSSCTTEEEEEETTS----CCEEEEGGG
T ss_pred             EEECCCCCCEEEEEeCCC----cEEEEeCCC
Confidence            33332 335666677654    577788755

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=93.20  E-value=1.5  Score=42.97  Aligned_cols=19  Identities=11%  Similarity=0.305  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q 010847          459 IENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       459 ~~~e~~~~~~~~~~~~~~~  477 (499)
                      |+..++.+.++++.++..+
T Consensus       173 L~~~~~~l~~ki~~l~~~~  191 (464)
T 1m1j_B          173 LRAVIDSLHKKIQKLENAI  191 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=93.16  E-value=5.3  Score=36.95  Aligned_cols=155  Identities=6%  Similarity=-0.066  Sum_probs=80.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.||+.+...      ..+++||+.++....+..   .+ ...-++++.. ++++|+.+..+..  ..+.+++||+.+.
T Consensus        55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~---~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~  122 (333)
T 2dg1_A           55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV---SH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD  122 (333)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEE---CS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred             CCCEEEEECCC------CEEEEEeCCCCcEEEEee---CC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence            46788776532      349999999998876642   11 1112233332 5678877543211  1357999999887


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CC-E
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-N  247 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~  247 (499)
                      ....+...  ......-..++...++.+|+..... .......++++|+.+.....+...  .   ....+++.. ++ .
T Consensus       123 ~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          123 NLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---SVANGIALSTDEKV  195 (333)
T ss_dssp             SCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---SSEEEEEECTTSSE
T ss_pred             EEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---CcccceEECCCCCE
Confidence            76533221  1112222233333456677654321 111235699999887666554211  0   111223332 33 4


Q ss_pred             EEEEeCCCCCCCcceEEEEECCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +|+....     .+.+++||+.+
T Consensus       196 l~v~~~~-----~~~i~~~d~~~  213 (333)
T 2dg1_A          196 LWVTETT-----ANRLHRIALED  213 (333)
T ss_dssp             EEEEEGG-----GTEEEEEEECT
T ss_pred             EEEEeCC-----CCeEEEEEecC
Confidence            7766432     23688999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.13  E-value=13  Score=41.70  Aligned_cols=148  Identities=11%  Similarity=0.069  Sum_probs=70.9

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      .+++.|+.+      ..+.+||+.++.....-   ....  ....++.+  ++..++.|+.+      ..+.++|+.+..
T Consensus       714 ~~l~sg~~d------~~v~vwd~~~~~~~~~~---~~h~--~~v~~~~~sp~~~~l~s~s~d------g~v~vwd~~~~~  776 (1249)
T 3sfz_A          714 LLLATGSND------FFLKLWDLNQKECRNTM---FGHT--NSVNHCRFSPDDELLASCSAD------GTLRLWDVRSAN  776 (1249)
T ss_dssp             CEEEEEETT------SCEEEEETTSSSEEEEE---CCCS--SCEEEEEECSSTTEEEEEESS------SEEEEEEGGGTE
T ss_pred             eEEEEEeCC------CeEEEEECCCcchhhee---cCCC--CCEEEEEEecCCCEEEEEECC------CeEEEEeCCCCc
Confidence            455555543      23889999888654332   1111  11122222  45566666643      358888887765


Q ss_pred             eEEeeecCCC-------CC--CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEE
Q 010847          172 WDAVEVTQTP-------PA--PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  242 (499)
Q Consensus       172 W~~~~~~~~~-------p~--~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  242 (499)
                      -.........       +.  .....+++...++..+++++      .+.+..||+.+.........+   ....-.+++
T Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------~~~v~~~d~~~~~~~~~~~~~---~~~~v~~~~  847 (1249)
T 3sfz_A          777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA------KNKVLLFDIHTSGLLAEIHTG---HHSTIQYCD  847 (1249)
T ss_dssp             EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE------TTEEEEEETTTCCEEEEEECS---SSSCCCEEE
T ss_pred             ccceecccccccccCCccccccceEEEEEECCCCCEEEEEc------CCcEEEEEecCCCceeEEcCC---CCCceEEEE
Confidence            3322211100       00  00111122223444555554      247899999887654421111   111111222


Q ss_pred             EE-CCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          243 TI-DENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       243 ~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      .. ++.++++|+.++     .+.+||+.+..
T Consensus       848 ~sp~~~~l~~~~~dg-----~v~vwd~~~~~  873 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQY-----CVELWNIDSRL  873 (1249)
T ss_dssp             ECSSTTEEEEECSSS-----CEEEEETTTTE
T ss_pred             EcCCCCEEEEEeCCC-----eEEEEEcCCCc
Confidence            22 456777776443     47788887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.06  E-value=3.4  Score=42.77  Aligned_cols=151  Identities=13%  Similarity=-0.003  Sum_probs=82.4

Q ss_pred             CceEEEEECC-CC---cEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCC-C
Q 010847          108 SMIVRFIDLE-TN---LCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT-P  181 (499)
Q Consensus       108 ~~~~~~yd~~-t~---~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~  181 (499)
                      ...++++|+. ++   ....+..   .. .......+. -+++||+.+..+.    ...++.+|+.+.++..+..... .
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~---~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLG---GP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEE---ET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CcEEEEEEECCCCcccccEEeCC---CC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccc
Confidence            3579999998 57   4444431   11 111122222 2567777665432    3469999998888887754211 0


Q ss_pred             CCCCc---cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEE-EEECCEEEEEeCCCCC
Q 010847          182 PAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG-ITIDENWYIVGGGDNN  257 (499)
Q Consensus       182 p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~~  257 (499)
                      -.+..   ...++...++.+++.+..    ....+|.+|+.++....+..    +. .....+ ...++.+++..+... 
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~~~~~~~~~-  357 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRAVGVAASPR-  357 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEEEEEEEETT-
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEEEEEEcCCC-
Confidence            00111   112333345556665543    24578999998888776632    11 111222 334566666554322 


Q ss_pred             CCcceEEEEECCCCceEEec
Q 010847          258 NGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       258 ~~~~~~~~~d~~~~~W~~l~  277 (499)
                       ....+|.+|+.+...+.+.
T Consensus       358 -~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          358 -TAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             -EEEEEEEEETTTCCEEEEE
T ss_pred             -CCCEEEEEECCCCceEEee
Confidence             2347899999888877764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.05  E-value=4.9  Score=36.24  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=92.3

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      ..+.+||+. +.+.......                ....-++++.. ++.||+....      ...+++||+. +....
T Consensus        83 ~~v~~~d~~-g~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           83 NKIGKLSKK-GGFTEYPLPQ----------------PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSS----------------TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEE
T ss_pred             CeEEEECCC-CCeEEecCCC----------------CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEE
Confidence            358899988 7776544321                01222333333 5778876432      2349999987 66665


Q ss_pred             eecCCCCCCC-CcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEE
Q 010847          124 METSGKVPVA-RGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIV  200 (499)
Q Consensus       124 ~~~~g~~p~~-r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v  200 (499)
                      ..    .+.. ..-+.++. -+++||+....      .+.+++||+ +.+...+..    |........+.+ .++.+|+
T Consensus       139 ~~----~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v  203 (300)
T 2qc5_A          139 YD----LPNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWF  203 (300)
T ss_dssp             EE----CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEE
T ss_pred             cc----CCCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEE
Confidence            43    1211 11223333 24578875421      346899998 666665432    112222233333 3555777


Q ss_pred             EcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEe
Q 010847          201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       201 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l  276 (499)
                      ....     .+.+++||+ ++.+.....    +........+.+  ++.+||....     .+.+.+||+ +......
T Consensus       204 ~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          204 VEIM-----GNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEY  265 (300)
T ss_dssp             EETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEE
T ss_pred             EccC-----CCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEE
Confidence            5422     246899998 556555421    111122222333  4577776531     236889998 4555544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.92  E-value=5.8  Score=36.75  Aligned_cols=235  Identities=13%  Similarity=0.058  Sum_probs=106.8

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-C----CEEEEEcccCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G----TKLLILGGHYKKS  105 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~----~~iyv~GG~~~~~  105 (499)
                      .+++.|+...  .-..+.+||+.++..........                 .....++.+ .    +.+++.|+.++  
T Consensus        32 ~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~l~~~~~dg--   90 (357)
T 3i2n_A           32 KFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEK-----------------AKPIKCGTFGATSLQQRYLATGDFGG--   90 (357)
T ss_dssp             EEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEE-----------------SSCEEEEECTTCCTTTCCEEEEETTS--
T ss_pred             eEEEecCccC--CCcEEEEEeCCCCcccceeeecc-----------------cCcEEEEEEcCCCCCCceEEEecCCC--
Confidence            5666665411  12358899999887655433210                 111122222 1    36666776533  


Q ss_pred             CCCceEEEEECCCCc--EEEeecCCCCCCCCcceEEEE-------ECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEE
Q 010847          106 SDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-------VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA  174 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~  174 (499)
                          .+.+||..+..  -..+.   ....+.  .++..       -++.+++.|+.+      ..+.+||+.+..  ...
T Consensus        91 ----~i~iwd~~~~~~~~~~~~---~~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           91 ----NLHIWNLEAPEMPVYSVK---GHKEII--NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             ----CEEEECTTSCSSCSEEEC---CCSSCE--EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEE
T ss_pred             ----eEEEEeCCCCCccEEEEE---ecccce--EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCccee
Confidence                38888888765  22221   111111  11111       245566666643      358889987754  333


Q ss_pred             eeecCCCCCCCccceEEE---E-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE----CC
Q 010847          175 VEVTQTPPAPRYDHSAAL---H-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DE  246 (499)
Q Consensus       175 ~~~~~~~p~~r~~~~~~~---~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~  246 (499)
                      +..... ...+...+++.   + .++.+++.|+.+     ..+.+||+.+..-.....     ....-.+++..    ++
T Consensus       156 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~  224 (357)
T 3i2n_A          156 MEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETN-----IKNGVCSLEFDRKDISM  224 (357)
T ss_dssp             ECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEE-----CSSCEEEEEESCSSSSC
T ss_pred             ccccCC-CCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecC-----CCCceEEEEcCCCCCCC
Confidence            322100 00111112221   1 344466666543     368999998876433211     11112233333    35


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEcCCCCCCCceEEEEECCC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ..+++|+.++     .+.+||+.+..-  +..+... ....+......+.... ...+++.|+.++    .+.++|+..
T Consensus       225 ~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~  291 (357)
T 3i2n_A          225 NKLVATSLEG-----KFHVFDMRTQHP--TKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAG----GLHLWKYEY  291 (357)
T ss_dssp             CEEEEEESTT-----EEEEEEEEEEET--TTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTS----EEEEEEEEC
T ss_pred             CEEEEECCCC-----eEEEEeCcCCCc--ccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCC----cEEEeecCC
Confidence            6666665432     466777654320  0000000 0000111222333333 343677777765    677777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=92.88  E-value=7.5  Score=37.96  Aligned_cols=121  Identities=17%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCC---CCC
Q 010847           30 KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK---KSS  106 (499)
Q Consensus        30 ~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~---~~~  106 (499)
                      ..+|+.-....... +.+.++|+.+++=...-+.+.               .|  +..+..-+..+|+.--...   .+.
T Consensus        85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG~---------------~P--gia~SpDgk~lyVan~~~~~~~~G~  146 (426)
T 3c75_H           85 RRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGGF---------------LP--HPVAAEDGSFFAQASTVFERIARGK  146 (426)
T ss_dssp             TEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEECS---------------SC--EEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECCC---------------CC--ceEECCCCCEEEEEeccccccccCC
Confidence            37888865322111 789999999887544333321               12  2222233567887631100   000


Q ss_pred             CCceEEEEECCCCcEEE-eecCCCCC--CCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCeeE
Q 010847          107 DSMIVRFIDLETNLCGV-METSGKVP--VARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD  173 (499)
Q Consensus       107 ~~~~~~~yd~~t~~W~~-~~~~g~~p--~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~  173 (499)
                      ..+.+.++|+.+++-.. +...+...  ....-+.++.  -+.++|+..-.     ..+.+.++|+.+++-.
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeEE
Confidence            13569999999987543 32110000  0111122222  34578886321     1467999999887653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=92.88  E-value=1  Score=44.10  Aligned_cols=61  Identities=11%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCe----eEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEE
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVL  216 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~  216 (499)
                      ++.+++.|+.+      ..+.+||+.+..    -..+..      ......++.+.  +.++++.|+.+     +.|.+|
T Consensus       243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vw  305 (430)
T 2xyi_A          243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSAD-----KTVALW  305 (430)
T ss_dssp             CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEETT-----SEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence            45677776643      468999987652    111211      11222333343  33477777764     358999


Q ss_pred             ECCC
Q 010847          217 DLQT  220 (499)
Q Consensus       217 d~~~  220 (499)
                      |+.+
T Consensus       306 d~~~  309 (430)
T 2xyi_A          306 DLRN  309 (430)
T ss_dssp             ETTC
T ss_pred             eCCC
Confidence            9876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.80  E-value=9.6  Score=38.96  Aligned_cols=124  Identities=13%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCCCCCCCc---ceEEEEECCEEEEEcCcCCCCCccCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARG---GHSVTLVGSRLIIFGGEDRSRKLLND  161 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~---~~~~~~~~~~lyv~GG~~~~~~~~~~  161 (499)
                      +.++.++.||+....       +.++.+|..|++  |+.-........+.+   ..+.++.+++||+...       ...
T Consensus        63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~  128 (582)
T 1flg_A           63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS  128 (582)
T ss_dssp             CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred             ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence            346679999998653       239999998874  876542111101111   1334567888887532       246


Q ss_pred             EEEEECCCCe--eEEeeecCCCCCC-CccceEEEEcC----cEEEEEcCCCC-CCCCCcEEEEECCCCc--eEec
Q 010847          162 VHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHAN----RYLIVFGGCSH-SIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       162 v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~----~~l~v~GG~~~-~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ++.+|..|++  |+.-..  ..... ....+.++.++    ..++++|.... ......++.||+.+++  |+..
T Consensus       129 l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            9999998874  875431  10000 01112233333    11334443211 1224579999998876  8753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.79  E-value=7  Score=37.36  Aligned_cols=152  Identities=15%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ++++++.|+.+      ..+.++|+.+.+-...-. +   ....-.++....++..++.|+.+     ..+.++|+.+..
T Consensus       134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~-~---h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~  198 (393)
T 1erj_A          134 DGKFLATGAED------RLIRIWDIENRKIVMILQ-G---HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ  198 (393)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcEEEEEc-c---CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence            45667777653      358999998876533321 1   11111223333344456666644     368899998876


Q ss_pred             eEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010847          223 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  300 (499)
Q Consensus       223 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~  300 (499)
                      ....-. .    .....+++..  ++.+++.|+.++     .+.+||+.+..-......... ....+......+....+
T Consensus       199 ~~~~~~-~----~~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          199 CSLTLS-I----EDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENE-SGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             EEEEEE-C----SSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTT
T ss_pred             eEEEEE-c----CCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeeccccc-CCCCCCCCEEEEEECCC
Confidence            543211 0    1111122222  456777776543     377889877654322111100 00111222333444333


Q ss_pred             eEEEEEcCCCCCCCceEEEEECCC
Q 010847          301 HHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       301 ~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ..+++.|+.++    .+.++|+..
T Consensus       268 g~~l~s~s~d~----~v~~wd~~~  287 (393)
T 1erj_A          268 GQSVVSGSLDR----SVKLWNLQN  287 (393)
T ss_dssp             SSEEEEEETTS----EEEEEEC--
T ss_pred             CCEEEEEeCCC----EEEEEECCC
Confidence            34556677655    677777754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.66  E-value=7.3  Score=37.24  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      +++.++.|+.++      .+.+||+.++.-...-   .... ..-.+++.. ++..++.|+.+      ..+.++|+.+.
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~h~-~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~  197 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QGHE-QDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTG  197 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCS-SCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEE---ccCC-CCEEEEEEcCCCCEEEEecCC------CcEEEEECCCC
Confidence            456677776533      3899999887644332   1111 111222222 34555666543      35889999887


Q ss_pred             eeEEeeecCCCCCCCccceEEEE-c-CcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      +....-..      ......+.+ . ++.+++.|+.+     ..+.+||+.+..-
T Consensus       198 ~~~~~~~~------~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~  241 (393)
T 1erj_A          198 QCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFL  241 (393)
T ss_dssp             EEEEEEEC------SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCE
T ss_pred             eeEEEEEc------CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcE
Confidence            65433221      111222333 2 55577777754     3588999887653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.65  E-value=0.65  Score=56.56  Aligned_cols=12  Identities=8%  Similarity=0.385  Sum_probs=6.6

Q ss_pred             ccccCCCCCeEE
Q 010847            6 WHLELPYDLWVT   17 (499)
Q Consensus         6 ~~~~~~~~~W~~   17 (499)
                      |.+|+..++|..
T Consensus      1252 y~~~~~~~~w~~ 1263 (3245)
T 3vkg_A         1252 YSVSIDDANWSL 1263 (3245)
T ss_dssp             EEECTTTCSEEE
T ss_pred             EEEECCCCeeee
Confidence            444555666653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.46  E-value=5.3  Score=37.84  Aligned_cols=109  Identities=7%  Similarity=-0.036  Sum_probs=56.2

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc-------EEEeecCCCCCCCCcceEEEE-EC----C---EEEEEcC
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-------CGVMETSGKVPVARGGHSVTL-VG----S---RLIIFGG  151 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~~~~~g~~p~~r~~~~~~~-~~----~---~lyv~GG  151 (499)
                      .++.+...+++.|+.+      ..+.+||+.+..       -..+.   ....+.  .+++. -+    +   .+++.|+
T Consensus        20 ~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~---~h~~~v--~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           20 FSVSACNSFTVSCSGD------GYLKVWDNKLLDNENPKDKSYSHF---VHKSGL--HHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             EEEEECSSEEEEEETT------SEEEEEESBCCTTCCGGGGEEEEE---CCTTCE--EEEEEEEEEETTTEEEEEEEEEE
T ss_pred             EEEEecCCeEEEEcCC------CEEEEEECCCcccccCCCcceEEe---cCCCcE--EEEEEecccccCCccccEEEEEc
Confidence            3344445677777653      348889988876       33332   111111  12222 23    5   7777776


Q ss_pred             cCCCCCccCcEEEEECCCCe------eEEeeecCCCCCC---CccceEEEE----cCcEE-EEEcCCCCCCCCCcEEEEE
Q 010847          152 EDRSRKLLNDVHFLDLETMT------WDAVEVTQTPPAP---RYDHSAALH----ANRYL-IVFGGCSHSIFFNDLHVLD  217 (499)
Q Consensus       152 ~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~p~~---r~~~~~~~~----~~~~l-~v~GG~~~~~~~~~i~~~d  217 (499)
                      .+      ..+.+||+.+..      +..+...   +..   ..-.++...    .++.. ++.|+.+     ..+.+||
T Consensus        89 ~d------g~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd  154 (397)
T 1sq9_A           89 FS------GDLLFYRITREDETKKVIFEKLDLL---DSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWK  154 (397)
T ss_dssp             TT------SCEEEEEEEECTTTCCEEEEEECCS---CTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEE
T ss_pred             CC------CCEEEEEccCCcccccccceeeccc---ccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEe
Confidence            53      358888887665      5555421   100   112223333    34445 7777654     3588888


Q ss_pred             CCC
Q 010847          218 LQT  220 (499)
Q Consensus       218 ~~~  220 (499)
                      +.+
T Consensus       155 ~~~  157 (397)
T 1sq9_A          155 FHP  157 (397)
T ss_dssp             EES
T ss_pred             CCc
Confidence            766

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.43  E-value=0.89  Score=55.42  Aligned_cols=14  Identities=14%  Similarity=0.354  Sum_probs=9.5

Q ss_pred             EEEEcCCCceEEee
Q 010847           48 QVFDLRSLAWSNLR   61 (499)
Q Consensus        48 ~~yd~~t~~W~~~~   61 (499)
                      +.+|+.++.|....
T Consensus      1252 y~~~~~~~~w~~W~ 1265 (3245)
T 3vkg_A         1252 YSVSIDDANWSLWK 1265 (3245)
T ss_dssp             EEECTTTCSEEETT
T ss_pred             EEEECCCCeeeehh
Confidence            45577788887744

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.35  E-value=8  Score=36.96  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcE-EEEEcCCCCCCCCCcEEEEECCC
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRY-LIVFGGCSHSIFFNDLHVLDLQT  220 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~-l~v~GG~~~~~~~~~i~~~d~~~  220 (499)
                      ++.+++.|+.+      ..+.+||+.+..-......   . .......+.+ .++. +++.|+.+     ..+.+||+.+
T Consensus       258 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~  322 (420)
T 3vl1_A          258 YGKYVIAGHVS------GVITVHNVFSKEQTIQLPS---K-FTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRS  322 (420)
T ss_dssp             TTEEEEEEETT------SCEEEEETTTCCEEEEECC---T-TSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCceeEEccc---c-cCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCC
Confidence            45666666643      3589999987653322211   1 1112223333 3433 66666644     3689999887


Q ss_pred             Cce--EecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          221 NEW--SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       221 ~~W--~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      ..-  ..+..  .  ....-.++...++.+++.|+.++     .+.+||+..
T Consensus       323 ~~~~~~~~~~--~--~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~  365 (420)
T 3vl1_A          323 PECPVGEFLI--N--EGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD  365 (420)
T ss_dssp             TTSCSEEEEE--S--TTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred             CcCchhhhhc--c--CCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence            542  22211  0  11112233344677777777442     366666544

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.28  E-value=1.3  Score=31.62  Aligned_cols=13  Identities=8%  Similarity=0.100  Sum_probs=5.0

Q ss_pred             HHHHHHHHhHHHH
Q 010847          461 NEVQILRQQKSAF  473 (499)
Q Consensus       461 ~e~~~~~~~~~~~  473 (499)
                      .+....+.++..+
T Consensus        62 ~E~~~wq~Rl~~L   74 (81)
T 2jee_A           62 EQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333334443333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.27  E-value=3  Score=31.86  Aligned_cols=75  Identities=9%  Similarity=0.101  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHH----hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          383 IDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       383 ~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ...|..+...|...+.....    .+..|+.++.......+.....+.++.+.+..+....+-.-..+.+++.++-..-
T Consensus        12 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai   90 (111)
T 2v66_B           12 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI   90 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44555555555544444332    3555666666666666666666666666666666666666666666666654443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.26  E-value=6.2  Score=35.52  Aligned_cols=191  Identities=8%  Similarity=0.065  Sum_probs=93.4

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.||+.+...     ...+.+||.....-..+.   .... ..-+.++. -+++||+....      .+.+++||+...
T Consensus        88 ~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~---~~~~-~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~  152 (286)
T 1q7f_A           88 SGDIIVTERSP-----THQIQIYNQYGQFVRKFG---ATIL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGN  152 (286)
T ss_dssp             TTEEEEEECGG-----GCEEEEECTTSCEEEEEC---TTTC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSC
T ss_pred             CCeEEEEcCCC-----CCEEEEECCCCcEEEEec---CccC-CCceEEEEeCCCCEEEEECC------CCEEEEEcCCCC
Confidence            67899876321     234899995544333332   1111 11123333 24678886542      346899997655


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY  249 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~  249 (499)
                      ....+...+..   ..-..++...++.+|+.+..     .+.|++||+.......+...+...   .-.+++.. ++.+|
T Consensus       153 ~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~  221 (286)
T 1q7f_A          153 VLHKFGCSKHL---EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEIL  221 (286)
T ss_dssp             EEEEEECTTTC---SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEE
T ss_pred             EEEEeCCCCcc---CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEE
Confidence            44444321111   11123333446678876532     256999998665444432111111   11223332 45788


Q ss_pred             EEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          250 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       250 v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      |....+.    ..+.+||+....-..+.....       ......+.++.+..||+.. .+    +.+.+|++..
T Consensus       222 v~~~~~~----~~i~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~~~g~l~vs~-~~----~~v~v~~~~~  280 (286)
T 1q7f_A          222 IADNHNN----FNLTIFTQDGQLISALESKVK-------HAQCFDVALMDDGSVVLAS-KD----YRLYIYRYVQ  280 (286)
T ss_dssp             EEECSSS----CEEEEECTTSCEEEEEEESSC-------CSCEEEEEEETTTEEEEEE-TT----TEEEEEECSC
T ss_pred             EEeCCCC----EEEEEECCCCCEEEEEcccCC-------CCcceeEEECCCCcEEEEC-CC----CeEEEEEccc
Confidence            8764321    158899976554333322110       0111223333334577664 22    3677777643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.23  E-value=6.4  Score=35.60  Aligned_cols=183  Identities=10%  Similarity=0.076  Sum_probs=80.9

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCc-EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.+++.|+.++      .+..+++.... ...+.   .+........++.+++.+++.|+.+      ..+.+||....
T Consensus        70 ~~~~l~~~~~dg------~i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~  134 (313)
T 3odt_A           70 EKELLLFGGKDT------MINGVPLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSL  134 (313)
T ss_dssp             TTTEEEEEETTS------CEEEEETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEE
T ss_pred             CCCEEEEecCCC------eEEEEEeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcE
Confidence            455666666533      27777765432 11111   1111112223333455566666643      35788883222


Q ss_pred             eeEEeeecCCCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  247 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  247 (499)
                      ... +.   ..  ...-.++...  +++ .++.|+.+     ..+.+||..... ..+   . .+....-.+++.. ++.
T Consensus       135 ~~~-~~---~~--~~~v~~~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~-~~~---~-~~~~~~i~~~~~~~~~~  197 (313)
T 3odt_A          135 VYN-LQ---AH--NASVWDAKVVSFSEN-KFLTASAD-----KTIKLWQNDKVI-KTF---S-GIHNDVVRHLAVVDDGH  197 (313)
T ss_dssp             EEE-EE---CC--SSCEEEEEEEETTTT-EEEEEETT-----SCEEEEETTEEE-EEE---C-SSCSSCEEEEEEEETTE
T ss_pred             EEe-cc---cC--CCceeEEEEccCCCC-EEEEEECC-----CCEEEEecCceE-EEE---e-ccCcccEEEEEEcCCCe
Confidence            221 11   11  1111222222  344 56666644     358888833221 111   1 1111112233333 455


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                       ++.|+.++     .+.+||+.+..-...  +..      +......+....+.. ++.|+.++    .+.+||+...
T Consensus       198 -~~~~~~dg-----~i~i~d~~~~~~~~~--~~~------~~~~i~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~  256 (313)
T 3odt_A          198 -FISCSNDG-----LIKLVDMHTGDVLRT--YEG------HESFVYCIKLLPNGD-IVSCGEDR----TVRIWSKENG  256 (313)
T ss_dssp             -EEEEETTS-----EEEEEETTTCCEEEE--EEC------CSSCEEEEEECTTSC-EEEEETTS----EEEEECTTTC
T ss_pred             -EEEccCCC-----eEEEEECCchhhhhh--hhc------CCceEEEEEEecCCC-EEEEecCC----EEEEEECCCC
Confidence             66665432     588899877653321  111      011223333433333 45566654    6888887655

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.13  E-value=6.7  Score=35.61  Aligned_cols=92  Identities=11%  Similarity=0.026  Sum_probs=43.0

Q ss_pred             CcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCC
Q 010847          211 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE  288 (499)
Q Consensus       211 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~  288 (499)
                      ..+.++|..+..-.....   ..  .....++..  ++.+++.+|..+.    .+.+||+.+..-.  ..+.+.      
T Consensus       221 ~~i~lwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~~~sg~~d~----~i~iwd~~~~~~~--~~l~gH------  283 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVD---AH--SQVCSILWSPHYKELISGHGFAQN----QLVIWKYPTMAKV--AELKGH------  283 (318)
T ss_dssp             CEEEEEETTTCCEEEEEE---CS--SCEEEEEEETTTTEEEEEECTTTC----CEEEEETTTCCEE--EEECCC------
T ss_pred             CEEEEEeccccccccccc---ce--eeeeeeeecccccceEEEEEcCCC----EEEEEECCCCcEE--EEEcCC------
Confidence            357788877665433211   11  111122222  3455555553322    4788998776532  222211      


Q ss_pred             CCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       289 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      ......+....+..+++.||.++    .+.++|+.
T Consensus       284 ~~~V~~l~~spdg~~l~S~s~D~----~v~iWd~~  314 (318)
T 4ggc_A          284 TSRVLSLTMSPDGATVASAAADE----TLRLWRCF  314 (318)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTT----EEEEECCS
T ss_pred             CCCEEEEEEcCCCCEEEEEecCC----eEEEEECC
Confidence            11223333333333566677665    56666653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=92.06  E-value=9.8  Score=37.33  Aligned_cols=283  Identities=12%  Similarity=-0.043  Sum_probs=120.9

Q ss_pred             cccceEEEEcCCCC--CcccCcEEEEEcC--CCceEEeeeCcccccCccccCCCC-CCCCCccceeEE--EECCEEEEEc
Q 010847           27 PRYKKLYIVGGSRN--GRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLL-EVLPPMSDHCMV--KWGTKLLILG   99 (499)
Q Consensus        27 ~r~~~l~~~GG~~~--~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~-~~p~~r~~~s~~--~~~~~iyv~G   99 (499)
                      ||-..+|++.+..+  ......+.+.|..  +.+..++-.....+...+|.++++ +.-..+.+....  .-+.+||+-|
T Consensus        23 ~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~  102 (462)
T 2ece_A           23 PPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPG  102 (462)
T ss_dssp             CCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEB
T ss_pred             CcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEcc
Confidence            33448888887642  2234456666665  444433322111112233333311 000111111112  3356788777


Q ss_pred             ccCCCCCCCceEEEEECCCC----cEEEeecCCCC--CCCC-cceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847          100 GHYKKSSDSMIVRFIDLETN----LCGVMETSGKV--PVAR-GGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus       100 G~~~~~~~~~~~~~yd~~t~----~W~~~~~~g~~--p~~r-~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ..+      +.++++|..++    +-.........  +.+. .-|.+.+ -++ |||-.--+..+...+.+..+|..|.+
T Consensus       103 l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A          103 LRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             TTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             CCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            653      44999999876    22222100000  0111 1233333 345 77642111122235789999999876


Q ss_pred             eEEeeecCCCCCCCccceEEEEc-CcEEEEEc---------CCCCC----CCCCcEEEEECCCCceEe-cccCCCCCCcC
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHA-NRYLIVFG---------GCSHS----IFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR  236 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~G---------G~~~~----~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r  236 (499)
                      -..--..+..|.. ..+.+-... .+.+|+--         |....    ...+.|++||+.+.+-.. +.....-..||
T Consensus       176 v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~  254 (462)
T 2ece_A          176 PLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL  254 (462)
T ss_dssp             EEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred             EEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence            4332222222211 122222222 34333331         22211    346889999998764222 11100000111


Q ss_pred             cccEEEEE---CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccC--CCC-----CCCCC------CCCceEEEEEcCc
Q 010847          237 AGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV--KGR-----NPLAS------EGLSVCSAIIEGE  300 (499)
Q Consensus       237 ~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~--~~~-----~p~~~------~~~~~~~~~~~~~  300 (499)
                        |....+   +..+||..-.+.....+.+++|....+.|..+...  +..     .|...      ........+..++
T Consensus       255 --~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          255 --ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             --EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             --eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence              111111   33566665433333334566555545777654321  110     01000      1122223333444


Q ss_pred             eEEEEEcCCCCCCCceEEEEECC
Q 010847          301 HHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       301 ~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      .+|||---    ..+.+.+||+.
T Consensus       333 rfLYVSnr----g~d~VavfdV~  351 (462)
T 2ece_A          333 KFLYLSLW----GIGEVRQYDIS  351 (462)
T ss_dssp             CEEEEEET----TTTEEEEEECS
T ss_pred             CEEEEEeC----CCCEEEEEEec
Confidence            67776432    23589999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=92.04  E-value=3.8  Score=46.10  Aligned_cols=189  Identities=14%  Similarity=0.116  Sum_probs=91.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ++..++.|+.++      .+.+||..++......   ..........+..-+++.++.||.+      ..+.+||+.+..
T Consensus       972 ~g~~l~~g~~~g------~i~i~d~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~d------g~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          972 HLEYVAFGDEDG------AIKIIELPNNRVFSSG---VGHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGD 1036 (1249)
T ss_dssp             TSSEEEEEETTS------CCEEEETTTTSCEEEC---CCCSSCCCCEEECSSSSCEEEECSS------SBEEEEETTTTE
T ss_pred             CCCEEEEEcCCC------CEEEEEcCCCceeeec---ccCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCc
Confidence            455666666432      3888898877643332   1111111111222245666666653      358999999887


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV  251 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~  251 (499)
                      ...+..     ....-.++....++. ++.|+.+     ..+.+||+.++.-...-. +  ........+..-++.+++.
T Consensus      1037 ~~~~~~-----~~~~v~~~~~~~~~~-l~~~~~d-----g~v~vwd~~~~~~~~~~~-~--~~~~v~~~~~s~d~~~l~s 1102 (1249)
T 3sfz_A         1037 YVFLQA-----HQETVKDFRLLQDSR-LLSWSFD-----GTVKVWNVITGRIERDFT-C--HQGTVLSCAISSDATKFSS 1102 (1249)
T ss_dssp             EECCBC-----CSSCEEEEEECSSSE-EEEEESS-----SEEEEEETTTTCCCEEEE-C--CSSCCCCEEECSSSSSCEE
T ss_pred             eEEEec-----CCCcEEEEEEcCCCc-EEEEECC-----CcEEEEECCCCceeEEEc-c--cCCcEEEEEECCCCCEEEE
Confidence            653321     111222233334554 4555543     368899987765332110 1  1111111122224566677


Q ss_pred             eCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847          252 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  326 (499)
Q Consensus       252 GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  326 (499)
                      |+.++     .+.+||+.+..-  +..+.      .+......+....+..+++.|+.++    .+.+||+....
T Consensus      1103 ~s~d~-----~v~iwd~~~~~~--~~~l~------~h~~~v~~~~~s~dg~~lat~~~dg----~i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1103 TSADK-----TAKIWSFDLLSP--LHELK------GHNGCVRCSAFSLDGILLATGDDNG----EIRIWNVSDGQ 1160 (1249)
T ss_dssp             ECCSS-----CCCEECSSSSSC--SBCCC------CCSSCEEEEEECSSSSEEEEEETTS----CCCEEESSSSC
T ss_pred             EcCCC-----cEEEEECCCcce--eeeec------cCCCcEEEEEECCCCCEEEEEeCCC----EEEEEECCCCc
Confidence            76543     356777665431  11111      1112223333433334566677655    46778876543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=91.94  E-value=7.3  Score=35.58  Aligned_cols=196  Identities=8%  Similarity=-0.052  Sum_probs=95.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||++.-.     ...++.||+.++........                  .+.. +++.. ++.+|+..        ..
T Consensus        26 ~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------------------~~~~-~i~~~~dG~l~v~~--------~~   73 (297)
T 3g4e_A           26 SLLFVDIP-----AKKVCRWDSFTKQVQRVTMD------------------APVS-SVALRQSGGYVATI--------GT   73 (297)
T ss_dssp             EEEEEETT-----TTEEEEEETTTCCEEEEECS------------------SCEE-EEEEBTTSSEEEEE--------TT
T ss_pred             EEEEEECC-----CCEEEEEECCCCcEEEEeCC------------------CceE-EEEECCCCCEEEEE--------CC
Confidence            67766542     24689999998876544321                  1212 22222 45666643        13


Q ss_pred             eEEEEECCCCcEEEeecCCC-CCCCCcceEEEEECCEEEEEcCcCCC------CCccCcEEEEECCCCeeEEeeecCCCC
Q 010847          110 IVRFIDLETNLCGVMETSGK-VPVARGGHSVTLVGSRLIIFGGEDRS------RKLLNDVHFLDLETMTWDAVEVTQTPP  182 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~-~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~p  182 (499)
                      .+++||+.+++++.+..... .+..+....++.-+++||+-. ....      ......++.+++. .+...+...... 
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~-  150 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI-  150 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB-
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeecccc-
Confidence            49999999999887763211 121222222222256777632 1111      0123468888875 333333221011 


Q ss_pred             CCCccceEEEEc-CcEEEEEcCCCCCCCCCcEEEEEC--CCCceEecccCCCCCC-cCcccEEEEE-CCEEEEEeCCCCC
Q 010847          183 APRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEIKGDLVT-GRAGHAGITI-DENWYIVGGGDNN  257 (499)
Q Consensus       183 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~l~v~GG~~~~  257 (499)
                          -..++... ++.+|+....     .+.|++||+  .++.......-...+. ...-..++.- ++.+||.....  
T Consensus       151 ----pngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~--  219 (297)
T 3g4e_A          151 ----SNGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG--  219 (297)
T ss_dssp             ----EEEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT--
T ss_pred             ----ccceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC--
Confidence                12233333 3457776532     256888886  4554332110001111 1111233332 45787764311  


Q ss_pred             CCcceEEEEECCCCceEE
Q 010847          258 NGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       258 ~~~~~~~~~d~~~~~W~~  275 (499)
                         ..+++||+.++....
T Consensus       220 ---~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          220 ---GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ---TEEEEECTTTCCEEE
T ss_pred             ---CEEEEEcCCCceEEE
Confidence               258999998776543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=91.85  E-value=1  Score=46.00  Aligned_cols=13  Identities=31%  Similarity=0.411  Sum_probs=5.2

Q ss_pred             hhccchHHHHHHH
Q 010847          414 VNSTHSELSKELS  426 (499)
Q Consensus       414 ~~~~~~~~~~~~~  426 (499)
                      ....+.+.+++++
T Consensus       478 ~d~~l~~~~k~~~  490 (592)
T 1f5n_A          478 TDQTLTEKEKEIE  490 (592)
T ss_dssp             HCSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.80  E-value=8.1  Score=35.83  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=36.1

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.++.-.....  ...........+.+  ++..++.|+.+      ..+.+||+.+
T Consensus       127 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  192 (366)
T 3k26_A          127 DPNLLLSVSKDH------ALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINS  192 (366)
T ss_dssp             CTTEEEEEETTS------CEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCS
T ss_pred             CCCEEEEEeCCC------eEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCC
Confidence            456777776533      39999998876544321  11111222223333  34566666643      3588888876


Q ss_pred             C
Q 010847          170 M  170 (499)
Q Consensus       170 ~  170 (499)
                      .
T Consensus       193 ~  193 (366)
T 3k26_A          193 K  193 (366)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=91.74  E-value=2.1  Score=31.52  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010847          456 SQTIENEVQILRQQKSAFEQEMERATSVQ  484 (499)
Q Consensus       456 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~q  484 (499)
                      +...+.....+..++..++..+.+++++.
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555566666666666666555544

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.74  E-value=1  Score=35.86  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=8.7

Q ss_pred             hhhhHHHHHHhhccchHHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKEL  425 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~  425 (499)
                      +..|+.+++..+.+...++..+
T Consensus        45 iq~L~~el~~l~~~~~~LE~~l   66 (129)
T 3tnu_B           45 IQRLRAEIDNVKKQCANLQNAI   66 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHH
Confidence            3334444444443333333333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=91.73  E-value=0.68  Score=32.95  Aligned_cols=10  Identities=30%  Similarity=0.046  Sum_probs=3.8

Q ss_pred             HHHHHHHhHH
Q 010847          462 EVQILRQQKS  471 (499)
Q Consensus       462 e~~~~~~~~~  471 (499)
                      |+..+.+++.
T Consensus        49 Elk~l~e~Ld   58 (79)
T 3cvf_A           49 EVGRAAQLLD   58 (79)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            3333333333

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=91.71  E-value=6.5  Score=36.39  Aligned_cols=153  Identities=12%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C----CEEEEEcCcCCCCCccCcEEEEEC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G----SRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~----~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ..+++.|+....   ...+.+||+.++........   .... ...++.+ .    +.+++.|+.+      ..+.+||+
T Consensus        31 ~~l~~~~s~~~~---d~~v~iw~~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~   97 (357)
T 3i2n_A           31 AKFVTMGNFARG---TGVIQLYEIQHGDLKLLREI---EKAK-PIKCGTFGATSLQQRYLATGDFG------GNLHIWNL   97 (357)
T ss_dssp             SEEEEEEC--CC---CEEEEEEEECSSSEEEEEEE---EESS-CEEEEECTTCCTTTCCEEEEETT------SCEEEECT
T ss_pred             ceEEEecCccCC---CcEEEEEeCCCCcccceeee---cccC-cEEEEEEcCCCCCCceEEEecCC------CeEEEEeC
Confidence            366667654211   23588999988876655321   1111 1122222 2    3666666643      35888888


Q ss_pred             CCCe--eEEeeecCCCCCCCccceEEE------EcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCc
Q 010847          168 ETMT--WDAVEVTQTPPAPRYDHSAAL------HANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRA  237 (499)
Q Consensus       168 ~t~~--W~~~~~~~~~p~~r~~~~~~~------~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~  237 (499)
                      .+..  -..+..   ...+.  .++..      ..++.+++.|+.+     ..+.+||+.+..  ...+.. ......+.
T Consensus        98 ~~~~~~~~~~~~---~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~-~~~~~~~~  166 (357)
T 3i2n_A           98 EAPEMPVYSVKG---HKEII--NAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEP-VQGENKRD  166 (357)
T ss_dssp             TSCSSCSEEECC---CSSCE--EEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECC-CTTSCCCC
T ss_pred             CCCCccEEEEEe---cccce--EEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccc-cCCCCCCc
Confidence            7664  222211   00111  11111      1234466666654     358899987764  222211 01111112


Q ss_pred             ccEEEE-----ECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          238 GHAGIT-----IDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       238 ~~~~~~-----~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      -.+++.     -++.+++.|+.++     .+.+||+.+..-.
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~  203 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALR  203 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCcee
Confidence            222221     2456667666332     5889998887643

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.70  E-value=2.1  Score=30.52  Aligned_cols=15  Identities=20%  Similarity=0.494  Sum_probs=5.6

Q ss_pred             hHHHHHHhhccchHH
Q 010847          407 FREKIDEVNSTHSEL  421 (499)
Q Consensus       407 l~~~~~~~~~~~~~~  421 (499)
                      |+.++++++.++..+
T Consensus        25 LqmEieELKekN~~L   39 (81)
T 2jee_A           25 LQMEIEELKEKNNSL   39 (81)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.69  E-value=8.3  Score=35.73  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEE---ECCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK---WGTKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      .+.+||+.++.........                  ..-.+++.   -++.+++.|+.+      ..+.+||+.++.-.
T Consensus       109 ~v~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~  164 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHD------------------APVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPM  164 (368)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCS
T ss_pred             cEEEEEcCCCCceeecccc------------------CceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEE
Confidence            5889999988765543221                  11112222   246777777753      34889998876532


Q ss_pred             EeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847          123 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus       123 ~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ..-   ..+  ....++....+.+++.++       ...+.+||+....
T Consensus       165 ~~~---~~~--~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~  201 (368)
T 3mmy_A          165 MVL---QLP--ERCYCADVIYPMAVVATA-------ERGLIVYQLENQP  201 (368)
T ss_dssp             EEE---ECS--SCEEEEEEETTEEEEEEG-------GGCEEEEECSSSC
T ss_pred             EEE---ecC--CCceEEEecCCeeEEEeC-------CCcEEEEEecccc
Confidence            221   111  123334444555554433       3357888886653

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=91.57  E-value=1.9  Score=34.19  Aligned_cols=57  Identities=14%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-------~~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      ++..-..+...++....++.++.+.+.+|.++.       +++.+++++.....+..+.++.+.
T Consensus        64 ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~  127 (158)
T 3tul_A           64 YEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT  127 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334455556777777777888888887777       778888888777776666665443

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=91.53  E-value=1.5  Score=30.59  Aligned_cols=10  Identities=10%  Similarity=0.122  Sum_probs=3.7

Q ss_pred             HHHHHHHhHH
Q 010847          462 EVQILRQQKS  471 (499)
Q Consensus       462 e~~~~~~~~~  471 (499)
                      ++..+.+++.
T Consensus        43 Elk~~~e~Ld   52 (72)
T 3cve_A           43 NLKTLLEILD   52 (72)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            3333333333

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=91.53  E-value=0.54  Score=35.15  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=13.4

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQL  432 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  432 (499)
                      ...++.+++.++.+...+.+++..++.++
T Consensus        14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           14 ADTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555444444444444333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=91.48  E-value=7.2  Score=34.60  Aligned_cols=187  Identities=10%  Similarity=0.011  Sum_probs=90.6

Q ss_pred             CCEEEE-EcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLI-LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv-~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.||+ ....      ...+.+||+.+......... ..   ..-++++.. ++.||+...       .+.++.||+.+
T Consensus        34 ~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~~~~g~l~v~~~-------~~~i~~~d~~~   96 (270)
T 1rwi_B           34 AGNVYVTSEGM------YGRVVKLATGSTGTTVLPFN-GL---YQPQGLAVDGAGTVYVTDF-------NNRVVTLAAGS   96 (270)
T ss_dssp             TCCEEEEECSS------SCEEEEECC-----EECCCC-SC---CSCCCEEECTTCCEEEEET-------TTEEEEECTTC
T ss_pred             CCCEEEEccCC------CCcEEEecCCCcccceEeeC-Cc---CCcceeEECCCCCEEEEcC-------CCEEEEEeCCC
Confidence            467888 4322      23488999877665443211 11   111233333 457888754       13589999887


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  248 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  248 (499)
                      .....+...+    ...-+.++...++.+|+....     .+.+++|+..+........ ...   ..-.+++.. ++.+
T Consensus        97 ~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l  163 (270)
T 1rwi_B           97 NNQTVLPFDG----LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPF-TGL---NDPDGVAVDNSGNV  163 (270)
T ss_dssp             SCCEECCCCS----CSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCC-CSC---CSCCCEEECTTCCE
T ss_pred             ceEeeeecCC----cCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeecc-ccC---CCceeEEEeCCCCE
Confidence            6554332111    111223333335667776432     2468888766554433211 111   111233333 4678


Q ss_pred             EEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          249 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       249 ~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      |+....     ...+.+||+.+..-.......       . .....+.++.+..||+....+    +.+++|++...
T Consensus       164 ~v~~~~-----~~~i~~~~~~~~~~~~~~~~~-------~-~~p~~i~~d~~g~l~v~~~~~----~~v~~~~~~~~  223 (270)
T 1rwi_B          164 YVTDTD-----NNRVVKLEAESNNQVVLPFTD-------I-TAPWGIAVDEAGTVYVTEHNT----NQVVKLLAGST  223 (270)
T ss_dssp             EEEEGG-----GTEEEEECTTTCCEEECCCSS-------C-CSEEEEEECTTCCEEEEETTT----SCEEEECTTCS
T ss_pred             EEEECC-----CCEEEEEecCCCceEeecccC-------C-CCceEEEECCCCCEEEEECCC----CcEEEEcCCCC
Confidence            877542     236889998776543321111       0 122234444444667654332    36888887654

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=91.40  E-value=3.4  Score=31.93  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=13.5

Q ss_pred             HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010847          412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  444 (499)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (499)
                      +++++.+..-.+++-.++.++...++..++.+.
T Consensus        49 DQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~   81 (167)
T 4gkw_A           49 DQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            333333333334444444444444444444333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=91.39  E-value=2.5  Score=41.99  Aligned_cols=9  Identities=22%  Similarity=0.464  Sum_probs=5.9

Q ss_pred             EECCEEEEE
Q 010847          141 LVGSRLIIF  149 (499)
Q Consensus       141 ~~~~~lyv~  149 (499)
                      .++|++|.+
T Consensus       112 ~~dGk~Ygl  120 (471)
T 3mq9_A          112 RYNGKLIAY  120 (471)
T ss_dssp             EETTEECEE
T ss_pred             EECCEEEEE
Confidence            367777765

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=91.31  E-value=1.6  Score=32.55  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847          403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  455 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  455 (499)
                      ++.-|+..+++.++.+.+..++.++...+++.++..+..++.++.+++.+|++
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666665555555555555555555555555555555433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=91.10  E-value=3.3  Score=38.34  Aligned_cols=111  Identities=12%  Similarity=0.104  Sum_probs=57.3

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ++++++.|+.+      ..+.+||+.++....+.+   +..-...-.++.+    ++.+++.|+.+      ..+.++|+
T Consensus        24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD------RSVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYD------RKVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT------TEEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETT------SCEEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECC------CEEEEEEC
Confidence            35566677643      348888887765433321   1111111122333    25667777654      35888998


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEc-C--cEEEEEcCCCCCCCCCcEEEEECCCC-ceEe
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQ  225 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~  225 (499)
                      .+..|..+.....   .......+.+. +  +.+++.|+.+     ..+.++|+.+. .|..
T Consensus        89 ~~~~~~~~~~~~~---h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           89 ENGTWEKSHEHAG---HDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSSCCCEEEEECC---CSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEECSSSCEEE
T ss_pred             CCCcceEEEEccC---CCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEecCCCCCcce
Confidence            8877755443111   11122233332 2  4466666654     35777887665 4643

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=91.03  E-value=13  Score=36.65  Aligned_cols=143  Identities=15%  Similarity=0.130  Sum_probs=76.1

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ++++|+|-|.        ..|+||..+.......-. .+|  . --++....+++|+|-|.        ..+.||..+.+
T Consensus       158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~-gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          158 DEGILFFQGN--------RKWFWDLTTGTKKERSWP-AVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             SSEEEEEETT--------EEEEEETTTTEEEEECCT-TSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CCeEEEEecc--------cEEEEecccceeecccCC-CCC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            6788999873        389999998866543211 122  2 23455567899999763        46667665432


Q ss_pred             ------------eEEeeecC------------C---CCCCC-ccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          172 ------------WDAVEVTQ------------T---PPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       172 ------------W~~~~~~~------------~---~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                                  |-.++..|            .   .+.+. ..-+++...++.+|+|-|.       ..|++|.....+
T Consensus       218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~-------~yWR~~~~~~~~  290 (460)
T 1qhu_A          218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS-------HYWRLDTNRDGW  290 (460)
T ss_dssp             CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT-------EEEECTTGGGCC
T ss_pred             ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC-------EEEEEecCCCCc
Confidence                        21111000            0   01111 1223333245668998873       466666543332


Q ss_pred             EecccCC---CCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          224 SQPEIKG---DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       224 ~~~~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      ....+..   .+|..  --++...++.+|+|=|       +.+|+|+...
T Consensus       291 ~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~  331 (460)
T 1qhu_A          291 HSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKG  331 (460)
T ss_dssp             CCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSB
T ss_pred             CccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCC
Confidence            2211111   12322  3345556789999966       2688888653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=90.95  E-value=9.8  Score=35.21  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE---ECCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL---VGSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++..++.|+.+      ..+.+||+.++......   ....+  -.++..   .++.+++.|+.+      ..+.+||+.
T Consensus        97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~---~~~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~  159 (368)
T 3mmy_A           97 DGSKVFTASCD------KTAKMWDLSSNQAIQIA---QHDAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTR  159 (368)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEE---ECSSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSS
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCCceeec---cccCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECC
Confidence            45566666543      34999999988765543   11111  122222   245777777754      358899987


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      +.+-...-.   .  +....++. .....+++.++ +     +.+.+||+....
T Consensus       160 ~~~~~~~~~---~--~~~~~~~~-~~~~~~~~~~~-~-----~~i~~~~~~~~~  201 (368)
T 3mmy_A          160 SSNPMMVLQ---L--PERCYCAD-VIYPMAVVATA-E-----RGLIVYQLENQP  201 (368)
T ss_dssp             CSSCSEEEE---C--SSCEEEEE-EETTEEEEEEG-G-----GCEEEEECSSSC
T ss_pred             CCcEEEEEe---c--CCCceEEE-ecCCeeEEEeC-C-----CcEEEEEecccc
Confidence            765322211   1  11222222 23443444333 2     358888886653

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=90.89  E-value=1.1  Score=32.73  Aligned_cols=31  Identities=10%  Similarity=0.213  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhh
Q 010847          385 AIKEDKRVLELSLTEVRTENSRFREKIDEVN  415 (499)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  415 (499)
                      .|+......++.+.....++.+|++++...+
T Consensus         6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~   36 (94)
T 3jsv_C            6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHK   36 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3444444444445444445555555444443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=90.89  E-value=3.9  Score=31.23  Aligned_cols=24  Identities=29%  Similarity=0.158  Sum_probs=11.8

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          429 QGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      ..+.+.+.++.+.-|+.+.++++.
T Consensus        44 k~qV~~L~~~~q~sE~~L~~Lqq~   67 (112)
T 1x79_B           44 SHQISALVLRAQASEILLEELQQG   67 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.68  E-value=11  Score=35.43  Aligned_cols=151  Identities=9%  Similarity=-0.016  Sum_probs=74.4

Q ss_pred             cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-Cc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcC
Q 010847          159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  236 (499)
Q Consensus       159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  236 (499)
                      ...++.+|+.+.+...+...     ........... ++ .|++............|+.+|+.+..+..+..    ..+.
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE----HAEG  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred             cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence            45789999998887666531     11122222333 33 34444321111223579999998887776532    1111


Q ss_pred             cccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcCC----
Q 010847          237 AGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGY----  309 (499)
Q Consensus       237 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~----  309 (499)
                      .......+  +++.+++...........++++|+.++....+...+.        .. ..... ++. +++..++.    
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--------~~-~~~s~~dg~-~l~~~~~~~p~~  307 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--------CS-HLMSNFDGS-LMVGDGCDAPVD  307 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--------EE-EEEECSSSS-EEEEEECCC---
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--------CC-CCccCCCCc-eEEEecCCccee
Confidence            11111222  3443333332222212349999999888776654321        12 22233 443 44432221    


Q ss_pred             -------CCCCCceEEEEECCCCCCC
Q 010847          310 -------NGKYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       310 -------~~~~~~~~~~~~~~~~~W~  328 (499)
                             .......++++|+......
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBCC
T ss_pred             eccccccccCCCCcEEEEecccCceE
Confidence                   1123468999998766543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=90.68  E-value=4.1  Score=37.42  Aligned_cols=92  Identities=18%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             cEEEEECCCCeeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc
Q 010847          161 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  239 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  239 (499)
                      .++.+|+.+.+-..+...   +....-..++...+ +++|+.        .+.+++||+.+.+-...-..+     ....
T Consensus       220 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-----~~~~  283 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-----HSYY  283 (337)
T ss_dssp             EEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-----SCCC
T ss_pred             ceEEEeCCCCCceEeecC---CCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-----Ccee
Confidence            689999988875533321   11111222333334 445544        157999999887643321111     1122


Q ss_pred             EEEEE-CCE-EEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          240 AGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       240 ~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      +++.. +++ +|+ ++.     .+.+.+||+.+..-.
T Consensus       284 ~~~~s~dg~~l~~-~~~-----~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          284 SVNVSTDGSTVWL-GGA-----LGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEECTTSCEEEE-ESB-----SSEEEEEETTTCCEE
T ss_pred             eEEECCCCCEEEE-EcC-----CCcEEEEECcCCcEE
Confidence            33333 334 555 432     246899999877543

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=90.63  E-value=0.92  Score=35.43  Aligned_cols=7  Identities=14%  Similarity=0.472  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 010847          383 IDAIKED  389 (499)
Q Consensus       383 ~~~l~~~  389 (499)
                      |+.|+.+
T Consensus        17 Ie~Lkre   23 (120)
T 3i00_A           17 IERLYRE   23 (120)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.60  E-value=11  Score=35.09  Aligned_cols=191  Identities=13%  Similarity=0.059  Sum_probs=92.8

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+++.||.++     .+.+||+.++.-...-.....     .    .....+.  ..++..++.|.++-.       ...
T Consensus        49 ~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~~~~v-----~----~~~~~~~--~~s~s~D~~i~~w~~-------~~~  105 (343)
T 3lrv_A           49 WVCMCRCEDG-----ALHFTQLKDSKTITTITTPNP-----R----TGGEHPA--IISRGPCNRLLLLYP-------GNQ  105 (343)
T ss_dssp             EEEEEEEETT-----EEEEEEESSSSCEEEEEEECC-----C----TTCCCCS--EEEECSTTEEEEEET-------TTE
T ss_pred             CEEEEECCCC-----cEEEEECCCCcEEEEEecCCc-----e----eeeeCCc--eEEecCCCeEEEEEc-------cCc
Confidence            6777777533     478888887754322111100     0    0001111  222223456666643       224


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  186 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~  186 (499)
                      +..||..+..-.....   .+... ...++.+    ++.+++.|+.+      ..+.+||+.+.+-.....   ......
T Consensus       106 ~~~~~~~~~~~~~~~~---~~~~~-~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~---~~~~~~  172 (343)
T 3lrv_A          106 ITILDSKTNKVLREIE---VDSAN-EIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIVHS---AKSDVE  172 (343)
T ss_dssp             EEEEETTTCCEEEEEE---CCCSS-CEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEEEC---CCSSCC
T ss_pred             eEEeecCCcceeEEee---cCCCC-CEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEEEe---cCCCCc
Confidence            7777877776322221   11111 1112222    45567767754      358999998877643331   111212


Q ss_pred             cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE--ecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceE
Q 010847          187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET  263 (499)
Q Consensus       187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~  263 (499)
                      -.+++...++.+++.|+.+     ..|.+||+.+..-.  .+.  .  .....-.+++.. ++..++.|+ ++     .+
T Consensus       173 i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~--~--~h~~~v~~l~fs~~g~~l~s~~-~~-----~v  237 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQASSRFP--V--DEEAKIKEVKFADNGYWMVVEC-DQ-----TV  237 (343)
T ss_dssp             CCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSCCEECC--C--CTTSCEEEEEECTTSSEEEEEE-SS-----BE
T ss_pred             eEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCCccEEe--c--cCCCCEEEEEEeCCCCEEEEEe-CC-----eE
Confidence            2333444466677777754     36999999876533  221  1  011111122222 345666665 22     57


Q ss_pred             EEEECCCCc
Q 010847          264 IVLNMTKLA  272 (499)
Q Consensus       264 ~~~d~~~~~  272 (499)
                      .+||+.+..
T Consensus       238 ~iwd~~~~~  246 (343)
T 3lrv_A          238 VCFDLRKDV  246 (343)
T ss_dssp             EEEETTSST
T ss_pred             EEEEcCCCC
Confidence            888987653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=90.59  E-value=1.8  Score=44.25  Aligned_cols=13  Identities=8%  Similarity=0.202  Sum_probs=6.2

Q ss_pred             HHHHHHHHhhccc
Q 010847          472 AFEQEMERATSVQ  484 (499)
Q Consensus       472 ~~~~~~~~~~~~q  484 (499)
                      .+..|.++++.+.
T Consensus       571 ~~~~ei~~l~~~~  583 (592)
T 1f5n_A          571 IMKNEIQDLQTKM  583 (592)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            4455555444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=90.58  E-value=2.2  Score=31.27  Aligned_cols=25  Identities=4%  Similarity=0.219  Sum_probs=10.3

Q ss_pred             hhHHHHHHhhccchHHHHHHHHHHH
Q 010847          406 RFREKIDEVNSTHSELSKELSSVQG  430 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~~~~~  430 (499)
                      .|...+...++-+......+.++++
T Consensus         6 ~L~~~L~~aEeaL~~kq~~id~lke   30 (94)
T 3jsv_C            6 DLRQQLQQAEEALVAKQELIDKLKE   30 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444444444444444333333333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.48  E-value=12  Score=35.31  Aligned_cols=187  Identities=12%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      .+++.|+.+     ..+.+||+.++..........               ....-.+++..  ++.+++.|+.+      
T Consensus        87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~l~s~~~d------  140 (383)
T 3ei3_B           87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMG---------------PGDAITGMKFNQFNTNQLFVSSIR------  140 (383)
T ss_dssp             TEEEEEEBT-----SCEEEEETTSTTCEEEECCCS---------------TTCBEEEEEEETTEEEEEEEEETT------
T ss_pred             CEEEEEcCC-----CeEEEEeCCCcccceeeecCC---------------cCCceeEEEeCCCCCCEEEEEeCC------
Confidence            455666542     358899999887765543211               01111223333  34666666643      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..+.++|+.+.....+...  ......-.+++. -++.+++.|+.+      ..+.+||+....-..+..      ....
T Consensus       141 ~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~------h~~~  206 (383)
T 3ei3_B          141 GATTLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL------HKAK  206 (383)
T ss_dssp             TEEEEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC------SSSC
T ss_pred             CEEEEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc------CCCc
Confidence            3488999988766666421  111111122222 245666666643      368999985544433331      1122


Q ss_pred             ceEEEE-cCcE-EEEEcCCCCCCCCCcEEEEECCCC----ceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCC
Q 010847          188 HSAALH-ANRY-LIVFGGCSHSIFFNDLHVLDLQTN----EWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG  259 (499)
Q Consensus       188 ~~~~~~-~~~~-l~v~GG~~~~~~~~~i~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~  259 (499)
                      ...+.+ .++. +++.|+.+     ..+.+||+.+.    ......     .....-.+++..  ++.+++.|+.+    
T Consensus       207 v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~~~~~d----  272 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVD-----ATVKLWDLRNIKDKNSYIAEM-----PHEKPVNAAYFNPTDSTKLLTTDQR----  272 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETT-----SEEEEEEGGGCCSTTCEEEEE-----ECSSCEEEEEECTTTSCEEEEEESS----
T ss_pred             EEEEEECCCCCCEEEEEeCC-----CEEEEEeCCCCCcccceEEEe-----cCCCceEEEEEcCCCCCEEEEEcCC----
Confidence            223333 3333 66776654     36889998762    222210     111111122222  34666666643    


Q ss_pred             cceEEEEECCCCc
Q 010847          260 CQETIVLNMTKLA  272 (499)
Q Consensus       260 ~~~~~~~d~~~~~  272 (499)
                       ..+.+||+.+..
T Consensus       273 -~~i~iwd~~~~~  284 (383)
T 3ei3_B          273 -NEIRVYSSYDWS  284 (383)
T ss_dssp             -SEEEEEETTBTT
T ss_pred             -CcEEEEECCCCc
Confidence             257888887643

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.44  E-value=5.2  Score=32.56  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=15.0

Q ss_pred             ccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847          416 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  452 (499)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  452 (499)
                      .++.....++..+..++..++.+..+.+.....++++
T Consensus        51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~E   87 (154)
T 2ocy_A           51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE   87 (154)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444433333333333333333

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.34  E-value=5.2  Score=36.48  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=53.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC----CEEEEEcCcCCCCCccCcEEEEEC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      +++.++.|+.++      .+.+||+.+.....+.+   +..-...-.++.+.    +.+++.|+.+      ..+.++|+
T Consensus        20 ~g~~las~s~D~------~v~iw~~~~~~~~~~~~---l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS------CEEEEEBCSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEB
T ss_pred             CCCEEEEEeCCC------EEEEEecCCCCcEEEEE---EccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEc
Confidence            456667776543      38888876543322221   11101111223331    5677777654      35888999


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEc-C--cEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .+..|..+.....   .......+.+. +  +.+++.|+.+     ..+.+||+.+.
T Consensus        85 ~~~~~~~~~~~~~---h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~  133 (297)
T 2pm7_B           85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKEN  133 (297)
T ss_dssp             SSSCBCCCEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSS
T ss_pred             CCCceEEEEEeec---CCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCC
Confidence            8877754432111   11122233332 2  3356666654     35778887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=90.17  E-value=12  Score=35.04  Aligned_cols=135  Identities=12%  Similarity=0.020  Sum_probs=69.0

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCC
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  184 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~  184 (499)
                      ..+.++|+.++.-...-. + ..   ....++.+    ++.+++.|+.+      ..+.++|+.+.+....-. +    .
T Consensus       176 ~~v~lwd~~~~~~~~~~~-~-h~---~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~-~----h  239 (354)
T 2pbi_B          176 GTCALWDVESGQLLQSFH-G-HG---ADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFE-T----H  239 (354)
T ss_dssp             SEEEEEETTTCCEEEEEE-C-CS---SCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEEC-C----C
T ss_pred             CcEEEEeCCCCeEEEEEc-C-CC---CCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEec-C----C
Confidence            348888988876433221 1 11   11112222    34677777754      358999998876543321 1    1


Q ss_pred             CccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcc
Q 010847          185 RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  261 (499)
Q Consensus       185 r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  261 (499)
                      .....++.+ .++.+++.|+.+     ..+.+||+.+..-..+-  . ..........+.+  ++.+++.|+.+.     
T Consensus       240 ~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~--~-~~~~~~~~~~~~~s~~g~~l~~g~~d~-----  306 (354)
T 2pbi_B          240 ESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIY--S-KESIIFGASSVDFSLSGRLLFAGYNDY-----  306 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE--C-CTTCCSCEEEEEECTTSSEEEEEETTS-----
T ss_pred             CCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE--c-CCCcccceeEEEEeCCCCEEEEEECCC-----
Confidence            112223333 344467777754     35888998776432221  1 1111122223333  456666666432     


Q ss_pred             eEEEEECCCCc
Q 010847          262 ETIVLNMTKLA  272 (499)
Q Consensus       262 ~~~~~d~~~~~  272 (499)
                      .+.+||+.+..
T Consensus       307 ~i~vwd~~~~~  317 (354)
T 2pbi_B          307 TINVWDVLKGS  317 (354)
T ss_dssp             CEEEEETTTCS
T ss_pred             cEEEEECCCCc
Confidence            47888986654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.05  E-value=1.7  Score=34.66  Aligned_cols=13  Identities=23%  Similarity=0.373  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhHH
Q 010847          459 IENEVQILRQQKS  471 (499)
Q Consensus       459 ~~~e~~~~~~~~~  471 (499)
                      ++.++.++.++.+
T Consensus        87 lE~eL~~~r~e~~   99 (129)
T 3tnu_B           87 LEEALQKAKQDMA   99 (129)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH
Confidence            3344443333333

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=89.93  E-value=13  Score=35.07  Aligned_cols=119  Identities=11%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCC---
Q 010847           30 KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK---  104 (499)
Q Consensus        30 ~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~---  104 (499)
                      ..+|+.-...+...-+.+++||+.+++-...-+.                  .... .++..  +..+|+..-....   
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~------------------g~~p-~i~~spdg~~lyv~~~~~~~~~~   76 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT------------------AFNG-HVQVSNDGKKIYTMTTYHERITR   76 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC------------------CEEE-EEEECTTSSEEEEEEEEETTSSS
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecC------------------CCCC-ceEECCCCCEEEEEEeccccccc
Confidence            3678775422222235799999998875432211                  1111 22222  5678887522111   


Q ss_pred             CCCCceEEEEECCCCcEE-EeecCCCCC-CCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCee
Q 010847          105 SSDSMIVRFIDLETNLCG-VMETSGKVP-VARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  172 (499)
Q Consensus       105 ~~~~~~~~~yd~~t~~W~-~~~~~g~~p-~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W  172 (499)
                      ....+.+.+||+.+.+-. .++..+... ....-+.++.  -+..||+....     ..+.+.+||+.+++-
T Consensus        77 g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           77 GKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----PATSIGIVDVAKGDY  143 (361)
T ss_dssp             SCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----SSEEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----CCCeEEEEECCCCcE
Confidence            111356999999886543 332110000 0111122222  24467776321     135789999988754

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.93  E-value=6  Score=32.17  Aligned_cols=13  Identities=8%  Similarity=0.184  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 010847          422 SKELSSVQGQLVA  434 (499)
Q Consensus       422 ~~~~~~~~~~~~~  434 (499)
                      +++...+.++++.
T Consensus        78 E~~~~~ie~ElEe   90 (154)
T 2ocy_A           78 EEEADKLNKEVED   90 (154)
T ss_dssp             HTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.91  E-value=2.9  Score=40.79  Aligned_cols=10  Identities=40%  Similarity=0.368  Sum_probs=3.9

Q ss_pred             hhhhhHHHHH
Q 010847          436 RSRCFKLEAQ  445 (499)
Q Consensus       436 ~~~~~~~~~~  445 (499)
                      +++++.|+++
T Consensus       116 RRrIqyLKek  125 (562)
T 3ghg_A          116 RSRIEVLKRK  125 (562)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333434333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=89.59  E-value=0.27  Score=50.21  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=5.6

Q ss_pred             eEEEEECCC
Q 010847          262 ETIVLNMTK  270 (499)
Q Consensus       262 ~~~~~d~~~  270 (499)
                      -+.+|+..+
T Consensus       224 GI~v~~~~~  232 (575)
T 2i1j_A          224 GLNIYEKDD  232 (575)
T ss_dssp             EEEEEETTC
T ss_pred             eeEEEeCCC
Confidence            366777654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=89.55  E-value=12  Score=34.29  Aligned_cols=144  Identities=10%  Similarity=0.029  Sum_probs=69.3

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCc----EEEeecCCCCCCCCcceEEEE-ECCE-EEEEcCcCCCCCccCcEEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNL----CGVMETSGKVPVARGGHSVTL-VGSR-LIIFGGEDRSRKLLNDVHFL  165 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~g~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~v~~y  165 (499)
                      ++.+++.|+.+      ..+.+||+.++.    .....   ...  ..-.+++. -++. +++.|+.+      ..+.+|
T Consensus        22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~---~~~--~~v~~~~~~~~~~~~l~~~~~d------g~i~~w   84 (342)
T 1yfq_A           22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSL---RYK--HPLLCCNFIDNTDLQIYVGTVQ------GEILKV   84 (342)
T ss_dssp             GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEE---ECS--SCEEEEEEEESSSEEEEEEETT------SCEEEE
T ss_pred             CCCEEEEEcCC------CeEEEEEeCCCCccccceeee---ecC--CceEEEEECCCCCcEEEEEcCC------CeEEEE
Confidence            34455566532      347888877665    32222   111  11122222 2566 66777643      368999


Q ss_pred             EC-CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc-------eEecccCCCCCCcCc
Q 010847          166 DL-ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQPEIKGDLVTGRA  237 (499)
Q Consensus       166 d~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-------W~~~~~~~~~p~~r~  237 (499)
                      |+ .+.....+..  . +....-.++....++ +++.|+.+     +.+.+||+.+..       ...+   .....+..
T Consensus        85 d~~~~~~~~~~~~--~-~~~~~v~~l~~~~~~-~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~  152 (342)
T 1yfq_A           85 DLIGSPSFQALTN--N-EANLGICRICKYGDD-KLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNS---NNTKVKNK  152 (342)
T ss_dssp             CSSSSSSEEECBS--C-CCCSCEEEEEEETTT-EEEEEETT-----SEEEEECHHHHTTBCEEEEESCS---SSSSSCCC
T ss_pred             EeccCCceEeccc--c-CCCCceEEEEeCCCC-EEEEEcCC-----CeEEEEcccccccccccccCCee---eEEeeCCc
Confidence            99 8876644431  0 011111223333344 56666654     357888765400       1111   11112222


Q ss_pred             ccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          238 GHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       238 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      -.+++...+. +++|+.+     ..+.+||+.+
T Consensus       153 v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~  179 (342)
T 1yfq_A          153 IFTMDTNSSR-LIVGMNN-----SQVQWFRLPL  179 (342)
T ss_dssp             EEEEEECSSE-EEEEEST-----TEEEEEESSC
T ss_pred             eEEEEecCCc-EEEEeCC-----CeEEEEECCc
Confidence            2233444555 5555433     2588899877

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=89.51  E-value=5.8  Score=37.77  Aligned_cols=133  Identities=16%  Similarity=0.232  Sum_probs=78.9

Q ss_pred             ccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEECCEEEEEcCcC-------
Q 010847           83 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG--HSVTLVGSRLIIFGGED-------  153 (499)
Q Consensus        83 r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~lyv~GG~~-------  153 (499)
                      .+..|+-.+++.||+.--.......-+++.+.+..-..|+.+.    .|.....  .-.+.+++.||+||-.-       
T Consensus       339 AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~  414 (670)
T 3ju4_A          339 ASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEA  414 (670)
T ss_dssp             EEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSST
T ss_pred             cccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee----ccccccccCCCcceeCCEEEEEecccccccccc
Confidence            3445666789999988544433333567888888889999995    4433333  23567899999998532       


Q ss_pred             ---CCCC--ccCcEE--EEEC-----CCCeeEEeee---cCCCCCCCccceEEEEcCcEE-EEEcCCCC-----------
Q 010847          154 ---RSRK--LLNDVH--FLDL-----ETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCSH-----------  206 (499)
Q Consensus       154 ---~~~~--~~~~v~--~yd~-----~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~~-----------  206 (499)
                         .++-  .....+  ..++     ..-.|..+..   .|.......+...+++.|+.| |||||-+.           
T Consensus       415 G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~  494 (670)
T 3ju4_A          415 GAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSA  494 (670)
T ss_dssp             TCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTT
T ss_pred             CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccc
Confidence               1110  011122  2233     3346766653   244444555556666767755 78998541           


Q ss_pred             ------CCCCCcEEEEECC
Q 010847          207 ------SIFFNDLHVLDLQ  219 (499)
Q Consensus       207 ------~~~~~~i~~~d~~  219 (499)
                            .....++|+|.+.
T Consensus       495 k~~~~~~Ghp~dlY~~ri~  513 (670)
T 3ju4_A          495 KDPFKSDGHPSDLYCYKMK  513 (670)
T ss_dssp             CCTTSTTCCCCEEEEEEEE
T ss_pred             cCccccCCCCcceEEEEEE
Confidence                  1235578888653

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=89.43  E-value=0.82  Score=33.53  Aligned_cols=49  Identities=6%  Similarity=0.139  Sum_probs=26.5

Q ss_pred             hhhhhHHHHHHhhccch-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHS-ELSKELSSVQGQLVAERSRCFKLEAQIAELQK  451 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  451 (499)
                      +...+..+....+.+.. +.+.++.+.-++++..+..+.+||.....+++
T Consensus        22 Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq   71 (92)
T 3vp9_A           22 EFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKD   71 (92)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334344444443342 56666666666677667766666666544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.36  E-value=1.3  Score=44.27  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=9.0

Q ss_pred             hhhHHHHHHhhccchHHHHHHH
Q 010847          405 SRFREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       405 ~~l~~~~~~~~~~~~~~~~~~~  426 (499)
                      .++++.+...++..++.+++++
T Consensus       370 ~~le~~~~~~~~~~~~~~~~~~  391 (487)
T 3oja_A          370 KALDEQVSNGRRAHAELDGTLQ  391 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhHH
Confidence            3344444444444444443333

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=89.31  E-value=9.9  Score=35.01  Aligned_cols=205  Identities=11%  Similarity=0.032  Sum_probs=100.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+.+...     ..+++||+.++....+....                 ...-++++.. ++++|+.+.....  ...
T Consensus        57 ~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~i~~~~dg~l~v~~~~~~~--~~~  112 (333)
T 2dg1_A           57 QLFLLDVFE-----GNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDFK--STG  112 (333)
T ss_dssp             CEEEEETTT-----CEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTSS--SCC
T ss_pred             CEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-----------------CCCcceEEECCCCcEEEEeCCCCC--CCc
Confidence            677765532     35899999999887654321                 1112233332 5678876532211  124


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      .+++||+.++....+..  .......-..++. -++++|+.............+++||+.+.+...+.....     ...
T Consensus       113 ~i~~~d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~  185 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-----VAN  185 (333)
T ss_dssp             EEEEECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-----SEE
T ss_pred             eEEEEeCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC-----ccc
Confidence            59999999887664431  1111111122222 256787754322111124578999988776665532101     112


Q ss_pred             eEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCC--ceEeccc--CCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcce
Q 010847          189 SAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEI--KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       189 ~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~--~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~  262 (499)
                      .++...+ +.+|+....     .+.+++||+.+.  ....+..  ....+....-..++.. ++.+||....     ...
T Consensus       186 ~i~~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~  255 (333)
T 2dg1_A          186 GIALSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGR  255 (333)
T ss_dssp             EEEECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTE
T ss_pred             ceEECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCE
Confidence            2333334 357765422     246899998542  2322110  0001111111122222 4567776432     135


Q ss_pred             EEEEECCCCceEEe
Q 010847          263 TIVLNMTKLAWSIL  276 (499)
Q Consensus       263 ~~~~d~~~~~W~~l  276 (499)
                      +.+||+....-..+
T Consensus       256 v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          256 VLVFNKRGYPIGQI  269 (333)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            88899865443333

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=89.16  E-value=3.7  Score=37.06  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=42.9

Q ss_pred             HHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 010847          399 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC----FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE  474 (499)
Q Consensus       399 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~  474 (499)
                      ..+++.++|+.+++++....-.|.+-    +..+..+++.+    .+-+.-...+++.|.+..++..+..++.+++++++
T Consensus        21 ~lr~~~eql~~~i~~L~~~ap~W~~a----q~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le   96 (302)
T 3ibp_A           21 ALRQEQEQLQSRIQSLMQRAPVWLAA----QNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVD   96 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHChHHHHH----HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666655555555332    33344443332    22223335566666666666666667777777777


Q ss_pred             HHHHHh
Q 010847          475 QEMERA  480 (499)
Q Consensus       475 ~~~~~~  480 (499)
                      ++.+++
T Consensus        97 ~~ierL  102 (302)
T 3ibp_A           97 EEIERL  102 (302)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.15  E-value=1.5  Score=34.99  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=13.9

Q ss_pred             hccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010847          415 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  450 (499)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  450 (499)
                      +.++.+..+.++.++-+++.++.....|+..+.+.+
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e   72 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETK   72 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333444444444444444444444444444444333

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=88.92  E-value=10  Score=32.44  Aligned_cols=149  Identities=12%  Similarity=0.088  Sum_probs=81.9

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCC--CcEEEeecC---CCCCCCCcceEEEEE--CCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETS---GKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~---g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~  159 (499)
                      +++.+++++|+|=|.        -+|+++...  ........+   ..+|.. .. ++...  ++++|+|-|        
T Consensus        11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG--------   72 (195)
T 1itv_A           11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG--------   72 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET--------
T ss_pred             EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC--------
Confidence            455679999999763        288887755  233332221   124432 22 22222  578999966        


Q ss_pred             CcEEEEECCCCeeEEeeecC--CCCCC--CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccCC
Q 010847          160 NDVHFLDLETMTWDAVEVTQ--TPPAP--RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIKG  230 (499)
Q Consensus       160 ~~v~~yd~~t~~W~~~~~~~--~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~~  230 (499)
                      +..|.|+..+.  ..+....  .+|..  .-..+.. ..++.+|+|-|       +..|+||..+.+-..     +.  .
T Consensus        73 ~~yw~~~~~~~--~~Pk~i~~~G~p~~~~~iDAA~~-~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~--~  140 (195)
T 1itv_A           73 RQVWVYTGASV--LGPRRLDKLGLGADVAQVTGALR-SGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVD--R  140 (195)
T ss_dssp             TEEEEEETTEE--EEEEEGGGGTCCTTCCCCCEEEE-CSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHH--H
T ss_pred             CEEEEEcCCcc--CCCEEeeecccCCCccceeEEEE-cCCCeEEEEeC-------CEEEEEeCCcccccCCCccChh--h
Confidence            35788875432  1122211  13321  2222222 34678999977       468999987654221     11  0


Q ss_pred             CCC-CcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          231 DLV-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       231 ~~p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      .++ .|..-.++...++.+|+|-|.       ..|.||..+..
T Consensus       141 ~w~Gvp~~idaa~~~~g~~Yffkg~-------~y~~~~~~~~~  176 (195)
T 1itv_A          141 MFPGVPLDTHDVFQFREKAYFCQDR-------FYWRVSSRSEL  176 (195)
T ss_dssp             HSTTSCSSCSEEEEETTEEEEEETT-------EEEEEECCTTC
T ss_pred             cCCCCCCCCCEEEEeCCeEEEEeCC-------EEEEEECCccE
Confidence            111 122234555667899999772       58899987664

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=88.83  E-value=5.9  Score=38.75  Aligned_cols=11  Identities=9%  Similarity=0.262  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 010847          383 IDAIKEDKRVL  393 (499)
Q Consensus       383 ~~~l~~~~~~~  393 (499)
                      ++.|+....++
T Consensus       102 LqeLe~~l~~l  112 (464)
T 1m1j_B          102 LRDLKDRVAKF  112 (464)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444433333

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=88.78  E-value=2.2  Score=35.84  Aligned_cols=10  Identities=30%  Similarity=0.072  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 010847          425 LSSVQGQLVA  434 (499)
Q Consensus       425 ~~~~~~~~~~  434 (499)
                      +...+.+++.
T Consensus        94 l~akr~EL~a  103 (175)
T 3lay_A           94 LISKRYEYNA  103 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.75  E-value=2.1  Score=30.44  Aligned_cols=26  Identities=19%  Similarity=0.482  Sum_probs=11.3

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHH
Q 010847          409 EKIDEVNSTHSELSKELSSVQGQLVA  434 (499)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (499)
                      ++++..+..+.++++.++..+++++.
T Consensus        13 ~klq~~E~rN~~Le~~v~~le~~Le~   38 (79)
T 3cvf_A           13 QKVQDLETRNAELEHQLRAMERSLEE   38 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=88.66  E-value=15  Score=33.94  Aligned_cols=140  Identities=11%  Similarity=0.015  Sum_probs=68.2

Q ss_pred             ceEEEEECCCCcE-EEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCC--c-cCcEEEEECCCCeeEEeeecCCCCCC
Q 010847          109 MIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK--L-LNDVHFLDLETMTWDAVEVTQTPPAP  184 (499)
Q Consensus       109 ~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~-~~~v~~yd~~t~~W~~~~~~~~~p~~  184 (499)
                      ..++++|+.++.. ..+.   . +   ....++...+.+++.+.......  . ...++.+|  +..+..+...      
T Consensus       152 ~~l~~~d~~~~~~~~~l~---~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------  216 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFE---K-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK------  216 (347)
T ss_dssp             EEEEEEETTTTEEEEEEE---E-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE------
T ss_pred             ceEEEEECCCCeEEeeec---C-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC------
Confidence            5699999999887 6664   2 2   22233333333555553332111  2 45788888  7777766531      


Q ss_pred             CccceEEEEcCcEEEEEcCCCC--CCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcce
Q 010847          185 RYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       185 r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~  262 (499)
                       .......-+++.|++.+....  ......++.+|  ++.+..+..  ...  ..........+.+|+.+..+.   ...
T Consensus       217 -~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~--~~~~~~~~~sdg~~~~~~~~~---~~~  286 (347)
T 2gop_A          217 -VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVD--RGVGQAKIKDGKVYFTLFEEG---SVN  286 (347)
T ss_dssp             -ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCC--SEEEEEEEETTEEEEEEEETT---EEE
T ss_pred             -cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCC--cccCCccEEcCcEEEEEecCC---cEE
Confidence             111222333444444432221  12345799998  666666521  111  111111222244555554332   346


Q ss_pred             EEEEECCCCceEEe
Q 010847          263 TIVLNMTKLAWSIL  276 (499)
Q Consensus       263 ~~~~d~~~~~W~~l  276 (499)
                      +| ++  ++....+
T Consensus       287 l~-~~--~g~~~~~  297 (347)
T 2gop_A          287 LY-IW--DGEIKPI  297 (347)
T ss_dssp             EE-EE--SSSEEEE
T ss_pred             EE-Ec--CCceEEE
Confidence            77 77  3444444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=88.61  E-value=13  Score=33.27  Aligned_cols=195  Identities=9%  Similarity=0.028  Sum_probs=94.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE--CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG-HSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++.||+.+..      ...+.+||+.......+...+..+..... ..++..  ++.||+.+...     .+.+.+||..
T Consensus        40 ~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~  108 (286)
T 1q7f_A           40 QNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY  108 (286)
T ss_dssp             TCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred             CCCEEEEECC------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence            4678887543      23499999885544444322211111122 233332  56898876421     3468899954


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  247 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  247 (499)
                      ...-..+..    +....-+.++...++.+|+....     .+.+++||+.......+.......   .-.+++.. ++.
T Consensus       109 g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~---~p~~i~~~~~g~  176 (286)
T 1q7f_A          109 GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLE---FPNGVVVNDKQE  176 (286)
T ss_dssp             SCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCS---SEEEEEECSSSE
T ss_pred             CcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCccC---CcEEEEECCCCC
Confidence            433333321    11111233334345667776532     246899997655444332111111   11223333 467


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      +||....     .+.+.+||+.......+.....      . .....+.++.+..||+....++   ..+.+|+...
T Consensus       177 l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~------~-~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~~g  238 (286)
T 1q7f_A          177 IFISDNR-----AHCVKVFNYEGQYLRQIGGEGI------T-NYPIGVGINSNGEILIADNHNN---FNLTIFTQDG  238 (286)
T ss_dssp             EEEEEGG-----GTEEEEEETTCCEEEEESCTTT------S-CSEEEEEECTTCCEEEEECSSS---CEEEEECTTS
T ss_pred             EEEEECC-----CCEEEEEcCCCCEEEEEccCCc------c-CCCcEEEECCCCCEEEEeCCCC---EEEEEECCCC
Confidence            8877542     2368899986654444432110      0 1122334444345666553321   1677887643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=88.54  E-value=26  Score=36.53  Aligned_cols=148  Identities=13%  Similarity=0.044  Sum_probs=80.6

Q ss_pred             ceEEEEECCCC--cEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC---eeEEeeecCCCCC
Q 010847          109 MIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPPA  183 (499)
Q Consensus       109 ~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~~~~p~  183 (499)
                      +.++.+|+.+.  .|..+..    +.....+.....++.||+....+..   ...++.+|+.+.   .|+.+.+...  .
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~--~  329 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPERQ--Q  329 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCS--S
T ss_pred             cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCCC--C
Confidence            57999998776  6777752    2122222244567899998765432   347999998763   4887764211  1


Q ss_pred             CCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE---CCEEEEEeCCCCCCCc
Q 010847          184 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGC  260 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~  260 (499)
                      .   .. ....+++|++..-.++   ...++++|+.+.....+.    .|..... .....   ++.+++...  +....
T Consensus       330 ~---~~-~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~----~p~~~~~-~~~~~~~d~~~l~~~~s--s~~tP  395 (693)
T 3iuj_A          330 V---LT-VHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVA----LPGLGSV-SGFNGKHDDPALYFGFE--NYAQP  395 (693)
T ss_dssp             C---EE-EEEETTEEEEEEEETT---EEEEEEECTTSCEEEEEC----CSSSSEE-EECCCCTTCSCEEEEEE--CSSSC
T ss_pred             E---EE-EEEECCEEEEEEEECC---eeEEEEEECCCCeeEEee----cCCCceE-EeeecCCCCCEEEEEec--CCCCC
Confidence            1   12 3333555555432221   246899998866555542    2221111 11111   233443322  11223


Q ss_pred             ceEEEEECCCCceEEeccC
Q 010847          261 QETIVLNMTKLAWSILTSV  279 (499)
Q Consensus       261 ~~~~~~d~~~~~W~~l~~~  279 (499)
                      ..++.||+.++..+.+...
T Consensus       396 ~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          396 PTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CEEEEECTTTCCEEEEECC
T ss_pred             CEEEEEECCCCeEEEEEeC
Confidence            5789999988888776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=88.25  E-value=15  Score=33.44  Aligned_cols=63  Identities=11%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCC-------cEEEeecCCCCCCCCcceEEEEE--C--CEEEEEcCcCCCCCccCc
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETN-------LCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLND  161 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~-------~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~  161 (499)
                      +.+++.|+.++      .+.+||+.++       .|..+...   .........+.+  +  +.+++.|+.+      ..
T Consensus        71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~  135 (351)
T 3f3f_A           71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCTL---NDSKGSLYSVKFAPAHLGLKLACLGND------GI  135 (351)
T ss_dssp             CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------CE
T ss_pred             CCEEEEEcCCC------eEEEEecCCCcccccccCcceeeee---cccCCceeEEEEcCCCCCcEEEEecCC------Cc
Confidence            56777777543      3777887664       34444321   111112222223  2  5566666643      35


Q ss_pred             EEEEECCCC
Q 010847          162 VHFLDLETM  170 (499)
Q Consensus       162 v~~yd~~t~  170 (499)
                      +.+||+.+.
T Consensus       136 v~iwd~~~~  144 (351)
T 3f3f_A          136 LRLYDALEP  144 (351)
T ss_dssp             EEEEECSST
T ss_pred             EEEecCCCh
Confidence            888887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=88.20  E-value=18  Score=34.40  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCc-cceeEEEECCEEEEEcccCCC---C
Q 010847           30 KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM-SDHCMVKWGTKLLILGGHYKK---S  105 (499)
Q Consensus        30 ~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r-~~~s~~~~~~~iyv~GG~~~~---~  105 (499)
                      ..+|+.-+...+ ....+.+||+.+++-.  ...+                ... .+..+...+..+|+..-....   .
T Consensus        33 ~~~yv~~~~~~~-~~~~v~v~D~~t~~~~--~~i~----------------~g~~p~i~~spDg~~lyv~n~~~~~~~rg   93 (373)
T 2mad_H           33 RRSYINLPAHHS-AIIQQWVLDAGSGSIL--GHVN----------------GGFLPNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             CEEEEeCCcccC-CccEEEEEECCCCeEE--EEec----------------CCCCCCeEECCCCCEEEEEeccccccccC
Confidence            368887541111 1117899999987743  2221                111 133333446678887532111   1


Q ss_pred             CCCceEEEEECCCCcEEE-eecCCCC-----CCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeE
Q 010847          106 SDSMIVRFIDLETNLCGV-METSGKV-----PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD  173 (499)
Q Consensus       106 ~~~~~~~~yd~~t~~W~~-~~~~g~~-----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~  173 (499)
                      ...+.+.+||+.+.+-.. ++..+..     ..|+ +....-.+..||+..-.     ..+.+.++| .+++-.
T Consensus        94 ~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~  160 (373)
T 2mad_H           94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSD  160 (373)
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEE
Confidence            124568899998765432 2211000     1111 11111234567776321     135799999 887653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=88.00  E-value=15  Score=33.18  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  122 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  122 (499)
                      +.|.++|+.+++....-....                ......++.+  +++.++.|+.+      ..+.++|..+++-.
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRL  102 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeE
Confidence            358999999988765543221                1111223333  45677777753      34888999988654


Q ss_pred             EeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847          123 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  202 (499)
Q Consensus       123 ~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  202 (499)
                      ....   ...  ....+....+.+++.|+.+      ..+..++..+.........+.   ...........++.+++.|
T Consensus       103 ~~~~---~h~--~~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A          103 RNMT---SHS--ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             EEEE---CCS--SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEec---Ccc--ceEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcCc---cCceEEEEEcCCCCEEEEE
Confidence            3321   111  1222334445555655543      235555555443322221111   1111122222344456666


Q ss_pred             CCCCCCCCCcEEEEECCCCc
Q 010847          203 GCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~  222 (499)
                      +.+     ..+.+||+.+..
T Consensus       169 ~~d-----~~i~iwd~~~~~  183 (318)
T 4ggc_A          169 GND-----NLVNVWPSAPGE  183 (318)
T ss_dssp             ETT-----SCEEEEESSCBT
T ss_pred             ecC-----cceeEEECCCCc
Confidence            654     358888887654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.75  E-value=8.6  Score=30.96  Aligned_cols=30  Identities=10%  Similarity=0.129  Sum_probs=12.2

Q ss_pred             hhhhHHHHHHhhccchHHHHHHHHHHHHHH
Q 010847          404 NSRFREKIDEVNSTHSELSKELSSVQGQLV  433 (499)
Q Consensus       404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (499)
                      ...++.++..++..+.++.+.++.++.++.
T Consensus        77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~  106 (152)
T 3a7p_A           77 LKSKEQEIRRLKEVIALKNKNTERLNAALI  106 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=87.61  E-value=11  Score=36.60  Aligned_cols=23  Identities=0%  Similarity=0.167  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010847          458 TIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      +-+.++.++++.+.+...++.++
T Consensus        84 eY~~kl~aYe~~~~~~~k~lae~  106 (497)
T 3iox_A           84 DYPVKLKAYEDEQTSIKAALAEL  106 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666665555555543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=87.38  E-value=9  Score=31.05  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847          412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT  458 (499)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  458 (499)
                      +.......+..+.+..+...++...+|....+.++.+++.+|+.+..
T Consensus        69 eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~  115 (147)
T 2b9c_A           69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTN  115 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555566667777777777777777777777766653

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=87.04  E-value=22  Score=33.98  Aligned_cols=123  Identities=12%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             CCCCCCccceeEEEECCEEEEEcccCCCCCCCc-eEEEEE----CCCCcE-EEeecCCCCCCCCcceEEEEECCEEEEEc
Q 010847           77 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFID----LETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFG  150 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~-~~~~yd----~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyv~G  150 (499)
                      +..|....-|+.+.+++.-|.+|=.++.-.... -+..|.    .....- +.++.  ..-......|+-.+++.||+.-
T Consensus       278 ~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLtT  355 (670)
T 3ju4_A          278 GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLIT  355 (670)
T ss_dssp             CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEe
Confidence            344566788999999999999986555433111 122221    111111 22221  1122223345556799999985


Q ss_pred             CcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC
Q 010847          151 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  204 (499)
Q Consensus       151 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  204 (499)
                      -.......-+.+++-+.....|+.+....  .......-.+.++| .|||||--
T Consensus       356 Rgt~~~~~GS~L~rs~d~Gq~w~slrfp~--nvHhtnlPFakvgD-~l~mFgsE  406 (670)
T 3ju4_A          356 RGTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKVGD-DLIMFGSE  406 (670)
T ss_dssp             EESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEETT-EEEEEEEC
T ss_pred             cCcCCCCCcceeeeecccCCchhheeccc--cccccCCCcceeCC-EEEEEecc
Confidence            33333223456777777778899997521  11112222455644 59999863

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=86.97  E-value=6.3  Score=27.80  Aligned_cols=8  Identities=25%  Similarity=0.302  Sum_probs=2.9

Q ss_pred             HHHHHhHH
Q 010847          464 QILRQQKS  471 (499)
Q Consensus       464 ~~~~~~~~  471 (499)
                      ..+++++.
T Consensus        57 ~~Lq~qLe   64 (81)
T 3qh9_A           57 AQLQEQVA   64 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=86.97  E-value=24  Score=34.54  Aligned_cols=130  Identities=9%  Similarity=-0.028  Sum_probs=58.7

Q ss_pred             EEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEc----------CcCCCC---CccC
Q 010847           95 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFG----------GEDRSR---KLLN  160 (499)
Q Consensus        95 iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~G----------G~~~~~---~~~~  160 (499)
                      |||..-.+........+.++|..|+.-...-..+..|.. .+|.+. .-+.++++.-          |+....   .+.+
T Consensus       150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d  228 (462)
T 2ece_A          150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN  228 (462)
T ss_dssp             EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred             EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence            776422121222256799999998864333221222222 222222 2233333332          232221   3478


Q ss_pred             cEEEEECCCCeeEEeeecCCC-CCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecc
Q 010847          161 DVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  227 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~~~-p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  227 (499)
                      .|.+||+.+.+-...-..+.. ..||  +....++  +.++|+..-.+.....+.|++|....+.|....
T Consensus       229 ~V~v~D~~~~k~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          229 RIHFWDLRKRKRIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             EEEEEETTTTEEEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            999999988643222111100 0011  1111122  456777654222223456666555557777654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.82  E-value=9.3  Score=40.37  Aligned_cols=142  Identities=13%  Similarity=0.036  Sum_probs=73.9

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.|+++||...      -+++||+.++++..+... ..+....-.+++.. ++.|++...        +-+.+||+.+.
T Consensus       482 ~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWigt~--------~Gl~~~~~~~~  546 (758)
T 3ott_A          482 EGNVWVLLYNNK------GIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVGFH--------GGVMRINPKDE  546 (758)
T ss_dssp             TSCEEEEETTCS------SEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEEET--------TEEEEECC--C
T ss_pred             CCCEEEEccCCC------CcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEEec--------CceEEEecCCC
Confidence            467888655432      299999999998887421 11111111222222 467886421        24899999888


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY  249 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~  249 (499)
                      ++..... ..+|. ..-.+++. .++.|++.+.       +-+.+||+.+.+.....    .+..... +++.. .+.-+
T Consensus       547 ~~~~~~~-~gl~~-~~i~~i~~-~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~G~l  611 (758)
T 3ott_A          547 SQQSISF-GSFSN-NEILSMTC-VKNSIWVSTT-------NGLWIIDRKTMDARQQN----MTNKRFT-SLLFDPKEDCV  611 (758)
T ss_dssp             CCCBCCC-CC----CCEEEEEE-ETTEEEEEES-------SCEEEEETTTCCEEEC------CCCCCS-EEEEETTTTEE
T ss_pred             ceEEecc-cCCCc-cceEEEEE-CCCCEEEECC-------CCeEEEcCCCceeEEec----CCCCcee-eeEEECCCCcE
Confidence            7765532 22332 22223333 4666777543       35899999988876642    2222222 23333 34455


Q ss_pred             EEeCCCCCCCcceEEEEECC
Q 010847          250 IVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       250 v~GG~~~~~~~~~~~~~d~~  269 (499)
                      .|||.+      -+..|||.
T Consensus       612 ~fG~~~------Gl~~f~p~  625 (758)
T 3ott_A          612 YLGGAD------GFGISHSN  625 (758)
T ss_dssp             EEECBS------EEEEEEC-
T ss_pred             EEecCC------ceEEEChh
Confidence            567643      24555554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=86.80  E-value=18  Score=32.86  Aligned_cols=147  Identities=14%  Similarity=0.046  Sum_probs=69.7

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.+++.|+.+      ..+.++|..++.-...-.   ..... -.++.. .++.+++.|+.+      ..+.+||+.+.
T Consensus        24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~   87 (304)
T 2ynn_A           24 TEPWVLTTLYS------GRVELWNYETQVEVRSIQ---VTETP-VRAGKFIARKNWIIVGSDD------FRIRVFNYNTG   87 (304)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSC-EEEEEEEGGGTEEEEEETT------SEEEEEETTTC
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCceeEEee---ccCCc-EEEEEEeCCCCEEEEECCC------CEEEEEECCCC
Confidence            35566666643      348888988876433221   11111 112222 245566666643      35888998876


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEE
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW  248 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l  248 (499)
                      +-...-. +   ....-.+++...++.+++.|+.+     ..+.++|+.+.. .......  .....-.+++..  ++.+
T Consensus        88 ~~~~~~~-~---h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           88 EKVVDFE-A---HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             CEEEEEE-C---CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTE
T ss_pred             cEEEEEe-C---CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCE
Confidence            5322111 1   11111223333345466777654     358888876542 1110000  011111122222  3457


Q ss_pred             EEEeCCCCCCCcceEEEEECCCC
Q 010847          249 YIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       249 ~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      ++.|+.+.     .+.+||+.+.
T Consensus       156 l~sgs~D~-----~v~iwd~~~~  173 (304)
T 2ynn_A          156 FASGCLDR-----TVKVWSLGQS  173 (304)
T ss_dssp             EEEEETTS-----EEEEEETTCS
T ss_pred             EEEEeCCC-----eEEEEECCCC
Confidence            77777543     4677887543

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=86.63  E-value=0.21  Score=51.03  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=3.9

Q ss_pred             ceEEEEEcC
Q 010847          300 EHHLVAFGG  308 (499)
Q Consensus       300 ~~~l~v~GG  308 (499)
                      +.+.+.+++
T Consensus       253 k~F~I~~~~  261 (575)
T 2i1j_A          253 RKFIIKPID  261 (575)
T ss_dssp             TEEEEEESC
T ss_pred             CeEEEEEcc
Confidence            334444443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.61  E-value=4.2  Score=32.14  Aligned_cols=50  Identities=18%  Similarity=0.269  Sum_probs=27.1

Q ss_pred             hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847          407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  456 (499)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~  456 (499)
                      ++.++..+...+..+..++..+..++..++.+....+.....+++++..+
T Consensus        30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L   79 (135)
T 2e7s_A           30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL   79 (135)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555666666666666666555555555555555554444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=86.23  E-value=19  Score=32.63  Aligned_cols=108  Identities=8%  Similarity=0.051  Sum_probs=53.8

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE----CCEEEEEcCcCCCCCccCcEEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFL  165 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~y  165 (499)
                      ++.+++.|+.+      ..+.+||+.++  .+..+..   +......-.++.+    ++.+++.|+.+      ..+.+|
T Consensus        22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSD------QHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYD------KTVKLW   86 (351)
T ss_dssp             SSSEEEEEETT------SEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETT------SCEEEE
T ss_pred             CCCEEEEeeCC------CeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEE
Confidence            45566666643      23777776643  4444331   1111122223333    25677777754      358888


Q ss_pred             ECCCC-------eeEEeeecCCCCCCCccceEEEE-cC--cEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          166 DLETM-------TWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       166 d~~t~-------~W~~~~~~~~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      |+.+.       .|..+.....   .......+.+ .+  +.+++.|+.+     ..+.+||+.+..
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~  145 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLND---SKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPS  145 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTT
T ss_pred             ecCCCcccccccCcceeeeecc---cCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChH
Confidence            88664       3344433211   1122223333 23  4466666644     368899987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=86.21  E-value=20  Score=32.69  Aligned_cols=165  Identities=7%  Similarity=-0.003  Sum_probs=78.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC-CCCCCCCcceEEEEECCEEEEE----cCcCC-------CCCcc
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS-GKVPVARGGHSVTLVGSRLIIF----GGEDR-------SRKLL  159 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~lyv~----GG~~~-------~~~~~  159 (499)
                      +++||+....      ...+.+||+. ++...+... ...+.......++.-++.||+.    |-...       .....
T Consensus        96 dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           96 QQRLVHCEHG------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             TSCEEEEETT------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             CCCEEEEECC------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            5677776321      1348899986 666665421 0111111122222235678874    32210       01123


Q ss_pred             CcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcc
Q 010847          160 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  238 (499)
Q Consensus       160 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  238 (499)
                      ..+++||+.+.++..+. ....|     ..++...+ ..||+..........+.|++||+..............+.. .-
T Consensus       169 ~~v~~~d~~~g~~~~~~-~~~~p-----~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~p  241 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA-DLDHP-----NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG-LP  241 (305)
T ss_dssp             EEEEEECSSSCCCEEEE-EESSE-----EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS-CC
T ss_pred             CeEEEEcCCCCcEEEEe-cCCCC-----cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC-CC
Confidence            57999999888877664 11111     22333334 4577754321111125799999876543221110111111 11


Q ss_pred             cEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          239 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       239 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      ..++.. ++.+|+..+       ..+++||+.......+.
T Consensus       242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred             CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence            122222 456776532       24899999766555543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=86.11  E-value=20  Score=32.80  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-------CCEEEEEcCcCCCCCccCcEEE
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-------GSRLIIFGGEDRSRKLLNDVHF  164 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~v~~  164 (499)
                      ++.+++.|+.++      .+.++|+....-..+.  + ....  -.++...       ++.+++.||.+      ..+.+
T Consensus       118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~--~-h~~~--v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~  180 (319)
T 3frx_A          118 KASMIISGSRDK------TIKVWTIKGQCLATLL--G-HNDW--VSQVRVVPNEKADDDSVTIISAGND------KMVKA  180 (319)
T ss_dssp             TSCEEEEEETTS------CEEEEETTSCEEEEEC--C-CSSC--EEEEEECCC------CCEEEEEETT------SCEEE
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCeEEEEe--c-cCCc--EEEEEEccCCCCCCCccEEEEEeCC------CEEEE
Confidence            456677776543      3788888655333332  1 1100  1111111       22355555543      35888


Q ss_pred             EECCCCeeEEeeecCCCCCCCccc-eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          165 LDLETMTWDAVEVTQTPPAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       165 yd~~t~~W~~~~~~~~~p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      +|+.+.+-...-. +    ..... +++...++.+++.||.+     ..+.+||+.+.+
T Consensus       181 wd~~~~~~~~~~~-~----h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~  229 (319)
T 3frx_A          181 WNLNQFQIEADFI-G----HNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKK  229 (319)
T ss_dssp             EETTTTEEEEEEC-C----CCSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred             EECCcchhheeec-C----CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence            9987765432211 1    11112 22333455567777754     368899988765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=85.92  E-value=31  Score=34.66  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             EEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cC-cEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          146 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-AN-RYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       146 lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      +++.|+.+      ..+.+||+.+.+-...-.  ..........++.+ .+ +.+++.|+.+     ..+.+||+.+...
T Consensus       175 ~l~~~~~d------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~  241 (615)
T 1pgu_A          175 RSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEF  241 (615)
T ss_dssp             EEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCE
T ss_pred             EEEEEeCC------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCE
Confidence            66666643      368899987765432211  10000002223333 34 5566766654     3689999887764


Q ss_pred             EecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          224 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       224 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      ...-..........-.+++..++..++.|+.+     ..+.+||+.+....
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred             eEEecccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEE
Confidence            43210000011111112222266677777643     24788898876544

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.63  E-value=3.7  Score=28.55  Aligned_cols=67  Identities=21%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847          381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  454 (499)
Q Consensus       381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  454 (499)
                      .+++.|-.+..++-........-...|-.+++++..+.+-+.       .++...++-..+++.++.|++++++
T Consensus         9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~-------~El~s~~~~~~r~~~ri~elEeElk   75 (77)
T 2w83_C            9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ-------GELEAVKQAKLKLEEKNRELEEELR   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444333222222233444444444444444443       3333333334444444444444443

>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}

Probab=85.45  E-value=14  Score=30.22  Aligned_cols=6  Identities=33%  Similarity=0.728  Sum_probs=2.3

Q ss_pred             hhhHHH
Q 010847          405 SRFREK  410 (499)
Q Consensus       405 ~~l~~~  410 (499)
                      .+|+..
T Consensus        58 ~qlre~   63 (169)
T 3k29_A           58 RQLREQ   63 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=85.38  E-value=23  Score=32.72  Aligned_cols=146  Identities=12%  Similarity=-0.017  Sum_probs=74.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      .+|+++..     -..++.||+.++........                  ......+..-++.+++...        ..
T Consensus        62 ~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------------------~~v~~i~~~~dg~l~v~~~--------~g  110 (326)
T 2ghs_A           62 TAWWFNIL-----ERELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------DG  110 (326)
T ss_dssp             EEEEEEGG-----GTEEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------TE
T ss_pred             EEEEEECC-----CCEEEEEECCCCcEEEEECC------------------CcceEEEEeCCCeEEEEEC--------CC
Confidence            56666432     23689999998876554321                  1112222234677777541        23


Q ss_pred             EEEEECCCCcEEEeecCCC-CCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGK-VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      +++||+.++....+..... .+..+....++.-++++|+.............+++||  +.+...+.....     ....
T Consensus       111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-----~~~~  183 (326)
T 2ghs_A          111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-----IPNS  183 (326)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-----SEEE
T ss_pred             EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-----ccCC
Confidence            9999999999877752111 1111111112222467776321111111245789998  566655432101     1112


Q ss_pred             EEEEcC-cEEEEEcCCCCCCCCCcEEEEECC
Q 010847          190 AALHAN-RYLIVFGGCSHSIFFNDLHVLDLQ  219 (499)
Q Consensus       190 ~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~  219 (499)
                      ++...+ +.+|+....     .+.|++||+.
T Consensus       184 i~~s~dg~~lyv~~~~-----~~~I~~~d~~  209 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTK-----VNRLMRVPLD  209 (326)
T ss_dssp             EEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred             eEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence            333323 356775432     2579999975

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.32  E-value=2.3  Score=33.61  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=14.7

Q ss_pred             HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      .+..+|...+........+.+++...+.++++.+
T Consensus        46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L   79 (135)
T 2e7s_A           46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDL   79 (135)
T ss_dssp             HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=85.25  E-value=23  Score=32.67  Aligned_cols=146  Identities=13%  Similarity=0.047  Sum_probs=74.4

Q ss_pred             CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847          144 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  223 (499)
Q Consensus       144 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  223 (499)
                      +.+|+++..      ...+++||+.+.....+..    +  ..-.+++...++.+++...       +.+++||+.++..
T Consensus        61 ~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~--~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~  121 (326)
T 2ghs_A           61 GTAWWFNIL------ERELHELHLASGRKTVHAL----P--FMGSALAKISDSKQLIASD-------DGLFLRDTATGVL  121 (326)
T ss_dssp             TEEEEEEGG------GTEEEEEETTTTEEEEEEC----S--SCEEEEEEEETTEEEEEET-------TEEEEEETTTCCE
T ss_pred             CEEEEEECC------CCEEEEEECCCCcEEEEEC----C--CcceEEEEeCCCeEEEEEC-------CCEEEEECCCCcE
Confidence            678877543      3469999999887655432    1  1223333444666766542       3599999998887


Q ss_pred             EecccCCC-CCCcCcccEEEEE-CCEEEEEeCCC-CCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010847          224 SQPEIKGD-LVTGRAGHAGITI-DENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  300 (499)
Q Consensus       224 ~~~~~~~~-~p~~r~~~~~~~~-~~~l~v~GG~~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~  300 (499)
                      ..+..... .+..+. ..++.. ++++|+..... .......+|++|  +.....+....        ......+...+.
T Consensus       122 ~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~--------~~~~~i~~s~dg  190 (326)
T 2ghs_A          122 TLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI--------SIPNSICFSPDG  190 (326)
T ss_dssp             EEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE--------SSEEEEEECTTS
T ss_pred             EEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC--------cccCCeEEcCCC
Confidence            76532111 111111 122222 45666643211 111235689998  45555442110        011112222233


Q ss_pred             eEEEEEcCCCCCCCceEEEEECC
Q 010847          301 HHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       301 ~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      ..||+....    ...+++|++.
T Consensus       191 ~~lyv~~~~----~~~I~~~d~~  209 (326)
T 2ghs_A          191 TTGYFVDTK----VNRLMRVPLD  209 (326)
T ss_dssp             CEEEEEETT----TCEEEEEEBC
T ss_pred             CEEEEEECC----CCEEEEEEcc
Confidence            466665432    2478888875

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=85.18  E-value=11  Score=28.80  Aligned_cols=20  Identities=20%  Similarity=0.124  Sum_probs=8.6

Q ss_pred             hhhHHHHHHHHHHHHHHhHH
Q 010847          438 RCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       438 ~~~~~~~~~~e~~~~l~~~~  457 (499)
                      ++..|..+++.-++.|+.++
T Consensus        46 qV~~L~~~~q~sE~~L~~Lq   65 (112)
T 1x79_B           46 QISALVLRAQASEILLEELQ   65 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=85.01  E-value=39  Score=35.00  Aligned_cols=149  Identities=15%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ++.+++.|+.+      ..+.++|+.+..-...-. +.   ...-.+++...++..++.|+.+     ..+.++|+....
T Consensus       441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~-~h---~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~  505 (694)
T 3dm0_A          441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV-GH---TKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGEC  505 (694)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEE-CC---SSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCE
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcceeEEe-CC---CCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCc
Confidence            45667777654      358899998875432211 11   1111222222344456666654     357777765443


Q ss_pred             eEecccCCCCCCcCcccEEEEE-CC---EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEc
Q 010847          223 WSQPEIKGDLVTGRAGHAGITI-DE---NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  298 (499)
Q Consensus       223 W~~~~~~~~~p~~r~~~~~~~~-~~---~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~  298 (499)
                      -..+.  ......+....++.+ .+   .+++.|+.++     .+.++|+.+..-...  +..      +......+...
T Consensus       506 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~--~~~------h~~~v~~v~~s  570 (694)
T 3dm0_A          506 KYTIS--EGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRST--LAG------HTGYVSTVAVS  570 (694)
T ss_dssp             EEEEC--SSTTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEE--ECC------CSSCEEEEEEC
T ss_pred             ceeec--cCCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEE--EcC------CCCCEEEEEEe
Confidence            22221  111111111222333 22   3566666443     477888877654321  111      11123333444


Q ss_pred             CceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          299 GEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       299 ~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+..+++.||.++    .+.++|+...
T Consensus       571 pdg~~l~sg~~Dg----~i~iwd~~~~  593 (694)
T 3dm0_A          571 PDGSLCASGGKDG----VVLLWDLAEG  593 (694)
T ss_dssp             TTSSEEEEEETTS----BCEEEETTTT
T ss_pred             CCCCEEEEEeCCC----eEEEEECCCC
Confidence            3334566677665    5667777543

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=85.00  E-value=6.2  Score=28.45  Aligned_cols=27  Identities=33%  Similarity=0.229  Sum_probs=10.6

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847          431 QLVAERSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       431 ~~~~~~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      +++.++..+.+|.-++++.+.++..++
T Consensus        28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~   54 (83)
T 2xdj_A           28 QLSDNQSDIDSLRGQIQENQYQLNQVV   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333333444444444444443333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=84.95  E-value=12  Score=28.98  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=15.2

Q ss_pred             HHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010847          401 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVA  434 (499)
Q Consensus       401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (499)
                      +..+.+|+..-...++++..+..++..++..+++
T Consensus        45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K   78 (167)
T 4gkw_A           45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEK   78 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHH
Confidence            3344444444444444444444444444444433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=84.93  E-value=28  Score=33.32  Aligned_cols=107  Identities=13%  Similarity=0.050  Sum_probs=56.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.+      ..+.+||+.+..-...-   ..+.......++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCC
Confidence            36677777653      34999999887643332   11111112233333  45677777654      3589999988


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-----cCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-----ANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-----~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ......-.   .+ .......+.+     .++.+++.|+.+     ..+.+||+.+..
T Consensus       246 ~~~~~~~~---~~-~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  294 (437)
T 3gre_A          246 NVLIRSWS---FG-DHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGH  294 (437)
T ss_dssp             TEEEEEEB---CT-TCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTE
T ss_pred             ccEEEEEe---cC-CCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCc
Confidence            66533211   01 1111112211     245456666543     358889987765

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=84.89  E-value=18  Score=31.19  Aligned_cols=153  Identities=12%  Similarity=0.064  Sum_probs=80.5

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND  161 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~  161 (499)
                      +++.+.+.+|+|=|.        -+|+++.....+......   ..+|. ... ++...  ++++|+|=|.        .
T Consensus        28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~--------~   89 (207)
T 1pex_A           28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR--------K   89 (207)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT--------E
T ss_pred             EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC--------E
Confidence            455678999999763        288887655444333221   12342 222 22223  5899999662        4


Q ss_pred             EEEEECCCCee---EEeeecCCCCCCCccc-eEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccC-C
Q 010847          162 VHFLDLETMTW---DAVEVTQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-G  230 (499)
Q Consensus       162 v~~yd~~t~~W---~~~~~~~~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-~  230 (499)
                      +|.|+-.+..-   ..+...| +|.....- ++... +++++|+|-|       +..|+||..+.+-..     +... .
T Consensus        90 ~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~  161 (207)
T 1pex_A           90 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP  161 (207)
T ss_dssp             EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             EEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence            66665322111   1121112 23211112 22222 3578999988       478999987653221     1000 1


Q ss_pred             CCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          231 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       231 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      .+|  ..-.++...++.+|+|-|       +..|+||..+..-.
T Consensus       162 Gip--~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~  196 (207)
T 1pex_A          162 GIG--DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV  196 (207)
T ss_dssp             TSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred             CCC--CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence            122  122344456889999977       26889998776533

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=84.79  E-value=42  Score=36.85  Aligned_cols=145  Identities=14%  Similarity=-0.008  Sum_probs=74.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEE-EEECCCCeeEEeeecCCCCCCCccc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH-FLDLETMTWDAVEVTQTPPAPRYDH  188 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~-~yd~~t~~W~~~~~~~~~p~~r~~~  188 (499)
                      .++.++..++....+.   ..+.......+.. +++.+++++.      .+.++ ++|+.+.....+.  +   ......
T Consensus       318 ~i~~~~~~~~~~~~~~---~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~---~~~~~~  382 (1045)
T 1k32_A          318 QAFIQDVSGTYVLKVP---EPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--E---NLGNVF  382 (1045)
T ss_dssp             EEEEECTTSSBEEECS---CCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC--C---CCCSEE
T ss_pred             EEEEEcCCCCceEEcc---CCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec--C---Ccccee
Confidence            4888888877655443   1121011112222 4444444332      23688 8999887655443  1   111222


Q ss_pred             eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCC-----CCCcceE
Q 010847          189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN-----NNGCQET  263 (499)
Q Consensus       189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~-----~~~~~~~  263 (499)
                      .++...++..++++...     +.++++|+.++.-..+....   .......+..-+++.+++++.+.     ......+
T Consensus       383 ~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~---~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSR---EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             EEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECS---SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCC---CCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            33333455455565532     47999999988766653111   11111112222455555554332     1223579


Q ss_pred             EEEECCCCceEEec
Q 010847          264 IVLNMTKLAWSILT  277 (499)
Q Consensus       264 ~~~d~~~~~W~~l~  277 (499)
                      +++|+.+.....+.
T Consensus       455 ~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          455 HVYDMEGRKIFAAT  468 (1045)
T ss_dssp             EEEETTTTEEEECS
T ss_pred             EEEECCCCcEEEee
Confidence            99999988755543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=84.77  E-value=15  Score=30.00  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=12.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHH
Q 010847          436 RSRCFKLEAQIAELQKMLESSQ  457 (499)
Q Consensus       436 ~~~~~~~~~~~~e~~~~l~~~~  457 (499)
                      .++...++.++..++.+|+...
T Consensus        69 sqrEd~yEeqIk~L~~kLKEAE   90 (155)
T 2efr_A           69 SQKEDKYEEEIKVLSDKLKEAE   90 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666655554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=84.72  E-value=25  Score=32.59  Aligned_cols=153  Identities=6%  Similarity=0.003  Sum_probs=79.0

Q ss_pred             ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECC-
Q 010847           91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE-  168 (499)
Q Consensus        91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~-  168 (499)
                      -++.+|+.|..   .    .+++-+-.-.+|+.+..    +.+...+.++.. ++.+|++|-.       ..++.-+-. 
T Consensus       131 ~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~d~g  192 (327)
T 2xbg_A          131 GNGSAEMITNV---G----AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GSFYSTWEPG  192 (327)
T ss_dssp             ETTEEEEEETT---C----CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SSEEEEECTT
T ss_pred             CCCCEEEEeCC---c----cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------CcEEEEeCCC
Confidence            46788887641   1    25554333568999862    222223333333 4566666532       134444322 


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC-CCceEecccCCCCCCcCcccEEEEE-CC
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DE  246 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~  246 (499)
                      ..+|+.+..    +.+...+.++...++.+|+.+..+      .+++.+.. ..+|+.+.. +.++.....++++.. ++
T Consensus       193 G~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          193 QTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             CSSCEEEEC----CSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBC-TTSSCCSCEEEEEESSSS
T ss_pred             CCceeECCC----CCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccC-CcccCCcceEEEEecCCC
Confidence            578998853    334445555544566678776421      35554333 457988642 112222223344433 45


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  278 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~  278 (499)
                      .+|++|+..      .+++-.-.-.+|+.+..
T Consensus       262 ~~~~~g~~g------~i~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          262 EVWLAGGAG------ALLCSQDGGQTWQQDVD  287 (327)
T ss_dssp             CEEEEESTT------CEEEESSTTSSCEECGG
T ss_pred             EEEEEeCCC------eEEEeCCCCcccEEcCc
Confidence            788877621      24433334578998764

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.60  E-value=5.6  Score=39.46  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=10.8

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847          454 ESSQTIENEVQILRQQKSAFEQEME  478 (499)
Q Consensus       454 ~~~~~~~~e~~~~~~~~~~~~~~~~  478 (499)
                      .++++++.|+-.+.++++..+-+.+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=84.57  E-value=18  Score=30.89  Aligned_cols=155  Identities=12%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCC---CcEEEeecC-CCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcE
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLET---NLCGVMETS-GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV  162 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~-g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v  162 (499)
                      +++.+.+++|+|-|.        .+|+++...   +-=..+... ..+|. ...++....++++|+|-|        +.+
T Consensus        10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y   72 (196)
T 3c7x_A           10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH   72 (196)
T ss_dssp             EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred             EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence            345678999999873        277775431   100112111 12443 222222224678999865        347


Q ss_pred             EEEECCCCee---EEeeecC-CCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe--cccCCCC-CCc
Q 010847          163 HFLDLETMTW---DAVEVTQ-TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKGDL-VTG  235 (499)
Q Consensus       163 ~~yd~~t~~W---~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~~~-p~~  235 (499)
                      |.|+..+...   ..+...+ .+|...-..+.....++++|+|-|       +..|+||..+.+-..  +.....+ ..|
T Consensus        73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip  145 (196)
T 3c7x_A           73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIP  145 (196)
T ss_dssp             EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCC
T ss_pred             EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcC
Confidence            8887532111   1111111 133222222222223677999987       468999987654221  0000011 112


Q ss_pred             CcccEEEEE-CC-EEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          236 RAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       236 r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ..-.++... ++ .+|+|-|       +..|+||..+..
T Consensus       146 ~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~  177 (196)
T 3c7x_A          146 ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK  177 (196)
T ss_dssp             SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred             CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence            222344444 33 8999977       268999987754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=84.08  E-value=24  Score=31.83  Aligned_cols=185  Identities=8%  Similarity=0.045  Sum_probs=90.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .+++.|..+     ..+.++|+.+++  |+.-....                 ....+..+.-++.||+.+        .
T Consensus         6 ~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~-----------------~~~~~~~~~pdG~ilvs~--------~   55 (276)
T 3no2_A            6 HLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKAGEILFSY--------S   55 (276)
T ss_dssp             EEEEECTTC-----SEEEEEETTTTEEEEEEECCTT-----------------CCCCEEEECTTSCEEEEC--------B
T ss_pred             cEEEeeCCC-----CEEEEEECCCCeEEEEeCCCcc-----------------CCCcCeEECCCCCEEEeC--------C
Confidence            566665532     458899998886  55432110                 122222333367787732        2


Q ss_pred             ceEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCCCC
Q 010847          109 MIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  184 (499)
Q Consensus       109 ~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p~~  184 (499)
                      +.++.||+ ++  .|+-..     +....-+++... ++++++.....     ...++.+|+.... |+.... +..+.+
T Consensus        56 ~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~-~~~~~~  123 (276)
T 3no2_A           56 KGAKMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFE-TGIERP  123 (276)
T ss_dssp             SEEEEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEEC-CSCSSG
T ss_pred             CCEEEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEecc-CCCCcc
Confidence            34999998 55  355432     111122333333 45555543221     2357888874432 433211 111111


Q ss_pred             -CccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCc
Q 010847          185 -RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGC  260 (499)
Q Consensus       185 -r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~  260 (499)
                       ...+.+....++.+++....     .+.+..||++ ++  |+.-.  +.     ..+++..+ ++.++|++..+     
T Consensus       124 ~~~~~~v~~~~~G~~lv~~~~-----~~~v~~~d~~-G~~~w~~~~--~~-----~~~~~~~~~~g~~~v~~~~~-----  185 (276)
T 3no2_A          124 HAQFRQINKNKKGNYLVPLFA-----TSEVREIAPN-GQLLNSVKL--SG-----TPFSSAFLDNGDCLVACGDA-----  185 (276)
T ss_dssp             GGSCSCCEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEEEC--SS-----CCCEEEECTTSCEEEECBTT-----
T ss_pred             cccccCceECCCCCEEEEecC-----CCEEEEECCC-CCEEEEEEC--CC-----CccceeEcCCCCEEEEeCCC-----
Confidence             11112223334435554322     2468999987 43  66521  11     12334444 56777765532     


Q ss_pred             ceEEEEECCCCc--eEE
Q 010847          261 QETIVLNMTKLA--WSI  275 (499)
Q Consensus       261 ~~~~~~d~~~~~--W~~  275 (499)
                      ..++.||+.+++  |+.
T Consensus       186 ~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             SEEEEECTTTCCEEEEE
T ss_pred             CeEEEEeCcCCcEEEEe
Confidence            358999998654  664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=84.03  E-value=26  Score=32.22  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             cCcEEEEECCCCee-EEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC---C-CCcEEEEECCCCceEecccCCCCC
Q 010847          159 LNDVHFLDLETMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---F-FNDLHVLDLQTNEWSQPEIKGDLV  233 (499)
Q Consensus       159 ~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~-~~~i~~~d~~~~~W~~~~~~~~~p  233 (499)
                      ...++.+|+.+... ..+..    +   .........++ +++.+......   . ...+|.+|  ++.+..+...    
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----  216 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----  216 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----
T ss_pred             cceEEEEECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC----
Confidence            35799999999887 55542    1   22334444566 55555433221   2 45788888  6677665321    


Q ss_pred             CcCcccEEEEECCEEEEEeCCCCC---CCcceEEEEECCCCceEEec
Q 010847          234 TGRAGHAGITIDENWYIVGGGDNN---NGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       234 ~~r~~~~~~~~~~~l~v~GG~~~~---~~~~~~~~~d~~~~~W~~l~  277 (499)
                         .......-+++.+++++....   .....++++|  +..+..+.
T Consensus       217 ---~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~  258 (347)
T 2gop_A          217 ---VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL  258 (347)
T ss_dssp             ---ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred             ---cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence               111122334544444432221   1245789999  66666553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=82.97  E-value=29  Score=31.94  Aligned_cols=159  Identities=8%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ..+ +++.|+.+.      .+.+||+.++.+..+........ .....++.+  ++.+++.|+.+.      .+.++|+.
T Consensus        23 s~~-~las~~~D~------~i~lw~~~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~las~s~D~------~v~iw~~~   88 (330)
T 2hes_X           23 SQG-ILATGSTDR------KIKLVSVKYDDFTLIDVLDETAH-KKAIRSVAWRPHTSLLAAGSFDS------TVSIWAKE   88 (330)
T ss_dssp             ETT-EEEEEESSS------CEEEEECSSSCCEEEEEECTTCC-CSCEEEEEECTTSSEEEEEETTS------CEEEEEC-
T ss_pred             CCC-EEEEEcCCC------EEEEEEecCCCeEEEEEEecCCc-cCCEEEEEECCCCCEEEEEeCCC------cEEEEEcc
Confidence            345 666666433      38888988765544432101001 111222333  456777776543      47777764


Q ss_pred             CC-----eeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCC--CceEecccCCCCCCcCcccE
Q 010847          169 TM-----TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHA  240 (499)
Q Consensus       169 t~-----~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~  240 (499)
                      ..     .+..+....   ........+.+ .++.+++.|+.+     ..+.++|+..  ..+..+....   .....-.
T Consensus        89 ~~~~~~~~~~~~~~~~---~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~---~h~~~v~  157 (330)
T 2hes_X           89 ESADRTFEMDLLAIIE---GHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQ---EHSQDVK  157 (330)
T ss_dssp             ------CCCEEEEEEC-------CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEEC---CCSSCEE
T ss_pred             cCcCccccceeEEEEc---CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEec---cCCCceE
Confidence            32     232222210   01111222333 355567777654     3588888743  2343322101   0111112


Q ss_pred             EEEE--CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccC
Q 010847          241 GITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  279 (499)
Q Consensus       241 ~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~  279 (499)
                      .+..  ++.+++.|+.+.     .+.++|..+..|..+..+
T Consensus       158 ~v~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             EEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEc
Confidence            2222  456777776543     366777777766655444

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=82.21  E-value=12  Score=30.35  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847          458 TIENEVQILRQQKSAFEQEMERAT  481 (499)
Q Consensus       458 ~~~~e~~~~~~~~~~~~~~~~~~~  481 (499)
                      +++++..++.+++.++..+++++.
T Consensus        81 q~~~ek~~r~e~k~~l~~ql~qv~  104 (150)
T 4dci_A           81 QVAGKRSELEEQKRNLLQQQAQVR  104 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555555666665555555443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=82.18  E-value=28  Score=31.31  Aligned_cols=149  Identities=9%  Similarity=0.014  Sum_probs=73.2

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      +++++.|..      ...++.+|..+++  |+...   ... .......+.-+++|++.+        .+.++.||+ ++
T Consensus         5 ~~~lv~~~~------~~~v~~~d~~tG~~~w~~~~---~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G   65 (276)
T 3no2_A            5 QHLLVGGSG------WNKIAIINKDTKEIVWEYPL---EKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DG   65 (276)
T ss_dssp             CEEEEECTT------CSEEEEEETTTTEEEEEEEC---CTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TS
T ss_pred             CcEEEeeCC------CCEEEEEECCCCeEEEEeCC---Ccc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CC
Confidence            567777653      2448999998885  55442   110 112223333467787732        245999998 44


Q ss_pred             --eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc-eEecccCCCC--CCcCcccEEEEEC
Q 010847          171 --TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDL--VTGRAGHAGITID  245 (499)
Q Consensus       171 --~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~--p~~r~~~~~~~~~  245 (499)
                        .|+.-.     +.....+++....++.+++.....    ...++.+|++... |+.. .....  +...........+
T Consensus        66 ~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~-~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           66 RELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTE-FETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             CEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEE-ECCSCSSGGGSCSCCEECTT
T ss_pred             CEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEe-ccCCCCcccccccCceECCC
Confidence              365332     111223344444555455543321    2367888875442 4432 11111  1111112223335


Q ss_pred             CEEEEEeCCCCCCCcceEEEEECCCC-ceEE
Q 010847          246 ENWYIVGGGDNNNGCQETIVLNMTKL-AWSI  275 (499)
Q Consensus       246 ~~l~v~GG~~~~~~~~~~~~~d~~~~-~W~~  275 (499)
                      +.+++....     ...+..||+.-. .|+.
T Consensus       136 G~~lv~~~~-----~~~v~~~d~~G~~~w~~  161 (276)
T 3no2_A          136 GNYLVPLFA-----TSEVREIAPNGQLLNSV  161 (276)
T ss_dssp             SCEEEEETT-----TTEEEEECTTSCEEEEE
T ss_pred             CCEEEEecC-----CCEEEEECCCCCEEEEE
Confidence            566665432     235889998732 2553

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=82.00  E-value=7.3  Score=29.87  Aligned_cols=14  Identities=7%  Similarity=0.088  Sum_probs=5.2

Q ss_pred             HHHHHHHhHHHHHH
Q 010847          462 EVQILRQQKSAFEQ  475 (499)
Q Consensus       462 e~~~~~~~~~~~~~  475 (499)
                      ++..+.++++.+..
T Consensus        86 ~i~~l~~~~~~l~~   99 (112)
T 1l8d_A           86 RKSELERELRRIDM   99 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.90  E-value=2.2  Score=27.85  Aligned_cols=29  Identities=10%  Similarity=0.148  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      .+.++.+++.++.++..|..+++|++.+|
T Consensus        21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           21 IELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=81.27  E-value=13  Score=34.32  Aligned_cols=139  Identities=14%  Similarity=-0.063  Sum_probs=68.8

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEEEEECCC---CeeEEeeecCCCCC
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPA  183 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~~~~p~  183 (499)
                      ..+++||+.++....+......|     ..++.. + +.||+.-.      ..+.|++|++.+   .....+..   .+.
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~g  230 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPN  230 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSS
T ss_pred             ceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCC
Confidence            46999999888766553211122     123332 3 35777622      135789999875   23443331   221


Q ss_pred             CCccceEEEEcCcEEEEEcCCCCC-----CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC
Q 010847          184 PRYDHSAALHANRYLIVFGGCSHS-----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  258 (499)
Q Consensus       184 ~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  258 (499)
                         -..++...++.|||.......     ...+.+.+||+....-..+......+ .....+++..++.|||....    
T Consensus       231 ---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~----  302 (322)
T 2fp8_A          231 ---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF----  302 (322)
T ss_dssp             ---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS----
T ss_pred             ---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC----
Confidence               123344445567776432100     01246889998654444443211111 12222344457788876432    


Q ss_pred             CcceEEEEECCC
Q 010847          259 GCQETIVLNMTK  270 (499)
Q Consensus       259 ~~~~~~~~d~~~  270 (499)
                       .+.+.+|++..
T Consensus       303 -~~~i~~~~~~~  313 (322)
T 2fp8_A          303 -HGSVGILVYDK  313 (322)
T ss_dssp             -CSEEEEEEC--
T ss_pred             -CCceEEEeccc
Confidence             23577777643

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=81.05  E-value=12  Score=26.10  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=12.7

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847          409 EKIDEVNSTHSELSKELSSVQGQLVAE  435 (499)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (499)
                      +++++.+..+.+++..++..++.++.-
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~Le~s   33 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRLEKS   33 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            344444444444544444444444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=81.04  E-value=23  Score=32.24  Aligned_cols=156  Identities=11%  Similarity=-0.019  Sum_probs=77.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++.||+.+..      ...+++|++ ++.......    +... -..++. -+++||+....      ...+..||+. .
T Consensus        56 g~~l~~~d~~------~~~i~~~~~-~g~~~~~~~----~~~~-~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g  116 (305)
T 3dr2_A           56 QRTLVWSDLV------GRRVLGWRE-DGTVDVLLD----ATAF-TNGNAVDAQQRLVHCEHG------RRAITRSDAD-G  116 (305)
T ss_dssp             GTEEEEEETT------TTEEEEEET-TSCEEEEEE----SCSC-EEEEEECTTSCEEEEETT------TTEEEEECTT-S
T ss_pred             CCEEEEEECC------CCEEEEEeC-CCCEEEEeC----CCCc-cceeeECCCCCEEEEECC------CCEEEEECCC-C
Confidence            4567776543      234899998 555554432    1111 122222 25678776321      2358888876 6


Q ss_pred             eeEEeeecCCCCCCCccceEEEEcCcEEEEE----cCCCC--------CCCCCcEEEEECCCCceEecccCCCCCCcCcc
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVF----GGCSH--------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  238 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~----GG~~~--------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  238 (499)
                      +...+...........-..++...++.+|+.    |-...        ....+.|++||+.++++..+.   ...   ..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~---~p  190 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD---HP  190 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES---SE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC---CC
Confidence            6655542111000111123444456667774    32110        012357999999888877652   111   11


Q ss_pred             cEEEEE-CC-EEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          239 HAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       239 ~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ..++.. ++ .+|+..........+.+++||+....
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            233333 23 57776442211123578999887554

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=80.76  E-value=16  Score=27.50  Aligned_cols=72  Identities=7%  Similarity=0.076  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHhhc--cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 010847          404 NSRFREKIDEVNS--THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEM  477 (499)
Q Consensus       404 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~  477 (499)
                      ...++..+..+..  ..++..+.+.+++..+++.++-+++++.+++.+.-.  .-.++..++..++.+++.+..++
T Consensus        28 ~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s--~R~~~~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           28 LEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLT--FRNPMMSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445555555422  224444556666666666666666665555444211  12267778888888877776654

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=80.50  E-value=22  Score=28.97  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847          425 LSSVQGQLVAERSRCFKLEAQIAELQKML  453 (499)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  453 (499)
                      +..+...+.....|.+..++.++.+++.+
T Consensus        79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~i  107 (155)
T 2efr_A           79 IKVLSDKLKEAETRAEFAERSVTKLEKSI  107 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=80.46  E-value=4.7  Score=39.05  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847          422 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT  458 (499)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  458 (499)
                      +.+++.++++..++++.+.+++.+++++++++.+.+.
T Consensus         9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   45 (403)
T 4etp_A            9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET   45 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444555444444443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=80.42  E-value=50  Score=33.03  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             CEEEEEccc-CCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           93 TKLLILGGH-YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        93 ~~iyv~GG~-~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      +..++.|+. ++      .+.+||..++.... .   ..........++.+  ++++++.|+.+      ..+.+||+.+
T Consensus       456 ~~~l~~~~~~d~------~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~  519 (615)
T 1pgu_A          456 QNYVAVGLEEGN------TIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQS  519 (615)
T ss_dssp             SSEEEEEETTTS------CEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCEEEEeecCCC------eEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCC
Confidence            555566654 22      38999998876543 2   22222222333333  56677777653      3589999987


Q ss_pred             CeeEEeeecCCCCC-CCccceEEEE-c----------CcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847          170 MTWDAVEVTQTPPA-PRYDHSAALH-A----------NRYLIVFGGCSHSIFFNDLHVLDLQTN  221 (499)
Q Consensus       170 ~~W~~~~~~~~~p~-~r~~~~~~~~-~----------~~~l~v~GG~~~~~~~~~i~~~d~~~~  221 (499)
                      .+-...     ... .......+.+ .          ++.+++.|+.+     ..+.+||+.+.
T Consensus       520 ~~~~~~-----~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~  573 (615)
T 1pgu_A          520 REVKTS-----RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-----TNIFIYSVKRP  573 (615)
T ss_dssp             TEEEEC-----CSCCCSSCEEEEEECCCC------CCSCCEEEEEETT-----SCEEEEESSCT
T ss_pred             CcceeE-----eecCCCCceeEEEEcCccccccccccCCCEEEEEcCC-----CcEEEEECCCC
Confidence            654322     111 1222233333 3          45567777654     36999998875

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=80.26  E-value=7.7  Score=27.39  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=9.1

Q ss_pred             hhhhhHHHHHHhhccchHHHHHH
Q 010847          403 ENSRFREKIDEVNSTHSELSKEL  425 (499)
Q Consensus       403 ~~~~l~~~~~~~~~~~~~~~~~~  425 (499)
                      ++..|+..+.+++.+.-..++.+
T Consensus        27 Ei~~Lr~kv~elEnErlQyEkKL   49 (81)
T 3qh9_A           27 ELRHLKIKVEELENERNQYEWKL   49 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444443333333333

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=80.12  E-value=7.8  Score=28.62  Aligned_cols=40  Identities=30%  Similarity=0.524  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847          441 KLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA  480 (499)
Q Consensus       441 ~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~  480 (499)
                      +|+.++.++++++..++..+.+...++.+-.-++.+|+..
T Consensus        51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F   90 (96)
T 1t3j_A           51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555543

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=80.10  E-value=12  Score=28.20  Aligned_cols=59  Identities=17%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847          422 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS  482 (499)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  482 (499)
                      .+.+.+++..+++..+-+.+++.+++.+.-  ..-.++..++..++.+++.+..++++++.
T Consensus        37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~--~~R~~~~~klr~Yk~dL~~lk~elk~~~~   95 (102)
T 1vcs_A           37 KQMVANVEKQLEEARELLEQMDLEVREIPP--QSRGMYSNRMRSYKQEMGKLETDFKRSRI   95 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT--TTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455555555555544444444433321  11227788888888888888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	499
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-11
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-06

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 41/314 (13%), Positives = 77/314 (24%), Gaps = 75/314 (23%)

Query: 27  PRY-KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD 85
           P+  + +Y  GG    + LS ++ ++  +  W  L                 ++  P S 
Sbjct: 1   PKVGRLIYTAGG-YFRQSLSYLEAYNPSNGTWLRLA----------------DLQVPRSG 43

Query: 86  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR 145
                 G  L  +GG       +     +D    +         + V R    V ++   
Sbjct: 44  LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 103

Query: 146 LIIFG----------------------------------------------GEDRSRKLL 159
           +   G                                              G       L
Sbjct: 104 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 163

Query: 160 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ 219
           N       E   W  +    T        +     +  +   GG       N +   D++
Sbjct: 164 NSAECYYPERNEWRMITAMNTI----RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 219

Query: 220 TNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 279
           T  W+       +   R+           Y++GG D +         +     WS +T +
Sbjct: 220 TETWTFVA---PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM 276

Query: 280 KGRNPLASEGLSVC 293
                    G+ V 
Sbjct: 277 ----TSGRSGVGVA 286

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 16/254 (6%)

Query: 92  GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG 151
           G  +   GG++++S     +   +              + V R G +  +VG  L   GG
Sbjct: 4   GRLIYTAGGYFRQSLSY--LEAYNPSNG---TWLRLADLQVPRSGLAGCVVGGLLYAVGG 58

Query: 152 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN 211
            + S     D   LD      +          PR         + ++   GG    I  N
Sbjct: 59  RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHN 117

Query: 212 DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 271
            +   + + +EW        ++T R G     ++   Y VGG D  N           + 
Sbjct: 118 SVERYEPERDEWHLV---APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN 174

Query: 272 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 331
            W ++T++           S     +       A G       N V    ++        
Sbjct: 175 EWRMITAMNTIR-------SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227

Query: 332 IFQSPAAAAAAASV 345
             +   +A      
Sbjct: 228 PMKHRRSALGITVH 241

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 39/330 (11%), Positives = 82/330 (24%), Gaps = 48/330 (14%)

Query: 3   SGSWHLELPYDLWVTLPVSGARPS--PRYKKLYIVGGSRNGRFLSD------VQVFDLRS 54
            G W   +       LP+  A  +  P   ++ +    RN  F            +D  +
Sbjct: 8   LGRWGPTID------LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST 61

Query: 55  LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRF 113
              S+                       ++ H M   G  +   G        D+     
Sbjct: 62  GIVSDRT-------------------VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102

Query: 114 IDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 173
            D  ++    +             S T+   R+   GG         +       + TW 
Sbjct: 103 YDSSSDSW--IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160

Query: 174 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-----NDLHVLDLQTNEWSQPE- 227
           ++   +  P    D      ++ +  +FG    S+F               + +      
Sbjct: 161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 220

Query: 228 ------IKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 281
                 +  D + G A        +     G  D  +    T    +T        +   
Sbjct: 221 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 280

Query: 282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNG 311
            +       +  ++++  +      GG   
Sbjct: 281 ASNGLYFARTFHTSVVLPDGSTFITGGQRR 310

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.62
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.27
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.18
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.36
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.25
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.16
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.98
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.97
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	94.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.19
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	93.53
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	93.46
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.07
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.21
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.92
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	91.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.21
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.57
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	90.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.35
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	90.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	89.08
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.44
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.38
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	88.23
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	88.22
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	87.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	87.44
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	87.22
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	86.66
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	86.03
d1tbga_	340	beta1-subunit of the signal-transducing G protein	85.89
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	85.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	84.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	84.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	84.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	84.22
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	82.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	82.23

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=306.77  Aligned_cols=277  Identities=19%  Similarity=0.273  Sum_probs=237.8

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC---CC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---SD  107 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~---~~  107 (499)
                      .||||||+.. ..++++++||+.+++|+.++++                |.+|.+|++++++++||++||.....   ..
T Consensus         6 ~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~----------------p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~   68 (288)
T d1zgka1           6 LIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD   68 (288)
T ss_dssp             CEEEECCBSS-SBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred             EEEEECCcCC-CCCceEEEEECCCCeEEECCCC----------------CCccceeEEEEECCEEEEEeCcccCCCCccc
Confidence            8999999864 5789999999999999999766                45899999999999999999975332   24


Q ss_pred             CceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      .+++++||+.+++|+.++   ++|.+|.+|++++++++||++||..... ..+.++.||+.++.|....   .+|.+|.+
T Consensus        69 ~~~~~~yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~r~~  141 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIG  141 (288)
T ss_dssp             CCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred             cchhhhcccccccccccc---cccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccc---cccccccc
Confidence            678999999999999987   8999999999999999999999987654 5788999999999998775   56789999


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      |+++.+. +.++++||.......++++.||+.++.|...   ...+.++..|+++.+++.++++||.+....+++.+.||
T Consensus       142 ~~~~~~~-~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         142 VGVAVLN-RLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             CEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             ceeeeee-ecceEecCcccccccceEEEeeccccccccc---cccccccccccccceeeeEEEecCccccccccceeeee
Confidence            9999884 4599999998888889999999999999986   56778889999999999999999988887788999999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC-CCCceEEEEECCCCCCCCCcccCCchhhhhhh
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-KYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAA  343 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  343 (499)
                      +.+.+|..++.+    |.+|.+++++  +++  +.|||+||.++ ...+++++||+..++|..+..+|.+|..++++
T Consensus       218 ~~~~~~~~~~~~----p~~r~~~~~~--~~~--~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~  286 (288)
T d1zgka1         218 VETETWTFVAPM----KHRRSALGIT--VHQ--GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA  286 (288)
T ss_dssp             TTTTEEEECCCC----SSCCBSCEEE--EET--TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred             ecceeeecccCc----cCcccceEEE--EEC--CEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEE
Confidence            999999998754    3445555543  344  47999999875 45678999999999999999999998776554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=283.47  Aligned_cols=254  Identities=18%  Similarity=0.225  Sum_probs=222.5

Q ss_pred             CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC----CCcccCcEEEEEcCCCceEEeeeCcccccCcc
Q 010847            4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR----NGRFLSDVQVFDLRSLAWSNLRLETELDADKT   71 (499)
Q Consensus         4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~----~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~   71 (499)
                      +.++|||.+++|..++   ++|.+|++        +|||+||..    +...++++++||+.+++|+.++++        
T Consensus        20 ~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~--------   88 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--------   88 (288)
T ss_dssp             CEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--------
T ss_pred             eEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccc--------
Confidence            4568999999999998   68888987        999999963    235678999999999999998876        


Q ss_pred             ccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcC
Q 010847           72 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG  151 (499)
Q Consensus        72 ~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG  151 (499)
                              |.+|.+|++++++++||++||...... .+.++.||+.++.|....   .+|.+|.+|+++.+++++|++||
T Consensus        89 --------p~~r~~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~GG  156 (288)
T d1zgka1          89 --------SVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGG  156 (288)
T ss_dssp             --------SSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECC
T ss_pred             --------cceecceeccccceeeEEecceecccc-cceeeeeccccCcccccc---ccccccccceeeeeeecceEecC
Confidence                    468999999999999999999876554 678999999999999886   78889999999999999999999


Q ss_pred             cCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCC
Q 010847          152 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  231 (499)
Q Consensus       152 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  231 (499)
                      ..... ..++++.||+.+++|....   ..+.++..++++.+++ .|+++||......+++.+.||+.+++|..+   .+
T Consensus       157 ~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~---~~  228 (288)
T d1zgka1         157 FDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFV---AP  228 (288)
T ss_dssp             BCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETT-EEEEECCBCSSSBCCCEEEEETTTTEEEEC---CC
T ss_pred             ccccc-ccceEEEeecccccccccc---ccccccccccccceee-eEEEecCccccccccceeeeeecceeeecc---cC
Confidence            87654 4778999999999999876   4667888888888855 599999998888899999999999999997   57


Q ss_pred             CCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCce
Q 010847          232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV  292 (499)
Q Consensus       232 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~  292 (499)
                      .|.+|..|+++.++++|||+||.+....++++++||+.+++|+.++.+|    .+|.+|++
T Consensus       229 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p----~~R~~~~~  285 (288)
T d1zgka1         229 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT----SGRSGVGV  285 (288)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----SCCBSCEE
T ss_pred             ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC----CCcEeEEE
Confidence            8899999999999999999999988888899999999999999998774    45666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.2e-28  Score=243.11  Aligned_cols=279  Identities=15%  Similarity=0.172  Sum_probs=193.4

Q ss_pred             CCCCCeEEcccCCCCCCcccc--------eEEEEcCCCCCcc------cCcEEEEEcCCCceEEeeeCcccccCccccCC
Q 010847           10 LPYDLWVTLPVSGARPSPRYK--------KLYIVGGSRNGRF------LSDVQVFDLRSLAWSNLRLETELDADKTEDSG   75 (499)
Q Consensus        10 ~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~------~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~   75 (499)
                      |..++|...+   +.|..|..        +||+|||+.....      +..+++||+.+++|+..+++..          
T Consensus         6 p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------   72 (387)
T d1k3ia3           6 PGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------   72 (387)
T ss_dssp             TTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------
T ss_pred             CCCCccCCcC---CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC----------
Confidence            7889999877   44544433        9999999854332      3357899999999998877642          


Q ss_pred             CCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcC
Q 010847           76 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGED  153 (499)
Q Consensus        76 ~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~  153 (499)
                          |..+..++.+.. +++||++||...     +++++||+.+++|...+   .+|.+|.+|+++++ ++++|++||..
T Consensus        73 ----~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          73 ----KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             ----SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             ----CcccceeEEEEecCCcEEEeecCCC-----cceeEecCccCcccccc---cccccccccceeeecCCceeeecccc
Confidence                223334443333 688999998653     45899999999999887   89999999999887 56999999988


Q ss_pred             CCCCccCcEEEEECCCCeeEEeeecCCCCCCCc-------------------c-------c-------------------
Q 010847          154 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY-------------------D-------H-------------------  188 (499)
Q Consensus       154 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~-------------------~-------~-------------------  188 (499)
                      ......+++++||+.+++|..+......+....                   +       +                   
T Consensus       141 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~  220 (387)
T d1k3ia3         141 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  220 (387)
T ss_dssp             CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             ccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccc
Confidence            777788999999999999998864321110000                   0       0                   


Q ss_pred             --------------eEEEE--cCcEEEEEcCCCCCC---CCCcEEEEEC-----CCCceEecccCCCCCCcCcccEEEEE
Q 010847          189 --------------SAALH--ANRYLIVFGGCSHSI---FFNDLHVLDL-----QTNEWSQPEIKGDLVTGRAGHAGITI  244 (499)
Q Consensus       189 --------------~~~~~--~~~~l~v~GG~~~~~---~~~~i~~~d~-----~~~~W~~~~~~~~~p~~r~~~~~~~~  244 (499)
                                    ..+.+  .++++|+|||.....   .......++.     ....|..+   ..+|.+|..|+++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~r~~~~~~~~  297 (387)
T d1k3ia3         221 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLYFARTFHTSVVL  297 (387)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCSSCCBSCEEEEC
T ss_pred             cccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec---cccccccccceeeec
Confidence                          00011  135688898865332   1222333332     33446554   678999999998888


Q ss_pred             -CCEEEEEeCCCCC------CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC-C---CC
Q 010847          245 -DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-G---KY  313 (499)
Q Consensus       245 -~~~l~v~GG~~~~------~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-~---~~  313 (499)
                       +++|||+||....      ...+.+++||+.+++|+.+++++    .+|.+|+.+++..++  .|||+||.. +   ..
T Consensus       298 ~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~----~~R~~Hs~a~l~~dG--~v~v~GG~~~~~~~~~  371 (387)
T d1k3ia3         298 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS----IVRVYHSISLLLPDG--RVFNGGGGLCGDCTTN  371 (387)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS----SCCCTTEEEEECTTS--CEEEEECCCCTTCSCC
T ss_pred             cCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC----CcccceEEEEECCCC--EEEEEeCCCcCCCCcc
Confidence             5699999996432      22456899999999999997663    457777654433344  588889852 2   13


Q ss_pred             CceEEEEEC
Q 010847          314 NNEVFVMRL  322 (499)
Q Consensus       314 ~~~~~~~~~  322 (499)
                      ..++.+|++
T Consensus       372 ~~~~e~y~P  380 (387)
T d1k3ia3         372 HFDAQIFTP  380 (387)
T ss_dssp             CCEEEEEEC
T ss_pred             cceEEEEcc
Confidence            567888986

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=2.3e-24  Score=211.94  Aligned_cols=239  Identities=13%  Similarity=0.142  Sum_probs=170.4

Q ss_pred             ccccCCCCCeEEcccCCCCCCccc---------ceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCC
Q 010847            6 WHLELPYDLWVTLPVSGARPSPRY---------KKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   76 (499)
Q Consensus         6 ~~~~~~~~~W~~~~~~~~~p~~r~---------~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~   76 (499)
                      +.|||.+++|..++... .|..+.         ++||++||...    +.+.+||+.+++|...+.+             
T Consensus        55 ~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~-------------  116 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDM-------------  116 (387)
T ss_dssp             EEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCC-------------
T ss_pred             EEEECCCCcEeecCCCC-CCcccceeEEEEecCCcEEEeecCCC----cceeEecCccCcccccccc-------------
Confidence            57999999999876432 222222         28999998643    5689999999999998776             


Q ss_pred             CCCCCCccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCC-------------------------
Q 010847           77 LEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV-------------------------  130 (499)
Q Consensus        77 ~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~-------------------------  130 (499)
                         |.+|.+|+++++ +++||++||........+++++||+.+++|+.++.....                         
T Consensus       117 ---~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  193 (387)
T d1k3ia3         117 ---QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG  193 (387)
T ss_dssp             ---SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG
T ss_pred             ---cccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC
Confidence               458999999888 579999999877766678899999999999987532100                         


Q ss_pred             -----------------------------------CCCCcceEEEE--ECCEEEEEcCcCCCCC--ccCcEEEEECC--C
Q 010847          131 -----------------------------------PVARGGHSVTL--VGSRLIIFGGEDRSRK--LLNDVHFLDLE--T  169 (499)
Q Consensus       131 -----------------------------------p~~r~~~~~~~--~~~~lyv~GG~~~~~~--~~~~v~~yd~~--t  169 (499)
                                                         +..+.++++..  .++++|+|||......  .......++..  .
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~  273 (387)
T d1k3ia3         194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG  273 (387)
T ss_dssp             CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred             CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccc
Confidence                                               01111222222  2578999999754332  12233333332  2


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC------CCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  243 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  243 (499)
                      ..|........+|.+|..|+++.+.|++|||+||...      ....+.+++||+.+++|+.+   ++++.+|..|++++
T Consensus       274 ~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~---~~~~~~R~~Hs~a~  350 (387)
T d1k3ia3         274 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ---NPNSIVRVYHSISL  350 (387)
T ss_dssp             SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC---CCCSSCCCTTEEEE
T ss_pred             cCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC---CCCCCcccceEEEE
Confidence            2222333335789999999999997777999999742      24566789999999999997   67899999999887


Q ss_pred             E--CCEEEEEeCCCCCC---CcceEEEEEC
Q 010847          244 I--DENWYIVGGGDNNN---GCQETIVLNM  268 (499)
Q Consensus       244 ~--~~~l~v~GG~~~~~---~~~~~~~~d~  268 (499)
                      +  ++++||+||.....   ...++.+|||
T Consensus       351 l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P  380 (387)
T d1k3ia3         351 LLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  380 (387)
T ss_dssp             ECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             ECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence            7  77999999964332   2457889886

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.15  Score=45.00  Aligned_cols=181  Identities=15%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  190 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~  190 (499)
                      +..+|+....-....   ..  ......+...++..++.|+.+      ..+.+||+.+.+-..... +    ......+
T Consensus       159 i~~~d~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~s~~~d------g~i~~~d~~~~~~~~~~~-~----~~~~v~~  222 (342)
T d2ovrb2         159 VKVWDPETETCLHTL---QG--HTNRVYSLQFDGIHVVSGSLD------TSIRVWDVETGNCIHTLT-G----HQSLTSG  222 (342)
T ss_dssp             EEEEEGGGTEEEEEE---CC--CSSCEEEEEECSSEEEEEETT------SCEEEEETTTCCEEEEEC-C----CCSCEEE
T ss_pred             EEEeecccceeeEEE---cC--cccccccccCCCCEEEEEeCC------CeEEEeecccceeeeEec-c----cccceeE
Confidence            777777665432221   11  112233444566666677654      358899988766433321 1    1112233


Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCC
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +...++ +++.|+.+     +.+.+||+.+..-...-  ...............++.+++.|+.++     .+.+||+.+
T Consensus       223 ~~~~~~-~l~s~s~d-----~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~s~Dg-----~i~iwd~~t  289 (342)
T d2ovrb2         223 MELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL--QGPNKHQSAVTCLQFNKNFVITSSDDG-----TVKLWDLKT  289 (342)
T ss_dssp             EEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE--CSTTSCSSCEEEEEECSSEEEEEETTS-----EEEEEETTT
T ss_pred             EecCCC-EEEEEcCC-----CEEEEEecccccccccc--cccceeeeceeecccCCCeeEEEcCCC-----EEEEEECCC
Confidence            444566 56666644     46899998776543321  111112222233445667777777443     478899988


Q ss_pred             CceE-EeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          271 LAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       271 ~~W~-~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ++.. .+.....    ..+......+....+..+++.|+.++.....++++|++.
T Consensus       290 g~~i~~~~~~~~----~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         290 GEFIRNLVTLES----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CCEEEEEEECTT----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEecccC----CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            7643 2222111    011112333444555678888988876667788888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.62  E-value=0.19  Score=43.66  Aligned_cols=103  Identities=18%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      ++||.+..+     +.|.++|+.+++....-+..                  ...+.++..  +.+||+.++..      
T Consensus         3 ~~yV~~~~~-----~~v~v~D~~t~~~~~~i~~g------------------~~p~~va~spdG~~l~v~~~~~------   53 (301)
T d1l0qa2           3 FAYIANSES-----DNISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------   53 (301)
T ss_dssp             EEEEEETTT-----TEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------
T ss_pred             EEEEEECCC-----CEEEEEECCCCeEEEEEECC------------------CCceEEEEeCCCCEEEEEECCC------
Confidence            577776532     25889999999876543332                  112333333  45788776542      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEEEEECCCCeeE
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWD  173 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~  173 (499)
                      +.+.+||+.++.-...-     +....-+.++.. + ..+++.+..      ...+..++..+.+..
T Consensus        54 ~~i~v~d~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          54 NDVSIIDTATNNVIATV-----PAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVA  109 (301)
T ss_dssp             TEEEEEETTTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCceeeee-----eccccccccccccccccccccccc------cceeeecccccceee
Confidence            35999999988643332     111122333332 2 345554332      224666677666543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.36  Score=43.05  Aligned_cols=185  Identities=16%  Similarity=0.062  Sum_probs=88.5

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      ..++.|+.+     ..+.+||+...+.........                .........+  ++.+++.|+.+      
T Consensus       110 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~s~~~d------  162 (337)
T d1gxra_         110 CTLIVGGEA-----STLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSD------  162 (337)
T ss_dssp             SEEEEEESS-----SEEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETT------
T ss_pred             CEEEEeecc-----ccccccccccccccccccccc----------------ccccccccccccccccccccccc------
Confidence            444555532     247888888766655444321                0111112222  34555555532      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      ..+..+|..++.-....   ..... .-.+++. .++..++.|+.+      +.+.+||+.+.+-.....   .+.+  -
T Consensus       163 ~~i~~~~~~~~~~~~~~---~~~~~-~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~---~~~~--i  227 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQF---QGHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---FTSQ--I  227 (337)
T ss_dssp             SCEEEEETTTTEEEEEE---CCCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CSSC--E
T ss_pred             ccccccccccccccccc---ccccc-cccccccccccccccccccc------ccccccccccceeecccc---cccc--e
Confidence            23888998887654433   11111 1112222 244566666543      358899988765322211   1111  1


Q ss_pred             ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEE
Q 010847          188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL  266 (499)
Q Consensus       188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~  266 (499)
                      .+++...++..++.|+.+     ..+.+||+.+..-....  .  ... .-.+++.. ++..++.|+.++     .+.+|
T Consensus       228 ~~l~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~--~~~-~i~~v~~s~~g~~l~s~s~Dg-----~i~iw  292 (337)
T d1gxra_         228 FSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH--L--HES-CVLSLKFAYCGKWFVSTGKDN-----LLNAW  292 (337)
T ss_dssp             EEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC--C--CSS-CEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred             EEEEEcccccccceeccc-----ccccccccccccccccc--c--ccc-ccceEEECCCCCEEEEEeCCC-----eEEEE
Confidence            222223344456666643     35889998776543321  1  011 11122222 456666666432     47788


Q ss_pred             ECCCCc
Q 010847          267 NMTKLA  272 (499)
Q Consensus       267 d~~~~~  272 (499)
                      |..+..
T Consensus       293 d~~~~~  298 (337)
T d1gxra_         293 RTPYGA  298 (337)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            877664

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.18  E-value=0.38  Score=42.54  Aligned_cols=150  Identities=13%  Similarity=0.058  Sum_probs=72.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  168 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~  168 (499)
                      ++..++.+|.....    .+.+++..+.+-..     .+.........+.+   +..+++.|+.+      ..+.+||..
T Consensus       113 d~~~l~~~~~~~~~----~~~v~~~~~~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d------~~i~i~d~~  177 (311)
T d1nr0a1         113 ESKRIAAVGEGRER----FGHVFLFDTGTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDD------NTVAIFEGP  177 (311)
T ss_dssp             TSCEEEEEECCSSC----SEEEEETTTCCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETT------SCEEEEETT
T ss_pred             cccccccccccccc----cccccccccccccc-----cccccccccccccccccceeeecccccc------ccccccccc
Confidence            35555555533222    26677776654211     11111111222333   23456666643      358899998


Q ss_pred             CCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc----EEEE
Q 010847          169 TMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGIT  243 (499)
Q Consensus       169 t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~  243 (499)
                      +.+-.....  .   ....-.++.+ .++.+++.|+.+     +.+.+||+.+..-...-  ........+|    ..+.
T Consensus       178 ~~~~~~~~~--~---~~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~~~~~~~~~~--~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         178 PFKFKSTFG--E---HTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVF--EDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             TBEEEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEC--BCTTSSSCSSSSCEEEEE
T ss_pred             ccccccccc--c---ccccccccccCcccccccccccc-----ccccccccccccccccc--cccccccccccccccccc
Confidence            866433321  1   1112223333 344466666654     35888998766533211  1111111111    1222


Q ss_pred             E--CCEEEEEeCCCCCCCcceEEEEECCCCce
Q 010847          244 I--DENWYIVGGGDNNNGCQETIVLNMTKLAW  273 (499)
Q Consensus       244 ~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  273 (499)
                      +  ++..++.||.++     .+.+||+.++.-
T Consensus       246 ~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~  272 (311)
T d1nr0a1         246 WSPDGTKIASASADK-----TIKIWNVATLKV  272 (311)
T ss_dssp             ECTTSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred             cCCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence            3  456677776433     478899888764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.96  E-value=0.55  Score=42.45  Aligned_cols=151  Identities=10%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .++++|+.+     ..+.+||..++++..+..+..+               ...-.+++.. +++.++.||.+.      
T Consensus        20 ~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH---------------~~~V~~l~fsp~~~~l~s~s~D~------   73 (371)
T d1k8kc_          20 TQIAICPNN-----HEVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTDR------   73 (371)
T ss_dssp             SEEEEECSS-----SEEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETTS------
T ss_pred             CEEEEEeCC-----CEEEEEECCCCCEEEEEEecCC---------------CCCEEEEEECCCCCEEEEEECCC------
Confidence            667777642     2488999999999887765321               1111222222 445556666432      


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  187 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~  187 (499)
                      .+.++|+.++.|.....   .........++.+  +++.++.|+.+.    .-.++.++.....+.......   ..+..
T Consensus        74 ~i~vWd~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~---~~~~~  143 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKK---PIRST  143 (371)
T ss_dssp             CEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECT---TCCSC
T ss_pred             eEEEEeecccccccccc---cccccccccccccccccccceeecccC----cceeeeeeccccccccccccc---ccccc
Confidence            38889999999987653   2222222233333  455555555332    223555665666565444321   12222


Q ss_pred             ceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          188 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       188 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      -.++.+ .++.+++.|+.++     .+.+||+....
T Consensus       144 v~~v~~~p~~~~l~s~s~D~-----~v~v~~~~~~~  174 (371)
T d1k8kc_         144 VLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIKE  174 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTS-----CEEEEECCCTT
T ss_pred             cccccccccccceeccccCc-----EEEEEeeccCc
Confidence            223333 3555667776542     46777765543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.96  E-value=0.49  Score=41.80  Aligned_cols=195  Identities=15%  Similarity=0.105  Sum_probs=92.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++.+++.|+.++      .+.+||+.+........   ++.....-.++.+  ++..++.+|.+..    ..+.+++..+
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKTT---IPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEEE---EECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeeccccccccc---cccccCcccccccccccccccccccccc----cccccccccc
Confidence            466667777543      48889988876533221   1110111122223  3555555554322    2466777766


Q ss_pred             CeeEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CC
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE  246 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~  246 (499)
                      .+-..     .+.........+.+.  +.++++.|+.+     ..+.+||..+......-  ..  ....-.++... ++
T Consensus       136 ~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~--~~--~~~~i~~v~~~p~~  201 (311)
T d1nr0a1         136 GTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTF--GE--HTKFVHSVRYNPDG  201 (311)
T ss_dssp             CCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEE--CC--CSSCEEEEEECTTS
T ss_pred             ccccc-----cccccccccccccccccceeeecccccc-----ccccccccccccccccc--cc--ccccccccccCccc
Confidence            54211     111111122233332  34456667654     35889998876543321  11  11111222222 44


Q ss_pred             EEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCc--eEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847          247 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       247 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      .+++.|+.++     .+.+||..+..-...  +.... ....+|.  ...+....+..+++.||.++    .+.++|+.+
T Consensus       202 ~~l~~~~~d~-----~v~~~d~~~~~~~~~--~~~~~-~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----~v~iwd~~t  269 (311)
T d1nr0a1         202 SLFASTGGDG-----TIVLYNGVDGTKTGV--FEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVAT  269 (311)
T ss_dssp             SEEEEEETTS-----CEEEEETTTCCEEEE--CBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTT
T ss_pred             cccccccccc-----ccccccccccccccc--ccccc-cccccccccccccccCCCCCEEEEEeCCC----eEEEEECCC
Confidence            6666666433     477888877654332  21111 1112222  23333333223455677655    688888765


Q ss_pred             C
Q 010847          325 R  325 (499)
Q Consensus       325 ~  325 (499)
                      .
T Consensus       270 ~  270 (311)
T d1nr0a1         270 L  270 (311)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.36  E-value=0.34  Score=42.07  Aligned_cols=112  Identities=12%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          194 ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       194 ~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      .++.+++.|+.+     ..+..||+.+.....+....   ....-.+++.. ++..++.|+.+.     .+.+||+.++.
T Consensus       146 ~~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~  212 (299)
T d1nr0a2         146 NDKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQSR-----KVIPYSVANNF  212 (299)
T ss_dssp             TTSCEEEEEETT-----SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETTS-----CEEEEEGGGTT
T ss_pred             cccccccccccc-----cccccccccccccccccccc---cccccccccccccccccccccccc-----ccccccccccc
Confidence            455567777654     46889998877655432211   11111122222 345566665432     47899987765


Q ss_pred             eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847          273 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  327 (499)
Q Consensus       273 W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W  327 (499)
                      .......     ...+......+....+..+++.||.++    .+.++|+.....
T Consensus       213 ~~~~~~~-----~~~h~~~v~~l~~s~~~~~l~sgs~dg----~i~iwd~~~~~~  258 (299)
T d1nr0a2         213 ELAHTNS-----WTFHTAKVACVSWSPDNVRLATGSLDN----SVIVWNMNKPSD  258 (299)
T ss_dssp             EESCCCC-----CCCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTCTTS
T ss_pred             ccccccc-----ccccccccccccccccccceEEEcCCC----EEEEEECCCCCc
Confidence            4322111     011112222333333334566677665    688888876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.25  E-value=0.5  Score=42.75  Aligned_cols=114  Identities=13%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++++++.|+.+      ..+.+||..++.+..+........+.  .+++.. ++++++.||.+      ..+.++|+.+.
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH~~~V--~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~   83 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQV--TGVDWAPDSNRIVTCGTD------RNAYVWTLKGR   83 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCE--EEEEEETTTTEEEEEETT------SCEEEEEEETT
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCCCCCE--EEEEECCCCCEEEEEECC------CeEEEEeeccc
Confidence            45566666542      34889999999888776321111111  122222 45555666643      25888999899


Q ss_pred             eeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  225 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  225 (499)
                      .|.......   ........+.+ .++..++.|+.++.   -.+|.++.....+..
T Consensus        84 ~~~~~~~~~---~~~~~v~~i~~~p~~~~l~~~s~d~~---i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          84 TWKPTLVIL---RINRAARCVRWAPNEKKFAVGSGSRV---ISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEEEECC---CCSSCEEEEEECTTSSEEEEEETTSS---EEEEEEETTTTEEEE
T ss_pred             ccccccccc---cccccccccccccccccceeecccCc---ceeeeeecccccccc
Confidence            988665421   12222333333 34445666654321   235555555554544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=1  Score=40.31  Aligned_cols=199  Identities=15%  Similarity=0.108  Sum_probs=87.3

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  170 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~  170 (499)
                      ++++++.|+.++      .+.++|..++.......   ..... -.++... ++..++.|+.      ...+..+|..+.
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~---~h~~~-v~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~  195 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ---GHEQD-IYSLDYFPSGDKLVSGSG------DRTVRIWDLRTG  195 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTT
T ss_pred             CCCcceeccccc------ccccccccccccccccc---ccccc-cccccccccccccccccc------ceeeeeeecccc
Confidence            455666776533      38889988887655531   11111 1112222 3344455543      235888888876


Q ss_pred             eeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEec-ccCCCCCCc-Ccc-cEEEEE-C
Q 010847          171 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EIKGDLVTG-RAG-HAGITI-D  245 (499)
Q Consensus       171 ~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~-~~~~~~p~~-r~~-~~~~~~-~  245 (499)
                      .-......     ......+... .++.+++.|+.+     +.+.+||..+...... ......... ... .+++.. +
T Consensus       196 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         196 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             cccccccc-----ccccccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            65444321     1111222222 244567777654     3588999887764432 111111111 111 122222 3


Q ss_pred             CEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCC----CCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEE
Q 010847          246 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  321 (499)
Q Consensus       246 ~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~----p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  321 (499)
                      +..++.|+.++     .+.+||+.+.........+...    ....+......+....+..+++.|+.++    .+.+||
T Consensus       266 ~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg----~i~vwd  336 (388)
T d1erja_         266 GQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFWD  336 (388)
T ss_dssp             SSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEEE
T ss_pred             CCEEEEEECCC-----cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC----EEEEEE
Confidence            45666666432     4667776554322111111000    0000111222233333334555676655    688888


Q ss_pred             CCCC
Q 010847          322 LKPR  325 (499)
Q Consensus       322 ~~~~  325 (499)
                      +...
T Consensus       337 ~~~~  340 (388)
T d1erja_         337 KKSG  340 (388)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.98  E-value=0.6  Score=40.84  Aligned_cols=92  Identities=13%  Similarity=0.067  Sum_probs=48.7

Q ss_pred             cEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCc
Q 010847          212 DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS  291 (499)
Q Consensus       212 ~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~  291 (499)
                      .+..+|..+..+.....   .+.......+....+..+++++      .+.+.++|+.+.........+..        .
T Consensus       220 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~~~--------~  282 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNASIKRVPLPHS--------Y  282 (337)
T ss_dssp             EEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEEEEEEECSSC--------C
T ss_pred             cEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc------cccEEEEECCCCcEEEEEcCCCC--------E
Confidence            47788888777665422   2233333333333443333433      13688999998876554332211        1


Q ss_pred             eEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          292 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       292 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+.+...+..+||+ |+.++    .+.+||..+.
T Consensus       283 ~~~~~s~dG~~l~v-~~~~~----~i~v~D~~t~  311 (337)
T d1pbyb_         283 YSVNVSTDGSTVWL-GGALG----DLAAYDAETL  311 (337)
T ss_dssp             CEEEECTTSCEEEE-ESBSS----EEEEEETTTC
T ss_pred             EEEEECCCCCEEEE-EeCCC----cEEEEECCCC
Confidence            12222333446665 55543    7899998753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.97  E-value=0.26  Score=43.89  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             CccccCCCCCeEEcccCCCCCCcccc---eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCC
Q 010847            5 SWHLELPYDLWVTLPVSGARPSPRYK---KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP   81 (499)
Q Consensus         5 ~~~~~~~~~~W~~~~~~~~~p~~r~~---~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~   81 (499)
                      .|.+|...+...+++..+..-..++.   +..+++|...+   ..++++|..++.-..+....                 
T Consensus        26 v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~-----------------   85 (360)
T d1k32a3          26 AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENL-----------------   85 (360)
T ss_dssp             EEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCC-----------------
T ss_pred             EEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCC-----------------
Confidence            36678888888887644433333333   44444443322   23889999998876654321                 


Q ss_pred             CccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC----C
Q 010847           82 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS----R  156 (499)
Q Consensus        82 ~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~----~  156 (499)
                       ..-.+++.. +++.+++++.      ...++.++..++....+.   ..........+..-+++.+++++....    .
T Consensus        86 -~~v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          86 -GNVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIE---RSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             -CSEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             -ceEEeeeecccccccceecc------ccccccccccccceeeee---ecccccccchhhccceeeeeeeccccccceee
Confidence             111122222 4445555543      234888999888766554   222222222233335555555432221    1


Q ss_pred             CccCcEEEEECCCCeeE
Q 010847          157 KLLNDVHFLDLETMTWD  173 (499)
Q Consensus       157 ~~~~~v~~yd~~t~~W~  173 (499)
                      .....++.+|..+..=.
T Consensus       156 ~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             CCEEEEEEEETTTTEEE
T ss_pred             ccccceeeeccccCcee
Confidence            12446788998887543

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.83  Score=37.24  Aligned_cols=154  Identities=13%  Similarity=0.080  Sum_probs=83.2

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC---CCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcE
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDV  162 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v  162 (499)
                      +++.+++.+|+|-|.        -+|+++.....+.....+   ..+|.. ..++... .++.+|+|-|.        .+
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~-IDAAf~~~~~~~~yffkg~--------~~   75 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR-IDAAYEHPSHDLIFIFRGR--------KF   75 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS-CCEEEEETTTTEEEEEETT--------EE
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCc-ccceEEEcCCCEEEEEcCC--------EE
Confidence            567789999999763        277777655545443322   123432 2222222 25788888663        46


Q ss_pred             EEEECCCCeeEEeeecC--CCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccC-CCC
Q 010847          163 HFLDLETMTWDAVEVTQ--TPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-GDL  232 (499)
Q Consensus       163 ~~yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-~~~  232 (499)
                      |+|+..+...-.+....  .+|.+...-.++..  .++.+|+|-|       +..|+||..++.-..     +... +..
T Consensus        76 w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~gv  148 (192)
T d1pexa_          76 WALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGI  148 (192)
T ss_dssp             EEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTS
T ss_pred             EEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCCC
Confidence            77765443332111111  12222222223332  3678999987       468999977654221     1110 112


Q ss_pred             CCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCce
Q 010847          233 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  273 (499)
Q Consensus       233 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  273 (499)
                      |. . -.++...++.+|+|-|.       ..|+||..+.+-
T Consensus       149 p~-~-vdAa~~~~g~~YfF~g~-------~y~r~~~~~~~v  180 (192)
T d1pexa_         149 GD-K-VDAVYEKNGYIYFFNGP-------IQFEYSIWSNRI  180 (192)
T ss_dssp             CS-C-CSEEEEETTEEEEEETT-------EEEEEETTTTEE
T ss_pred             CC-C-ceEEEEeCCEEEEEECC-------EEEEEeCCcCeE
Confidence            22 2 23445568899999772       678999877653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.19  E-value=2.6  Score=40.51  Aligned_cols=124  Identities=14%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             eeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecC-----CCCCCCCcceEEEEECCEEEEEcCcCCCCCc
Q 010847           86 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETS-----GKVPVARGGHSVTLVGSRLIIFGGEDRSRKL  158 (499)
Q Consensus        86 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~-----g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~  158 (499)
                      .+-+++++.||+..+       ...++.+|..|+  .|+.-+..     ............+..+++||+...       
T Consensus        60 stPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             eCCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            455788999998765       345999999988  48743210     011112223345666888877633       


Q ss_pred             cCcEEEEECCCCe--eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCc--eEec
Q 010847          159 LNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       159 ~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ...++.+|..+.+  |.....  .........+...+.++ .+++|+.. .......|..||..|++  |+.-
T Consensus       126 ~g~l~Alda~tG~~~w~~~~~--~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         126 DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCcEEeccCcc--CcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence            2358999988864  654432  22222222222233366 44555432 22334569999999886  7764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=2.4  Score=37.75  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeee-cCCCCC-CC
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV-TQTPPA-PR  185 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~p~-~r  185 (499)
                      .+..+|..+..-.....   ...  ...+++..  ++.+++.|+.+      +.+.+||..+........ ...... ..
T Consensus       186 ~i~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~h~  254 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLS---IED--GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHK  254 (388)
T ss_dssp             EEEEEETTTTEEEEEEE---CSS--CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCS
T ss_pred             eeeeeeccccccccccc---ccc--ccccccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccccccCCC
Confidence            48888888776544431   111  11222222  45667776643      358899988776533221 111111 11


Q ss_pred             ccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          186 YDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       186 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ..-..+.+ .++..++.|+.+     +.+.+||+.+..
T Consensus       255 ~~v~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~~  287 (388)
T d1erja_         255 DSVYSVVFTRDGQSVVSGSLD-----RSVKLWNLQNAN  287 (388)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SEEEEEEC----
T ss_pred             CCEEEEEECCCCCEEEEEECC-----CcEEEEeccCCc
Confidence            11122233 344456666644     357888876554

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=1.6  Score=35.54  Aligned_cols=150  Identities=11%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE--eecC---CCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccC
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV--METS---GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN  160 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~--~~~~---g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~  160 (499)
                      +++.+++.+|+|-|.        -+|+|+........  ...+   ..+|.. ...+... .++++|+|-|.        
T Consensus        11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg~--------   73 (195)
T d1itva_          11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSGR--------   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEETT--------
T ss_pred             eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEecC--------
Confidence            466789999999773        27777654333221  1111   123322 2222222 25689998553        


Q ss_pred             cEEEEECCCCeeEEeeecC--CCCCCCccce-EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccC-CC
Q 010847          161 DVHFLDLETMTWDAVEVTQ--TPPAPRYDHS-AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-GD  231 (499)
Q Consensus       161 ~v~~yd~~t~~W~~~~~~~--~~p~~r~~~~-~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-~~  231 (499)
                      .+++|+-..  ...+....  .+|.....-. +....++++|+|=|       +..|+||..++.-..     +... ..
T Consensus        74 ~~~~y~~~~--~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~g  144 (195)
T d1itva_          74 QVWVYTGAS--VLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG  144 (195)
T ss_dssp             EEEEEETTE--EEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred             EEEEEcCcc--ccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCC
Confidence            478887432  22222211  1232222222 33334678999977       368999987764222     1100 11


Q ss_pred             CCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847          232 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  271 (499)
Q Consensus       232 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  271 (499)
                      +|  ..-.++...++.+|+|-|.       ..|+||..+.
T Consensus       145 vp--~~idaAf~~~~~~Yffkg~-------~y~r~~~~~~  175 (195)
T d1itva_         145 VP--LDTHDVFQFREKAYFCQDR-------FYWRVSSRSE  175 (195)
T ss_dssp             SC--SSCSEEEEETTEEEEEETT-------EEEEEECCTT
T ss_pred             CC--CCCcEEEEeCCcEEEEECC-------EEEEEcCCce
Confidence            22  2334566678899999773       5688886554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=2.4  Score=36.46  Aligned_cols=157  Identities=13%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847           88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  167 (499)
Q Consensus        88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~  167 (499)
                      ....++..++.|+.++      .+..||+.+..-....   ...  .....++..++.+++.|+.+      ..+.+||.
T Consensus       182 ~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~---~~~--~~~v~~~~~~~~~l~s~s~d------~~i~iwd~  244 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTL---TGH--QSLTSGMELKDNILVSGNAD------STVKIWDI  244 (342)
T ss_dssp             EEEECSSEEEEEETTS------CEEEEETTTCCEEEEE---CCC--CSCEEEEEEETTEEEEEETT------SCEEEEET
T ss_pred             cccCCCCEEEEEeCCC------eEEEeecccceeeeEe---ccc--ccceeEEecCCCEEEEEcCC------CEEEEEec
Confidence            3344566666666533      3888998887644332   111  11122334445556666643      35899998


Q ss_pred             CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcCc-ccEEEEEC
Q 010847          168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRA-GHAGITID  245 (499)
Q Consensus       168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~-~~~~~~~~  245 (499)
                      .+.+-...-.  ..........+...+++ +++.|+.+     ..|.+||+.+++... +.. ...+.... -.+++..+
T Consensus       245 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~s~s~D-----g~i~iwd~~tg~~i~~~~~-~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         245 KTGQCLQTLQ--GPNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLVT-LESGGSGGVVWRIRASN  315 (342)
T ss_dssp             TTCCEEEEEC--STTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEEE-CTTGGGTCEEEEEEECS
T ss_pred             cccccccccc--ccceeeeceeecccCCC-eeEEEcCC-----CEEEEEECCCCCEEEEEec-ccCCCCCCCEEEEEECC
Confidence            7765433321  11222333334445455 66677654     368999998876532 211 11111111 11223334


Q ss_pred             CEEEEEeCCCCCCCcceEEEEECCC
Q 010847          246 ENWYIVGGGDNNNGCQETIVLNMTK  270 (499)
Q Consensus       246 ~~l~v~GG~~~~~~~~~~~~~d~~~  270 (499)
                      +..+++.|..+......++++|+..
T Consensus       316 ~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         316 TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            4444444433333334678888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=2.9  Score=36.61  Aligned_cols=186  Identities=16%  Similarity=0.070  Sum_probs=89.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      ++..++.|+.+      ..+.+||+..........   ++..........+  ++.+++.|+.+      ..+..+|..+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccc---cccccccccccccccccccccccccc------cccccccccc
Confidence            45566667653      348889988776554431   1111111222222  34555555432      3588899888


Q ss_pred             CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN  247 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~  247 (499)
                      .+-.....  .   ......++.+ .++..++.|+.+     +.+.+||+.+..-....   ...  ..-.+++.. ++.
T Consensus       173 ~~~~~~~~--~---~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~---~~~--~~i~~l~~~~~~~  237 (337)
T d1gxra_         173 QTLVRQFQ--G---HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGE  237 (337)
T ss_dssp             TEEEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSS
T ss_pred             cccccccc--c---ccccccccccccccccccccccc-----ccccccccccceeeccc---ccc--cceEEEEEccccc
Confidence            76443321  1   1111222233 344466666643     46888998776532211   011  111222222 345


Q ss_pred             EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      .+++|+.++     .+.+||+.+..-......         ......+....+..+++.|+.++    .+.+||....
T Consensus       238 ~l~~~~~d~-----~i~i~d~~~~~~~~~~~~---------~~~i~~v~~s~~g~~l~s~s~Dg----~i~iwd~~~~  297 (337)
T d1gxra_         238 WLAVGMESS-----NVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG  297 (337)
T ss_dssp             EEEEEETTS-----CEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred             ccceecccc-----cccccccccccccccccc---------ccccceEEECCCCCEEEEEeCCC----eEEEEECCCC
Confidence            666666432     478888877654332211         11122233333223455566654    5777887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.25  E-value=3.2  Score=35.97  Aligned_cols=191  Identities=11%  Similarity=-0.036  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ..++.||+.++.-+.....                  ...+..+..-++.+++...        +.+..||+.+++++.+
T Consensus        40 ~~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          40 RELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLH   93 (295)
T ss_dssp             TEEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCeEEEEECC------------------CCcEEEEEecCCCEEEEEe--------CccEEeecccceeeEE
Confidence            4689999999876655431                  1223333334677776531        2499999999999888


Q ss_pred             ecC-CCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847          125 ETS-GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG  202 (499)
Q Consensus       125 ~~~-g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G  202 (499)
                      ... ...+.-|.+...+.-++.||+---....  ....-..|.+..++...+..  .+  .... ..+.. +++.+|+..
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~--~~~N-g~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DI--SIPN-SICFSPDGTTGYFVD  166 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EE--SSEE-EEEECTTSCEEEEEE
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee--cc--CCcc-eeeecCCCceEEEee
Confidence            631 1122223333333335677764322111  12334555555666665543  11  1111 22222 244456543


Q ss_pred             CCCCCCCCCcEEEEECCCCc--eEe-cccCCCCCCcCccc-EEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847          203 GCSHSIFFNDLHVLDLQTNE--WSQ-PEIKGDLVTGRAGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  277 (499)
Q Consensus       203 G~~~~~~~~~i~~~d~~~~~--W~~-~~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~  277 (499)
                      -     ..+.|++|++....  ... ...-...+...... ++++- ++.++|..-.     ...+.+||+.......+.
T Consensus       167 t-----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-----~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         167 T-----KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             T-----TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEEEEE
T ss_pred             c-----ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC-----CCceEEecCCCcEeeEec
Confidence            2     24579999874321  111 00000011111122 33332 4577776211     125899999877776664


Q ss_pred             c
Q 010847          278 S  278 (499)
Q Consensus       278 ~  278 (499)
                      .
T Consensus       237 l  237 (295)
T d2ghsa1         237 V  237 (295)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.21  E-value=3.3  Score=36.07  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc--CcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          145 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       145 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      .+++.||.+      ..+.+||..+.+-.....  ........-.++.+.  .+.+++.||.+     +.|.+||+.+++
T Consensus       173 ~~~~~~~~d------~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d-----~~i~iwd~~~~~  239 (325)
T d1pgua1         173 MRSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGE  239 (325)
T ss_dssp             CEEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCC
T ss_pred             ceEEEeecc------cccccccccccccceecc--cccCCCCccEEeeeccccceeccccccc-----cceeeeeecccc
Confidence            455656643      257788887655433221  111111112233342  34466666654     358899988776


Q ss_pred             eEe-cccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          223 WSQ-PEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       223 W~~-~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      ... +.. ...+.....++....++..++.|+.+.     .+.+||+.+++-.
T Consensus       240 ~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~~  286 (325)
T d1pgua1         240 FLKYIED-DQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             ccccccc-cccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCEE
Confidence            433 211 111221122233334566777777443     4778899887643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.92  E-value=0.49  Score=40.94  Aligned_cols=134  Identities=11%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      .+.+||+.++..........                 .....++.+  ++..++.|+.++      .+.+||..++....
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVH-----------------PAEITSVAFSNNGAFLVATDQSR------KVIPYSVANNFELA  215 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEEC-----------------SSCEEEEEECTTSSEEEEEETTS------CEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccc-----------------ccccccccccccccccccccccc------cccccccccccccc
Confidence            47888988877665544321                 111122222  344555555432      38999988776433


Q ss_pred             eecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEE-EcCcEEEE
Q 010847          124 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIV  200 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v  200 (499)
                      ...  ..........++.+  ++.+++.||.+      +.+.+||+.+.....+.....  .......++. .+++ .++
T Consensus       216 ~~~--~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~  284 (299)
T d1nr0a2         216 HTN--SWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNET-TIV  284 (299)
T ss_dssp             CCC--CCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETT-EEE
T ss_pred             ccc--cccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceEEEecC--CCCCcEEEEEECCCC-EEE
Confidence            221  12111122222233  45677777754      358999988765543332211  1122222223 3455 566


Q ss_pred             EcCCCCCCCCCcEEEEEC
Q 010847          201 FGGCSHSIFFNDLHVLDL  218 (499)
Q Consensus       201 ~GG~~~~~~~~~i~~~d~  218 (499)
                      .||.+     ..|.++|+
T Consensus       285 s~s~D-----~~i~iWdl  297 (299)
T d1nr0a2         285 SAGQD-----SNIKFWNV  297 (299)
T ss_dssp             EEETT-----SCEEEEEC
T ss_pred             EEeCC-----CEEEEEec
Confidence            66654     24666665

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=2.8  Score=33.96  Aligned_cols=153  Identities=9%  Similarity=-0.001  Sum_probs=83.6

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCC---CCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND  161 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g---~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~  161 (499)
                      +++.+++.+|+|-|..        +|+++.............   .+|... . ++...  ++++|+|-|.        .
T Consensus        16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I-D-AAf~~~~~~~~yfFkG~--------~   77 (195)
T d1su3a2          16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKGN--------K   77 (195)
T ss_dssp             EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc-c-ceEEecCCcEEEEECCc--------E
Confidence            6677899999997742        666665555444333221   233322 1 23323  5789999663        5


Q ss_pred             EEEEECCCCee---EEeee-cCCCCCCCccceEE-EE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccC-
Q 010847          162 VHFLDLETMTW---DAVEV-TQTPPAPRYDHSAA-LH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-  229 (499)
Q Consensus       162 v~~yd~~t~~W---~~~~~-~~~~p~~r~~~~~~-~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-  229 (499)
                      +++|+-.+...   ..+.. .| +|.....--++ .. .++.+|+|-|       +..|+||..+..-..     +... 
T Consensus        78 y~~y~~~~~~~g~p~~i~~~~G-~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w  149 (195)
T d1su3a2          78 YWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDF  149 (195)
T ss_dssp             EEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred             EEEEcCCccccCCCccchhhcC-CCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCccccccccc
Confidence            78887432221   11110 02 23222222222 22 4568999988       468999987764221     1110 


Q ss_pred             CCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE
Q 010847          230 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  274 (499)
Q Consensus       230 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  274 (499)
                      +.+|..  -.++...++++|+|-|.       ..|+||..+..-.
T Consensus       150 ~Gvp~~--iDAAf~~~g~~YfFkg~-------~y~r~~~~~~~v~  185 (195)
T d1su3a2         150 PGIGHK--VDAVFMKDGFFYFFHGT-------RQYKFDPKTKRIL  185 (195)
T ss_dssp             TTSCSC--CSEEEEETTEEEEEETT-------EEEEEETTTTEEE
T ss_pred             CCCCCC--ccEEEEECCeEEEEECC-------EEEEEeCCcCEEE
Confidence            112222  23455668899999773       5889998776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=3.9  Score=35.14  Aligned_cols=174  Identities=11%  Similarity=0.064  Sum_probs=86.3

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      .+..+|..+.......   ...............+..++.|+.+      ..+.+||..+......-. +    ......
T Consensus       182 ~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~-~----h~~~v~  247 (355)
T d1nexb2         182 TLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMD------TTIRIWDLENGELMYTLQ-G----HTALVG  247 (355)
T ss_dssp             CEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEEEC-C----CSSCCC
T ss_pred             eeeeeecccccceeee---eccccccccccccccceeeeccccc------ceEEeeeccccccccccc-c----cccccc
Confidence            3888998887654443   2121122222222244555555543      358899988766433321 1    112223


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                      ++.++++ .++.|+.+     ..+.+||+.+..-.....    ............++.+++.|. +     +.+.+||+.
T Consensus       248 ~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~~  311 (355)
T d1nexb2         248 LLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-E-----NQFNIYNLR  311 (355)
T ss_dssp             EEEECSS-EEEEECTT-----SEEEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEEE-T-----TEEEEEETT
T ss_pred             ccccccc-eeeeeecc-----cccccccccccceecccc----cCCceEEEEEcCCCCEEEEEe-C-----CEEEEEECC
Confidence            4555566 56666654     358888987654322110    111122233444666655543 2     257889988


Q ss_pred             CCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847          270 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       270 ~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      +++.... .+.      .+......+...++ .+++.|+.++.  .-+|++|++
T Consensus       312 tg~~~~~-~~~------~~~~~V~~v~~~~~-~~~~~~s~dg~--~~l~~~dfs  355 (355)
T d1nexb2         312 SGKLVHA-NIL------KDADQIWSVNFKGK-TLVAAVEKDGQ--SFLEILDFS  355 (355)
T ss_dssp             TCCBCCS-CTT------TTCSEEEEEEEETT-EEEEEEESSSC--EEEEEEECC
T ss_pred             CCCEEEE-Eec------CCCCCEEEEEEcCC-eEEEEEECCCc--EEEEEEeCC
Confidence            7753211 111      11112333444554 56666666653  247777753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.21  E-value=6.7  Score=37.56  Aligned_cols=124  Identities=13%  Similarity=0.058  Sum_probs=69.9

Q ss_pred             eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCCC-----CCCCCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847           87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK-----VPVARGGHSVTLVGSRLIIFGGEDRSRKLL  159 (499)
Q Consensus        87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~-----~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  159 (499)
                      +-+++++.||+...       .+.++.+|..|++  |+.-.....     ..........+..++++|+...       .
T Consensus        72 tPiv~~g~vyv~t~-------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~  137 (573)
T d1kb0a2          72 TPVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------D  137 (573)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------T
T ss_pred             CCEEECCEEEEECC-------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------c
Confidence            34678999998754       2349999999884  765321100     1111223345667888887532       2


Q ss_pred             CcEEEEECCCCe--eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCc--eEec
Q 010847          160 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNE--WSQP  226 (499)
Q Consensus       160 ~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~--W~~~  226 (499)
                      ..++++|..+++  |+.-...+.........+.+++ ++ .+|+|+.. .......|..||..|++  |+.-
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cceeeeccccccceecccCccCCcceEEeecceEEE-ec-cEEEeeccccccccceEEEEecCCccceeeee
Confidence            358999988875  7654321111111112223344 55 35556543 22334579999999986  8763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=3.6  Score=34.23  Aligned_cols=186  Identities=15%  Similarity=0.178  Sum_probs=89.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  110 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~  110 (499)
                      ..++.|+.++     .+.++|+.+++-..  .+..                ......++..++++++.||.++      .
T Consensus        26 ~~l~sgs~Dg-----~i~vWd~~~~~~~~--~l~~----------------H~~~V~~v~~~~~~l~s~s~D~------~   76 (293)
T d1p22a2          26 QKIVSGLRDN-----TIKIWDKNTLECKR--ILTG----------------HTGSVLCLQYDERVIITGSSDS------T   76 (293)
T ss_dssp             SEEEEEESSS-----CEEEEESSSCCEEE--EECC----------------CSSCEEEEECCSSEEEEEETTS------C
T ss_pred             CEEEEEeCCC-----eEEEEECCCCcEEE--EEec----------------CCCCEeeeecccceeecccccc------c
Confidence            5566676432     47888988776433  2211                1112233445777777777543      3


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee-EEeeecCCCCCCCccce
Q 010847          111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~  189 (499)
                      +..+++.++........   . ...........+.+...++       ...+.++|..+..- .....   .........
T Consensus        77 i~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~  142 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIH---H-CEAVLHLRFNNGMMVTCSK-------DRSIAVWDMASPTDITLRRV---LVGHRAAVN  142 (293)
T ss_dssp             EEEEESSSCCEEEEECC---C-CSCEEEEECCTTEEEEEET-------TSCEEEEECSSSSCCEEEEE---ECCCSSCEE
T ss_pred             ccccccccccccccccc---c-ccccccccccccceeeccc-------ccceeEeecccccccccccc---ccccccccc
Confidence            88889888876665421   1 1111122222334444333       22456666655431 11111   111222222


Q ss_pred             EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847          190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  269 (499)
Q Consensus       190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  269 (499)
                      ........++..++ +     ..+..+|+.+..-...-. +    .......+..++..++.|+.++     .+.+||+.
T Consensus       143 ~~~~~~~~~~~~s~-d-----~~i~~~d~~~~~~~~~~~-~----~~~~v~~~~~~~~~l~~~~~dg-----~i~i~d~~  206 (293)
T d1p22a2         143 VVDFDDKYIVSASG-D-----RTIKVWNTSTCEFVRTLN-G----HKRGIACLQYRDRLVVSGSSDN-----TIRLWDIE  206 (293)
T ss_dssp             EEEEETTEEEEEET-T-----SEEEEEETTTCCEEEEEE-C----CSSCEEEEEEETTEEEEEETTS-----CEEEEETT
T ss_pred             cceecccccccccC-C-----CceeeecCCCCcEEEEEc-c----cccccccccCCCCeEEEecCCC-----EEEEEecc
Confidence            33334554444333 2     358888887765332110 1    1111122333455566666443     36788888


Q ss_pred             CCceEE
Q 010847          270 KLAWSI  275 (499)
Q Consensus       270 ~~~W~~  275 (499)
                      +..-..
T Consensus       207 ~~~~~~  212 (293)
T d1p22a2         207 CGACLR  212 (293)
T ss_dssp             TCCEEE
T ss_pred             cceeee
Confidence            766544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.57  E-value=5  Score=35.02  Aligned_cols=205  Identities=10%  Similarity=-0.014  Sum_probs=101.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCCCCCc
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM  109 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~~~~~  109 (499)
                      .||+.--     ....++.|||.++.........                 ...-+.++.. ++.||+..-....  ...
T Consensus        52 ~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~~-----------------~~~p~gla~~~dG~l~va~~~~~~--~~~  107 (319)
T d2dg1a1          52 QLFLLDV-----FEGNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDFK--STG  107 (319)
T ss_dssp             CEEEEET-----TTCEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTSS--SCC
T ss_pred             CEEEEEC-----CCCEEEEEECCCCeEEEEEeCC-----------------CCCeeEEEECCCCCEEEEecCCCc--cce
Confidence            6666531     2235888999887654443221                 1122344433 5688886421111  134


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847          110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  189 (499)
Q Consensus       110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~  189 (499)
                      .+..++..+......... ..+..+.+-.++.-++.||+-.-..........++.+++.......+...  +.    ...
T Consensus       108 ~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~----~pn  180 (319)
T d2dg1a1         108 GIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS----VAN  180 (319)
T ss_dssp             EEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES----SEE
T ss_pred             eEEEEcCCCceeeeeccC-CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--cc----eee
Confidence            588888888876665421 11222222233334567877532221122355688898887776665431  11    112


Q ss_pred             EEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCCc---eEeccc-CCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcce
Q 010847          190 AALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEI-KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQE  262 (499)
Q Consensus       190 ~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~-~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~  262 (499)
                      ...+  +++.||+.--     ..+.|++||+....   ...... .........-..+++- +++|||..-.     ...
T Consensus       181 Gia~s~dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~  250 (319)
T d2dg1a1         181 GIALSTDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGR  250 (319)
T ss_dssp             EEEECTTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTE
T ss_pred             eeeeccccceEEEecc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CCE
Confidence            2333  2456777632     34679999876432   111000 0001111111233333 4678887421     236


Q ss_pred             EEEEECCCCceEEe
Q 010847          263 TIVLNMTKLAWSIL  276 (499)
Q Consensus       263 ~~~~d~~~~~W~~l  276 (499)
                      +.+||+....-..+
T Consensus       251 V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         251 VLVFNKRGYPIGQI  264 (319)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEE
Confidence            89999865544444

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.52  E-value=3.2  Score=33.50  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=54.8

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeec----CCCCCCCccceEEEE-----cCcEEEEEcCCCCCCCCCcE
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT----QTPPAPRYDHSAALH-----ANRYLIVFGGCSHSIFFNDL  213 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----~~~p~~r~~~~~~~~-----~~~~l~v~GG~~~~~~~~~i  213 (499)
                      ++++|+|-|.        .+++|+-.+....-+...    ..+|...  -++...     .++.+|+|-|       +..
T Consensus        59 ~~~~yfFkG~--------~yw~y~~~~~~~gyPk~i~~~~~glp~~i--DAA~~~~~~~~~~~~~yfFkg-------~~y  121 (192)
T d1qhua1          59 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIPFPL--DAAVECHRGECQDEGILFFQG-------NRK  121 (192)
T ss_dssp             TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCCSSC--CEEEEECBBTBSSSEEEEEET-------TEE
T ss_pred             CCcEEEEeCC--------EEEEEeCCccccCCCcChHHhCCCCCCCc--eEEEEccccccCCCeEEEEeC-------CeE
Confidence            5799999763        477886544333212211    1233222  222222     3667899987       468


Q ss_pred             EEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          214 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       214 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      |+||..+..=..-   .-...+.. .+++..++.+|+|-|       +..|+||..+..
T Consensus       122 w~yd~~~~~~~~~---~w~gip~~-daA~~~~g~~YfFkg-------~~y~r~~~~~~~  169 (192)
T d1qhua1         122 WFWDLTTGTKKER---SWPAVGNC-TSALRWLGRYYCFQG-------NQFLRFNPVSGE  169 (192)
T ss_dssp             EEEETTTTEEEEE---CCTTSCCC-SEEEEETTEEEEEET-------TEEEEECTTTCC
T ss_pred             EEEeCCCCCcccc---cccCcCCc-ceeEEeCCcEEEEEC-------CEEEEEcCCcce
Confidence            9999887641110   10111222 345556899999977       257899877754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.35  E-value=7.9  Score=36.91  Aligned_cols=123  Identities=17%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      .||+..+      .+.++.+|..|++  |+.-+.....   ..     ............+..+++||+...       .
T Consensus        68 ~vyv~t~------~~~v~AlDa~tG~~lW~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~v~~~~~-------~  126 (560)
T d1kv9a2          68 VIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV---KA-----RTSCCDAVNRGVALWGDKVYVGTL-------D  126 (560)
T ss_dssp             EEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG---GG-----GGCTTCSCCCCCEEEBTEEEEECT-------T
T ss_pred             EEEEECC------CCeEEEEeCCCCCEEEEECCCCCcc---cc-----ccccccccccCcceeCCeEEEEeC-------C
Confidence            6666543      3468999999885  8864332110   00     011112233456677888887643       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEee
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  176 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~  176 (499)
                      ..++.+|..+++  |+.... +..+......+.+++++.+++ |+..........+..||..|.+  |+.-.
T Consensus       127 g~l~Alda~tG~~~w~~~~~-~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         127 GRLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGKVII-GNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             SEEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEECCCCcEEeccCcc-CcccceeeeeeeeeecCcccc-cccceeccccceEEEEECCCceEEeeeee
Confidence            349999998874  655431 111222222344556777765 3332222234579999999874  76543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.29  E-value=2.6  Score=36.75  Aligned_cols=141  Identities=13%  Similarity=0.129  Sum_probs=75.1

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  123 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  123 (499)
                      .+++||..++...+++..                  .+.  ..+.+  +++..+++|....    ..++++|..++.-..
T Consensus        25 ~v~v~d~~~~~~~~~~~~------------------~~v--~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~   80 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPEP------------------LRI--RYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEK   80 (360)
T ss_dssp             EEEEECTTSSBEEECSCC------------------SCE--EEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEccCC------------------CCE--EEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEE
Confidence            689999998887775321                  232  22333  5665555553322    248999999988766


Q ss_pred             eecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847          124 METSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  202 (499)
Q Consensus       124 ~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  202 (499)
                      +.   ..+..  -.+++. -+++.+++++.      ...++.++..+.....+....    ......++...++..++++
T Consensus        81 ~~---~~~~~--v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          81 FE---ENLGN--VFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERSR----EAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             CC---CCCCS--EEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECS----SSCCCCEEECTTSCEEEEE
T ss_pred             ee---CCCce--EEeeeecccccccceecc------ccccccccccccceeeeeecc----cccccchhhccceeeeeee
Confidence            54   22211  122222 24555555543      335888999887765554311    1122223333344455554


Q ss_pred             CCCC-----CCCCCcEEEEECCCCceEe
Q 010847          203 GCSH-----SIFFNDLHVLDLQTNEWSQ  225 (499)
Q Consensus       203 G~~~-----~~~~~~i~~~d~~~~~W~~  225 (499)
                      +...     ......++.+|+.+..-..
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeeccccceeeeccccCceee
Confidence            3221     1223457888988765443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.94  E-value=8.6  Score=36.74  Aligned_cols=124  Identities=15%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~  108 (499)
                      +||+...      .+.|+.+|..|++  |+.-+.....   ..     .........-..+..++++|+...       .
T Consensus        79 ~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~---~~-----~~~~~~~~~~g~~~~~~~v~~~t~-------~  137 (573)
T d1kb0a2          79 IMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS---TG-----FKGCCDVVNRGVALWKGKVYVGAW-------D  137 (573)
T ss_dssp             EEEEECG------GGCEEEEETTTTEEEEEECCCCCGG---GG-----GGSSSCSCCCCCEEETTEEEEECT-------T
T ss_pred             EEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcc---cc-----cccccccccccceEECCcEEEEec-------c
Confidence            7776543      3469999999885  8765432210   00     001112233456677888887642       2


Q ss_pred             ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEee
Q 010847          109 MIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  176 (499)
Q Consensus       109 ~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~  176 (499)
                      ..++.+|..|++  |+.....+.........+.+++++.+|+ |+..........|..||..|++  |+.-.
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             cceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeeeee
Confidence            348999998885  6654321111111122234556777765 4443332235579999999875  76543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.08  E-value=4.8  Score=36.91  Aligned_cols=214  Identities=15%  Similarity=0.129  Sum_probs=103.0

Q ss_pred             CCCeEEcccCCCCCCcccc-----eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccce
Q 010847           12 YDLWVTLPVSGARPSPRYK-----KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH   86 (499)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~-----~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~   86 (499)
                      ...|..+.+.+++|..-..     .++++--.    ..+.+.++|..+++-...-..                  +..-|
T Consensus         8 ~~~w~v~~~~~~~~~~~~~~~~~~~~~~v~~~----d~g~v~v~D~~t~~v~~~~~~------------------g~~~~   65 (432)
T d1qksa2           8 RESWKVHVAPEDRPTQQMNDWDLENLFSVTLR----DAGQIALIDGSTYEIKTVLDT------------------GYAVH   65 (432)
T ss_dssp             HHHCEESSCGGGSCSSCCSCCCGGGEEEEEET----TTTEEEEEETTTCCEEEEEEC------------------SSCEE
T ss_pred             hhceeEecccccCCCceeecCCCCcEEEEEEc----CCCEEEEEECCCCcEEEEEeC------------------CCCee
Confidence            3467777654444432211     34433221    234689999999886554433                  22233


Q ss_pred             eEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-E-----CCEEEEEcCcCCCCCc
Q 010847           87 CMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-V-----GSRLIIFGGEDRSRKL  158 (499)
Q Consensus        87 s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~-----~~~lyv~GG~~~~~~~  158 (499)
                      .++..  |.+||+. +.      ...+.++|+.++.-....   ..+.......++. .     +..||+.+..      
T Consensus        66 ~v~fSpDG~~l~~~-s~------dg~v~~~d~~t~~~~~~~---~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~------  129 (432)
T d1qksa2          66 ISRLSASGRYLFVI-GR------DGKVNMIDLWMKEPTTVA---EIKIGSEARSIETSKMEGWEDKYAIAGAYW------  129 (432)
T ss_dssp             EEEECTTSCEEEEE-ET------TSEEEEEETTSSSCCEEE---EEECCSEEEEEEECCSTTCTTTEEEEEEEE------
T ss_pred             EEEECCCCCEEEEE-cC------CCCEEEEEeeCCCceEEE---EEecCCCCCCeEEecccCCCCCEEEEEcCC------
Confidence            33333  4567654 33      234889998887643332   1222111122221 1     3467775543      


Q ss_pred             cCcEEEEECCCCeeEEeeecCC--------CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC
Q 010847          159 LNDVHFLDLETMTWDAVEVTQT--------PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  230 (499)
Q Consensus       159 ~~~v~~yd~~t~~W~~~~~~~~--------~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  230 (499)
                      .+.+.++|..+.+-........        .+.++....+...++..+++....     .+.++.+|..+..-..+.   
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-----~~~i~~~d~~~~~~~~~~---  201 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTT---  201 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEETTCSSEEEEE---
T ss_pred             CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----CCeEEEEEccCCCcceEE---
Confidence            3468899998887655443210        012222111222223444443322     356888887765432221   


Q ss_pred             CCCCcCcccEEEEE-CCE-EEEEeCCCCCCCcceEEEEECCCCceEEe
Q 010847          231 DLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSIL  276 (499)
Q Consensus       231 ~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~~W~~l  276 (499)
                      ..+....-+.++.. +++ +++.+. .    .+.+..+|..+......
T Consensus       202 ~i~~g~~~~~~~~spdg~~~~va~~-~----~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         202 EISAERFLHDGGLDGSHRYFITAAN-A----RNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEG-G----GTEEEEEETTTTEEEEE
T ss_pred             EEcccCccccceECCCCCEEEEecc-c----cceEEEeecccceEEEE
Confidence            11222333444444 334 444433 2    23577778777665443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.44  E-value=9  Score=34.95  Aligned_cols=121  Identities=7%  Similarity=0.008  Sum_probs=64.9

Q ss_pred             EEEcCcEEEEEcCCCCCCCCCcEEEEECCC---CceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847          191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQT---NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  267 (499)
Q Consensus       191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  267 (499)
                      +...++.+|+....+  .....+...++..   ..|+.+-  +..........+...++.+++.-=   .+....+.+++
T Consensus       293 ~~~~~~~~~~~Tn~~--a~~~~L~~~~~~~~~~~~w~~vi--~~~~~~~~~~~~~~~~~~lvl~~~---~~~~~~l~v~~  365 (430)
T d1qfma1         293 VTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRSNFLVLCYL---HDVKNTLQLHD  365 (430)
T ss_dssp             EEEETTEEEEEECTT--CTTCEEEEEETTBCCGGGCEEEE--CCCSSCEEEEEEEETTTEEEEEEE---ETTEEEEEEEE
T ss_pred             EecCCceeecccCcc--cccceeEEecCCCCccccceEEe--cccCcceeeeEEEEECCEEEEEEE---cCCEeEEEEEE
Confidence            444466677776543  2334677777654   4587752  111111222223333566655421   23456799999


Q ss_pred             CCCCceEEeccCCCCCCCCCCCCceEEEEE--cCceEEEEEcCCCCCCCceEEEEECCCCCCC
Q 010847          268 MTKLAWSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  328 (499)
Q Consensus       268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~  328 (499)
                      +.++.|..+..++.       + +......  ......|.+.++..  ...+|.||+.+.+.+
T Consensus       366 ~~~~~~~~~~~~~~-------~-sv~~~~~~~~~~~~~~~~ss~~t--P~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         366 LATGALLKIFPLEV-------G-SVVGYSGQKKDTEIFYQFTSFLS--PGIIYHCDLTKEELE  418 (430)
T ss_dssp             TTTCCEEEEECCCS-------S-EEEEEECCTTCSEEEEEEECSSC--CCEEEEEETTSSSCC
T ss_pred             CCCCcEEEecCCCC-------c-eEeeccCCCCCCEEEEEEcCCCC--CCeEEEEECCCCCcc
Confidence            99999988754321       1 1221211  22334454555443  457999999877554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.38  E-value=6.8  Score=33.51  Aligned_cols=65  Identities=17%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCC
Q 010847           31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  108 (499)
Q Consensus        31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~  108 (499)
                      +.+++|+.+     +.+.+||+.+++-...-..+                ....-.+++..  +..+|+.+..      .
T Consensus         9 ~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~----------------~~~~p~~l~~spDG~~l~v~~~~------~   61 (346)
T d1jmxb_           9 EYMIVTNYP-----NNLHVVDVASDTVYKSCVMP----------------DKFGPGTAMMAPDNRTAYVLNNH------Y   61 (346)
T ss_dssp             EEEEEEETT-----TEEEEEETTTTEEEEEEECS----------------SCCSSCEEEECTTSSEEEEEETT------T
T ss_pred             cEEEEEcCC-----CEEEEEECCCCCEEEEEEcC----------------CCCCcceEEECCCCCEEEEEECC------C
Confidence            556666642     46999999999754322221                11222233332  4567877654      2


Q ss_pred             ceEEEEECCCCcEE
Q 010847          109 MIVRFIDLETNLCG  122 (499)
Q Consensus       109 ~~~~~yd~~t~~W~  122 (499)
                      +.+.+||+.++.=.
T Consensus        62 ~~v~~~d~~t~~~~   75 (346)
T d1jmxb_          62 GDIYGIDLDTCKNT   75 (346)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CcEEEEeCccCeee
Confidence            35999999988644

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.23  E-value=1.6  Score=31.62  Aligned_cols=21  Identities=0%  Similarity=0.287  Sum_probs=8.3

Q ss_pred             hhHHHHHHhhccchHHHHHHH
Q 010847          406 RFREKIDEVNSTHSELSKELS  426 (499)
Q Consensus       406 ~l~~~~~~~~~~~~~~~~~~~  426 (499)
                      .++++++.+..++..++.++.
T Consensus        12 ~lq~el~~~~~q~~~le~q~~   32 (107)
T d1fxka_          12 QLQQQAQAISVQKQTVEMQIN   32 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444433333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.22  E-value=6.9  Score=33.40  Aligned_cols=142  Identities=10%  Similarity=0.056  Sum_probs=71.6

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      .+..++.|+.+      ..+.+||..++.....-.  ...   ....++.+++..++.|+.++      .+.+||+.+..
T Consensus       212 ~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~--~h~---~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~  274 (355)
T d1nexb2         212 ERKRCISASMD------TTIRIWDLENGELMYTLQ--GHT---ALVGLLRLSDKFLVSAAADG------SIRGWDANDYS  274 (355)
T ss_dssp             TTTEEEEEETT------SCEEEEETTTCCEEEEEC--CCS---SCCCEEEECSSEEEEECTTS------EEEEEETTTCC
T ss_pred             cceeeeccccc------ceEEeeeccccccccccc--ccc---ccccccccccceeeeeeccc------ccccccccccc
Confidence            34455555543      238899988876544321  111   11234556677777777542      58889987765


Q ss_pred             eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCc-ccEEEEECCEEEE
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITIDENWYI  250 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~~~~l~v  250 (499)
                      -......    ......++... ++.+++. |.+     +.+.+||+.+++.-..    ....... -.+++..++.+++
T Consensus       275 ~~~~~~~----~~~~~~~~~~~-~~~~l~~-g~d-----~~i~vwd~~tg~~~~~----~~~~~~~~V~~v~~~~~~~~~  339 (355)
T d1nexb2         275 RKFSYHH----TNLSAITTFYV-SDNILVS-GSE-----NQFNIYNLRSGKLVHA----NILKDADQIWSVNFKGKTLVA  339 (355)
T ss_dssp             EEEEEEC----TTCCCCCEEEE-CSSEEEE-EET-----TEEEEEETTTCCBCCS----CTTTTCSEEEEEEEETTEEEE
T ss_pred             eeccccc----CCceEEEEEcC-CCCEEEE-EeC-----CEEEEEECCCCCEEEE----EecCCCCCEEEEEEcCCeEEE
Confidence            3222111    12222233333 4435554 432     4689999988764321    1111111 1233444666655


Q ss_pred             EeCCCCCCCcceEEEEEC
Q 010847          251 VGGGDNNNGCQETIVLNM  268 (499)
Q Consensus       251 ~GG~~~~~~~~~~~~~d~  268 (499)
                      .|+.++.   .-+|++|.
T Consensus       340 ~~s~dg~---~~l~~~df  354 (355)
T d1nexb2         340 AVEKDGQ---SFLEILDF  354 (355)
T ss_dssp             EEESSSC---EEEEEEEC
T ss_pred             EEECCCc---EEEEEEeC
Confidence            5554432   24677775

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=87.84  E-value=7.2  Score=33.16  Aligned_cols=118  Identities=14%  Similarity=0.219  Sum_probs=64.2

Q ss_pred             cceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCc--ceEEEEECCEEEEEcCcCC-------
Q 010847           84 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG--GHSVTLVGSRLIIFGGEDR-------  154 (499)
Q Consensus        84 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~--~~~~~~~~~~lyv~GG~~~-------  154 (499)
                      +..|+-.+++-||+.---.-....-+++.+-.-....|+.+.    +|.-..  ..-.+.+++.||+||-.-.       
T Consensus       336 sepcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lr----fp~nvhhsnlpfakvgd~l~ifgsera~~ewe~g  411 (516)
T d1v0ea1         336 SEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAG  411 (516)
T ss_dssp             EEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTT
T ss_pred             CCchhhhcCCEEEEEeccccCCCCCccceeccccccChhhcc----CCccccccCCChhhcCCeEEEecccccccccccC
Confidence            334556779999987533322222445665555566899995    444332  3346778999999985321       


Q ss_pred             ---C---CCccCcE-EEEE-----CCCCeeEEeeec---CCCCCCCccceEEEEcCcEE-EEEcCCC
Q 010847          155 ---S---RKLLNDV-HFLD-----LETMTWDAVEVT---QTPPAPRYDHSAALHANRYL-IVFGGCS  205 (499)
Q Consensus       155 ---~---~~~~~~v-~~yd-----~~t~~W~~~~~~---~~~p~~r~~~~~~~~~~~~l-~v~GG~~  205 (499)
                         +   +.+-..+ ...|     +..-+|..+..-   |......-+...+++.++.| |||||-+
T Consensus       412 apd~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged  478 (516)
T d1v0ea1         412 APDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  478 (516)
T ss_dssp             CCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred             CCccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence               1   1111111 2233     344567666531   22223334445555556654 7899964

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.44  E-value=8  Score=33.22  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847          143 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  222 (499)
Q Consensus       143 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  222 (499)
                      ++.||.+=-      ....|+.||+.+++-+....    |.  ...+++...++.+++...       +.++.||+.+++
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~~~----~~--~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~   89 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGV   89 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCC
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEEEC----CC--CcEEEEEecCCCEEEEEe-------CccEEeecccce
Confidence            567776511      24579999999987655432    21  223444445666666432       359999999999


Q ss_pred             eEecccC-CCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010847          223 WSQPEIK-GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  301 (499)
Q Consensus       223 W~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~  301 (499)
                      ++.+... ...+..|.....+--++.+|+..-. .........+|.+..+..+.+..-.        ...-..+...+..
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~-~~~~~~~g~l~~~~~g~~~~~~~~~--------~~~Ng~~~s~d~~  160 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMG-RKAETGAGSIYHVAKGKVTKLFADI--------SIPNSICFSPDGT  160 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEE-TTCCTTCEEEEEEETTEEEEEEEEE--------SSEEEEEECTTSC
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEecc-ccccccceeEeeecCCcEEEEeecc--------CCcceeeecCCCc
Confidence            8876421 1122223332222225566654322 2222223445555556555543210        0111122223344


Q ss_pred             EEEEEcCCCCCCCceEEEEECC
Q 010847          302 HLVAFGGYNGKYNNEVFVMRLK  323 (499)
Q Consensus       302 ~l~v~GG~~~~~~~~~~~~~~~  323 (499)
                      .+|+..-.    ...+|+|++.
T Consensus       161 ~l~~~dt~----~~~I~~~~~d  178 (295)
T d2ghsa1         161 TGYFVDTK----VNRLMRVPLD  178 (295)
T ss_dssp             EEEEEETT----TCEEEEEEBC
T ss_pred             eEEEeecc----cceeeEeeec
Confidence            55554332    3468888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=87.22  E-value=7.3  Score=32.56  Aligned_cols=105  Identities=20%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847           94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  171 (499)
Q Consensus        94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~  171 (499)
                      ++||.+..      .+.+.++|+.+++....-..|..|     +.++.-  +.+||+.++.      .+.+.+||+.+.+
T Consensus         3 ~~yV~~~~------~~~v~v~D~~t~~~~~~i~~g~~p-----~~va~spdG~~l~v~~~~------~~~i~v~d~~t~~   65 (301)
T d1l0qa2           3 FAYIANSE------SDNISVIDVTSNKVTATIPVGSNP-----MGAVISPDGTKVYVANAH------SNDVSIIDTATNN   65 (301)
T ss_dssp             EEEEEETT------TTEEEEEETTTTEEEEEEECSSSE-----EEEEECTTSSEEEEEEGG------GTEEEEEETTTTE
T ss_pred             EEEEEECC------CCEEEEEECCCCeEEEEEECCCCc-----eEEEEeCCCCEEEEEECC------CCEEEEEECCCCc
Confidence            57777653      345999999999876544332222     233332  3468876653      3469999999876


Q ss_pred             eEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEe
Q 010847          172 WDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  225 (499)
Q Consensus       172 W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  225 (499)
                      -...-..     ...-+.++...+ ..+++.+..+     ..+..++..+++...
T Consensus        66 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          66 VIATVPA-----GSSPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEEEEC-----SSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             eeeeeec-----ccccccccccccccccccccccc-----ceeeecccccceeee
Confidence            5433221     222234444334 4445443322     357788887776444

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.66  E-value=9  Score=33.02  Aligned_cols=111  Identities=11%  Similarity=-0.010  Sum_probs=57.0

Q ss_pred             CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      +.+++.||.+      ..+..||..+..-.....  ........-.++.+   .+.+++.||.+      ..+.+||+.+
T Consensus       172 ~~~~~~~~~d------~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d------~~i~iwd~~~  237 (325)
T d1pgua1         172 PMRSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKS  237 (325)
T ss_dssp             SCEEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTT
T ss_pred             cceEEEeecc------cccccccccccccceecc--cccCCCCccEEeeeccccceeccccccc------cceeeeeecc
Confidence            4456666643      247788877665433321  11111112223333   24677777654      3588999988


Q ss_pred             CeeEEeeecCCCCCCCccceE-EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceE
Q 010847          170 MTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       170 ~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  224 (499)
                      ++....-. + ...+...... ....++..++.|+.+     ..+.+||+.+++-.
T Consensus       238 ~~~~~~l~-~-~~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~  286 (325)
T d1pgua1         238 GEFLKYIE-D-DQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCV  286 (325)
T ss_dssp             CCEEEECC-B-TTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred             cccccccc-c-cccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEE
Confidence            76432211 1 1122222222 223444466677654     35889999887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.03  E-value=8.3  Score=32.01  Aligned_cols=237  Identities=11%  Similarity=0.043  Sum_probs=112.2

Q ss_pred             cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccce-eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847           46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  124 (499)
Q Consensus        46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  124 (499)
                      ++|++|+.++.-+++.....                 .... +...-|.+|.+......... ...+++++..++...++
T Consensus        22 dl~~~d~~~g~~~~Lt~~~~-----------------~~~~p~~SPDG~~iaf~~~~~~~~~-~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSNLG-----------------VINNARFFPDGRKIAIRVMRGSSLN-TADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTTCCEEEEECSSS-----------------EEEEEEECTTSSEEEEEEEESTTCC-EEEEEEEETTTTEEEEC
T ss_pred             cEEEEECCCCCEEEEecCCC-----------------cccCEEECCCCCEEEEEEeeCCCCC-ceEEEEEEecCCceEEe
Confidence            69999999999887754321                 1111 11111456665543332222 45699999999998888


Q ss_pred             ecCCCCC-CCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEE
Q 010847          125 ETSGKVP-VARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF  201 (499)
Q Consensus       125 ~~~g~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~  201 (499)
                      ...+... ..+........  +++.+++.-..........++..+...........      .... ....-.++.++.+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~  156 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL------GPAT-HILFADGRRVIGR  156 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS------CSCS-EEEEETTEEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC------Cccc-eeeecCCCeEEEe
Confidence            6321110 11112222222  44444443322222223445666666655443321      1111 2223334434444


Q ss_pred             cCCCCCC------CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEE
Q 010847          202 GGCSHSI------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  275 (499)
Q Consensus       202 GG~~~~~------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  275 (499)
                      .......      ..............-....     ............++.++.....   ....++|++|+.+..-+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~d~~g~~~~~  228 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-----DMSTHVSSPVIVGHRIYFITDI---DGFGQIYSTDLDGKDLRK  228 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-----CCSSCCEEEEEETTEEEEEECT---TSSCEEEEEETTSCSCEE
T ss_pred             eccccceeeeeccCCcceeeeeccccceeecc-----CCccccceeeeeccccceeccc---ccccceEEEeCCCCceEE
Confidence            3322111      0111222222222222111     1111112223345555555432   234579999999998887


Q ss_pred             eccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCCCC
Q 010847          276 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  330 (499)
Q Consensus       276 l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~  330 (499)
                      +.....        ........+++..+|.-+|       ++|++|+..++-..+
T Consensus       229 lt~~~~--------~~~~~~SpDG~~I~f~~~~-------~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         229 HTSFTD--------YYPRHLNTDGRRILFSKGG-------SIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CCCCCS--------SCEEEEEESSSCEEEEETT-------EEEEECTTTCCEEEC
T ss_pred             eecCCC--------cccccCcCCCCEEEEEeCC-------EEEEEECCCCCEEEe
Confidence            754321        1122345677655554443       799999987765544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.89  E-value=9.2  Score=32.42  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCce
Q 010847          195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW  273 (499)
Q Consensus       195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  273 (499)
                      ...+++.|+.+     ..+.+||+.+..-...- .+   ....-.+++.. ++.+++.|+.++     .+.++|+.....
T Consensus       195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~-~~---h~~~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~~  260 (340)
T d1tbga_         195 DTRLFVSGACD-----ASAKLWDVREGMCRQTF-TG---HESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQE  260 (340)
T ss_dssp             TSSEEEEEETT-----TEEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEE
T ss_pred             ccceeEEeecC-----ceEEEEECCCCcEEEEE-eC---CCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeeccccc
Confidence            34455655543     35888898776533210 01   00111122222 456667766433     367888877654


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847          274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  325 (499)
Q Consensus       274 ~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  325 (499)
                      ........      .......+....+..+++.|+.++    .+.+||+...
T Consensus       261 ~~~~~~~~------~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd~~~~  302 (340)
T d1tbga_         261 LMTYSHDN------IICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA  302 (340)
T ss_dssp             EEEECCTT------CCSCEEEEEECSSSCEEEEEETTS----CEEEEETTTC
T ss_pred             cccccccc------ccCceEEEEECCCCCEEEEEECCC----EEEEEECCCC
Confidence            43222111      112233334443334566677655    6888887643

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=7.9  Score=31.21  Aligned_cols=153  Identities=10%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             eeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEE-EeecC---CCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccC
Q 010847           86 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETS---GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN  160 (499)
Q Consensus        86 ~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~---g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~  160 (499)
                      -+++.+++.+|+|=|.        -+|.++....... ....+   ..+|.. ..++... .++++|+|-|.        
T Consensus        16 DAv~~~~G~~y~Fkg~--------~~wr~~~~~~~~~~P~~I~~~w~glp~~-IdAA~~~~~~~~~yffkg~--------   78 (200)
T d1gena_          16 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAGN--------   78 (200)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCSC-CSEEEEETTTTEEEEEETT--------
T ss_pred             eEEEecCCeEEEEeCC--------EEEEEcCCCCCCCCcEehhhccCCCCCC-ceEEEEECCCCeEEEecCc--------
Confidence            3667789999999663        2666654433322 12221   123322 2222222 35688888663        


Q ss_pred             cEEEEECCCCee---EEeeecCCCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-----cccC-
Q 010847          161 DVHFLDLETMTW---DAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-  229 (499)
Q Consensus       161 ~v~~yd~~t~~W---~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-  229 (499)
                      ..|+|+-.+...   ..+...| +|......-++..  .++.+|+|-|       +..|+||..++.-..     +... 
T Consensus        79 ~~~~y~~~~~~~gyPk~i~~~g-~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w  150 (200)
T d1gena_          79 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAW  150 (200)
T ss_dssp             EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHS
T ss_pred             eEEEEcCcccccCCCceehhcC-CCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhcc
Confidence            477776432111   1111112 2322222223332  4678999988       468999987765221     1110 


Q ss_pred             CCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          230 GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       230 ~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      ..+|.  .-.++...  ++++|+|-|       +..|.||..+..
T Consensus       151 ~gvp~--~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~  186 (200)
T d1gena_         151 NAIPD--NLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK  186 (200)
T ss_dssp             SSCCS--SCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred             CCCCC--CccEEEEecCCCEEEEEEC-------CEEEEEECCceE
Confidence            11232  22344443  578999977       257888865543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=84.91  E-value=11  Score=32.55  Aligned_cols=125  Identities=10%  Similarity=-0.001  Sum_probs=61.9

Q ss_pred             CCEEEEEcccCCCC-CCCceEEEEECCCCcEEEeecCCCCCCCCc--ceEEEEE--CCEEEEEcCcCCCCCccCcEEEEE
Q 010847           92 GTKLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKVPVARG--GHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLD  166 (499)
Q Consensus        92 ~~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~--~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd  166 (499)
                      ++.||+........ .....++++|+.++.+.....  ..+....  -+.++..  ++.||+..+       .+.+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~--~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--PEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--CEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEEC--CccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEEEe
Confidence            57788874332111 113459999999998877652  1111111  1223332  346777644       23588999


Q ss_pred             CCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC----------CCCCCCcEEEEECCCCceEec
Q 010847          167 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS----------HSIFFNDLHVLDLQTNEWSQP  226 (499)
Q Consensus       167 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~----------~~~~~~~i~~~d~~~~~W~~~  226 (499)
                      +.+.....+.........+.-..++...++.||+..-..          .......+|++++.. +...+
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~  167 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQV  167 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEe
Confidence            877654433322111111111234444566688752111          112234688887643 44443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.86  E-value=8.9  Score=31.89  Aligned_cols=53  Identities=9%  Similarity=0.084  Sum_probs=27.1

Q ss_pred             CcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847          211 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  272 (499)
Q Consensus       211 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  272 (499)
                      +.+..||+.++.....-. +   ....-.+++.. ++.+++.||.++     .+.+||+.+..
T Consensus       227 ~~i~~~~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  280 (317)
T d1vyhc1         227 KTIKMWDVSTGMCLMTLV-G---HDNWVRGVLFHSGGKFILSCADDK-----TLRVWDYKNKR  280 (317)
T ss_dssp             SEEEEEETTTTEEEEEEE-C---CSSCEEEEEECSSSSCEEEEETTT-----EEEEECCTTSC
T ss_pred             CEEEEEECCCCcEEEEEe-C---CCCCEEEEEECCCCCEEEEEECCC-----eEEEEECCCCc
Confidence            358888888776433110 1   01111122222 456666666432     47888887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.64  E-value=5.5  Score=34.02  Aligned_cols=107  Identities=14%  Similarity=0.024  Sum_probs=52.1

Q ss_pred             ceEEEEECCCCcEEEeecCCCCC-CCCc-ceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCC-C
Q 010847          109 MIVRFIDLETNLCGVMETSGKVP-VARG-GHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA-P  184 (499)
Q Consensus       109 ~~~~~yd~~t~~W~~~~~~g~~p-~~r~-~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~-~  184 (499)
                      +.+.++|+.+.+-...-   +.+ .+.. .+.+..-+ ..+|+.|+.      .+.+..||+.+++............ .
T Consensus        11 ~~v~v~D~~s~~~~~~i---~~~~~~~~~~~i~~spDg~~l~v~~~~------~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVI---TIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             TEEEEEETTTTEEEEEE---ECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             CEEEEEECCCCeEEEEE---ECCCCCCCccEEEECCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecCCCcccc
Confidence            45999999988643322   111 1111 12222223 467887653      3469999999987654332211111 1


Q ss_pred             CccceEEEEc-CcEEEEEcCCCC------CCCCCcEEEEECCCCceE
Q 010847          185 RYDHSAALHA-NRYLIVFGGCSH------SIFFNDLHVLDLQTNEWS  224 (499)
Q Consensus       185 r~~~~~~~~~-~~~l~v~GG~~~------~~~~~~i~~~d~~~~~W~  224 (499)
                      ...+.++... ++++|+.+....      ....+.+..+|..+..-.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE
Confidence            1222333333 344444432110      112345778888776533

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.22  E-value=12  Score=32.22  Aligned_cols=81  Identities=12%  Similarity=0.069  Sum_probs=41.2

Q ss_pred             CCcccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC
Q 010847           25 PSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  104 (499)
Q Consensus        25 p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~  104 (499)
                      |.|-..++|+..... ....+.++++|..+++=...-...             ..|    +.+....+..||+.+.....
T Consensus         9 ~spdg~~~~v~~~~~-~~~~~~v~v~D~~tg~~~~~~~~g-------------~~~----~~a~SpDg~~l~v~~~~~~~   70 (355)
T d2bbkh_           9 PAPDARRVYVNDPAH-FAAVTQQFVIDGEAGRVIGMIDGG-------------FLP----NPVVADDGSFIAHASTVFSR   70 (355)
T ss_dssp             CCCCTTEEEEEECGG-GCSSEEEEEEETTTTEEEEEEEEC-------------SSC----EEEECTTSSCEEEEEEEEEE
T ss_pred             eCCCCCEEEEEeccc-CCCcCeEEEEECCCCcEEEEEECC-------------CCC----ceEEcCCCCEEEEEeCCCcc
Confidence            333333778775422 234567999999998643222211             111    11112224557765432111


Q ss_pred             C---CCCceEEEEECCCCcEEE
Q 010847          105 S---SDSMIVRFIDLETNLCGV  123 (499)
Q Consensus       105 ~---~~~~~~~~yd~~t~~W~~  123 (499)
                      .   .....+.+||+.+++-..
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~   92 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTA   92 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEE
T ss_pred             ccccCCCCEEEEEECCCCCEEE
Confidence            1   013458899999886443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=82.94  E-value=12  Score=31.78  Aligned_cols=67  Identities=13%  Similarity=0.177  Sum_probs=40.9

Q ss_pred             CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEEEEECCC
Q 010847           92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET  169 (499)
Q Consensus        92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t  169 (499)
                      +++.++.|+..      +.+.+||+.+++-....   ..|....-.+++.. + ..+|+.+..      .+.+..||+.+
T Consensus         7 ~~~~l~~~~~~------~~v~v~D~~t~~~~~t~---~~~~~~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYP------NNLHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred             CCcEEEEEcCC------CEEEEEECCCCCEEEEE---EcCCCCCcceEEECCCCCEEEEEECC------CCcEEEEeCcc
Confidence            45667777653      45999999999653322   23333332344433 3 467777654      34699999988


Q ss_pred             CeeE
Q 010847          170 MTWD  173 (499)
Q Consensus       170 ~~W~  173 (499)
                      .+=.
T Consensus        72 ~~~~   75 (346)
T d1jmxb_          72 CKNT   75 (346)
T ss_dssp             TEEE
T ss_pred             Ceee
Confidence            7543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=82.23  E-value=14  Score=31.78  Aligned_cols=261  Identities=12%  Similarity=0.050  Sum_probs=122.1

Q ss_pred             CeEEcccCCCCCC----cccceEEEEcCCC--CCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee
Q 010847           14 LWVTLPVSGARPS----PRYKKLYIVGGSR--NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC   87 (499)
Q Consensus        14 ~W~~~~~~~~~p~----~r~~~l~~~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s   87 (499)
                      .|..++..-+.|.    .+.+.||+.....  .....+.++.||+.++.+.........             ...-..+.
T Consensus         9 ~~~~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~-------------~~~g~P~G   75 (314)
T d1pjxa_           9 LFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-------------GYGGIPAG   75 (314)
T ss_dssp             CCEEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-------------TEECCEEE
T ss_pred             ceEEeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc-------------cCCCccee
Confidence            5555554333332    2233888775432  122334699999999988776543210             00111223


Q ss_pred             EEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCc-ceEEEEECCEEEEEc--CcCC-------C
Q 010847           88 MVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG-GHSVTLVGSRLIIFG--GEDR-------S  155 (499)
Q Consensus        88 ~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~-~~~~~~~~~~lyv~G--G~~~-------~  155 (499)
                      ++..  ++.+|+..+       .+.+.++|+.+.....+.........+. +..++.-++.||+--  +...       .
T Consensus        76 l~~~~dg~~l~vad~-------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          76 CQCDRDANQLFVADM-------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEECSSSSEEEEEET-------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             EEEeCCCCEEEEEEC-------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence            3333  456777654       2348899988775544432111111111 112222356888752  2111       0


Q ss_pred             CCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-c-C---cEEEEEcCCCCCCCCCcEEEEECCCCc---eEecc
Q 010847          156 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-N---RYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPE  227 (499)
Q Consensus       156 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~---~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~  227 (499)
                      ......++.+++. .+...+...  +..|   -.++.. . +   .+||+..-     ..+.|++||+....   +..+-
T Consensus       149 ~~~~G~v~~~~~d-g~~~~~~~~--~~~p---NGi~~~~d~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~  217 (314)
T d1pjxa_         149 QEKFGSIYCFTTD-GQMIQVDTA--FQFP---NGIAVRHMNDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVW  217 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEEEE--ESSE---EEEEEEECTTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEE
T ss_pred             ccCCceEEEEeec-CceeEeeCC--ccee---eeeEECCCCCcceeEEEEEee-----cccceEEeeccCccccceeeEE
Confidence            1123468888764 345544321  1111   112221 1 2   14666532     24679999865332   22211


Q ss_pred             cCCCCCCcC-ccc-EEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcC-ceEE
Q 010847          228 IKGDLVTGR-AGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHL  303 (499)
Q Consensus       228 ~~~~~p~~r-~~~-~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~-~~~l  303 (499)
                        ...+... ... .+++- +++|||..-.     .+.+++||+.+.........+...        ...+...+ ...|
T Consensus       218 --~~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~I~~~dp~~g~~~~~i~~p~~~--------~t~~afg~d~~~l  282 (314)
T d1pjxa_         218 --GHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIRCPFEK--------PSNLHFKPQTKTI  282 (314)
T ss_dssp             --EECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEECSSSC--------EEEEEECTTSSEE
T ss_pred             --EEccccccccceeeEEecCCcEEEEEcC-----CCEEEEEeCCCCEEEEEEECCCCC--------EEEEEEeCCCCEE
Confidence              1111111 112 23332 5678886421     246999999876543221222211        11222333 3467


Q ss_pred             EEEcCCCCCCCceEEEEECCC
Q 010847          304 VAFGGYNGKYNNEVFVMRLKP  324 (499)
Q Consensus       304 ~v~GG~~~~~~~~~~~~~~~~  324 (499)
                      ||....+    +.+|+++...
T Consensus       283 yVt~~~~----g~i~~~~~~~  299 (314)
T d1pjxa_         283 FVTEHEN----NAVWKFEWQR  299 (314)
T ss_dssp             EEEETTT----TEEEEEECSS
T ss_pred             EEEECCC----CcEEEEECCC
Confidence            8765433    3788888643