Citrus Sinensis ID: 010854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Secondary Structure (PSIPRED)
ccccccEEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHccccEEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHcEEcccccccEEEEccccccccccHHHHcccccccEEEEEccccccccccHHHHHccccEEEEcHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHccccccccccccHHHccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEccccccccccccccccHHHHHHccccccccEEEEcccEEEEEccccEEEEcccccEEEcccccccHHHHHHHHcccccccEEEEEEccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccEEEEEEccccccccEEccHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEccccHHEEEHHcEEEEccccccEEEEEccccEEccEEEEEcccccccEEEEEccccccHHHHHHHHHcccEEEEccHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHccccEEEcEEEcccccEEEccccccccccccccccccccEEEEEcccccccccccccccEEEEEcccccHHHHHHcccHHHHHHHccccccccEEEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHHHccHHHHHHHEEccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHEEEcccccccccHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mfskgdaiaidmpMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKakgiftqdfilrggrkfplyskvlgaaplkaivlpaigndvgiplreqdlswkdflssvdyhprpnyyspvynpvDAVVNILfssgttgepkaipwtqlssirctaegwahidlkvgdvycwptnlgwvmgPVILFSSFLNGATLAlyqgsplersfgkfvqdaGVTVLGTVPSLVKAWRntnclegldwtkirsfastgetsnvdddlwLSSKAWYNAIIEScggtelssAYIQgsllqpqafgafSTATMTAGLVIldecgvpypddqpcvgevglfplylgasdrllnadheevyfrgmpmykgmclrrhgdiiKRTVGGYIIVqgraddtmnlggiktssVEIERVCDQADESILETAAisvspagggpEVLVIFVVLkkgftsqpdKLKMIFSKAIQSKLNPLFKVSLVkvvpefprtaSNKLLRRVLRDQIKHELSVRSRI
Flexible Loop (DISEMBL)
mfskgdaiaidmpMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRlrvskakgiftqdfilrggRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGtvpslvkawrntnclegldwTKIRSfastgetsnvdddLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVqgraddtmnlggIKTSSVEIERVCDQADESILETAAisvspagggPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVkvvpefprtasnkllrrvlrdqikhelsvrsri
Low Complexity Region (SEG)
MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Disordered region (IsUnstruct)
******AIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR*************
Disordered Region (DISOPRED)
MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH********
Disordered Region (DISEMBL)
MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH********
Disordered Region (DISPRO)
***KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
Q84P17	727	Probable acyl-activating	no	no	0.997	0.685	0.750	0.0
F4KBF3	721	Probable acyl-activating	no	no	0.969	0.671	0.570	1e-159
A1U2S9	649	Acetyl-coenzyme A synthet	yes	no	0.911	0.701	0.262	6e-33
A8FUF1	650	Acetyl-coenzyme A synthet	yes	no	0.943	0.724	0.258	2e-31
Q8Z1R0	652	Acetyl-coenzyme A synthet	N/A	no	0.935	0.716	0.264	3e-31
A9KY56	650	Acetyl-coenzyme A synthet	yes	no	0.943	0.724	0.249	5e-31
A6WM52	650	Acetyl-coenzyme A synthet	yes	no	0.943	0.724	0.249	6e-31
A3D3E8	650	Acetyl-coenzyme A synthet	yes	no	0.943	0.724	0.249	6e-31
Q54Z60	674	Acetyl-coenzyme A synthet	yes	no	0.955	0.707	0.271	7e-31
Q88EH6	653	Acetyl-coenzyme A synthet	yes	no	0.913	0.698	0.259	7e-31

>sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/501 (75%), Positives = 429/501 (85%), Gaps = 3/501 (0%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           F KGD IAIDMPMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+
Sbjct: 227 FEKGDTIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDY 286

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYY 120
           ILRGGR+FPLYS+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+   H    NYY
Sbjct: 287 ILRGGRRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYY 346

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
            P+Y PV++V+NILFSSGTTGEPKAIPWTQLS IR   +GWAH+D++VG  YCWPTNLGW
Sbjct: 347 RPIYLPVESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGW 406

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           VMGP ++FS FL GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL
Sbjct: 407 VMGPTLMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGL 466

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           +WTKI+ FA+TGE SNVDD LWLSSKA Y  +IE CGGTEL+S+YI GS LQPQAFGAFS
Sbjct: 467 NWTKIKFFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFS 526

Query: 301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
           T +MT  ++I DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK  
Sbjct: 527 TPSMTTRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKET 586

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
            LRRHGDI+KRTVGGY  VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P
Sbjct: 587 RLRRHGDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTP 646

Query: 421 AGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
             GGPE+LVIF VLK+GF  Q  ++LKM FS+ IQ  LNPLFKVS VK+VPEFPRTAS+K
Sbjct: 647 PNGGPELLVIFAVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSK 706

Query: 480 LLRRVLRDQIKHE-LSVRSRI 499
           LLRRVLRDQIK E LS+RSRI
Sbjct: 707 LLRRVLRDQIKQELLSLRSRI 727

May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1

 Score =  563 bits (1450), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/487 (57%), Positives = 346/487 (71%), Gaps = 3/487 (0%)

Query: 7   AIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGG 66
           AIA+DMPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG 
Sbjct: 229 AIAVDMPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGD 288

Query: 67  RKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 126
           +  PLY +V+ A    AIV+PA G+   + LRE+DLSW +FL +   + R   Y     P
Sbjct: 289 KSIPLYRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKP 347

Query: 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI 186
             A  NILFSSGTTGEPKAIPWT +S ++  A+ W H+D++ GDV  WPTNLGW+MGP +
Sbjct: 348 AGAYTNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWL 407

Query: 187 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 246
           +++S +NGA + LY GSPL  +F KFVQDA V+VLG +PS+V+ W+N+N   G DW++IR
Sbjct: 408 VYASLINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIR 467

Query: 247 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 306
            F STGE SN+D+ LWL  +A Y  +IE CGGTE+  ++I GSLLQPQ+  AFSTA M  
Sbjct: 468 CFGSTGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGC 527

Query: 307 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 366
            L ILDE   P P     VGE+ L P   GAS  LLN +H +VYF+GMP ++G  LRRHG
Sbjct: 528 KLFILDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHG 587

Query: 367 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 426
           D+ +RT  GY    GRADDTMNLGGIK  S+EIERVC+  D+S+LETAAI V P  GGPE
Sbjct: 588 DLFERTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPE 647

Query: 427 VLVIFVVLKKGFTSQPD--KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 484
            LVI VV K    S PD   LK  F+  IQ KLNPLFKVS V  +P  PRTA+NK++RRV
Sbjct: 648 QLVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRV 707

Query: 485 LRDQIKH 491
           LR Q+  
Sbjct: 708 LRQQLTQ 714

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 226/515 (43%), Gaps = 60/515 (11%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD + I MPM V   +  LA    G +   +   F+   +A R+   K++ + T D  L
Sbjct: 131 KGDVVTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRFVITADEGL 190

Query: 64  RGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDFL--SSVDY 113
           RGGR  PL   V  A          K IV+   GND  +P  E +DL ++D +  +S + 
Sbjct: 191 RGGRAIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDLMKNASAEC 249

Query: 114 HPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDV 171
            P P N   P++        +L++SG+TG PK +  T    +   +    ++ D   GDV
Sbjct: 250 QPEPMNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYVFDYHDGDV 301

Query: 172 YCWPTNLGWVMG-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSL 227
           Y    + GWV G   IL+    NGA   L++G    P     G+ V    V +L T P+ 
Sbjct: 302 YWCTADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVNILYTAPTA 361

Query: 228 VKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 285
           ++A   +  +C++G     ++   S GE   ++ + W     WY+ +I +      S   
Sbjct: 362 IRALMAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVIGN------SKCP 409

Query: 286 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-------------GEVGLFP 332
           I  +  Q +  G   +    A  +      +P+   QP +             G + +  
Sbjct: 410 IVDTWWQTETGGILISPLPGAVDLKPGSATLPFFGVQPALVDNEGNILEGKTEGNLVILD 469

Query: 333 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 392
            + G   R +  DHE         YKGM     GD  +R   GY  + GR DD +N+ G 
Sbjct: 470 SWPGQM-RTIYGDHERFVQTYFSTYKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGH 526

Query: 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSK 451
           +  + E+E      D+  +  AA+   P     + + ++V L +G   +P D+LK    +
Sbjct: 527 RLGTAEVESALVAHDK--VAEAAVVGYPHDIKGQGIYVYVTLVQG--EEPSDELKKELVQ 582

Query: 452 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
            ++ ++ P+    +++  P  P+T S K++RR+LR
Sbjct: 583 WVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 617

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 223/514 (43%), Gaps = 43/514 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + + MPM   A ++ LA    G V   +   F+   IA+R+   K+K I T D  +
Sbjct: 131 RGDIVTVYMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGV 190

Query: 64  RGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
           RGGR  PL + +  A          K IVL   G DV   +  +D+ W+  + +   H  
Sbjct: 191 RGGRIIPLKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCI 249

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
           P          +  + +L++SG+TG PK +  T    +   A    ++ D K G+VY   
Sbjct: 250 PEEMG-----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCT 304

Query: 176 TNLGWVMG-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW 231
            ++GW+ G   +++    NGAT+ +++G    P     G+ V    V +L T P+L++A 
Sbjct: 305 ADVGWITGHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRAL 364

Query: 232 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ 287
                      D + +R   S GE   ++ + W     WYN +I  E C   +       
Sbjct: 365 MAEGKEQFADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHCPIVDTWWQTET 418

Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G +L     GA  T   +A          ++D  G     D    G + +   + G   R
Sbjct: 419 GGILISPLPGATDTKPGSATRPFFGVQPALVDNMGNII--DGATEGNLVILDSWPGQM-R 475

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            +  DH+         ++GM     GD  KR   GY  + GR DD +N+ G +  + E+E
Sbjct: 476 TVFGDHDRFALTYFKTFRGMYFT--GDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVE 533

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A E + E A +   P     + +  +V L KG T + ++L+    K ++ ++  L
Sbjct: 534 SAL-VAHEHVAEAAVVGY-PHDIKGQGIYAYVTLTKG-TIETEELRQELRKWVRKEIGAL 590

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
               L++     P+T S K++RR LR    +E++
Sbjct: 591 ATPDLIQWAGGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella sediminis (strain HAW-EB3) (taxid: 425104)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   IA R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAIAGRIIDSSSRLVITADE 188

Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   GND+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDIDW-QEGRDLWWRDLIEKAS-- 245

Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302

Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362

Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418

Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis.

Salmonella typhi (taxid: 90370)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 223/514 (43%), Gaps = 43/514 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   A +  LA    G V   +   F+   IA+R+   K+K I T D  +
Sbjct: 131 RGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGM 190

Query: 64  RGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
           RGGR  PL   +  A          K IVL   G  V   + ++D+ W   + +      
Sbjct: 191 RGGRAIPLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS---- 245

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
             Y  P     +A + +L++SG+TG PK +  T    +   +    ++ D K G+VY   
Sbjct: 246 -EYCQPEEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCT 304

Query: 176 TNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW 231
            ++GW+ G   +++    NGAT+ +++G P   S    G+ +    V++L T P+L++A 
Sbjct: 305 ADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRAL 364

Query: 232 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ 287
                   +  D + +R   S GE   ++ + W     WY+ +I  E C   +       
Sbjct: 365 MAEGKQHFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTET 418

Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G +L     GA  T   +A          ++D  G     +    G + L   + G   R
Sbjct: 419 GGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-R 475

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            +  DHE         ++GM     GD  +R   GY  + GR DD +N+ G +  + E+E
Sbjct: 476 TVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE 533

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                    ++  AA+   P     + +  +V L +G T + ++L+    + ++ ++  L
Sbjct: 534 SAL--VSHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
               L++     P+T S K++RR LR    +E++
Sbjct: 591 ATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella baltica (strain OS195) (taxid: 399599)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 222/514 (43%), Gaps = 43/514 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   A +  LA    G V   +   F+   IA+R+   K+K I T D  +
Sbjct: 131 RGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGM 190

Query: 64  RGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
           RGGR  PL   +  A          K IVL   G  V   +  +D+ W   + +      
Sbjct: 191 RGGRAIPLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS---- 245

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
             Y  P     +A + +L++SG+TG PK +  T    +   +    ++ D K G+VY   
Sbjct: 246 -EYCQPEEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCT 304

Query: 176 TNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW 231
            ++GW+ G   +++    NGAT+ +++G P   S    G+ +    V++L T P+L++A 
Sbjct: 305 ADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRAL 364

Query: 232 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ 287
                   +  D + +R   S GE   ++ + W     WY+ +I  E C   +       
Sbjct: 365 MAEGKQHFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTET 418

Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G +L     GA  T   +A          ++D  G     +    G + L   + G   R
Sbjct: 419 GGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-R 475

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            +  DHE         ++GM     GD  +R   GY  + GR DD +N+ G +  + E+E
Sbjct: 476 TVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE 533

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                    ++  AA+   P     + +  +V L +G T + ++L+    + ++ ++  L
Sbjct: 534 SAL--VSHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
               L++     P+T S K++RR LR    +E++
Sbjct: 591 ATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella baltica (strain OS185) (taxid: 402882)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 222/514 (43%), Gaps = 43/514 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   A +  LA    G V   +   F+   IA+R+   K+K I T D  +
Sbjct: 131 RGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGM 190

Query: 64  RGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
           RGGR  PL   +  A          K IVL   G  V   +  +D+ W   + +      
Sbjct: 191 RGGRAIPLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS---- 245

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
             Y  P     +A + +L++SG+TG PK +  T    +   +    ++ D K G+VY   
Sbjct: 246 -EYCQPEEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCT 304

Query: 176 TNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW 231
            ++GW+ G   +++    NGAT+ +++G P   S    G+ +    V++L T P+L++A 
Sbjct: 305 ADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRAL 364

Query: 232 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ 287
                   +  D + +R   S GE   ++ + W     WY+ +I  E C   +       
Sbjct: 365 MAEGKQHFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTET 418

Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G +L     GA  T   +A          ++D  G     +    G + L   + G   R
Sbjct: 419 GGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-R 475

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            +  DHE         ++GM     GD  +R   GY  + GR DD +N+ G +  + E+E
Sbjct: 476 TVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE 533

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                    ++  AA+   P     + +  +V L +G T + ++L+    + ++ ++  L
Sbjct: 534 SAL--VSHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
               L++     P+T S K++RR LR    +E++
Sbjct: 591 ATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q54Z60|ACSA_DICDI Acetyl-coenzyme A synthetase OS=Dictyostelium discoideum GN=acsA PE=3 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 229/523 (43%), Gaps = 46/523 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +AI +P T  A+   LA    G +   I   F    I +R+  +K + I T D  L
Sbjct: 141 KGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVIITADEGL 200

Query: 64  RGGRKFPLYSK---VLGAAPLKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDYHPRP 117
           RGGR  PL  K   V+    L   VL  +  + G P    + S   W D  + +D+ P  
Sbjct: 201 RGGRYIPLKEKIDQVVQHCKLVQHVL--VFKNTGRPTITFNPSIDIWAD-EAMLDHRP-- 255

Query: 118 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPT 176
            Y  PV+   +  + IL++SG+TG PK +  TQ   +   A    ++ D    DVY    
Sbjct: 256 -YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVYACMA 314

Query: 177 NLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWR 232
           ++GW+ G   I++    NGAT  +++G+PL  +   + + VQ   +T   T P+ +++  
Sbjct: 315 DVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAIRSLM 374

Query: 233 N--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQG 288
               +  +  D + +R   S GE  N +   W ++       AI+++   TE       G
Sbjct: 375 KFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-----G 429

Query: 289 SLLQPQAFGAFSTATMTAG-------LVILD----ECGVPYPDDQPCVGEVGLFPL---Y 334
            L+ P   G  ST   +A        L +LD    E     PD   C    G+  +   +
Sbjct: 430 HLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAISKPW 488

Query: 335 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394
            G + R +   H       M  YKG      GD +K    GY  ++GR DD +N+ G + 
Sbjct: 489 PGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVSGHRL 545

Query: 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 454
            + E+E        SI   AA+   P     + ++ F  LK+G+      + M+  K ++
Sbjct: 546 GTAELESAL--VGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVR 603

Query: 455 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 497
           + + P     ++ + P  P+T S K++RR+LR    HE S   
Sbjct: 604 NVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESSAEQ 646

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 223/513 (43%), Gaps = 57/513 (11%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   AV+  LA    G +   +   F+   +A R+   K+K + T D  +
Sbjct: 131 RGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGV 190

Query: 64  RGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
           RGGR+ PL + V         ++  K IV    G D+    + +D+ ++D +     H  
Sbjct: 191 RGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAW-HQHRDIWYEDLMKVASSHCA 249

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
           P          +  + IL++SG+TG+PK +  T    +   A     + D + G+VY   
Sbjct: 250 PKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYRPGEVYWCT 304

Query: 176 TNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKA 230
            ++GWV G   I++    NGAT  L++G P    + R   K V    V +L T P+ ++A
Sbjct: 305 ADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILYTAPTAIRA 363

Query: 231 W--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYI 286
                   +EG D + +R   S GE  N +   W           I+++   TE     I
Sbjct: 364 MMAEGQAAVEGADGSSLRLLGSVGEPINPEAWNWYYKTVGKERCPIVDTWWQTETGGILI 423

Query: 287 Q----------GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 336
                      GS  +P  FG         G +I          D    G + +   + G
Sbjct: 424 SPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI----------DGAAEGNLVILDSWPG 472

Query: 337 ASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 393
            S R L  DH+   + YF+    ++GM     GD  +R   GY  + GR DD +N+ G +
Sbjct: 473 QS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHR 526

Query: 394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 453
             + EIE     A   + E A + V P     + + ++V L  G  +  ++L++     +
Sbjct: 527 MGTAEIESAM-VAHSKVAEAAVVGV-PHDIKGQGIYVYVTLNAGIEAS-EQLRLELKNWV 583

Query: 454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
           + ++ P+    +++  P  P+T S K++RR+LR
Sbjct: 584 RKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 616

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
225435726	727	PREDICTED: acetyl-coenzyme A synthetase	0.997	0.685	0.817	0.0
297746452	685	unnamed protein product [Vitis vinifera]	0.997	0.727	0.803	0.0
224052966	526	predicted protein [Populus trichocarpa]	0.997	0.946	0.803	0.0
255572274	625	acetyl-CoA synthetase, putative [Ricinus	1.0	0.798	0.791	0.0
380042388	727	acyl-activating enzyme 14 [Cannabis sati	0.995	0.683	0.801	0.0
357518845	770	Acetyl-coenzyme A synthetase [Medicago t	0.997	0.646	0.781	0.0
356525251	728	PREDICTED: acetyl-coenzyme A synthetase-	0.997	0.684	0.775	0.0
380042386	715	acyl-activating enzyme 13 [Cannabis sati	0.995	0.695	0.761	0.0
380042368	723	acyl-activating enzyme 4, partial [Canna	0.993	0.686	0.773	0.0
356510959	725	PREDICTED: acetyl-coenzyme A synthetase	0.997	0.686	0.764	0.0

>gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/498 (81%), Positives = 452/498 (90%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           FSKGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDF
Sbjct: 230 FSKGDAIAIDMPMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDF 289

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           I+RGGRKFPLYS+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS  D+ PRPN YS
Sbjct: 290 IVRGGRKFPLYSRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYS 349

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
           PVY P+DAV NILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWV
Sbjct: 350 PVYQPIDAVTNILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWV 409

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP IL++SFL GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLD
Sbjct: 410 MGPTILYASFLTGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLD 469

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           WTKI+SFASTGETSNVDDDLWLSS+A+Y  IIE CGGTEL+S+YIQGS+LQPQAFG FST
Sbjct: 470 WTKIKSFASTGETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFST 529

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
           A MT G VILDE GVPYPDDQPCVGEVGLFPL +GA+D LLNADHEEVYF+GMPMYKGM 
Sbjct: 530 AAMTTGFVILDENGVPYPDDQPCVGEVGLFPLIMGATDWLLNADHEEVYFKGMPMYKGMH 589

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LRRHGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADES+LE+AAIS +P 
Sbjct: 590 LRRHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESVLESAAISTAPL 649

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GGPE+LV+FVVLKKG+  +P++LKM FSKAIQ  LNPLFKV+ VK+VPEFPRTASNK+L
Sbjct: 650 NGGPELLVVFVVLKKGYDCEPNELKMKFSKAIQRNLNPLFKVNFVKIVPEFPRTASNKIL 709

Query: 482 RRVLRDQIKHELSVRSRI 499
           RRVLRDQIKHELSVRSRI
Sbjct: 710 RRVLRDQIKHELSVRSRI 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746452|emb|CBI16508.3| unnamed protein product [Vitis vinifera]

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/498 (80%), Positives = 447/498 (89%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           F+KGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA+EI TRLRVSKAKGIFTQDF
Sbjct: 188 FTKGDAIAIDMPMTVYAVIIYLAIVLAGFVVVSIADSFAAKEITTRLRVSKAKGIFTQDF 247

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           I+R GRKFPLYS+V+ AAP K I+LPAIG DV + LREQDLSWKDFLS  D+ PRPNYYS
Sbjct: 248 IVRRGRKFPLYSRVVEAAPHKVILLPAIGKDVNVQLREQDLSWKDFLSRADHLPRPNYYS 307

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
           PVY P+DAV NILFSSGTTG+PKAIPWTQ+S IR  A+ WA  +++VGDV CWPTNLGW+
Sbjct: 308 PVYQPIDAVTNILFSSGTTGDPKAIPWTQVSPIRSAADAWAQSNIQVGDVLCWPTNLGWM 367

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP I+++SFL GA LALY GSPL+R FGKFVQDAGVT+LGTVPSLVK W+NT C+EGLD
Sbjct: 368 MGPFIIYASFLTGAALALYHGSPLDRGFGKFVQDAGVTILGTVPSLVKTWKNTGCMEGLD 427

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           WTKI+SFASTGETSNVDDDLWLSS+A Y  IIE CGGTEL+S+YIQGS+ QPQAFGAFS+
Sbjct: 428 WTKIKSFASTGETSNVDDDLWLSSRAHYKPIIECCGGTELASSYIQGSMFQPQAFGAFSS 487

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
             MT G VILDE GVPYPDDQPCVGEVGLFPL +GA+DRLLNADHEEVYF+GMP+YKGM 
Sbjct: 488 TAMTTGFVILDENGVPYPDDQPCVGEVGLFPLIMGATDRLLNADHEEVYFKGMPIYKGMH 547

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LR+HGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADESILE+AAIS +P 
Sbjct: 548 LRKHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESILESAAISTAPL 607

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GGPE+LV+FVVLKKG+  +PD+LKM FSKAIQ  LNPLFKVS VK+VPEFPRTASNK+L
Sbjct: 608 NGGPEMLVVFVVLKKGYNCEPDELKMKFSKAIQRNLNPLFKVSFVKIVPEFPRTASNKIL 667

Query: 482 RRVLRDQIKHELSVRSRI 499
           RRVLRDQIKHELSV SRI
Sbjct: 668 RRVLRDQIKHELSVWSRI 685

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052966|ref|XP_002297640.1| predicted protein [Populus trichocarpa] gi|222844898|gb|EEE82445.1| predicted protein [Populus trichocarpa]

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/498 (80%), Positives = 449/498 (90%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           F+KGDAIAIDMPMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRLRVS AKGIFTQDF
Sbjct: 29  FTKGDAIAIDMPMTVNAVIIYLAIVLAGFVVVSIADSFAAKEIATRLRVSNAKGIFTQDF 88

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           ILRGGRKFPLYS+V+ A   KAIV+P IGNDVG+ LR QD +W DFLSS  +  RPNYYS
Sbjct: 89  ILRGGRKFPLYSRVVEANSCKAIVIPVIGNDVGLQLRNQDQTWIDFLSSYSFSDRPNYYS 148

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
           PVY PVD++ NILFSSGTTG+PKAI WT LS IRC+ +GWAH+D++ GDVYCWPTNLGWV
Sbjct: 149 PVYQPVDSLTNILFSSGTTGDPKAIGWTHLSPIRCSHDGWAHVDIQEGDVYCWPTNLGWV 208

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP++L+S+FL GATLAL+ GSPL R FGKFVQDAGVTVLGTVPS+VKAW++TNC+EGLD
Sbjct: 209 MGPILLYSTFLCGATLALFHGSPLSRGFGKFVQDAGVTVLGTVPSIVKAWKSTNCMEGLD 268

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           WTK++SF STGE SNVDDDLWLSS+A+Y  IIE CGGTEL+S+YIQG  LQPQAFGAFST
Sbjct: 269 WTKLKSFCSTGEASNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGCPLQPQAFGAFST 328

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
           A+MT G VILDE GV YPDD PCVGEVGL PL +GASDRLLNADH++VYF+GMPMYKGM 
Sbjct: 329 ASMTTGFVILDENGVSYPDDMPCVGEVGLSPLLMGASDRLLNADHDKVYFKGMPMYKGMQ 388

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LRRHGDIIKRTVGGY +VQGRADDTMNLGGIKTSSVEIERVCD+A+ESI+ETAAISV+P 
Sbjct: 389 LRRHGDIIKRTVGGYFVVQGRADDTMNLGGIKTSSVEIERVCDRAEESIMETAAISVAPV 448

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GGPE+LVIFVVLKKGF  +PDKLKM FSKAIQ+ LNPLFKVS VK+VPEFPRTASNKLL
Sbjct: 449 DGGPELLVIFVVLKKGFDGEPDKLKMKFSKAIQNNLNPLFKVSFVKIVPEFPRTASNKLL 508

Query: 482 RRVLRDQIKHELSVRSRI 499
           RRVLRDQ+KHELSVRS+I
Sbjct: 509 RRVLRDQMKHELSVRSKI 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572274|ref|XP_002527076.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223533581|gb|EEF35320.1| acetyl-CoA synthetase, putative [Ricinus communis]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/499 (79%), Positives = 448/499 (89%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
           +F+KGDAIAIDMPMTV AVIIYLAI+LAG VVVSIADSFAA+EIA+RLR+S AK IFTQD
Sbjct: 127 VFTKGDAIAIDMPMTVNAVIIYLAIVLAGCVVVSIADSFAAKEIASRLRISNAKAIFTQD 186

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
           FI+RGGRKFPLYS+V+ AAP KAIVL  IGNDV IPLR+QDLSWKDFLSSV + PR NY+
Sbjct: 187 FIVRGGRKFPLYSRVVEAAPHKAIVLSVIGNDVSIPLRQQDLSWKDFLSSVIHLPRRNYF 246

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           SPVY PVD++ NILFSSGTTGEPKAI WTQLS IR  ++ WAH+D++ GDVYCWPTNLGW
Sbjct: 247 SPVYQPVDSMTNILFSSGTTGEPKAIVWTQLSPIRSASDAWAHLDVQAGDVYCWPTNLGW 306

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           VMGP++L+S FL GATLAL+ GSPL R FGKF+Q+AGVT+LGTVPSLVKAW++TNC+EGL
Sbjct: 307 VMGPILLYSCFLTGATLALFHGSPLGREFGKFIQNAGVTILGTVPSLVKAWKSTNCMEGL 366

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           DWTKI+SF STGE SNVDDDLWLSS+ +Y  IIE CGGTEL+S+YIQG  LQPQAFGAFS
Sbjct: 367 DWTKIKSFGSTGEASNVDDDLWLSSRTYYKPIIECCGGTELASSYIQGCPLQPQAFGAFS 426

Query: 301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
           TA+MT G VILDE GVPYPD QPC GEVGLFP+YLGAS+RLLNADH EVYF+GMPM+KGM
Sbjct: 427 TASMTTGFVILDENGVPYPDGQPCSGEVGLFPVYLGASERLLNADHYEVYFKGMPMFKGM 486

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
           CLRRHGDI+KRTV GY IVQGRADDTMNLGGIKTSSVEIE VCD+AD+SI+ETAAISV+P
Sbjct: 487 CLRRHGDILKRTVRGYFIVQGRADDTMNLGGIKTSSVEIEHVCDRADKSIIETAAISVAP 546

Query: 421 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 480
             GGPE+LVIFVVLK G   +PDKLKM FSKA+Q+ LNPLFKVS VK+VPEFPRTASNKL
Sbjct: 547 VDGGPELLVIFVVLKNGSNGEPDKLKMKFSKALQTNLNPLFKVSFVKIVPEFPRTASNKL 606

Query: 481 LRRVLRDQIKHELSVRSRI 499
           LRRVLRDQ+KHELS++S+I
Sbjct: 607 LRRVLRDQMKHELSIQSKI 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/499 (80%), Positives = 441/499 (88%), Gaps = 2/499 (0%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
           MFSKGDAIAIDMPMT  AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQD
Sbjct: 231 MFSKGDAIAIDMPMTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQD 290

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
           FILRG RKFPLYS+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV    R   Y
Sbjct: 291 FILRGSRKFPLYSRVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNY 348

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           SP Y PVD ++NILFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGW
Sbjct: 349 SPCYQPVDTLINILFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGW 408

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           VMGP+++FSSFL+GATLALY GSPL   FGKFVQDAGVT LGTVPSLVKAW+NT C+ GL
Sbjct: 409 VMGPILIFSSFLSGATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGL 468

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           DWTKI+ FASTGETSNVDDDLWLSS+A+Y  +IE CGGTELSS+YIQGSLLQPQAFGAFS
Sbjct: 469 DWTKIKCFASTGETSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFS 528

Query: 301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
           T +MT  LVILDE G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+GMP+YKGM
Sbjct: 529 TTSMTTSLVILDEHGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKGMPLYKGM 588

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
            LRRHGDIIKRTVGGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP
Sbjct: 589 RLRRHGDIIKRTVGGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSP 648

Query: 421 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 480
             GGPE LV+FVVLK G+ S+ + L+  FSKAIQS LNPLFKV  VK+VPEFPRTASNKL
Sbjct: 649 VDGGPEQLVMFVVLKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKL 708

Query: 481 LRRVLRDQIKHELSVRSRI 499
           LRRVLRDQIKHELS  SRI
Sbjct: 709 LRRVLRDQIKHELSAHSRI 727

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518845|ref|XP_003629711.1| Acetyl-coenzyme A synthetase [Medicago truncatula] gi|355523733|gb|AET04187.1| Acetyl-coenzyme A synthetase [Medicago truncatula]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/498 (78%), Positives = 439/498 (88%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           FSKGDAIAIDM MTV +VIIYLAI+LAG VVVSIADSFA +EIATRLRVS AKGIFTQDF
Sbjct: 273 FSKGDAIAIDMQMTVNSVIIYLAIVLAGCVVVSIADSFAPKEIATRLRVSDAKGIFTQDF 332

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           ILRGG+KFPLYS+V+ AA  K IVLP IGND+G+ LREQDLSW  FLSS   +PR ++YS
Sbjct: 333 ILRGGKKFPLYSRVVEAAACKVIVLPVIGNDIGVQLREQDLSWNSFLSSGKQNPRSHHYS 392

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
           P+Y  +D+V NILFSSGTTG+PKAIPWTQLS IR  A+GWA ID++ GDVYCWPTNLGWV
Sbjct: 393 PIYQSIDSVTNILFSSGTTGDPKAIPWTQLSPIRSAADGWALIDIQPGDVYCWPTNLGWV 452

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP +L+S FL+GATLALY GSPL   FGKFVQDAGVT+LGTVPSLVK W++T C+EGLD
Sbjct: 453 MGPTLLYSCFLSGATLALYHGSPLGHGFGKFVQDAGVTILGTVPSLVKTWKSTQCMEGLD 512

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           WTKI+ F STGETSNVDDDLWLSSK++Y  IIE CGGTEL+S YI GSLLQPQAFGAFST
Sbjct: 513 WTKIKKFCSTGETSNVDDDLWLSSKSYYKPIIECCGGTELASCYIMGSLLQPQAFGAFST 572

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
           A++T GLVILDE GVPYPDD PCVGEVGLFP+ +GA+DRLLNADHE++YF GMP+YKG  
Sbjct: 573 ASLTTGLVILDENGVPYPDDVPCVGEVGLFPVSMGATDRLLNADHEKIYFEGMPLYKGKV 632

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LRRHGDIIKRTVGG+++VQGRADDTMNLGGIKTSSVEIERVCD+ADE ILETAA+SVSPA
Sbjct: 633 LRRHGDIIKRTVGGHLVVQGRADDTMNLGGIKTSSVEIERVCDRADECILETAAVSVSPA 692

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GGPE LVIFVVLKKG+ S  + LK  FSKAIQ+ LNPLFK+SLVK+VP FPRTASNK+L
Sbjct: 693 NGGPEQLVIFVVLKKGYDSDAETLKKKFSKAIQTNLNPLFKISLVKIVPMFPRTASNKIL 752

Query: 482 RRVLRDQIKHELSVRSRI 499
           RRVLRDQ+KHELSV SR+
Sbjct: 753 RRVLRDQMKHELSVHSRL 770

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525251|ref|XP_003531240.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/498 (77%), Positives = 436/498 (87%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           FSKGDAIAIDM MTV AVIIYLAI+LAG VVVSIADSFA +EIATRLRVSKAKGIFTQDF
Sbjct: 231 FSKGDAIAIDMQMTVNAVIIYLAIVLAGCVVVSIADSFAPKEIATRLRVSKAKGIFTQDF 290

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           I RGGRKFPLYS+V+ AA  K IVLP IG+D+G+ LR+ D+SWK FLSS   HPR ++YS
Sbjct: 291 ISRGGRKFPLYSRVIEAAACKVIVLPVIGDDLGVQLRDCDISWKVFLSSSRQHPRSHHYS 350

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
           P+   +D V NILFSSGTTGEPKAIPWTQLS IR  A+ WA ID++ GDVYCWPTNLGWV
Sbjct: 351 PIIQSIDTVTNILFSSGTTGEPKAIPWTQLSPIRSAADAWAFIDIQPGDVYCWPTNLGWV 410

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP +++S FL+GATLALY GSPL   FGKFVQDAGVT+LGTVPSLVK W++T C+EGLD
Sbjct: 411 MGPTLIYSCFLSGATLALYHGSPLGHGFGKFVQDAGVTILGTVPSLVKTWKSTQCMEGLD 470

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           WTKI+ F STGETSNVDDDLWLSSK++Y  IIE CGGTEL+S+YI GS LQPQAFGAFST
Sbjct: 471 WTKIKIFCSTGETSNVDDDLWLSSKSYYKPIIECCGGTELASSYIIGSPLQPQAFGAFST 530

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
           A+MT GLVILDE GVPYP+D  CVGEVGLFP+Y+GA+DRLLNAD+EEVYF+GMP+YKG  
Sbjct: 531 ASMTTGLVILDENGVPYPEDVACVGEVGLFPIYMGATDRLLNADNEEVYFKGMPIYKGKV 590

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LRRHGDIIKRTVGG+ +VQGRADDTMN+GGIKTSSVEIERVCD+ADE ILETAAISV+PA
Sbjct: 591 LRRHGDIIKRTVGGHFVVQGRADDTMNIGGIKTSSVEIERVCDRADEGILETAAISVAPA 650

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GGPE LVIF VLKKG+ S  + LK  FSKAIQS LNPLFKVSLVK+VP+FPRTASNKLL
Sbjct: 651 NGGPEQLVIFAVLKKGYNSNAETLKRKFSKAIQSNLNPLFKVSLVKIVPDFPRTASNKLL 710

Query: 482 RRVLRDQIKHELSVRSRI 499
           RRVLRDQ+K ELS++SR+
Sbjct: 711 RRVLRDQMKRELSIQSRL 728

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/499 (76%), Positives = 432/499 (86%), Gaps = 2/499 (0%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
           MFSKGDAIA+DMPMT  AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQD
Sbjct: 219 MFSKGDAIAMDMPMTANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQD 278

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
           FILRGGRKFPLYS+V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV    R   Y
Sbjct: 279 FILRGGRKFPLYSRVVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--Y 336

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           SP Y PVD+++NILFSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW
Sbjct: 337 SPCYQPVDSLINILFSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGW 396

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
            +GP ILF+ FL+GA LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GL
Sbjct: 397 ALGPFILFTCFLSGAVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGL 456

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           DWTKI+SFASTGETSNVDDDLWLSS+A+Y  +IE CGGTEL+S+YIQGSLLQPQAFGAF+
Sbjct: 457 DWTKIKSFASTGETSNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFN 516

Query: 301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
           TATMT   VI+DE G PYPDDQ C GEVGL PLYLGASDRLLNADHEEVYF+GMP+YKGM
Sbjct: 517 TATMTTSFVIIDEHGNPYPDDQACTGEVGLIPLYLGASDRLLNADHEEVYFKGMPLYKGM 576

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
            LRRHGDII RTVGGY IVQGRADDTMNLGGIKTSS EIE VCD+AD+SILETAA+SVSP
Sbjct: 577 RLRRHGDIINRTVGGYFIVQGRADDTMNLGGIKTSSFEIEHVCDRADDSILETAAVSVSP 636

Query: 421 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 480
            GGGPE LV+FVVLK G+ ++ + L+  FSKAIQS LNPLFKV+ VK+V EFPRT SNKL
Sbjct: 637 IGGGPEQLVMFVVLKNGYDAEAENLRTKFSKAIQSNLNPLFKVTAVKIVHEFPRTMSNKL 696

Query: 481 LRRVLRDQIKHELSVRSRI 499
           LRRVLRDQ+  E S++S+I
Sbjct: 697 LRRVLRDQLNREFSIQSKI 715

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/499 (77%), Positives = 427/499 (85%), Gaps = 3/499 (0%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
           MFSKGDAIAIDMPMT  AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQD
Sbjct: 228 MFSKGDAIAIDMPMTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQD 287

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
           FILRG RKFPLYS+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV    R   Y
Sbjct: 288 FILRGSRKFPLYSRVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNY 345

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           SP Y PVD ++NILFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGW
Sbjct: 346 SPCYQPVDTLINILFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGW 405

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           VMGP+++FSSFL+GATLALY GSPL   FGKFVQDAGVT LGTVPSLVKAW+NT C+ GL
Sbjct: 406 VMGPILIFSSFLSGATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGL 465

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           DWTKI+ FASTGETSNVDDDLWLSS+A+Y  +IE CGGTELSS+YIQGSLLQPQAFGAFS
Sbjct: 466 DWTKIKCFASTGETSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFS 525

Query: 301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
           T +MT  LVILDE G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+    Y   
Sbjct: 526 TTSMTTSLVILDEHGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKEC-HYTKE 584

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
           C        +RTVGGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP
Sbjct: 585 CASETWRYYQRTVGGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSP 644

Query: 421 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 480
             GGPE LV+FVVLK G+ S+ + L+  FSKAIQS LNPLFKV  VK+VPEFPRTASNKL
Sbjct: 645 VDGGPEQLVMFVVLKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKL 704

Query: 481 LRRVLRDQIKHELSVRSRI 499
           LRRVLRDQIKHELS  SRI
Sbjct: 705 LRRVLRDQIKHELSAHSRI 723

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510959|ref|XP_003524200.1| PREDICTED: acetyl-coenzyme A synthetase 1-like [Glycine max]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/500 (76%), Positives = 433/500 (86%), Gaps = 2/500 (0%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           FS+GDAIAIDM MT  AVIIYLAI+LAG  VVSIADSFA +EIATRLRVSKAKGIFTQDF
Sbjct: 226 FSRGDAIAIDMQMTANAVIIYLAIVLAGCAVVSIADSFAPKEIATRLRVSKAKGIFTQDF 285

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPRPNY 119
           I RGGRKFPLYS+V+ AA  K IVLP +G DVG+ LREQDLSWK FLSS +   +PR ++
Sbjct: 286 IARGGRKFPLYSRVIEAATCKVIVLPVMGEDVGVQLREQDLSWKGFLSSANQTQNPRSDH 345

Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 179
           YSP Y  VD+V NILFSSGTTG+PKAIPWTQL+ IR  A+GWA ID+K GDVYCWPTNLG
Sbjct: 346 YSPSYQSVDSVTNILFSSGTTGDPKAIPWTQLAPIRSAADGWAAIDIKPGDVYCWPTNLG 405

Query: 180 WVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239
           WV+GP +L+  FL GATLALY GSP  R FGKFVQDAGVT+LGTVPSLVKAW++T C+EG
Sbjct: 406 WVIGPTVLYHCFLTGATLALYHGSPQGRDFGKFVQDAGVTILGTVPSLVKAWKSTQCMEG 465

Query: 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 299
           LDWTKI++F S+GETSNVDDDLWLSSKA+Y+ I+E CGGTEL+S+YI GS LQPQAFGAF
Sbjct: 466 LDWTKIKTFCSSGETSNVDDDLWLSSKAYYSPIVELCGGTELASSYIAGSPLQPQAFGAF 525

Query: 300 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKG 359
           STA+MT G VILDE GVPYPDD  CVGEVGLFPL LGASDRLLNADHE+VYF+GMP+YK 
Sbjct: 526 STASMTTGFVILDENGVPYPDDVACVGEVGLFPLSLGASDRLLNADHEKVYFKGMPIYKE 585

Query: 360 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 419
             LRRHGDIIKRTV GYI+VQGRADDTMNLGGIKTSSVEIERVCD ADE ILETAA+ V+
Sbjct: 586 KILRRHGDIIKRTVDGYIVVQGRADDTMNLGGIKTSSVEIERVCDGADECILETAAVGVA 645

Query: 420 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
            A  GPE LVIFVVLK+G+ S  + LKM F+KAIQS LNPLFKVSLVK+VP+FPRT+SNK
Sbjct: 646 IANRGPEQLVIFVVLKEGYNSSAETLKMKFTKAIQSNLNPLFKVSLVKIVPDFPRTSSNK 705

Query: 480 LLRRVLRDQIKHELSVRSRI 499
           +LRRV+RDQ+K +LSV+SR+
Sbjct: 706 ILRRVMRDQMKLQLSVQSRL 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
TAIR|locus:2035721	727	AAE18 "acyl-activating enzyme	0.997	0.685	0.750	3.4e-203
TAIR|locus:2178277	721	AAE17 "acyl-activating enzyme	0.963	0.667	0.578	3.5e-146
TIGR_CMR|BA_2553	646	BA_2553 "acetoacetyl-CoA synth	0.929	0.718	0.291	6.4e-44
DICTYBASE|DDB_G0277815	674	acsA "acetyl-CoA synthetase" [	0.953	0.706	0.272	6.7e-34
TIGR_CMR|CPS_3955	648	CPS_3955 "acetyl-CoA synthetas	0.935	0.720	0.258	1.9e-28
UNIPROTKB|P27550	652	acs [Escherichia coli K-12 (ta	0.935	0.716	0.258	2.6e-28
TIGR_CMR|SO_2743	650	SO_2743 "acetyl-coenzyme A syn	0.943	0.724	0.247	6e-28
POMBASE|SPCC191.02c	662	SPCC191.02c "acetyl-CoA ligase	0.951	0.717	0.251	1.5e-27
CGD|CAL0001207	671	ACS2 [Candida albicans (taxid:	0.943	0.701	0.253	3.6e-27
UNIPROTKB|Q8NJN3	671	ACS2 "Acetyl-coenzyme A synthe	0.943	0.701	0.253	3.6e-27

TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 1966 (697.1 bits), Expect = 3.4e-203, P = 3.4e-203
 Identities = 376/501 (75%), Positives = 429/501 (85%)

Query:     2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             F KGD IAIDMPMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+
Sbjct:   227 FEKGDTIAIDMPMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDY 286

Query:    62 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYY 120
             ILRGGR+FPLYS+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+   H    NYY
Sbjct:   287 ILRGGRRFPLYSRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYY 346

Query:   121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
              P+Y PV++V+NILFSSGTTGEPKAIPWTQLS IR   +GWAH+D++VG  YCWPTNLGW
Sbjct:   347 RPIYLPVESVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGW 406

Query:   181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
             VMGP ++FS FL GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL
Sbjct:   407 VMGPTLMFSCFLTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGL 466

Query:   241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
             +WTKI+ FA+TGE SNVDD LWLSSKA Y  +IE CGGTEL+S+YI GS LQPQAFGAFS
Sbjct:   467 NWTKIKFFATTGEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFS 526

Query:   301 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
             T +MT  ++I DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK  
Sbjct:   527 TPSMTTRIIIFDENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKET 586

Query:   361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 420
              LRRHGDI+KRTVGGY  VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P
Sbjct:   587 RLRRHGDIVKRTVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTP 646

Query:   421 AGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
               GGPE+LVIF VLK+GF  Q  ++LKM FS+ IQ  LNPLFKVS VK+VPEFPRTAS+K
Sbjct:   647 PNGGPELLVIFAVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSK 706

Query:   480 LLRRVLRDQIKHEL-SVRSRI 499
             LLRRVLRDQIK EL S+RSRI
Sbjct:   707 LLRRVLRDQIKQELLSLRSRI 727

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IMP

TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 281/486 (57%), Positives = 349/486 (71%)

Query:     7 AIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGG 66
             AIA+DMPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG 
Sbjct:   229 AIAVDMPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGD 288

Query:    67 RKFPLYSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYN 125
             +  PLY +V+ A APL AIV+PA G+   + LRE+DLSW +FL +   + R   Y     
Sbjct:   289 KSIPLYRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEK 346

Query:   126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 185
             P  A  NILFSSGTTGEPKAIPWT +S ++  A+ W H+D++ GDV  WPTNLGW+MGP 
Sbjct:   347 PAGAYTNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPW 406

Query:   186 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 245
             ++++S +NGA + LY GSPL  +F KFVQDA V+VLG +PS+V+ W+N+N   G DW++I
Sbjct:   407 LVYASLINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRI 466

Query:   246 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 305
             R F STGE SN+D+ LWL  +A Y  +IE CGGTE+  ++I GSLLQPQ+  AFSTA M 
Sbjct:   467 RCFGSTGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMG 526

Query:   306 AGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH 365
               L ILDE   P P     VGE+ L P   GAS  LLN +H +VYF+GMP ++G  LRRH
Sbjct:   527 CKLFILDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRH 586

Query:   366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
             GD+ +RT  GY    GRADDTMNLGGIK  S+EIERVC+  D+S+LETAAI V P  GGP
Sbjct:   587 GDLFERTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGP 646

Query:   426 EVLVIFVVLKKGFTSQPDK--LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
             E LVI VV K    S PD   LK  F+  IQ KLNPLFKVS V  +P  PRTA+NK++RR
Sbjct:   647 EQLVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRR 706

Query:   484 VLRDQI 489
             VLR Q+
Sbjct:   707 VLRQQL 712

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0005829 "cytosol" evidence=RCA

TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 145/497 (29%), Positives = 243/497 (48%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD + I MPM    V+  LA++  G ++  I   FA+  + TR++ + +K I T D   
Sbjct:   138 KGDRVTIYMPMIPETVVAMLAVMKIGAIISPIFSGFASDAVMTRVQAAGSKMIITADGFS 197

Query:    64 RGGRKFPLYSKVLGAA---PL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 118
             R G+   L  +V  A    P   K +++   GND   P    D SW    S+++   +P 
Sbjct:   198 RRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGNDF-TP-HNYDFSW----STLEKE-KPF 250

Query:   119 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTN 177
              ++   +  D ++ ++++SGTTG+PK    T     ++   +    +++K GD   W T+
Sbjct:   251 VHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHAGFPLKAAFDAGFGMNIKQGDRVLWVTD 309

Query:   178 LGWVMGPVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAW-- 231
             +GW+MGP +LF S +NGAT+ +Y+G P     +R + + V    +T LG  P+L++A   
Sbjct:   310 MGWMMGPFLLFGSLINGATMVMYEGVPDFPKADRLW-ETVDKYEITHLGISPTLIRALMA 368

Query:   232 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGS 289
             +    +       +  FASTGE  N D  +WL      +   I    GGTE+S       
Sbjct:   369 KGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLFETVGKSNVPICNYSGGTEISGGIFGNV 428

Query:   290 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEV 349
             L++P A  +F+ +      V+LD+ G P  D+   VGE+ L   ++G +      D E  
Sbjct:   429 LIKPIAPISFNASLPGMAAVVLDDQGNPIRDE---VGELCLEKPWVGMTKSFWE-DDERY 484

Query:   350 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 409
                    ++   +  HGD +      YII  GR+DDT+N+ G +    E E +  + ++ 
Sbjct:   485 VNTYWSRFENKWV--HGDWVVYDGEQYIIT-GRSDDTLNIAGKRIGPAEYESILVKHND- 540

Query:   410 ILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVV 469
             ++E AAI V     G EV   FVVL+   T   +  K + S  + S +        + VV
Sbjct:   541 VIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTGELKKELMS-LVNSHIGKALCPKDIHVV 598

Query:   470 PEFPRTASNKLLRRVLR 486
              + P+T ++K++RRV++
Sbjct:   599 EDLPKTRNSKVMRRVIK 615

GO:0016877 "ligase activity, forming carbon-sulfur bonds" evidence=ISS

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=ISS

DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 375 (137.1 bits), Expect = 6.7e-34, P = 6.7e-34
 Identities = 141/518 (27%), Positives = 230/518 (44%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD +AI +P T  A+   LA    G +   I   F    I +R+  +K + I T D  L
Sbjct:   141 KGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVIITADEGL 200

Query:    64 RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDYHPRPNY 119
             RGGR  PL  K+       K +    +  + G P    + S   W D  + +D+ P   Y
Sbjct:   201 RGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDHRP---Y 256

Query:   120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL 178
               PV+   +  + IL++SG+TG PK +  TQ   +   A    ++ D    DVY    ++
Sbjct:   257 CPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVYACMADV 316

Query:   179 GWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRN- 233
             GW+ G   I++    NGAT  +++G+PL  +   + + VQ   +T   T P+ +++    
Sbjct:   317 GWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAIRSLMKF 376

Query:   234 -TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSL 290
               +  +  D + +R   S GE  N +   W ++       AI+++   TE       G L
Sbjct:   377 PISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-----GHL 431

Query:   291 LQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y--PDDQPCVGEVGLFPL---YLG 336
             + P   G  ST   +A     G  L +LD + G   Y  PD   C    G+  +   + G
Sbjct:   432 ITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAISKPWPG 490

Query:   337 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
              + R +   H       M  YKG      GD +K    GY  ++GR DD +N+ G +  +
Sbjct:   491 IA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVSGHRLGT 547

Query:   397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 456
              E+E        SI   AA+   P     + ++ F  LK+G+      + M+  K +++ 
Sbjct:   548 AELESALVGC--SICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRNV 605

Query:   457 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
             + P     ++ + P  P+T S K++RR+LR    HE S
Sbjct:   606 IGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESS 643

GO:0016208 "AMP binding" evidence=IEA;ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS

GO:0003987 "acetate-CoA ligase activity" evidence=IEA;ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 339 (124.4 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 129/500 (25%), Positives = 208/500 (41%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD + I MPM        LA    G +   +   F+   I  R+  +  K + T D  L
Sbjct:   131 KGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVITADQSL 190

Query:    64 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
             RGG++ PL S V  A     I  P + + + +     D++W D +  ++Y       S +
Sbjct:   191 RGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAVAKQSAI 245

Query:   124 YNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL 178
               P  +DA   + +L++SG+TG PK +  T    I   A    ++ D K G+VY    + 
Sbjct:   246 CEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVYWCTADA 305

Query:   179 GWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLVKAWRNT 234
             GW+ G   I +    NGAT  +++G P     G+F Q      V V  T P+ ++A  + 
Sbjct:   306 GWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAIRALMSI 365

Query:   235 --NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSL 290
               + +   D + +R   + GE  N   + W     WY  ++   +C   +       G +
Sbjct:   366 GDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVVGKSNCPIVDTWWQTETGGI 419

Query:   291 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-GE-VGLFPLYLGASDRL--LNADH 346
             L     GA       AG          +  D   + GE  GL  +      +L  +  DH
Sbjct:   420 LITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGLLVMTASWPGQLRTVYGDH 479

Query:   347 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 406
                Y   +  Y G      GD  KR   GY  + GR DD +N+ G +  + EIE      
Sbjct:   480 NRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL-VL 536

Query:   407 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 466
               ++ E A +       G  V   +V L  G  ++ D+L +   + +  +L    K   +
Sbjct:   537 HPAVAEAAVVGYPHEIKGQGVYC-YVTLM-GNATESDELNVELREFVAKELGRFAKPDYI 594

Query:   467 KVVPEFPRTASNKLLRRVLR 486
             +  P  P+T S K++RR+LR
Sbjct:   595 QWSPGLPKTRSGKIMRRILR 614

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)]

 Score = 338 (124.0 bits), Expect = 2.6e-28, P = 2.6e-28
 Identities = 130/502 (25%), Positives = 209/502 (41%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D  +
Sbjct:   131 KGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITSDEGV 190

Query:    64 RGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSSV-DYHP 115
             R GR  PL   V  A   P        +VL   G  +      +DL W D +    D H 
Sbjct:   191 RAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQASDQHQ 249

Query:   116 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCW 174
                      N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y  
Sbjct:   250 AEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWC 303

Query:   175 PTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKA 230
               ++GWV G   +L+     GAT  +++G P         + V    V +L T P+ ++A
Sbjct:   304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRA 363

Query:   231 W--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTELSSAYI 286
                     +EG D + +R   S GE  N +   W   K       ++++   TE +  ++
Sbjct:   364 LMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTE-TGGFM 422

Query:   287 QGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA 344
                L       A S      G+   ++D  G P   +    G + +   + G + R L  
Sbjct:   423 ITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--EGATEGSLVITDSWPGQA-RTLFG 479

Query:   345 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
             DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE    
Sbjct:   480 DHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL- 536

Query:   405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
              A   I E A + + P     + +  +V L  G    P+    +    ++ ++ PL    
Sbjct:   537 VAHPKIAEAAVVGI-PHNIKGQAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIGPLATPD 594

Query:   465 LVKVVPEFPRTASNKLLRRVLR 486
             ++      P+T S K++RR+LR
Sbjct:   595 VLHWTDSLPKTRSGKIMRRILR 616

GO:0003987 "acetate-CoA ligase activity" evidence=IEA;IDA;IPI

GO:0005575 "cellular_component" evidence=IDA

GO:0045733 "acetate catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050218 "propionate-CoA ligase activity" evidence=IDA

TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 335 (123.0 bits), Expect = 6.0e-28, P = 6.0e-28
 Identities = 127/514 (24%), Positives = 223/514 (43%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             +GD + I MPM   A +  LA    G V   +   F+   IA+R+   K+K + T D  +
Sbjct:   131 RGDIVTIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGM 190

Query:    64 RGGRKFPLYSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
             RGGR  PL   +  A   P      K IVL   G  +   +  +D+ W   + +   H  
Sbjct:   191 RGGRAIPLKRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCA 249

Query:   117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 175
                     +P+     +L++SG+TG PK +  T    +   +    ++ D K G++Y   
Sbjct:   250 VEEMG-AEDPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCT 304

Query:   176 TNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW 231
              ++GW+ G   +++    NGAT+ +++G P   S    G+ +    V +L T P+L++A 
Sbjct:   305 ADVGWITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRAL 364

Query:   232 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQ 287
                     +  + + +R   S GE  N   + W     WY+ +I  E C   +       
Sbjct:   365 MAEGKQHFDKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHCPIVDTWWQTET 418

Query:   288 GSLLQPQAFGAFSTATMTA-----GL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
             G +L     GA  T   +A     G+   ++D  G     +    G + L   + G   R
Sbjct:   419 GGILITPLPGATDTKPGSATRPFFGVQPALVDNMGNIL--EGATEGNLVLLDSWPGQM-R 475

Query:   341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
              +  DHE         ++GM     GD  +R   GY  + GR DD +N+ G +  + E+E
Sbjct:   476 TVYGDHERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVE 533

Query:   401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                  + E + E A +   P     + +  +V L +G T + ++L+    + ++ ++  L
Sbjct:   534 SAL-VSHELVAEAAVVGY-PHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGAL 590

Query:   461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
                 L++     P+T S K++RR LR    +E++
Sbjct:   591 ATPDLIQWATGLPKTRSGKIMRRFLRKIAANEVT 624

GO:0003987 "acetate-CoA ligase activity" evidence=ISS

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=ISS

POMBASE|SPCC191.02c SPCC191.02c "acetyl-CoA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 332 (121.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 127/505 (25%), Positives = 219/505 (43%)

Query:     5 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 64
             GD +AI MPM    +I  LAI+  G +   I   F+A  +A R+  S+ K I T D   R
Sbjct:   142 GDRVAIYMPMIPETIIAMLAIVRLGAIHSVIFAGFSAESVADRVNDSECKVIITADESHR 201

Query:    65 GGRKFPL---YSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 119
             GG++ PL    +K L   P   K +V           +  +D+ W D +        P Y
Sbjct:   202 GGKRIPLKGVVNKALTECPTIKKVLVFQRSAEPTASMVEGRDVWWHDIIPKF-----PRY 256

Query:   120 YSP-VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTN 177
               P V NP   +  +L++SG+TG+PK +       +   A    ++ DL   D      +
Sbjct:   257 CPPAVVNPEHPLF-LLYTSGSTGKPKGVVHCTGGYLLGAAATCKYVFDLHPTDRMGCAGD 315

Query:   178 LGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 233
             +GW+ G   I++   + GA   +++ +P    + ++   V+   +T     P+ ++  + 
Sbjct:   316 VGWITGHTYIVYGPLMLGAATLVFESTPAYPDYSRYWSVVERHRLTQWYIAPTAIRLLQR 375

Query:   234 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSL 290
               N     D + +R   S GE    +  +W          A+ ++   TE  S +I  SL
Sbjct:   376 AGNEFVKHDRSSLRVLGSVGEPIAPESFMWYYEVVGEKRCAVADTYWQTETGS-HIVTSL 434

Query:   291 --LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 348
               + P   G+ +        VI+D       +     G + +   +  A+ R +   H+ 
Sbjct:   435 GPVTPMKPGSATLPFFGIDAVIIDPLTGKIIEGNDVEGVLAIRSPWPSAA-RTVWRGHDR 493

Query:   349 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 408
                  +  Y G      GD   R   GYI ++GR DD +N+ G + S+ EIE      D 
Sbjct:   494 YIDTYLKPYPGFYFT--GDGATRDKDGYIWIRGRVDDVVNISGHRLSTAEIEAALLSHD- 550

Query:   409 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV 468
             ++ E+A + V     G  V   F++LK G+ +  +  K +   A++S + P F      +
Sbjct:   551 AVAESAVVGVHDELTGQAVNA-FILLKPGYEATVELEKELIM-AVRSTIGP-FASPRKLI 607

Query:   469 VPEFPRTASNKLLRRVLRDQIKHEL 493
               + P+T S K++RR+LR  +  E+
Sbjct:   608 FSDLPKTRSGKIMRRILRKILAGEV 632

GO:0003987 "acetate-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=ISO

GO:0016208 "AMP binding" evidence=ISM

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0019654 "acetate fermentation" evidence=ISO

CGD|CAL0001207 ACS2 [Candida albicans (taxid:5476)]

 Score = 329 (120.9 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 130/513 (25%), Positives = 223/513 (43%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD +A+ +PM  +A+I  LAI   G     I   F+A  I  R+  +  K + T D   
Sbjct:   147 KGDTVAVYLPMNAQAIIAMLAIARLGAAHSVIFAGFSAGSIKDRVNDASCKALITCDEGK 206

Query:    64 RGGRKF---PLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 119
             RGGR      L  + L   P ++ +++    N+  I L E     +D+   V+    P Y
Sbjct:   207 RGGRTTNIKKLCDEALVDCPTVEKVLVYKRTNNPEIHLTEG----RDYYWDVETAKFPGY 262

Query:   120 YSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTN 177
               PV  N  D +  +L++SG+TG PK +  +    +   A    +I D+   D+     +
Sbjct:   263 LPPVSVNSEDPLF-LLYTSGSTGTPKGVVHSTAGYLLGAALSTKYIFDIHPEDILFTAGD 321

Query:   178 LGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 233
             +GW+ G    L+   L G    +++G+P    +G+F   V+    T     P+ ++  R 
Sbjct:   322 VGWITGHTYALYGPLLLGVPTIIFEGTPAYPDYGRFWQIVEKHKATHFYVAPTALRLLRK 381

Query:   234 TNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---G 288
                 E    D + +R+  S GE   +  D+W     WYN  +       +S  Y Q   G
Sbjct:   382 AGEQEIAKYDLSSLRTLGSVGEP--ISPDIW----EWYNEFVGK-NQCHISDTYWQTESG 434

Query:   289 S-LLQPQAF------GAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDR 340
             S L+ P A       G+ S         ++D   GV   +     G + +   +   + R
Sbjct:   435 SHLIAPLAGVVPNKPGSASYPFFGIDAALIDPVTGVEI-EGNDAEGVLAIKDHWPSMA-R 492

Query:   341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
              +  +H +     M  Y G      GD   R   GY  ++GR DD +N+ G + S+ EIE
Sbjct:   493 TVYKNHTKYMDTYMNPYPGYYFT--GDGAARDHDGYYWIRGRVDDVVNVSGHRLSTAEIE 550

Query:   401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK-LKMIFSKAIQSKLNP 459
                 + D+ + E A + +     G + ++ +V LK+G + +  + L+      ++  + P
Sbjct:   551 AALIE-DKKVSEAAVVGIHDDITG-QAVIAYVALKEGNSDEDSEGLRKELVLQVRKTIGP 608

Query:   460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
                   V +V + P+T S K++RR+LR    +E
Sbjct:   609 FAAPKSVIIVQDLPKTRSGKIMRRILRKVSSNE 641

GO:0006083 "acetate metabolic process" evidence=ISS

GO:0003987 "acetate-CoA ligase activity" evidence=IGI;ISS;ISA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IGI;ISA

GO:0005829 "cytosol" evidence=IGI;ISA

GO:0005730 "nucleolus" evidence=IEA

GO:0016880 "acid-ammonia (or amide) ligase activity" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

UNIPROTKB|Q8NJN3 ACS2 "Acetyl-coenzyme A synthetase 2" [Candida albicans SC5314 (taxid:237561)]

 Score = 329 (120.9 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 130/513 (25%), Positives = 223/513 (43%)

Query:     4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             KGD +A+ +PM  +A+I  LAI   G     I   F+A  I  R+  +  K + T D   
Sbjct:   147 KGDTVAVYLPMNAQAIIAMLAIARLGAAHSVIFAGFSAGSIKDRVNDASCKALITCDEGK 206

Query:    64 RGGRKF---PLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 119
             RGGR      L  + L   P ++ +++    N+  I L E     +D+   V+    P Y
Sbjct:   207 RGGRTTNIKKLCDEALVDCPTVEKVLVYKRTNNPEIHLTEG----RDYYWDVETAKFPGY 262

Query:   120 YSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTN 177
               PV  N  D +  +L++SG+TG PK +  +    +   A    +I D+   D+     +
Sbjct:   263 LPPVSVNSEDPLF-LLYTSGSTGTPKGVVHSTAGYLLGAALSTKYIFDIHPEDILFTAGD 321

Query:   178 LGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 233
             +GW+ G    L+   L G    +++G+P    +G+F   V+    T     P+ ++  R 
Sbjct:   322 VGWITGHTYALYGPLLLGVPTIIFEGTPAYPDYGRFWQIVEKHKATHFYVAPTALRLLRK 381

Query:   234 TNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---G 288
                 E    D + +R+  S GE   +  D+W     WYN  +       +S  Y Q   G
Sbjct:   382 AGEQEIAKYDLSSLRTLGSVGEP--ISPDIW----EWYNEFVGK-NQCHISDTYWQTESG 434

Query:   289 S-LLQPQAF------GAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDR 340
             S L+ P A       G+ S         ++D   GV   +     G + +   +   + R
Sbjct:   435 SHLIAPLAGVVPNKPGSASYPFFGIDAALIDPVTGVEI-EGNDAEGVLAIKDHWPSMA-R 492

Query:   341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
              +  +H +     M  Y G      GD   R   GY  ++GR DD +N+ G + S+ EIE
Sbjct:   493 TVYKNHTKYMDTYMNPYPGYYFT--GDGAARDHDGYYWIRGRVDDVVNVSGHRLSTAEIE 550

Query:   401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK-LKMIFSKAIQSKLNP 459
                 + D+ + E A + +     G + ++ +V LK+G + +  + L+      ++  + P
Sbjct:   551 AALIE-DKKVSEAAVVGIHDDITG-QAVIAYVALKEGNSDEDSEGLRKELVLQVRKTIGP 608

Query:   460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
                   V +V + P+T S K++RR+LR    +E
Sbjct:   609 FAAPKSVIIVQDLPKTRSGKIMRRILRKVSSNE 641

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;ISA

GO:0005829 "cytosol" evidence=ISA

GO:0006083 "acetate metabolic process" evidence=ISS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.0
PLN03051	499	PLN03051, PLN03051, acyl-activating enzyme; Provis	0.0
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-69
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-66
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-48
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-47
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	6e-44
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-41
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-39
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-38
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-38
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	7e-36
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-32
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-26
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	9e-26
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	3e-24
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-20
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-20
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-19
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-19
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-18
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-17
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-17
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	3e-17
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-17
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	8e-17
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-16
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	6e-16
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	6e-16
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-16
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-15
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-14
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	4e-14
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-13
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-13
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-13
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-13
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-11
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-11
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	9e-11
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-10
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	1e-10
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-09
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-09
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-09
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-09
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	4e-08
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-07
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-07
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-06
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-06
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-06
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-06
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-06
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-06
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-06
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-06
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-06
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	5e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	9e-06
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-05
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-05
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	6e-05
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-05
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-04
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	1e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-04
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-04
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-04
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-04
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-04
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-04
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-04
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-04
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-04
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-04
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	9e-04
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	0.002
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	0.002
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.002
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.002
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	0.003
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	0.004

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score =  940 bits (2431), Expect = 0.0
 Identities = 335/500 (67%), Positives = 386/500 (77%), Gaps = 3/500 (0%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
           F KGDAIAIDMPM V AVIIYLAIILAG VVVSIADSFA  EIATRL++SKAK IFTQD 
Sbjct: 230 FEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDV 289

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           I+RGG+  PLYS+V+ A   KAIVLPA G  V + LRE D+SW DFL+  +   RP+ Y 
Sbjct: 290 IVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYK 349

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
            V  PV+A  NILFSSGTTGEPKAIPWTQL+ +R  A+ WAH+D++ GD+ CWPTNLGW+
Sbjct: 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWM 409

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           MGP ++++S LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLD
Sbjct: 410 MGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD 469

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
           W+ IR F STGE S+VDD LWL S+A Y  IIE CGGTEL   ++ GSLLQPQAF AFST
Sbjct: 470 WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFST 529

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
             M   L ILD+ G PYPDD PC GE+ LFPL  GAS  LLNADH +VYF+GMP++ G  
Sbjct: 530 PAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKI 589

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           LRRHGDI +RT GGY    GRADDTMNLGGIK SSVEIERVC+ ADES+LETAAI V P 
Sbjct: 590 LRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPP 649

Query: 422 GGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
           GGGPE LVI  VLK   G     ++LK IF+ AIQ KLNPLFKVS V +VP FPRTASNK
Sbjct: 650 GGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNK 709

Query: 480 LLRRVLRDQIKHELSVRSRI 499
           ++RRVLR Q+  ELS RS++
Sbjct: 710 VMRRVLRQQLAQELS-RSKL 728

Length = 728

>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional

 Score =  831 bits (2148), Expect = 0.0
 Identities = 347/499 (69%), Positives = 404/499 (80%), Gaps = 11/499 (2%)

Query: 12  MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 71
           MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR  PL
Sbjct: 1   MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60

Query: 72  YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 129
           YSKV+ AAP KAIVLPA G  V +PLREQDLSW DFL  ++       N YSPVY PV++
Sbjct: 61  YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120

Query: 130 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 189
           V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180

Query: 190 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 247
           +FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T    +EGLDW+K+R 
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240

Query: 248 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 306
           FASTGE S VDD LWLSS + +Y  +IE CGGTEL+S YI  +LLQPQA GAFSTA++  
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300

Query: 307 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 364
             V+L++ GVPYPDDQPCVGEV L P  LGASDRLLNADH++VY++GMPMY  KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360

Query: 365 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 424
           HGDI+KRT GGY  VQGRADDTMNLGGIKTSSVEIER CD+A   I ETAA+ V+P  GG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420

Query: 425 PEVLVIFV---VLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 480
           PE+LVIF+     KKGF    P+ L+  F +AIQ+ LNPLFKVS VK+VPE PR ASNKL
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480

Query: 481 LRRVLRDQIKHELSVRSRI 499
           LRRVLRDQ+K ELS RS++
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499

Length = 499

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  228 bits (583), Expect = 5e-69
 Identities = 142/500 (28%), Positives = 214/500 (42%), Gaps = 88/500 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD + I MPM   AV+  LAI   G + V I   F    +ATRL+ ++AK + T D  L
Sbjct: 31  KGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGPDAVATRLQDAEAKVLITADGFL 90

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
           R G++                          + L++                        
Sbjct: 91  RRGKR--------------------------VDLKDDPAM-------------------- 104

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVM 182
                    I+++SGTTG+PK    T     ++   +     DLK GD   W T++GW+M
Sbjct: 105 ---------IIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMM 155

Query: 183 GPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWR--NTNCL 237
           GP ++    L GAT+ LY+G+   P      + V+   VT LG  P+L++A R      +
Sbjct: 156 GPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPV 215

Query: 238 EGLDWTKIRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLLQPQA 295
           EG D + +R   STGE  + +  LWL  +       II   GGTE+S   +    ++P  
Sbjct: 216 EGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGILGNVPIRPIK 275

Query: 296 FGAFSTATMTAGLVILDECGVPYPDDQPCVGE-------VGLFPLYLGASDRLLNADHEE 348
             +F+  +      ++DE G P       VGE        G+   +    +R     + E
Sbjct: 276 PCSFNGPSPGMDADVVDEDGRPVR---GEVGELVVRAPWPGMTRGFWRDPER-----YLE 327

Query: 349 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 408
            Y+   P   G+    HGD       GY  + GR+DDT+ + G +    EIE V +    
Sbjct: 328 TYWSRFP---GVW--VHGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPA 382

Query: 409 SILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 467
            + E AAI V  P  G  E +V FVVLK G T     L+   +  +   L   F+   V 
Sbjct: 383 -VAEAAAIGVPDPVKG--EAIVCFVVLKPGVT-PSAALEAELADHVGDALGKPFRPREVH 438

Query: 468 VVPEFPRTASNKLLRRVLRD 487
            V + P+T + K++RRV+R 
Sbjct: 439 FVSDLPKTRNGKIMRRVIRA 458

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  222 bits (568), Expect = 2e-66
 Identities = 128/506 (25%), Positives = 204/506 (40%), Gaps = 67/506 (13%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
              KGD +AI MP +  AVI  LA    G +   ++   +A  +A R+     K +   D
Sbjct: 61  GGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD 120

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
              R G++  L            +V                L + + +           +
Sbjct: 121 GTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASEK-----F 163

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTN 177
                P D  + +L++SGTTG+PK I  +    L   R TA+   H DL  GD +   ++
Sbjct: 164 EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGDRFWNSSD 221

Query: 178 LGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNT 234
            GW+ G    +FS   +GAT  LY G P        + ++   VT+ GT P+ ++     
Sbjct: 222 PGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL 281

Query: 235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQG-- 288
              E  D + +R   S GE  N +   W     +Y+A    I++  G TE    +I G  
Sbjct: 282 GLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGMGFIAGRP 336

Query: 289 SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-------GLFPLYLGASDRL 341
            +    +        +      +D+ G P P   P VGE+       G+   Y    +R 
Sbjct: 337 PVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGELVVRLPWPGMALTYWNDPERY 389

Query: 342 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
             A     Y               GD  +R   GY  + GR+DD + + G +   +EIE 
Sbjct: 390 KEAYFGRWYR-------------TGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIES 436

Query: 402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 461
           V   A  ++ E A + V P  G  ++++ FVVL  G    P++L     + +   + P  
Sbjct: 437 VL-LAHPAVAEAAVVGV-PDPGKGQIVLAFVVLAAGVE--PNELAEEIRRHVARNIGPHA 492

Query: 462 KVSLVKVVPEFPRTASNKLLRRVLRD 487
               ++ V E P+TAS K+ RR+LR 
Sbjct: 493 IPRKIRFVDELPKTASGKIQRRLLRK 518

Length = 528

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score =  175 bits (447), Expect = 2e-48
 Identities = 138/509 (27%), Positives = 215/509 (42%), Gaps = 65/509 (12%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A  +P    AVI  LA    G +  S +  F    +  R    + K +F  D  +
Sbjct: 110 PGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYV 169

Query: 64  RGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 119
             G++     K+         L+A+V+    +    P   +  +     S       P  
Sbjct: 170 YNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLE 229

Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWP 175
           +  +  P D  + IL+SSGTTG PK I        L  ++   E   H DL+ GD   + 
Sbjct: 230 FERL--PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYY 284

Query: 176 TNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWR 232
           T  GW+M    L S  L+GATL LY GSPL        +     G+T+ GT    + A  
Sbjct: 285 TTTGWMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALE 343

Query: 233 NTNC--LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTE 280
                     D + +R+  STG     E      S+V  D+WL+S +         GGT+
Sbjct: 344 KAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTD 394

Query: 281 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF--------- 331
           +   ++ G+   P   G      +   +   DE      + +P +GEVG           
Sbjct: 395 ICGCFVGGNPTLPVYRGEIQCRGLGMAVEAFDE------EGKPVIGEVGELVCTKPFPSM 448

Query: 332 PLY-LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390
           PLY     D    + + + YF     + G+   RHGD IK T  G +I+ GR+D T+N G
Sbjct: 449 PLYFWNDPD---GSRYRDAYFD---TFPGVW--RHGDWIKITPHGGVIIYGRSDATLNPG 500

Query: 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 450
           G++  + EI RV ++  E + ++  +      G  E + +FV L++G T     +K I  
Sbjct: 501 GVRIGTAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVKRI-R 557

Query: 451 KAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
            AI++ L+P    + +  VP+ P T S K
Sbjct: 558 SAIRAALSPRHVPAEIIAVPDIPYTLSGK 586

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  171 bits (436), Expect = 2e-47
 Identities = 122/513 (23%), Positives = 187/513 (36%), Gaps = 68/513 (13%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +AI +P +   +I +LA + AG V V +      RE+A  L  + AK + T     
Sbjct: 62  PGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSA--- 118

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                  L   V  A P+  +VL     D  +P+  + L            P P+  +  
Sbjct: 119 ---EFAALLEAVAEALPVVLVVLLVGDADDRLPITLEAL--------AAEGPGPDADARP 167

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA--EGWAHIDLKVGDVYCWPTNLGWV 181
            +P D    +L++SGTTG PK +  T  + +   A         L   DV      L  +
Sbjct: 168 VDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHI 226

Query: 182 MGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRNT-NCLE 238
            G  V L +  L G TL L    P +       ++   VTVL  VP+ ++   +     +
Sbjct: 227 FGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD 286

Query: 239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 298
               + +R   S G     +       +    AI+E  G TE S                
Sbjct: 287 DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETS--------------PV 332

Query: 299 FSTATMTAGLVILDECGVPYP----------DDQPCVGEVG--------LFPLYLGASDR 340
            +       L      G P P            +   GEVG        +   Y    + 
Sbjct: 333 VTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEA 392

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
              A  E+ + R             GD+      GY+ + GR  D +  GG      EIE
Sbjct: 393 TAEAFDEDGWLRT------------GDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIE 440

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
            V  +    + E A + V     G E +V  VVLK G  ++    ++     ++ +L   
Sbjct: 441 AVLAEHPA-VAEAAVVGVPDERWG-ERVVAVVVLKPGGDAELTAEELR--AFLRKRLALY 496

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 493
               +V  V E PRTAS K+ RR LR++ + E 
Sbjct: 497 KVPRIVVFVDELPRTASGKIDRRALREEYRAEP 529

Length = 534

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score =  163 bits (416), Expect = 6e-44
 Identities = 151/533 (28%), Positives = 219/533 (41%), Gaps = 98/533 (18%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A  +P     V+  LA    G +  S +  F  + +  R    + K +   D   
Sbjct: 138 PGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYR 197

Query: 64  RGGRKFPLYSKV---LGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 118
            GG+ F   +KV     A P     +V+P +G           L W+DFL+         
Sbjct: 198 YGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLA--PAEAAEL 255

Query: 119 YYSPVYNPVDAVVNILFSSGTTGEPKAIP-------WTQLSSIRCTAEGWAHIDLKVGDV 171
            + PV  P D  + IL+SSGTTG PK I           L  +        H DL  GD 
Sbjct: 256 EFEPV--PFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGL------HCDLGPGDR 307

Query: 172 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLGTVPSL 227
           + W T  GW+M    L S  L GATL LY GSP        +     + GVTV GT    
Sbjct: 308 FFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKY 365

Query: 228 VKAWRNTNCL-------EGLDWTKIRSFASTGE----------TSNVDDDLWLSSKAWYN 270
           + A     C        E  D + +R+  STG             +V  D+WL+S     
Sbjct: 366 LDA-----CEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLAS----- 415

Query: 271 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG- 329
             I   GGT++ S ++ G+ L P   G      +   +   DE G      +P VGEVG 
Sbjct: 416 --I--SGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDG------RPVVGEVGE 465

Query: 330 L--------FPLYL-----GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 376
           L         PL       G+  R  +A     YF     + G  + RHGD I+ T  G 
Sbjct: 466 LVCTKPFPSMPLGFWNDPDGS--RYRDA-----YFD---TFPG--VWRHGDWIEITEHGG 513

Query: 377 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 436
           +++ GR+D T+N GG++  + EI R  +   E +L++  I      G   +  +FVVL +
Sbjct: 514 VVIYGRSDATLNRGGVRIGTAEIYRQVEALPE-VLDSLVIGQEWPDGDVRM-PLFVVLAE 571

Query: 437 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL----RRVL 485
           G T        I    I++ L+P      +  VP+ PRT S K +    +++L
Sbjct: 572 GVTLDDALRARI-RTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLL 623

Length = 655

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  153 bits (389), Expect = 1e-41
 Identities = 95/406 (23%), Positives = 150/406 (36%), Gaps = 35/406 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +AI +P +   V+  LA++ AG   V +  S  A  +A  L  S+AK + T D   
Sbjct: 23  PGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDD--- 79

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                  L  K+L       ++L  I         +         +S +    P      
Sbjct: 80  ------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAEPPAPPV----- 128

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
               D +  I+++SGTTG+PK +  T  + +   A       L  GD       L +   
Sbjct: 129 --DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDGS 186

Query: 184 PVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 242
              +F   L G TL L     L+       ++   VTVL  VP+L++        +  D 
Sbjct: 187 VWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKKYDL 246

Query: 243 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP-QAFGAFST 301
           + +R   S GE    +    L  +     ++   G TE +          P    G+   
Sbjct: 247 SSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGR 306

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPM 356
                 + +LDE G P P     VGE+     G+   YL   +        E +      
Sbjct: 307 PLPGVEVKVLDEEGEPVPPG--EVGELCIRGPGVARGYLNDPEL-----TAERFVED--- 356

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 402
             G  + R GD+ +    GY+ + GR DD + + G +    EIE V
Sbjct: 357 --GWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAV 400

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  145 bits (368), Expect = 2e-39
 Identities = 97/363 (26%), Positives = 147/363 (40%), Gaps = 47/363 (12%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 191
           IL++SGTTG+PK +  +  + +         I L  GDV      L  V+G    L  + 
Sbjct: 5   ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64

Query: 192 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 251
           L G T+ LY+G P   SF + ++   VTVL  VP+L  A        G D + +R   S 
Sbjct: 65  LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124

Query: 252 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 306
           GE       L       +       I+E  G TE S         + +  G       T 
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171

Query: 307 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 356
           G  +   E  V   + +P   GEVG        +   Y         A  E+ ++R    
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYR---- 227

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 416
                    GD+      GY+ + GR+ D + +GG      E+E V  Q   ++ E A +
Sbjct: 228 --------TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQH-PAVAEAAVV 278

Query: 417 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 476
            V P     E +V FVVL+ G  +  ++LK      ++ +L P     +++ V E P+TA
Sbjct: 279 GV-PDEDRGERIVAFVVLRPGADALAEELK----AHLRERLAPYKVPRVIEFVDELPKTA 333

Query: 477 SNK 479
           S K
Sbjct: 334 SGK 336

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  147 bits (373), Expect = 3e-38
 Identities = 148/544 (27%), Positives = 238/544 (43%), Gaps = 101/544 (18%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +AI MPM   A I  LA    G +   +   F+A  +A R+  + AK + T D  L
Sbjct: 112 KGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGL 171

Query: 64  RGGRKFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 117
           RGG+  PL + V   L   P+     +V+   GN V   +  +D+ W D ++        
Sbjct: 172 RGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----S 225

Query: 118 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 166
            Y  P   P+D+   + IL++SG+TG+PK +       +  T  G   +A +      D+
Sbjct: 226 AYCEP--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDI 275

Query: 167 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 221
           K GD++ W T ++GW+ G   I++    NGAT  +++G+P     G+F   ++   VT+ 
Sbjct: 276 KDGDIF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIF 334

Query: 222 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAIIES 275
            T P+ ++A        G +W K      +R   S GE  N   + W+    WY  ++  
Sbjct: 335 YTAPTAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN--PEAWM----WYYKVV-- 382

Query: 276 CGGTE--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQP 323
            G     +   + Q   G ++     GA  T   +A L        ++DE G    +   
Sbjct: 383 -GKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG----NPVE 437

Query: 324 CVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVG 374
             GE G    YL          R +  DHE   + YF     + G      GD  +R   
Sbjct: 438 GPGEGG----YLVIKQPWPGMLRTIYGDHERFVDTYF---SPFPGYYFT--GDGARRDKD 488

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 434
           GYI + GR DD +N+ G +  + EIE     +  ++ E A + +     G + +  FV L
Sbjct: 489 GYIWITGRVDDVINVSGHRLGTAEIESAL-VSHPAVAEAAVVGIPDDIKG-QAIYAFVTL 546

Query: 435 KKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 491
           K G+    +   +L+    K I     P+ K   ++ VP  P+T S K++RR+LR     
Sbjct: 547 KDGYEPDDELRKELRKHVRKEI----GPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG 602

Query: 492 ELSV 495
           E  +
Sbjct: 603 EEEI 606

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score =  146 bits (371), Expect = 6e-38
 Identities = 137/508 (26%), Positives = 207/508 (40%), Gaps = 43/508 (8%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD ++  +P   +AV+  LA    G +  S +  F AR +  R +  + K +FT D   
Sbjct: 138 PGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYR 197

Query: 64  RGGRKFPLYSKVL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRP 117
             G++     KV         L+A+V  P +G      P  +  L  +DF ++       
Sbjct: 198 YNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE-- 255

Query: 118 NYYSPVYN--PVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCW 174
                V+   P D  + ILFSSGTTG PK I  +   + ++   E   H DL  GD   +
Sbjct: 256 ----LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFY 311

Query: 175 PTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAW 231
            T  GW+M    L S    GATL LY GSP            +  G T+ GT    V A 
Sbjct: 312 YTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMAC 370

Query: 232 RNTNC--LEGLDWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAY 285
           R          D + ++  ASTG     D   W+     +  W  +I    GGT++ S +
Sbjct: 371 RKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCF 427

Query: 286 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN-- 343
              +   P   G      +   +   D  G P   +   VGE+           R  N  
Sbjct: 428 AGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVTGE---VGELVCTNPMPSMPIRFWNDP 484

Query: 344 --ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
             + + + YF   P      + RHGD I  T  G I++ GR+D T+N  G++  S EI  
Sbjct: 485 DGSKYRDAYFDTYPG-----VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYN 539

Query: 402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 461
             ++ DE + E+  I      GG   +V+FV L  G T     L  I  + I++ L+P  
Sbjct: 540 AVERLDE-VRESLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRI-KRTIRAGLSPRH 596

Query: 462 KVSLVKVVPEFPRTASNKLLRRVLRDQI 489
               +  VP  P T + K +   ++  +
Sbjct: 597 VPDEIIEVPGIPHTLTGKRVEVAVKRVL 624

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  140 bits (355), Expect = 7e-36
 Identities = 151/550 (27%), Positives = 230/550 (41%), Gaps = 121/550 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAK 54
           KGD +AI MPM     I  LA         ++ AG         F+A  +A R+  +K+K
Sbjct: 102 KGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSK 152

Query: 55  GIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFL 108
            + T D   RGG+  PL   V   L   P   K IV+   G +V  P+ E +D+ W D +
Sbjct: 153 LLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLM 210

Query: 109 SSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH 163
           +         Y  P   P+DA   + IL++SG+TG+PK +  T    L         +A 
Sbjct: 211 AKA-----SPYCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAA 255

Query: 164 ------IDLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF--- 212
                  D+   DVY W T ++GW+ G   I++    NGAT  +Y+G+P     G++   
Sbjct: 256 TTFKYVFDIHPDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEI 314

Query: 213 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSK 266
           V+   VT+  T P+ ++         G +W K      +R   S GE  N +   W+   
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMR----FGDEWPKKHDLSSLRLLGSVGEPINPE--AWM--- 365

Query: 267 AWYNAII--ESCGGTELSSAYIQ----GSLLQPQAFGAFSTATMTAGL-------VILDE 313
            WY  +I  E C    +   + Q    G ++ P   GA      +A          I+DE
Sbjct: 366 -WYYEVIGKERC---PIVDTWWQTETGGHMITPLP-GATPLKPGSATRPFPGVEPAIVDE 420

Query: 314 CGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRR 364
            G          G  G    YL          R +  DHE   + YF     + G     
Sbjct: 421 EGNEVEG-----GVEG----YLVIKRPWPGMLRTIYGDHERYVKTYFS---KFPGYYFT- 467

Query: 365 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER--VCDQADESILETAAISVSPAG 422
            GD  +R   GY  + GR DD +N+ G +  + E+E   V   +  ++ E A +      
Sbjct: 468 -GDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALV---SHPAVAEAAVVGKPDEV 523

Query: 423 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 482
            G E +  FV LK G     D+L+    K ++ ++ P+     +  VP  P+T S K++R
Sbjct: 524 KG-EAIYAFVTLKDGVEP-SDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMR 581

Query: 483 RVLRDQIKHE 492
           R+LR     E
Sbjct: 582 RILRKIAAGE 591

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  130 bits (328), Expect = 3e-32
 Identities = 143/523 (27%), Positives = 229/523 (43%), Gaps = 63/523 (12%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD + I MPM   AVI  LA    G +   +   FA++E+A+R+  +K K I T  F +
Sbjct: 97  KGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGI 156

Query: 64  RGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHP 115
             GR  P Y  +L  A       P K ++L      V  PL+  +DL W + ++      
Sbjct: 157 EPGRVVP-YKPLLDKALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD 213

Query: 116 RPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-D 165
                  V  PV++   + IL++SGTTG+PK +       +R       A  W+  +I  
Sbjct: 214 ------CV--PVESTDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYG 258

Query: 166 LKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTV 220
           +K GDV+   +++GWV+G   I++   L+GAT  LY+G P+      ++ + +++ GV  
Sbjct: 259 IKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNA 318

Query: 221 LGTVPSLVKAWR----NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 276
           L T P+ ++A R    +   ++  D + +R+    GE  +     W+  K     +I+  
Sbjct: 319 LFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE-KTLGVPVIDHW 377

Query: 277 GGTELSSAYI---QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FP 332
             TE          G  L P   G+         + +LDE G         +G + +  P
Sbjct: 378 WQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLDETGEELGPG--ELGNIVIKLP 435

Query: 333 LYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 389
           L  G    L   D E   ++Y    P Y        GD   +   GY+ V GR DD +N+
Sbjct: 436 LPPGCLLTLWG-DDERFKKLYLNKFPGY-----YDTGDSGYKDEDGYLFVMGRTDDVINV 489

Query: 390 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 449
            G + S+ E+E         + E A + V     G +V +  VVLK       D+L+   
Sbjct: 490 AGHRLSTGEMEESV-LKHPDVAECAVVGVRDELKG-QVPLGLVVLKDDCKIDADQLENEI 547

Query: 450 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
              ++ ++ P+     V  V   P+T S K+LRR LR     E
Sbjct: 548 VALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRKIADGE 590

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score =  113 bits (285), Expect = 1e-26
 Identities = 155/565 (27%), Positives = 232/565 (41%), Gaps = 145/565 (25%)

Query: 4   KGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAK 54
           KGD +AI MPM   A +  LA         ++  G         F+A  +A R+  + AK
Sbjct: 122 KGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALADRIIDAGAK 172

Query: 55  GIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFL 108
            + T D  +RGG+  PL + V   L   P   K IV+   G DV     E +DL W + +
Sbjct: 173 LVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGRDLWWHELV 230

Query: 109 SSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WA 162
           +   D         P   P+DA   + IL++SG+TG+PK +  T       T  G   +A
Sbjct: 231 AGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------TG-GYLVYA 274

Query: 163 HI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---SPLERSFGK 211
            +      D K GDVY W T ++GWV G   I++    NGAT  +++G    P    F +
Sbjct: 275 AMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWE 333

Query: 212 FVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFAS------TGETSNVDDDL 261
            +    VT+  T P    +L+K        EG +  K    +S       GE  N   + 
Sbjct: 334 VIDKHKVTIFYTAPTAIRALMK--------EGDEHPKKYDLSSLRLLGSVGEPIN--PEA 383

Query: 262 WLSSKAWYNAII--ESC-----------GGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 308
           W     WY  ++  E C           GG  ++          P   GA      +A  
Sbjct: 384 WE----WYYKVVGGERCPIVDTWWQTETGGIMITPL--------P---GATPLKPGSATR 428

Query: 309 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 352
                   ++DE G P        GE G     L   D      R +  DHE   + YF 
Sbjct: 429 PLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKDPWPGMMRTIYGDHERFVKTYF- 478

Query: 353 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER--VCDQADESI 410
               +KGM     GD  +R   GY  + GR DD +N+ G +  + EIE   V   A   +
Sbjct: 479 --STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV---AHPKV 531

Query: 411 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470
            E A +       G + +  FV LK G     D+L+      ++ ++ P+ K  +++  P
Sbjct: 532 AEAAVVGRPDDIKG-QGIYAFVTLKGGEEPS-DELRKELRNWVRKEIGPIAKPDVIQFAP 589

Query: 471 EFPRTASNKLLRRVLRDQIKHELSV 495
             P+T S K++RR+LR   + E  +
Sbjct: 590 GLPKTRSGKIMRRILRKIAEGEEIL 614

Length = 637

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score =  110 bits (277), Expect = 9e-26
 Identities = 130/514 (25%), Positives = 216/514 (42%), Gaps = 52/514 (10%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   AV   LA    G +   +   FA+  +A R+  +  K I + D  +
Sbjct: 107 RGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGM 166

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYY 120
           RGG+  P Y  +L AA  +A   P   +  D G+ P+R   +  +D    VDY      +
Sbjct: 167 RGGKVIP-YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQH 219

Query: 121 SPVYNPVDAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCW 174
                PV+ + +     IL++SGTTG+PK +       ++      WA   ++ G V   
Sbjct: 220 EDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFS 279

Query: 175 PTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKA 230
            +++GWV+G   I+++  L GA   LY+G P     G     V+  GV  + + P+ ++ 
Sbjct: 280 ASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRV 339

Query: 231 WR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAY 285
            +  +   L   D + +      GE  +     W++       +I++   TE      A 
Sbjct: 340 LKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITD-GLGKPVIDNYWQTETGWPVLAI 398

Query: 286 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDR 340
           + G  L+P   G+         L +LDE        +PC   E G+     PL  G    
Sbjct: 399 MPGLDLKPVKLGSPGLPMYGYHLRVLDEA-----TGRPCGPNEKGVLTVVPPLPPGCLST 453

Query: 341 LLNADHEEV--YFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
           +   D   +  Y+     P+Y         D   R   GY  + GR DD +N+ G +  +
Sbjct: 454 VWGDDARFLKTYWSHFKRPLYSSF------DWGIRDEDGYTFILGRTDDVINVAGHRLGT 507

Query: 397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-- 454
            EIE     +  S+ E A + V     G +V V+F +LK+  ++            +   
Sbjct: 508 REIEESV-SSHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAGDAHDPHAVETGMMDC 565

Query: 455 --SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
              +L  + + + V  V   P+T S KLLRR ++
Sbjct: 566 VVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQ 599

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score =  105 bits (264), Expect = 3e-24
 Identities = 140/533 (26%), Positives = 217/533 (40%), Gaps = 91/533 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGDA+ I +PM +   I  LA    G V   +   F+A  +A R+   K K + T + + 
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 101
           RG        K +    LK IV  A+      G  VGI L         RE       +D
Sbjct: 204 RG-------PKTI---NLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253

Query: 102 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 156
           + W+D +        PNY  P    V+ V     + +L++SG+TG+PK +  T    +  
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303

Query: 157 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 211
           TA  + +  D K  DVY    + GW+ G   + +   LNGAT+ +++G+P     G+   
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363

Query: 212 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSN----------VDD 259
            V    VT+  T P+LV++        +       +R   S GE  N          V D
Sbjct: 364 IVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD 423

Query: 260 DLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 316
                S  W+       GG   T L  A+       PQ  G+ +        VI+DE G 
Sbjct: 424 SRCPISDTWWQT---ETGGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGK 473

Query: 317 PYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVYFRGMPMYKGMCLRRHGDIIKRTV 373
               +  C G + +   + GA  R L  DH   E  YF+    Y        GD   R  
Sbjct: 474 EI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTYFKPFAGY-----YFSGDGCSRDK 525

Query: 374 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 433
            GY  + GR DD +N+ G +  + E+E     +     E A + +     G  +   FV 
Sbjct: 526 DGYYWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCAEAAVVGIEHEVKGQGIYA-FVT 583

Query: 434 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
           L +G     ++L+      +++++        +   P  P+T S K++RR+LR
Sbjct: 584 LVEG-VPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 635

Length = 666

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 94.1 bits (235), Expect = 1e-20
 Identities = 119/520 (22%), Positives = 183/520 (35%), Gaps = 136/520 (26%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +A+ +P   +  I Y  I+ AG VVV +   +  RE+  +L  S AK +       
Sbjct: 48  KGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV----- 102

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                                                 +S++D L+S    P      PV
Sbjct: 103 -------------------------------------AISFEDALASGAPLP-----LPV 120

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGD----------V 171
               D +  + ++ GTTG PK    T   L +       W     +  D          +
Sbjct: 121 ELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHI 180

Query: 172 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 231
           +    N+               GAT  L   +    +  K ++    T+   VP+L  A 
Sbjct: 181 FGLTVNM---------LLGLRLGATNVLVP-NFRPINVLKEIKRYRFTIFPGVPTLYNAL 230

Query: 232 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW---YNA-IIESCGGTELSSAYIQ 287
            N    +  D++ +R   S G    V+      ++ +     A ++E  G TE S     
Sbjct: 231 LNHPEFKKYDFSSLRLCISGGAPLPVE-----VAERFEEKTGAPLVEGYGLTETSPVTTV 285

Query: 288 GSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
             L   +  G       + GL        I+D+ G   P      GEVG           
Sbjct: 286 NPLDGERKPG-------SIGLPLPGTEVKIVDDEGNELPP-----GEVG----------- 322

Query: 341 LLNADHEEVYFRG---MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTM 387
                  E+  RG   M  Y          L     R GDI      GY  +  R  D +
Sbjct: 323 -------ELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMI 375

Query: 388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 447
            +GG      EIE V   +  ++LE A + V P     E +  FVVLK+G +   ++L +
Sbjct: 376 IVGGFNVYPREIEEVL-YSHPAVLEAAVVGV-PDPYRGEAVKAFVVLKEGASLTEEEL-I 432

Query: 448 IFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 486
            F +    +L   +KV   V+   E P++A  K+LRR LR
Sbjct: 433 AFCR---ERLAA-YKVPRQVEFRDELPKSAVGKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 93.8 bits (234), Expect = 2e-20
 Identities = 129/522 (24%), Positives = 202/522 (38%), Gaps = 99/522 (18%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +AI  P +   VI  L  + AG VVV +   + A E A  L    AK +F     L
Sbjct: 54  KGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL 113

Query: 64  RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                  +        P L+ +V+     D   P  E+  ++ DFL++ D    P   +P
Sbjct: 114 ------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----PAERAP 161

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD----------V 171
             +P D V +ILF+SGTTG PK    T    +   A  WA    L  GD          V
Sbjct: 162 EVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAANPFFHV 219

Query: 172 YCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
           + +            + +  + GAT L L    P +  F + ++   +TVL   P++  +
Sbjct: 220 FGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPPTMYNS 268

Query: 231 WRNTNCLEGLDWTKIRSFASTGETS-------NVDDDLWLSSKAWYNAIIESCGGTELSS 283
                     D + +R  A TG  S         + +L +        ++   G +E S 
Sbjct: 269 LLQHPDRSAEDLSSLR-LAVTGAASMPVALLERFESELGVDI------VLTGYGLSEASG 321

Query: 284 AYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRL 341
                 L   +   A +  T  AG    I++E G   P     VGEVG            
Sbjct: 322 VTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVP-----VGEVG------------ 364

Query: 342 LNADHEEVYFRG---------MPMYKGMCLRRHG-----DIIKRTVGGYIIVQGRADDTM 387
                 E+  RG          P      +   G     D+ +    GY+ +  R  D  
Sbjct: 365 ------ELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Query: 388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 447
            +GG      E+E V  +   ++ E A I V     G EV   +VVLK G     ++L +
Sbjct: 419 IVGGFNVYPAEVEEVLYEHP-AVAEAAVIGVPDERLG-EVGKAYVVLKPGAELTEEEL-I 475

Query: 448 IFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 488
            + +   +K    +KV   ++ + E P+ A+ K+L+R LR++
Sbjct: 476 AYCREHLAK----YKVPRSIEFLDELPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 108/515 (20%), Positives = 177/515 (34%), Gaps = 94/515 (18%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD +A+  P ++    ++L  + AG +V +   S+   E+A +L++SK K IF    
Sbjct: 32  LKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDP- 90

Query: 62  ILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 116
                       KV  AA       + IVL +  + V           +D L        
Sbjct: 91  --------DELDKVKEAAKELGPVVRIIVLDSAPDGVLRI--------EDLLEPRLGAED 134

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA------EGWAHIDLKVGD 170
               +P+ +  D    +L+SSGTTG PK +    LS     A      +          D
Sbjct: 135 EFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKNIIANLSQVQDTLKGNPDSSND 191

Query: 171 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
           V           G     +S L GAT+ +      E +F K ++   VT L  VP +  A
Sbjct: 192 VVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TFLKLIEKYKVTSLFLVPPIAVA 250

Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 290
              +  ++  D + +R   S     + +    L  +     I +  G TE   A    + 
Sbjct: 251 LAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPA----TT 306

Query: 291 LQPQAFGAF-STATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 347
           L P       S   +   +   I+DE G           E G                  
Sbjct: 307 LTPPGDEKPGSVGRLVPNVEAKIVDEDG----GKSLGPNERG------------------ 344

Query: 348 EVYFRG---MPMY-------KGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIK 393
           E+  +G   M  Y       K           GDI      G   +  R  + +   G +
Sbjct: 345 ELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQ 404

Query: 394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 453
               E+E V  +  + + + A I +     G E+   +VVLK G          +  + +
Sbjct: 405 VPPAELEAVLLEHPK-VADAAVIGIPDEVAG-ELPRAYVVLKPG--------SKLTEQEV 454

Query: 454 QSKLNPLFKVSLVK-------VVPEFPRTASNKLL 481
           +  +    KV+  K        V E P++ S K+L
Sbjct: 455 KDYVAK--KVAKYKQLRGGVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 111/440 (25%), Positives = 173/440 (39%), Gaps = 67/440 (15%)

Query: 70  PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 129
            L+  +L A  L A+V+PA        L   DL  +D  S     P+           D 
Sbjct: 37  ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85

Query: 130 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 185
            + + F+SGTTG PK +  T +S       T   W  I L+ GD++   ++ GW      
Sbjct: 86  PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142

Query: 186 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 242
             F+ +  GAT+        + R +   ++  GVT     P+    WR      L   D 
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198

Query: 243 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
            ++R   S GE  N +  +     KAW   I +  G TE ++A I  S  Q    G+   
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255

Query: 302 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 352
                 +V+LD+ G   P      GE+         GL   Y+G  ++   A     Y  
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310

Query: 353 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 412
                      R GD   R   GY+   GRADD       + S  E+E         +LE
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA-------LLE 352

Query: 413 TAAISVSPAGGGPE-----VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 467
             A++ +     P+     V   ++VLK G+    +    +F+  ++ +L P  ++  ++
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAH-VRERLAPYKRIRRIE 411

Query: 468 VVPEFPRTASNKLLRRVLRD 487
            V E P+T S K+ R  LR 
Sbjct: 412 FVGELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 109/516 (21%), Positives = 169/516 (32%), Gaps = 137/516 (26%)

Query: 5   GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 64
           GD +A  +P     V++YLA    G V+  I   +  RE+   LR ++A+          
Sbjct: 26  GDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRERELGFILRQARAR---------- 75

Query: 65  GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 124
                              + +P                ++ F    DY   P       
Sbjct: 76  ------------------VLFVPD--------------EFRGF----DYAAMP------- 92

Query: 125 NPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
              D V  +L++SGTTGEPK +  T    L+ +R   E      L   DV   P+ L  +
Sbjct: 93  ---DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG---LTPDDVVLMPSPLAHI 146

Query: 182 MGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNT 234
            G       FL G  L L  G+ +            + +++ GVT        +      
Sbjct: 147 TG-------FLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA 199

Query: 235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC---GGTELSSAYIQGSLL 291
               G D   +R F   G    V  +L                   G ++  AY  G   
Sbjct: 200 ADAAGPDLPSLRVFLCGGAP--VPREL-----------ARRAAEALGAKVVRAY--GMTE 244

Query: 292 QPQAFGAFSTATMTAGLVILDECGVPYP---------DDQP----CVGEV-----GLFPL 333
            P                     G P P         D         GE+      LF  
Sbjct: 245 VPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLF-- 299

Query: 334 YLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 391
            LG  D   N +   ++ +FR             GD+ +    GY+ + GR  D +  GG
Sbjct: 300 -LGYLDPPDNTEAFTDDGWFRT------------GDLGRLDADGYLRITGRKKDIIIRGG 346

Query: 392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 451
              S+ EIE +  +   ++ E A +++     G E +   VV   G +    +L    + 
Sbjct: 347 ENISAREIEDLLLRHP-AVAEVAVVAMPDERLG-ERVCAVVVPAPGASLTLAELTEHLAA 404

Query: 452 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
              +K    +   L  VV   PRT S K+ +  LR+
Sbjct: 405 QGLAK--QKWPERLE-VVDALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 84/384 (21%), Positives = 141/384 (36%), Gaps = 70/384 (18%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 187
           ++++SG+TG+PK +  T   +I C              +      LG   G  +L     
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149

Query: 188 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 236
                    F++ L G TL +       R     +F+    VTV    PSL+      + 
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207

Query: 237 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 293
                   +R+    GE       D W   +   N      G TE  +++   + +  +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257

Query: 294 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 346
              G      T      +LD      PD +P V  G VG   L +G    A   L   + 
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305

Query: 347 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 403
             E +          G  + R GD+++    G +   GR DD + + G +    EIE V 
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVL 365

Query: 404 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 463
                 ++    + +   GG  + LV F+ +      +P  + +   ++   +  P + V
Sbjct: 366 RALPGVVVAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV 423

Query: 464 -SLVKVVPEFPRTASNKLLRRVLR 486
            S+   + E P TAS K+ R+ LR
Sbjct: 424 PSVYVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.1 bits (214), Expect = 5e-18
 Identities = 114/530 (21%), Positives = 170/530 (32%), Gaps = 158/530 (29%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD + + +P     VI+Y A+   G + V    +  A EI    R S+AK     D   
Sbjct: 64  PGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIAD--- 120

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                                                   +  F    DY         +
Sbjct: 121 ---------------------------------------RFSGF----DYAA---LAREL 134

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLG- 179
              +  V     S GTTG PK IP T    L S R +AE    +D   G VY        
Sbjct: 135 LEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAE-ACGLD--PGTVYLAVLPAAH 191

Query: 180 -WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237
            + +    L  + L G T+ L+   SP        ++   VT    VP+L+  W      
Sbjct: 192 NFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIEREKVTHTALVPALLNLWLEAAEW 249

Query: 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ------GSLL 291
           +  D + +R                              GG  LS    +      G  L
Sbjct: 250 DQADLSSLRVIQV--------------------------GGAPLSPELARRVEERLGCPL 283

Query: 292 QPQAFGAFSTATMTAGLV---------------------------ILDECGVPYPDDQPC 324
           Q Q FG      M  GLV                           I+D+ G P P     
Sbjct: 284 Q-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVDDQGEPVPP---- 332

Query: 325 VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 376
            GEVG            Y  A +    A  ++ ++R             GD+++    GY
Sbjct: 333 -GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT------------GDLVRIDADGY 379

Query: 377 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 436
             V GR  D +N GG K S  EIE +      ++ + A + +     G E +  FVV + 
Sbjct: 380 YRVVGRIKDQINRGGEKISPEEIENLLLSHP-AVADAAVVGMPDEVLG-ERICAFVVPRG 437

Query: 437 GFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVL 485
           G      +L+      ++ +    FK+   ++VV   P T   K+ ++ L
Sbjct: 438 GAAPTLAELR----AFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 95/376 (25%), Positives = 143/376 (38%), Gaps = 59/376 (15%)

Query: 134 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSS 190
           L+SSG+TG PK +       +  TAE +A   L +   DV      L +  G    L+  
Sbjct: 167 LYSSGSTGRPKGVVHLH-HDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFP 225

Query: 191 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 250
              GAT  L    P   +    ++    TV   VP+L  A          D + +R   S
Sbjct: 226 LSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVS 285

Query: 251 TGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-- 307
            GE   +  ++    K  +   I++  G TE+   ++     +P A    ++     G  
Sbjct: 286 AGEA--LPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYE 340

Query: 308 LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMY------- 357
           + ++DE G    D     GE+G                  E++ RG      Y       
Sbjct: 341 VKLVDEDGEEVAD-----GEIG------------------ELWVRGDSSAAGYWNRREKT 377

Query: 358 ----KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 413
                G   R  GD   R   GY    GR+DD + + GI  S  E+E        ++LE 
Sbjct: 378 RETFVGEWTRT-GDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEA 435

Query: 414 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKV-SLVKVVP 470
           A +       G      FVVLK G+   P+    +  F K    KL P +K    ++ V 
Sbjct: 436 AVVGA-EDEDGLTKPKAFVVLKDGYQPSPELETELKDFVK---DKLAP-YKYPRWIEFVD 490

Query: 471 EFPRTASNKLLRRVLR 486
           E P+TA+ K+ R  LR
Sbjct: 491 ELPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 47/376 (12%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 183
           D +   L++SGTTG+PK +       +   AE +A   + L+ GD  +        + +G
Sbjct: 91  DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149

Query: 184 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 242
             +LF  F  GA+  L  G P  E       +    TVL  VP+L +A   +       +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207

Query: 243 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 301
             +R   S GE   +   L           I++  G TE+   +I      P A    +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262

Query: 302 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 354
                G    ++DE G   P      G++      L P Y    ++      +       
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316

Query: 355 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 414
                    R GD   R   G+   QGRADD + + G   S +E+E    +   ++ E A
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE-HPAVAEAA 366

Query: 415 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKV-SLVKVVP 470
            ++V P   G   L  FVV + G   Q      +  + +   L      +K    ++ + 
Sbjct: 367 VVAV-PDEDGLVRLKAFVVPRPGEAIQQ-----LLERDLHRFLRERLAPYKCPRQIEFLD 420

Query: 471 EFPRTASNKLLRRVLR 486
             PRTA+ KL R  LR
Sbjct: 421 TLPRTATGKLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 134/544 (24%), Positives = 214/544 (39%), Gaps = 112/544 (20%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + I MPM   A    LA    G +   +   FA+  +A R+  +K   I + D   
Sbjct: 108 RGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGS 167

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK-- 105
           RGG+  P Y  +L  A   A   P                 G DV    LR Q L  +  
Sbjct: 168 RGGKVVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVP 226

Query: 106 -DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-- 162
            ++L S +    P+Y             IL++SGTTG+PK +        R T  G+A  
Sbjct: 227 VEWLESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVA 261

Query: 163 ------HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---K 211
                  I   K G+ +   +++GWV+G   I+++  L G    +Y+G P     G   +
Sbjct: 262 LATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWR 321

Query: 212 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE-----TSN-------- 256
            V+   V  + + P+ ++  +  +   L   D + +R+    GE     T++        
Sbjct: 322 IVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGV 381

Query: 257 -VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG 315
            V D+ W +   W   I+    G E           +P   G+         + +L+E  
Sbjct: 382 PVIDNYWQTETGW--PILAIARGVED----------RPTRLGSPGVPMYGYNVKLLNEV- 428

Query: 316 VPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHEEV--YFR--GMPMYKGMCLRRHG 366
                 +PC   E G+     PL  G    +   D   V  Y+   G  +Y         
Sbjct: 429 ----TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF------ 478

Query: 367 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 426
           D   R   GY  + GR DD +N+ G +  + EIE     +  ++ E A + V  A  G +
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG-Q 536

Query: 427 VLVIFVVLKKGFTSQPDKLKMIFSKAI----QSKLNPLFKVSLVKVVPEFPRTASNKLLR 482
           V V FVV K   +    + ++   K I     S+L  + + + V  V   P+T S KLLR
Sbjct: 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLR 596

Query: 483 RVLR 486
           R ++
Sbjct: 597 RAIQ 600

Length = 629

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 82.8 bits (205), Expect = 6e-17
 Identities = 95/381 (24%), Positives = 150/381 (39%), Gaps = 43/381 (11%)

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           V +  D  + + F+SGTTG PK +  T         T   W  +DL+  D++    + GW
Sbjct: 77  VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133

Query: 181 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237
             G    LF+ +L GA + +Y G     ER+    ++  GVT     P+  +     + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191

Query: 238 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 296
              D++ +R   S GE  N +  D W    A    I +  G TE +   +          
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248

Query: 297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 347
           G+         + I+D+ G   P  +   G++         GLF  YL       + +  
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300

Query: 348 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 407
           E   RG   Y        GD   +   GY    GRADD +   G +    E+E    +  
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353

Query: 408 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 466
             + E A +    P  G  EV+  FVVL  G+    ++L     + ++ +  P      +
Sbjct: 354 A-VAEAAVVGSPDPVRG--EVVKAFVVLAPGYQP-SEELAKELQEHVKKRTAPYKYPREI 409

Query: 467 KVVPEFPRTASNKLLRRVLRD 487
           + V E P+T S K+ R  LR 
Sbjct: 410 EFVEELPKTVSGKIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 89/377 (23%), Positives = 146/377 (38%), Gaps = 43/377 (11%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 182
           D +   +++SGTTG PK +P      +   A  +A+    IDL+  DV+ W   + GW  
Sbjct: 88  DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142

Query: 183 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           G    +      G T    +G     +    ++  GVT     P+  +            
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202

Query: 242 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 299
              K+R  +S GE  N +   W  +      I +  G TE          L  +   G+ 
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261

Query: 300 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 356
                   + +LD+ G P  D     GE G   + + +S  L        +F G    P 
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308

Query: 357 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 412
                +       GD+++R   GY    GRADD +   G +    ++E        ++ E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367

Query: 413 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVV 469
            A + V     G E++  FVVLK+G+    +   +L++   K + +   P      V+ V
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYP----REVEFV 422

Query: 470 PEFPRTASNKLLRRVLR 486
           P  P+T S K+ R +LR
Sbjct: 423 PALPKTPSGKIQRFLLR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 89/392 (22%), Positives = 138/392 (35%), Gaps = 94/392 (23%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 184
           IL++SGTTG PK +  T    +         + L+  DV            P        
Sbjct: 86  ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138

Query: 185 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTV---LGTVPSLV-----KAWRNTN 235
             ++++ L GATL L    S     F   V+  G TV   LG + +++           +
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH 196

Query: 236 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIESCGGTELSSAYIQGSLL 291
            L       +           +   +W    A+       ++E  G TE     I     
Sbjct: 197 PL-----RFVFGAP-------LPAAIW---PAFEERFGVKLVEGYGMTETGVPIIAP--G 239

Query: 292 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV--------GLFPLYLG 336
            P   G       + G         I+DE G   P  +   GE+         +F  Y G
Sbjct: 240 DPAPPG-------SCGRPRPGVEVRIVDEDGREVPPGEV--GELVVRPRRPWAMFKGYYG 290

Query: 337 ASDRLLNADHEEVYFRGMPMYKGMCLRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTS 395
             +    A      +R            H GD  +R   G++    R  D +   G   S
Sbjct: 291 MPEATAKA------WRN--------GWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENIS 336

Query: 396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 455
           S E+E     A  ++ E A ++V    G  EV    VVL+ G T  P+ L + F +    
Sbjct: 337 SYEVEAAI-LAHPAVAEAAVVAVPSELGEDEVKA-VVVLRPGETLDPEAL-LEFCRD--- 390

Query: 456 KLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 486
           +L P F V   ++ V E P+T + K+ +  LR
Sbjct: 391 RL-PYFMVPRYIEFVDELPKTPTEKIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 111/529 (20%), Positives = 193/529 (36%), Gaps = 110/529 (20%)

Query: 1   MFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60
           +  +G+ I I +P +V   +  LA++LAG V V +  +     + +  + +  K + T  
Sbjct: 27  LTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVIT-- 84

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLREQDLSWKD----FLSSVDYH 114
                 R F      L    L+ +V+   G  +     LR + +S  D    FL++    
Sbjct: 85  -----SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRAK-ISKADKLKAFLAA--KL 130

Query: 115 PRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 170
           P       +     D    ILF+SG+ G PK +  +    L++I   A   A IDL   D
Sbjct: 131 PPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIA---AVIDLNTED 187

Query: 171 VYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQGSPLE-RSFGKFVQDAGVTV 220
           V         ++G + LF +F L    L         +Y  +PL+ +   + ++D   T+
Sbjct: 188 V---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATI 238

Query: 221 LGTVPSLVKAW-RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIES 275
           L   P+ ++ + RN +     D++ +R     G    + +      + +       I+E 
Sbjct: 239 LCGTPTFLRGYARNAH---PEDFSSLR-LVVAG-AEKLPEAT---RELFEEKFGIRILEG 290

Query: 276 CGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGLVI--LDECGVPYPDDQPC-VGEV 328
            G TE S          P    + +T       T G  +  ++   V     +   +GE 
Sbjct: 291 YGATECS----------PVI--SVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIGEG 338

Query: 329 GL--------FPLYLGASDR--LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 378
           GL           YL   ++   +    +  Y               GDI K    G++ 
Sbjct: 339 GLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWY-------------DTGDIGKIDEDGFLT 385

Query: 379 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF 438
           + GR      +GG   S   +E +  +        AA+ V     G E +V+    +   
Sbjct: 386 IVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKG-EKIVLLTTTEDL- 443

Query: 439 TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
              P++L  I  +A    L  L     +  V E P   S K   R L+ 
Sbjct: 444 --DPEELNAILREAG---LPNLAVPRKILHVDEIPLLGSGKTDYRGLKK 487

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 115/509 (22%), Positives = 199/509 (39%), Gaps = 70/509 (13%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD +A+ +P      ++ +A I  G V +       A++I  RL+ SKAK I T D + 
Sbjct: 66  RGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDEL- 124

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                         A  + +I        +   L   + S   +L   ++       S  
Sbjct: 125 --------------APAVDSIASEC--PSLKTKLLVSEHSRDGWL---NFKELLKEASTE 165

Query: 124 YNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNL 178
           +  V         I F+SGTTG PK    +  S  +     G   +DL   D+    ++ 
Sbjct: 166 HTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDT 225

Query: 179 GWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236
           GW+   +  LFS ++ GA + ++     + +   + +    +T   + P++ +     + 
Sbjct: 226 GWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQD- 284

Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYIQGSL 290
           L    +  +R   + GE  N +       + W       + E  G TE  L  A  +G  
Sbjct: 285 LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTGLDLYEGYGQTETGLICANFKGMK 339

Query: 291 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG----------LFPLYLGASDR 340
           ++P   G+   A+    + I+D+ G   P      G++G          LF  Y+   ++
Sbjct: 340 IKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GDIGIRVKPTRPFCLFSCYVDNPEK 394

Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
                  + Y  G             D       GY    GRADD +N  G +    E+E
Sbjct: 395 TAATIRGDFYITG-------------DRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVE 441

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNP 459
               +   +++E+A +S SP     EV+  FVVL   F S  P++L     + ++S   P
Sbjct: 442 SALIE-HPAVVESAVVS-SPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAP 499

Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
                 V+ V E P+T + K+ R  LRD+
Sbjct: 500 YKYPRKVEFVQELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.8 bits (195), Expect = 6e-16
 Identities = 87/368 (23%), Positives = 134/368 (36%), Gaps = 38/368 (10%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 192
           I+++SG+TGEPK +  +  +          +++L   D         +  G   L ++F 
Sbjct: 7   IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66

Query: 193 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 252
            G TL L       R   K +    +T    VP+        + L   D+  +R   + G
Sbjct: 67  VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126

Query: 253 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 309
                   L L        +    G TE   S Y+    L  +P + G    A     L 
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183

Query: 310 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 360
           ++DE      D   C  GEVG            Y    +        E   R  P+   +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231

Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS- 419
            L   GD+++    GY+   GR DD +   G + S  EIE V       + E A I V  
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL-VAEAAVIGVPD 289

Query: 420 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 478
           P  G  + +V  VV   G +    +L     K  +  L P + V + +  V   P+ A+ 
Sbjct: 290 PLLG--QAIVAVVVSADGESLDEKELL----KHCRKHL-PNYMVPAEIVFVDSLPKNANG 342

Query: 479 KLLRRVLR 486
           K+ R  LR
Sbjct: 343 KVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 61/382 (15%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 190
           + F+SGTTG+PK +     + +   A     +DL+  DVY W T + GWV G    + + 
Sbjct: 94  LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152

Query: 191 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 248
            LNG TL + +G      +   +++  VTV  T P+ ++             D + +R  
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212

Query: 249 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 296
           AS GE  N +  +W            W+     AI I +  G  +      GS+ +P   
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266

Query: 297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 349
                A +       D         Q  VGE+ L       F  YLG  +R         
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315

Query: 350 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 409
            F     Y        GD+  R   GY    GRADD +   G      E+E         
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESA------- 361

Query: 410 ILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
           ++E  A++ +   G P     E++  FV L+ GF    ++L+       + +L       
Sbjct: 362 LMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP-SEELRRELLTFARQRLGAAVAPR 420

Query: 465 LVKVVPEFPRTASNKLLRRVLR 486
            +  V   P+T S K++RR+L+
Sbjct: 421 EIHFVDNLPKTRSGKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 48/374 (12%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 183
           D V  I F+SGTTG PK         I    + +    L+    DV+     L +   +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205

Query: 184 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 242
            ++LF      + + L Q +P      K +Q+   T+L T P+   A+R     ++  D 
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260

Query: 243 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 296
           + +R   S GET  +   +W   + WY      II+  G TE+   +I  +    +P A 
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315

Query: 297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 356
           G        A   I+D+ G   P      GE G   +      R L+ + ++ Y R    
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 416
                    GDI ++   GY     R+DD +   G   ++ E+E         + E A I
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT-HPDVAECAVI 419

Query: 417 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEF 472
            V P     +++   +VL+ G  ++  +L    ++ +Q    + + P      +  V   
Sbjct: 420 GV-PDEERGQIVCAHIVLRDG--TKATEL---LAERLQDFVKAVIAPYKYPREINFVDAL 473

Query: 473 PRTASNKLLRRVLR 486
           P+T + K+ R  LR
Sbjct: 474 PKTQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 105/402 (26%), Positives = 144/402 (35%), Gaps = 99/402 (24%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 182
           D    I ++SGTTG PK    T  + +       A    L  GD    P  L    G V+
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 183 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 234
           G   + +S   GATL L +         KF        ++   +T L  VP++  A    
Sbjct: 61  G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104

Query: 235 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 287
             LE  D+ K     +R+  S G  + V  +L    +  +    I    G TE S    Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161

Query: 288 GSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNAD 345
            S   P     +     T G  +   E  +  PD      GEVG                
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG---------------- 200

Query: 346 HEEVYFRGMPMYKG---------------MCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390
             E+  RG  + KG                 L   GD+      GY+ + GR  D +  G
Sbjct: 201 --EICVRGYSVMKGYYNDPEATAEAIDADGWLHT-GDLGYMDEDGYLRIVGRIKDMIIRG 257

Query: 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 445
           G      EIE         + E A + V      P     EV+  FVVLK G T   ++L
Sbjct: 258 GENIYPAEIEEALLTHPA-VAEAAVVGV------PDERLGEVVAAFVVLKPGATLTEEEL 310

Query: 446 KMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 486
                   + +L   FKV   V+ V E PRTAS K+ +  LR
Sbjct: 311 I----AFCRGRLAR-FKVPRYVRFVDELPRTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.5 bits (184), Expect = 4e-14
 Identities = 111/520 (21%), Positives = 193/520 (37%), Gaps = 89/520 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 62
           KGD +A+    +   +  Y A+   G V+  I       EIA  L  ++ + +    +F+
Sbjct: 55  KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                  PL + +L   P    V+   G+    PL  +   +++ L++        +  P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 175
             +  DA   +L++SGTTG PK +  +   L         W  + L   DVY      + 
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219

Query: 176 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 231
            +  G    P +   + + GA   +   +    L       ++   VT    VP++ +  
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPTIWQML 269

Query: 232 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSL 290
                   +D++ +R     G  + +   L    K  +   +++  G TE S   +    
Sbjct: 270 LKAPRAYFVDFSSLRLVIYGG--AALPPALLREFKEKFGIDLVQGYGMTETSPV-VSVLP 326

Query: 291 LQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV---------GLFPLY 334
            + Q  G ++    +AG         I+D+ G   P D   VGE+         G    Y
Sbjct: 327 PEDQLPGQWTKRR-SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQG----Y 381

Query: 335 LG---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 391
                A+   ++                  L   GD+      GY+ +  R  D +  GG
Sbjct: 382 WNRPEATAETIDGGW---------------LHT-GDVGYIDEDGYLYITDRIKDVIISGG 425

Query: 392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 451
                 E+E        ++ E A I V     G   +   VVLK G T    +L+     
Sbjct: 426 ENIYPRELEDALY-GHPAVAEVAVIGVPDEKWGERPVA-VVVLKPGATLDAKELR----A 479

Query: 452 AIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRDQIK 490
            ++ +L   FK+   +  V E PRT+  K+L+RVLR+Q  
Sbjct: 480 FLRGRLAK-FKLPKRIAFVDELPRTSVGKILKRVLREQYA 518

Length = 521

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 73.0 bits (180), Expect = 9e-14
 Identities = 112/518 (21%), Positives = 180/518 (34%), Gaps = 115/518 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A+ +  +   V+  LAI+ AG   V +  ++ A  +A  L  S A+ + T +   
Sbjct: 36  PGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE--- 92

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                                            L     + +  L  ++         P 
Sbjct: 93  --------------------------------SLAPLARADQLPLVILEEELDAEDAGPP 120

Query: 124 YNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGW 180
              VDA  +  ++++SG+TG PK +       +R      +  I L   D +   + L +
Sbjct: 121 APAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNY--IALDPDDRFLQLSPLSF 178

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVK--AWRNTNC 236
                 ++ + LNG  L L     L       + + + GVTVL    +L       +   
Sbjct: 179 DASTFEIWGALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEA 238

Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 296
           L GL     R     G+  +          A    ++ +C G  L + Y  G    P   
Sbjct: 239 LAGL-----RQLLVGGDVLSP---------AHVRRVLAACPGLRLINGY--G----PTEN 278

Query: 297 GAFSTA-TMTAG-----------------LVILDECGVPYPDDQP---CVGEVGLFPLYL 335
             FST   +T                   + ILDE G P P   P    VG  GL   YL
Sbjct: 279 TTFSTCHVITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYL 338

Query: 336 GASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 391
              +  L A         +  G  +Y      R GD+ +    G I   GR D  + + G
Sbjct: 339 NRPE--LTAERFVPDP--FGPGERLY------RTGDLARWRPDGNIEFLGRIDRQVKIRG 388

Query: 392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 451
            +    EIE+   Q     +  AA+ V     G + LV +VV +    +           
Sbjct: 389 FRIELGEIEQALLQHPG--VREAAVLVREDAAGDKRLVAYVVARGALDAA---------- 436

Query: 452 AIQSKLN---PLFKV-SLVKVVPEFPRTASNKLLRRVL 485
            +++ L    P + V +   V+ E P TA+ K+ RR L
Sbjct: 437 ELRAHLAERLPAYMVPAAFVVLDELPLTANGKVDRRAL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 26/364 (7%)

Query: 133 ILFSSGTTGEPKAI--PWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFS 189
           ++++SGTTG PK        L       E +  +  + GDV+  P +  W+ G + +L  
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGLLDVLLP 152

Query: 190 SFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 247
           +   G  +  Y+      ER+F   ++  GVT     P+ +K  R           ++R+
Sbjct: 153 ALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSERARYDLRLRA 211

Query: 248 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG 307
            AS GE+   +   W +       + E  G TE +      + L P   G+         
Sbjct: 212 VASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHE 270

Query: 308 LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGMPMYKGMCLR 363
           + ++D+ G P P      GEVG   +        L    N +     F G  +       
Sbjct: 271 VAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWL------- 318

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
             GD+ +R   GY+  +GRADD +   G +    EIE  C     ++LE A + V     
Sbjct: 319 LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEE-CLLKHPAVLEAAVVGVPDPER 377

Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
           G E++  FVVL +G     D+L     + ++S+L        ++ V E P T + K+ RR
Sbjct: 378 G-EIVKAFVVLAEGVEP-SDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRR 435

Query: 484 VLRD 487
            LR 
Sbjct: 436 ELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 71.3 bits (176), Expect = 2e-13
 Identities = 97/387 (25%), Positives = 145/387 (37%), Gaps = 73/387 (18%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 187
           D    IL++SGTTG PK +  T  + +       A +DL  GDVY     L  +  P  L
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51

Query: 188 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239
           + +      L AL  G    L   F        ++   VT    VP++ +          
Sbjct: 52  YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111

Query: 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 296
            D + +R        + +  +L  +   W+  +  +  G TE        +LL P+ +  
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166

Query: 297 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 353
             G+         + I+DE G   P      GEVG                  E+  RG 
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203

Query: 354 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
             M  Y          LR      GD+      GY+ +  R  D +  GG      E+E 
Sbjct: 204 AVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263

Query: 402 VCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
           V      ++ + A I V     G  E +V  VVL+ G T   ++L   F +    +L   
Sbjct: 264 VLLA-HPAVADVAVIGVPDEEWG--EAVVAVVVLRPGATLDAEELIA-FCRE---RLAG- 315

Query: 461 FKV-SLVKVVPEFPRTASNKLLRRVLR 486
           +KV   V+ V E PR AS K+L+R LR
Sbjct: 316 YKVPKSVEFVDELPRNASGKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 92/392 (23%), Positives = 142/392 (36%), Gaps = 80/392 (20%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV-YCWPTNLGWVMG 183
           D    IL +SGTTG PK +P T    L+S R  A+      L   D           VM 
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK---LTPSDRCLN-------VMP 51

Query: 184 P-------VILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 233
                   V L ++ L G ++      P + S  KF   +    VT    VP++ +    
Sbjct: 52  LFHIHGLIVSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLK 107

Query: 234 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI------ 286
           T     G    ++R F  +         L    K +   ++E+ G TE +          
Sbjct: 108 TAKPNPGKPPPRLR-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP 166

Query: 287 ----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 337
                GS+ +P              + ILD+ G P P  Q   GE+ +        YL  
Sbjct: 167 LVRKPGSVGRPAG----------VEVAILDDDGRPLPPGQ--EGEIVIRGPNVTAGYLNN 214

Query: 338 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 397
            +    A  +  +FR             GD+      GY+ + GR  + +N GG K S  
Sbjct: 215 PEANREAFRDG-WFRT------------GDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261

Query: 398 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 456
           E+E V  +    + E     V     G  E +   VVL+       ++L+    K + + 
Sbjct: 262 EVEEVLLRHPA-VAEAVVFGVPDELYG--EEVAAAVVLRADSKVTIEELRDFARKRLAA- 317

Query: 457 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 487
               FKV   +  V   P+ A+ K+ RR L +
Sbjct: 318 ----FKVPKKILFVDALPKGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 82/426 (19%), Positives = 135/426 (31%), Gaps = 79/426 (18%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A+ +  +   V+  LA++ AG   V +  ++ A  +A  L  + A+ + T     
Sbjct: 24  PGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS--- 80

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                          A   A ++  +     + L   D +           P    Y   
Sbjct: 81  -------------ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLAY--- 124

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
                    ++++SG+TG PK +  T  S +   A       L   D      +L +   
Sbjct: 125 ---------VIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDAS 175

Query: 184 PVILFSSFLNGATLALYQGSPLERSFGKFVQDA----GVTVLGTVPSLVKAWRNTNCLEG 239
              +F + L GATL +      ER     +        VTVL   PSL+        L  
Sbjct: 176 VEEIFGALLAGATLVVPPED-EERDDAALLAALIAEHPVTVLNLTPSLLAL------LAA 228

Query: 240 LDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSL 290
                + S       GE         L+     +       G  L + Y      +  + 
Sbjct: 229 ALPPALASLRLVILGGE--------ALTPAL-VDRWRARGPGARLINLYGPTETTVWSTA 279

Query: 291 LQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDR 340
                  A   + +  G       L +LD+   P P        +G  G+   YL     
Sbjct: 280 TLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLN--RP 337

Query: 341 LLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
            L A            G  +Y      R GD+++    G +   GR DD + + G +   
Sbjct: 338 ELTAERFVPDPFAGGDGARLY------RTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIEL 391

Query: 397 VEIERV 402
            EIE  
Sbjct: 392 GEIEAA 397

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 116/524 (22%), Positives = 206/524 (39%), Gaps = 75/524 (14%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +AI +P   +AVI Y   +LAG +VV     +  RE+  +L  S AK I   D + 
Sbjct: 73  KGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLV- 131

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSW-------KDFLSSVDYHPR 116
                FP  + V  A  ++ +++  I + +  P   ++L +        + +  V     
Sbjct: 132 -----FPRVTNVQSATKIEHVIVTRIADFLPFP---KNLLYPFVQKKQSNLVVKVSESET 183

Query: 117 PNYYSPVYNPVDAVVNIL-----------FSSGTTGEPKAIPWTQLSSIRCTAEG--WAH 163
            + ++ V   V+  V +            ++ GTTG PK +  T  + +  T  G  W +
Sbjct: 184 IHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLY 243

Query: 164 IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 222
              +  +V         V G   ++  S + G  + L     ++  F + ++   VT+  
Sbjct: 244 NCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVF-EAIKKHKVTLFP 302

Query: 223 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS 282
             P++  A  N+  L+  D + IR+  S      V+      +      ++E  G TE S
Sbjct: 303 GAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTG-GKLVEGYGLTESS 361

Query: 283 SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 342
                  L + +  G+                GVP+PD +  +       + L   + L 
Sbjct: 362 PVTHSNFLWEKRVPGSI---------------GVPWPDTEAMI-------MSLETGEALP 399

Query: 343 NADHEEVYFRGMPMYKGMCLR-------------RHGDIIKRTVGGYIIVQGRADDTMNL 389
             +  E+  +G  + KG   +               GD+      G+  V+ R  D +  
Sbjct: 400 PGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVA 459

Query: 390 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 449
            G      E+E V  + ++ + E   I V     G E +  FVVLK+G     ++L    
Sbjct: 460 SGFNVYPREVEEVLYEHEK-VQEVVTIGVPDPYRG-ETVKAFVVLKEGTECSEEELNQFA 517

Query: 450 SKAIQSKLNPLFKVSLV-KVVPEFPRTASNKLLRRVLRDQIKHE 492
            K + +     +KV  V +   E P+T   K+LRRVL ++ K +
Sbjct: 518 RKYLAA-----YKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK 556

Length = 563

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 108/456 (23%), Positives = 172/456 (37%), Gaps = 95/456 (20%)

Query: 76  LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 127
           L A+ L A++  A     +G+D     R        F++S D       P        P 
Sbjct: 81  LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 187
           + V  ILF+SGT+G+PK +  ++  +++ TA                  N G V+G V  
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175

Query: 188 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 226
            SSFL                     G ++ +  G   +R+ G+      G+T    VP 
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235

Query: 227 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 284
           + +A+R     +      + +  + G     +D L      W +  I    G  +S A  
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290

Query: 285 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 335
                +   +++ +A GA    T T    ++D+ G   P   P  GE+      L P Y 
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347

Query: 336 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 395
                   A   + +FR             GDI +R   G+  V  R  D    GG    
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395

Query: 396 SVEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 454
             EIE V   AD   I E A + ++ A  G EV  + +V   G     ++++   S  + 
Sbjct: 396 PAEIEAVL--ADHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLA 452

Query: 455 SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 489
                 +KV   +++V   PRTAS KL +  LRD +
Sbjct: 453 K-----YKVPKHLRLVDALPRTASGKLQKARLRDAL 483

Length = 488

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 116/518 (22%), Positives = 188/518 (36%), Gaps = 107/518 (20%)

Query: 3   SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62
           SK   IAI +   +  + ++    +AG+  V +   +   E+  RL +S A  I T+ + 
Sbjct: 48  SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYK 107

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
           L                 L       I  D           WK  +    Y P    Y+P
Sbjct: 108 LN---------------DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAP 137

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLG 179
           + N  +A   + F+SG+TG+PKA    Q S   S  C             D +    +  
Sbjct: 138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS- 186

Query: 180 WVMGPVILFSS-FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKAW 231
            V+    L  S FL GA   LY G    L R F        ++   ++V+ TVP+++++ 
Sbjct: 187 -VLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESL 245

Query: 232 RNTNCL---------EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS 282
              N +          G  W       +  +  N+    +  +K +     E  G +ELS
Sbjct: 246 YKENRVIENKMKIISSGAKWEAE----AKEKIKNI----FPYAKLY-----EFYGASELS 292

Query: 283 ---SAYIQGSLLQPQAFG-AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGAS 338
              +   + S  +P + G  F         V +  C     + Q   GE+G   +Y+ + 
Sbjct: 293 FVTALVDEESERRPNSVGRPFHN-------VQVRICNEAGEEVQK--GEIGT--VYVKSP 341

Query: 339 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 398
              +      V  R +     M +R  G   +    G+I + GR  + +  GGI     E
Sbjct: 342 QFFMGYIIGGVLARELNADGWMTVRDVGYEDEE---GFIYIVGREKNMILFGGINIFPEE 398

Query: 399 IERVCDQADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 457
           IE V  +    + E   I V     G   V +I    K   T Q  +LK         +L
Sbjct: 399 IESVLHEHPA-VDEIVVIGVPDSYWGEKPVAII----KGSATKQ--QLK----SFCLQRL 447

Query: 458 NPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
           +  FK+      V E P T S K+ R   +  I+++  
Sbjct: 448 SS-FKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEK 484

Length = 487

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 42/238 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-AREIATRLRVSKAKGIFTQDFI 62
           KGD + +  P ++   +++LA++ AG  VV+ A+      EIA +++ S AK   T    
Sbjct: 56  KGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLYTPAEIAKQVKDSGAKLAITTS-- 112

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                   L  K+   A    ++L +  +                +  + +   P     
Sbjct: 113 -------ELAEKLASLALEPVVLLDSADDGSA------------AIDDLLFADEPEPPVV 153

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 179
           V    D    + +SSGTTG  K +  T    ++++     G    +    DV      + 
Sbjct: 154 VIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEG-PNFDREDVTLCVLPMF 211

Query: 180 WVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF---VQDAGVTVLGTVPSLVKA 230
            + G     +  L      L  G+ +         KF   ++   VT L  VP +V A
Sbjct: 212 HIYG----LTVILLA---LLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLA 262

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 90/382 (23%), Positives = 139/382 (36%), Gaps = 49/382 (12%)

Query: 128  DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 185
            D +  ++++SG+TG+PK  AI    L++  C       + L   D     +   + +G  
Sbjct: 656  DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713

Query: 186  ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
             LF +  +GATL L     +    +F   + D GVTVL  VPS ++A    + +      
Sbjct: 714  ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771

Query: 244  KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 302
              R+    GE   VD    + +      +I   G TE +       L  + + FG     
Sbjct: 772  PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831

Query: 303  TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 356
               A  GL ILD    P P     VGE     LY+G    A             F   P 
Sbjct: 832  QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884

Query: 357  -YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 415
               G  L R GD+ +    G I   GR D  + + G +    EIE     A   + E   
Sbjct: 885  GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE-ARLLAQPGVREAVV 943

Query: 416  ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF--- 472
            ++     G    LV ++V                   +++         L +V+P++   
Sbjct: 944  LAQPGDAG--LQLVAYLVPAAVADGAE---HQATRDELKA--------QLRQVLPDYMVP 990

Query: 473  ---------PRTASNKLLRRVL 485
                     P T + KL R+ L
Sbjct: 991  AHLLLLDSLPLTPNGKLDRKAL 1012

Length = 3956

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 111/493 (22%), Positives = 189/493 (38%), Gaps = 52/493 (10%)

Query: 6   DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRG 65
           + + + M   V   I +L  I AG V V++     A + A  L  S+A+ +F    +L  
Sbjct: 56  ERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL-- 113

Query: 66  GRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYN 125
               P+    LG +P     +     + G      ++   + L++         + P   
Sbjct: 114 ----PVIKAALGKSPHLEHRVVVGRPEAG------EVQLAELLAT-----ESEQFKPAAT 158

Query: 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNL--GWV 181
             D     L+SSG+TG PK +  T  S+   TAE +A   + ++  DV      L   + 
Sbjct: 159 QADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAELYARNTLGIREDDVVFSAAKLFFAYG 217

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
           +G  + F   + GAT  L    P   +    ++    T+   VP+L  A      L   D
Sbjct: 218 LGNALTFPMSV-GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED 276

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFS 300
             ++R   S GE   +  ++    +A +   I++  G TE+   ++      P      +
Sbjct: 277 QVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSN---LPGDVRYGT 331

Query: 301 TATMTAG--LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL--NADHEEVYFRGMPM 356
           +     G  L ++ + G          GE G   +   +S  +   N       F+G   
Sbjct: 332 SGKPVPGYRLRLVGDGGQDVAA-----GEPGELLISGPSSATMYWNNRAKTRDTFQGE-- 384

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 416
                  R GD   R   G     GR DD + + GI  S  EIE        ++LE A +
Sbjct: 385 -----WTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESAL-IQHPAVLEAAVV 438

Query: 417 SVSPAGG--GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 474
            V    G   P+    F+VL+ G       L+    + ++ +L P      +  V + P+
Sbjct: 439 GVEDEDGLIKPKA---FIVLRPGQDI-DTALETELKEHVKDRLAPYKYPRWIVFVDDLPK 494

Query: 475 TASNKLLRRVLRD 487
           TA+ K+ R  LR+
Sbjct: 495 TATGKIQRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 73/269 (27%), Positives = 116/269 (43%), Gaps = 45/269 (16%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD + I MP         L  +  G +V  + ++F    +  RL  S+AK + T   +L
Sbjct: 97  KGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALL 156

Query: 64  RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                     K     P LK ++L  +G DV                 +D++      S 
Sbjct: 157 E--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LDFNALMEQASD 195

Query: 123 VYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHIDLKVGDVYCWP 175
            ++       D    IL ++SG+TG+PK +     + ++    G +  +DL   DVY W 
Sbjct: 196 EFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LDLHEDDVY-WC 251

Query: 176 T-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPS----L 227
           T + GWV G    +F+ +LNGAT  +  G  SP ER +   ++D  VTV  T P+    L
Sbjct: 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVWYTAPTAIRML 309

Query: 228 VKAWRNTNCLEGLDWTKIRSFASTGETSN 256
           + A    + ++  D + +R   S GE  N
Sbjct: 310 MGA--GDDLVKKYDLSSLRHILSVGEPLN 336

Length = 570

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 119/542 (21%), Positives = 211/542 (38%), Gaps = 98/542 (18%)

Query: 3   SKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKA 53
           SK D + I M  T+  +I  L+         ++  GY V S+ D      I  +L ++  
Sbjct: 115 SKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRI--ETITPKLIITTN 172

Query: 54  KGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLPAIGNDV----------GIPLRE 99
            GI   + I      F     +  A  L       V+    ND+           IP   
Sbjct: 173 YGILNDEII-----TFT--PNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIP 225

Query: 100 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQLSSIRCT 157
             LSW D +  +  + +  +Y   Y PV++   + IL++SGTTG  KA+  +    +   
Sbjct: 226 NTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGL 283

Query: 158 AEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-----SPLERSFGK 211
              W + I+  +  V    +++GWV     L+ S   G T  +++G       +E     
Sbjct: 284 KYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWN 343

Query: 212 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 271
            ++   VT   T+P  ++    T+     + T IR   S  + SN+  ++W   +    +
Sbjct: 344 TIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR---SKYDLSNL-KEIWCGGEVIEES 395

Query: 272 I---IES---------CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-------VILD 312
           I   IE+          G TE+   Y+         +G  +      G+        IL 
Sbjct: 396 IPEYIENKLKIKSSRGYGQTEIGITYLYC-------YGHINIPYNATGVPSIFIKPSILS 448

Query: 313 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 372
           E G     ++  +GEV  F L +  S       ++E + +    + G      GD+  + 
Sbjct: 449 EDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKFKQLFSKFPGY--YNSGDLGFKD 503

Query: 373 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL------ETAAISVSPAGGGPE 426
             GY  +  R+DD + + G K     IE        SIL      E  +I +        
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIE-------TSILKHPLVLECCSIGIYDPDCY-N 555

Query: 427 VLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
           V +  +VLK+  ++Q    +KLK   +  I   +  L  +  + +V + P+T + K+ R+
Sbjct: 556 VPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQ 615

Query: 484 VL 485
           ++
Sbjct: 616 II 617

Length = 647

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 87/393 (22%), Positives = 136/393 (34%), Gaps = 85/393 (21%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 187
           ++++SG+TG PK +       +   A       L  GD      +       W      +
Sbjct: 98  VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152

Query: 188 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
           F   L+GATL L        P      + +++  +TVL  VPSL++A  +      L   
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208

Query: 244 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 297
            +R     GE                    E   G  L +AY      +  +  +     
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258

Query: 298 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 347
                ++  G       + +LDE   P P   P    +G  G+   YL   +  L A+  
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315

Query: 348 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD-------TMNLGGIK 393
              F        G  +Y      R GD+ +    G +   GRADD        + LG   
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG--- 363

Query: 394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 453
               EIE     A   + E A +     G G + LV +VV   G      +L+      +
Sbjct: 364 ----EIEAAL-LAHPGVRE-AVVVAREDGAGEKRLVAYVVPAAGAELDAAELR----AFL 413

Query: 454 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVL 485
             +L P + V S   V+   P T + K+ R+ L
Sbjct: 414 AERL-PDYMVPSAFVVLDALPLTPNGKVDRKAL 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD+  R   GY    GR  D M + G    +  IER+  +  +   E A  +V     G 
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPD-ATEVAVYAVPDPVVGD 444

Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
           +V+   +VL  G    PD      +   Q  L P    S V+V  E PRTA+ K+L+R L
Sbjct: 445 QVMAA-LVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501

Query: 486 RDQ 488
             +
Sbjct: 502 SAE 504

Length = 529

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 128/551 (23%), Positives = 193/551 (35%), Gaps = 140/551 (25%)

Query: 5   GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT------ 58
           GD +A  +P      IIYLA +  G V V +  S+   E+   L   +AK  F       
Sbjct: 74  GDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQ 133

Query: 59  ---QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 115
               D IL    + P   +++G   L     PA             LS    ++      
Sbjct: 134 TRPVDLILPLQNQLPQLQQIVGVDKLA----PAT----------SSLSLSQIIAD----- 174

Query: 116 RPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKV 168
               Y P+   +    D +  +LF+SGT G PK +  T    L+S R             
Sbjct: 175 ----YEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER------------- 217

Query: 169 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT---VLGTVP 225
              YC   NL W    V +  + L  AT  L+                GVT   ++G   
Sbjct: 218 --AYCARLNLTW--QDVFMMPAPLGHATGFLH----------------GVTAPFLIGARS 257

Query: 226 SLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTE 280
            L+  +    CL  L+  + R     G T  + D L L  K   +  + +     CGGT 
Sbjct: 258 VLLDIFTPDACLALLE--QQRCTCMLGATPFIYDLLNLLEKQPAD--LSALRFFLCGGTT 313

Query: 281 LSSAYIQ-----GSLLQPQAFGAFSTATMTAGLVILDEC--------GVPYP-------D 320
           +     +     G  L    +G  ST +    +V LD+         G           D
Sbjct: 314 IPKKVARECQQRGIKLL-SVYG--STESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD 370

Query: 321 DQ----PCVGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 368
           +     P  G  G        +F  YL   +    A  EE ++     Y G       D+
Sbjct: 371 EARKTLPP-GCEGEEASRGPNVFMGYLDEPELTARALDEEGWY-----YSG-------DL 417

Query: 369 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 428
            +    GYI + GR  D +  GG   SS E+E +  Q    I +   +++     G E  
Sbjct: 418 CRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQH-PKIHDACVVAMPDERLG-ERS 475

Query: 429 VIFVVLKKGFTSQP--DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
             +VVLK    S    + +     K +     P      + V+ + PRTAS K+ + +LR
Sbjct: 476 CAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP----EHIVVIDKLPRTASGKIQKFLLR 531

Query: 487 DQIKHELSVRS 497
             I   L+   
Sbjct: 532 KDIMRRLTQDV 542

Length = 547

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 381 GRADDTMNLGGIKTSSVEIERVCDQADESILE---TAAISVSPAGGGPEVLVIFVVLKKG 437
           GR  D + + G+   + EIE   +Q     +E   TAA +V  AG G + L +F V +  
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVP--GVEPSFTAACAVRDAGSGTDELAVFFVPRYD 505

Query: 438 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLRDQ 488
              +   L     +AI++ +     ++   V+P    +FP+T+  K+ R  LR +
Sbjct: 506 LDDRLAAL----LRAIRTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRKR 556

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 83/315 (26%), Positives = 108/315 (34%), Gaps = 88/315 (27%)

Query: 126 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVY--CWPTNLGW 180
               V     S GTTG PK IP T      S+R +AE           VY    P    +
Sbjct: 187 DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNF 243

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
            +        FL G T+ L      E  F   ++  GVTV   VP L             
Sbjct: 244 PLSSPGALGVFLAGGTVVLAPDPSPELCF-PLIERHGVTVTALVPPLAS----------- 291

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYIQ------GS 289
                               LWL +  W  A + S      GG  LS+   +      G 
Sbjct: 292 --------------------LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGC 331

Query: 290 LLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFPLYLGA 337
            LQ Q FG      M  GLV           I+   G P  PDD+  V +    P+  G 
Sbjct: 332 QLQ-QVFG------MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGE 384

Query: 338 SDRLL-----------NAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 385
              LL            A  H    F     Y      R GD+++R   GY++V+GR  D
Sbjct: 385 VGELLTRGPYTIRGYYRAPEHNARAFDADGFY------RSGDLVRRDPDGYLVVEGRVKD 438

Query: 386 TMNLGGIKTSSVEIE 400
            +N GG K ++ E+E
Sbjct: 439 QINRGGEKIAAEEVE 453

Length = 542

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 91/455 (20%), Positives = 157/455 (34%), Gaps = 84/455 (18%)

Query: 3   SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD-- 60
             GD +AI         I  LAI+  G V V I  +    ++A  L  S++K IF ++  
Sbjct: 68  PAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQE 127

Query: 61  ----FILRGGRKFPLYSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSV 111
                +        +   ++    ++  V        +  D GI L   D        S 
Sbjct: 128 LLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SA 179

Query: 112 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGD 170
               R     P     D +  I+++SGTTG PK +  T  + +   A     +  +  GD
Sbjct: 180 GLEGRIAPPKP-----DDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGD 234

Query: 171 VY-CW-PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL- 227
               + P  L  +          L G    L++  P  R+  + +++   TV+  VP + 
Sbjct: 235 RVLSFLP--LAHIFERAFEGGLALYGGVTVLFKEDP--RTLLEDLKEVRPTVMIGVPRVW 290

Query: 228 -----------VKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 275
                       KA      L         +  +           L ++ +  +  I ++
Sbjct: 291 EKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDA 350

Query: 276 CGGTELSSAYIQGSLLQPQAFGAFSTA-----------TMTAGLVILDECGVPYPDDQPC 324
            GG  +  A   G+ L P+    F  +           T T+ +V ++      P D+  
Sbjct: 351 LGG-RIRYALSGGAPLSPEL-LHFFRSLGIPILEGYGLTETSAVVSVN------PPDRFV 402

Query: 325 VGEVG-LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR--------------RHGDII 369
           +G VG   P   G   ++  AD  E+  RG  + KG                  R GD+ 
Sbjct: 403 LGTVGKPLP---GIEVKI--ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG 457

Query: 370 KRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVC 403
           +    GY+++ GR  + + L  G   +   IE   
Sbjct: 458 ELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL 492

Length = 613

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 11/122 (9%)

Query: 364 RHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 421
           + GD+      GY  + GR  DD +  GG K S++EIE         + E A I V  P 
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL-EHPGVAEVAVIGVPDPD 375

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 480
            G  E +V  VV + G      +L+       + KL P +K+   V VV E PR A  K+
Sbjct: 376 WG--EAVVAVVVPEAGAALTLAELR----AWAREKLAP-YKIPKRVIVVDELPRNAMGKV 428

Query: 481 LR 482
            +
Sbjct: 429 QK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 18/132 (13%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD+      GYI V  R  D +  GG   +S E+E        ++ E A I +      P
Sbjct: 400 GDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT-HPAVAEVAVIGL------P 452

Query: 426 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 479
                E +   VV K G T   D+L +   +A   +L   FKV   V  V E PR  S K
Sbjct: 453 DPKWIEAVTAVVVPKAGATVTEDEL-IAHCRA---RLAG-FKVPKRVIFVDELPRNPSGK 507

Query: 480 LLRRVLRDQIKH 491
           +L+R LR++   
Sbjct: 508 ILKRELRERYAG 519

Length = 523

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 105/501 (20%), Positives = 165/501 (32%), Gaps = 106/501 (21%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            G  +A+    ++  V++  A +L G  +  +       E   +L     + + T     
Sbjct: 23  SGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS--- 79

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                  L  K   A  L  I              E  LS                    
Sbjct: 80  ------LLEEKDFQADSLDRIEAAG--------RYETSLS-------------------A 106

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGW--V 181
              +D +  ++F+SGTTG+PKA+P T   +   +A G    +L   +   W  +L    +
Sbjct: 107 SFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGSKE-NLGFTEDDNWLLSLPLYHI 164

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQD---AGVTVLGTVPSLVKAWRNTNCLE 238
            G  ILF   + GATL +         F + ++      VT +  VP+ +    +    E
Sbjct: 165 SGLSILFRWLIEGATLRIVDK------FNQLLEMIANERVTHISLVPTQLNRLLD----E 214

Query: 239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-AIIESCGGTELSSAYIQGSLLQPQAFG 297
           G     +R     G          +     Y   I  S G TE  S              
Sbjct: 215 GGHNENLRKILLGGSAIPAP---LIEEAQQYGLPIYLSYGMTETCSQ------------- 258

Query: 298 AFSTATMTAGLVILDECGVPYP--------DDQPCVGEV-----GLFPLYLGASDRLLNA 344
              T      L    + G P          D++   GE+      L   YL   + L  A
Sbjct: 259 --VTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGE-LTPA 315

Query: 345 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
             ++ +F              GDI +    G++ V GR DD +  GG      EIE V  
Sbjct: 316 FEQQGWFNT------------GDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLY 363

Query: 405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
           Q     ++ A +   P     +V V ++V      S   + K+I    +  KL       
Sbjct: 364 QHPG--IQEAVVVPKPDAEWGQVPVAYIV----SESDISQAKLIAY--LTEKLAKYKVPI 415

Query: 465 LVKVVPEFPRTASNKLLRRVL 485
             + + E P  AS K+LR  L
Sbjct: 416 AFEKLDELPYNASGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 111/509 (21%), Positives = 183/509 (35%), Gaps = 65/509 (12%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A     T R + +Y A+   G V+ ++    +  +IA  +  ++ K IF  D  L
Sbjct: 49  PGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFL 108

Query: 64  RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                 PL   +    P +KA+V+    +     L     ++++ L        P Y  P
Sbjct: 109 ------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PNVYAYEELLEEES----PEYEWP 157

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----RCTAEGWAHIDLKVGDVYCWPTN 177
             +   A   + ++SGTTG PK + ++  S +         +      L   D       
Sbjct: 158 ELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLG---LSESDTVLPVVP 213

Query: 178 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237
           +  V    + +++ + GA L L        S    +++  VTV   VP++     N    
Sbjct: 214 MFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEA 273

Query: 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELS----SAYIQGSLL 291
            G D + +R     G          L  K       +I + G TE S     + ++  L+
Sbjct: 274 NGKDLSSLRRVVVGGSAL----PRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLV 329

Query: 292 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV-----GLFPLYLGASD 339
                          G         I+D+ G   P D   VGE+      +   Y     
Sbjct: 330 DLPEEEKLE-LRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYK--- 385

Query: 340 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
              + +  E   R           R GD+      GYI +  RA D +  GG   SSVE+
Sbjct: 386 ---DPEKTEELTRDGWF-------RTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVEL 435

Query: 400 ERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 458
           E        ++ E A + V     G  E  +  VVLK G     ++L    +K +     
Sbjct: 436 ENALMAH-PAVAEAAVVGVPHEKWG--ERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWL 492

Query: 459 PLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
           P      V  V E P+T+  K  ++ LR+
Sbjct: 493 P----DRVVFVDEIPKTSVGKFDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 86/414 (20%), Positives = 139/414 (33%), Gaps = 65/414 (15%)

Query: 3   SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62
             G+ +AI    ++  V+  LA++ AG   V +   + A  +A  L  S+   + TQ   
Sbjct: 275 GPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA-- 332

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                                       +DVG+P    D +  +   +           P
Sbjct: 333 ------------------------HLRVDDVGLPGLALDDALSEIPDTDP--------IP 360

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 182
                DA+  I+++SG+TG+PK +     +      +  A   L   D      +L +  
Sbjct: 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDA 420

Query: 183 GPVILFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLVK--AWRNTNC 236
               +F + L GA L L     Q  P      + ++  G+TVL  VP L++         
Sbjct: 421 SVFEIFGALLEGARLVLAPALLQVDPAA--LLELLEAQGITVLLLVPLLLRLLLLAALAP 478

Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG-----TELSSAYIQGSLL 291
                  ++R   S GE   +     L   A     + +  G      +  S  I   L 
Sbjct: 479 DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE 538

Query: 292 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC--VGEVGLFPLYLGASDRLLNADH-EE 348
                G     T    L ILD+         P    GE+ +  L L A   L   D   E
Sbjct: 539 SRVPIGRPVANTQ---LYILDQ----GLRPLPLGVPGELYIAGLGL-ALGYLNRPDLTAE 590

Query: 349 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 402
            +     +Y      R GD+ +    G +   GR D  + + G +    EIE  
Sbjct: 591 RFIAL-RLY------RTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAA 637

Length = 642

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 77/324 (23%), Positives = 104/324 (32%), Gaps = 106/324 (32%)

Query: 126 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 174
             D V     S G+TG PK IP T      S+R + E             CW        
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227

Query: 175 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 231
              P    + +        F  G  + L         F   ++   VTV   VP  V   
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284

Query: 232 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 286
                                        LW+ + +   A + S      GG + S+A  
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315

Query: 287 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 328
           +      G  LQ Q FG      M  GLV           I    G P  PDD+  V + 
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368

Query: 329 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 376
              P+  G +  LL              +H    F     Y        GD+++ T  GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422

Query: 377 IIVQGRADDTMNLGGIKTSSVEIE 400
           I+V GRA D +N GG K ++ EIE
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIE 446

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 109/527 (20%), Positives = 169/527 (32%), Gaps = 164/527 (31%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A+    +  A    LA + AG   V +  S  A     R+               
Sbjct: 40  AGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQPA----ERIA-------------- 81

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                     K+L AA   A+V                             P    Y   
Sbjct: 82  ----------KILEAAGPAALV---------------------------ADPDDLAY--- 101

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
                    ILF+SG+TG+PK +  +     S +      W   D  + +          
Sbjct: 102 ---------ILFTSGSTGKPKGVQISHANLASFL-----DWMVEDFDLTE---------- 137

Query: 181 VMGPVI--------------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLG 222
             G V               LF +  +GATL +        PL     +F+++ G+TV  
Sbjct: 138 --GDVFSNQAPFSFDLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWV 193

Query: 223 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-----IIESCG 277
           +VPS       +  L       +R+F   GE           +KA         II   G
Sbjct: 194 SVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKL-----AKALRRRFPNARIINLYG 248

Query: 278 GTELSSA--YIQGSLLQPQAFG------AFSTATMTAGLVILDECGVPYPDDQP---CVG 326
            TE + A    + +                         +ILDE G P P  +     + 
Sbjct: 249 PTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLR----ALILDEDGRPVPPGEEGELVIA 304

Query: 327 EVGLFPLYLGASDRLLNADHEEVYFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 384
              + P YL   ++       + +F+  G   Y      R GD++     G ++  GR D
Sbjct: 305 GPQVSPGYLNNPEK-----TAKAFFQDEGQRWY------RTGDLVYLEDDGLLVYLGRKD 353

Query: 385 DTMNLGGIKTSSVEIERVCDQADESIL------ETAAISVSPAGGGPEVLVIFVVLKKGF 438
             + L G +   +E+E +     E+ L      E A +   P G     LV FVV K+G 
Sbjct: 354 FQIKLHGYR---IELEEI-----EAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 439 TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
                 LK    K ++ +L P         +   P  A+ K+ R+ L
Sbjct: 406 LD-TKALK----KELKKRLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 26/173 (15%)

Query: 335 LGASDRLLNADH---EEVYFRGMPMYKG-----------MCLRRHG-----DIIKRTVGG 375
             A   LLNAD    E V   G   ++G           M   RHG     D+  R   G
Sbjct: 338 FDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM---RHGMYWSGDLAYRDADG 394

Query: 376 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 435
           +I   GR  D M + G   S+  IER+      +I   A  +V     G +V+   +VL+
Sbjct: 395 WIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGDQVMAA-LVLR 452

Query: 436 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
            G T  PD        A Q  L        V++  + P TA+NK+L+R L  Q
Sbjct: 453 DGATFDPDAFAAFL--AAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQ 503

Length = 540

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 74/360 (20%), Positives = 116/360 (32%), Gaps = 29/360 (8%)

Query: 133  ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 192
            ++++SG+TG+PK +     +             L VGD     T   + +    LF   +
Sbjct: 3201 VIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLM 3260

Query: 193  NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL-DWTKIRSFAST 251
            +GA + L  G    R     V+      +  + +     +     E     T ++     
Sbjct: 3261 SGARVVL-AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCG 3319

Query: 252  GETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLV 309
            GE    D      +    YN      G TE +        ++                  
Sbjct: 3320 GEALPADLQQQVFAGLPLYNLY----GPTEATITVTHWQCVEEGKDAVPIGRPIANRACY 3375

Query: 310  ILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRH 365
            ILD    P P     VG +G   LYLG    A             F   P   G  L R 
Sbjct: 3376 ILDGSLEPVP-----VGALG--ELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRT 3428

Query: 366  GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
            GD+ +    G I   GR D  + + G +    EIE         + E   ++V       
Sbjct: 3429 GDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIE-ARLLEHPWVREAVVLAVD-----G 3482

Query: 426  EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
              LV +VV +       + LK     ++   + P   + L       P T + KL R+ L
Sbjct: 3483 RQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFL----ERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           R GD+      G++ +  R  D +  GG   +S E+ERV  +  E + E A I V     
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPE-VAEAAVIGVHDDRW 434

Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 482
           G  +  + VVL  G T   + L     + + S     FKV   +KV  E PR  S K+L+
Sbjct: 435 GERITAV-VVLNPGATLTLEALDRHCRQRLAS-----FKVPRQLKVRDELPRNPSGKVLK 488

Query: 483 RVLRDQI 489
           RVLRD++
Sbjct: 489 RVLRDEL 495

Length = 497

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 374 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFV 432
            G +++ GRA D + + G      +IERV +Q +   L   AA  V       E +VIFV
Sbjct: 381 NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFV 440

Query: 433 VLKK---GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRD 487
             ++    FT          +  I+  +N    +++  V+P    P+T S K+ R  L  
Sbjct: 441 EYRQSLDDFTP--------LALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQ 492

Query: 488 QIK 490
           Q  
Sbjct: 493 QFL 495

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 115/518 (22%), Positives = 182/518 (35%), Gaps = 82/518 (15%)

Query: 5   GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 64
           GD +A+ M      V+  LA   A  VVV +  +    E   R + + A+ +   D    
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126

Query: 65  GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 123
             R  P         PL   V    G   G      D             P P   +P  
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 178
             P DA+  I+F+ GTTG PK +PWT     SS+R    G+    L   D  V   P   
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228

Query: 179 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 238
           G  +   +L +    GA L   +G     +F   ++  G T    VP++ +        E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288

Query: 239 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 291
                      IRS ++  T ET+      + +       ++ + G TE   A  Q +  
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339

Query: 292 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 347
           Q +  G      ++ GLV      +  +   D  P   G VG                  
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381

Query: 348 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394
           EV+ RG  + +G                 R GD+   +  G + ++GR  + +N GG K 
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441

Query: 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 454
           S   +E V      +++E A   V     G  V  + +V ++      ++L     +  +
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYGEAVAAV-IVPRESAPPTAEEL----VQFCR 495

Query: 455 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
            +L      +  +     P TA   L RR + +Q  H 
Sbjct: 496 ERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533

Length = 534

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           R  D+      G + + GR DD +  GG      E+ERV  +A   + E   I +     
Sbjct: 379 RTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRA-PGVTEVVVIGLPDERW 437

Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
           G + +   VV ++G T   D L         S+L    +      + E P+ A NK+LRR
Sbjct: 438 G-QSVTACVVPREGETLSADALDTF---CRASELADFKRPRRYFFLDELPKNAMNKVLRR 493

Query: 484 VL 485
            L
Sbjct: 494 QL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QD 60
             KGD +A+  P T   +  +  + +AG V+V +     A +IA  L  S+AK +F  Q+
Sbjct: 51  IGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQE 110

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 120
           F         L  + L     K I+   I          ++  ++D L+  D  P     
Sbjct: 111 F-------LSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP----- 158

Query: 121 SPVYNPVD--AVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 174
                P D    +++ ++SGTTG PK + +T   +            +    VY W
Sbjct: 159 -LPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 25/161 (15%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A+ +P   +  I++  I+  G V V ++  F   E++  L  + A+ +   D + 
Sbjct: 82  AGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA 141

Query: 64  RGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVGIPL-------REQDLSWKDFLS 109
                 P+  +V     L+ +       VLPA      +PL       R       D L 
Sbjct: 142 ------PVVEQVRAETSLRHVIVTSLADVLPAEPT---LPLPDSLRAPRLAAAGAIDLLP 192

Query: 110 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 150
           ++     P    P    +DA+  + ++ GTTG PK    TQ
Sbjct: 193 ALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCEHTQ 231

Length = 567

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 434
           GYI ++ R+ D +  GG   SS+E+E V  +   ++LE A ++      G E    FVVL
Sbjct: 415 GYIEIKDRSKDIIISGGENISSIEVEGVLYKHP-AVLEAAVVARPDEKWG-ETPCAFVVL 472

Query: 435 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
           K G +   ++L + + +    KL   FKV       E P+TA+ K+ + VLR+
Sbjct: 473 KPGASVTEEEL-IEYCRE---KL-AHFKVPKTVEFVELPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 35/190 (18%)

Query: 310 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC-------- 361
           ++DE     PD +P  GE+            LL AD    +  G   Y GM         
Sbjct: 356 VVDEHDQELPDGEP--GEL------------LLRADEPFAFATG---YFGMPEKTVEAWR 398

Query: 362 -LRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 419
            L  H GD + R   G+     R  D +   G   SS E+E+V   +  ++   A   V 
Sbjct: 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL-LSHPAVAAAAVFPVP 457

Query: 420 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 478
              G  EV+   VVL+ G   +P  L     +  + +L   F V   V+ V   P+T + 
Sbjct: 458 SELGEDEVMAA-VVLRDGTALEPVAL----VRHCEPRL-AYFAVPRYVEFVAALPKTENG 511

Query: 479 KLLRRVLRDQ 488
           K+ + VLR+Q
Sbjct: 512 KVQKFVLREQ 521

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 111/470 (23%), Positives = 178/470 (37%), Gaps = 111/470 (23%)

Query: 78  AAPLKAIV--------------LPAIGND-----VGIPLREQDLSWKDFLSSVD----YH 114
           AA +K IV               P  G+      VG P+ E    W DF   ++      
Sbjct: 117 AAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPE---GWIDFDKEIENASPDF 173

Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVY 172
            RP          D ++ + F+SGTTG PK +       +    TA+ W   ++K G ++
Sbjct: 174 ERPT--GNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQ--NVKEGGLH 229

Query: 173 CWPTNLGW---VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA--------GVTVL 221
               + GW   V G   L+  ++ GA + +Y        + KF            GVT  
Sbjct: 230 LTVADTGWGKAVWGK--LYGQWIAGAAVFVY-------DYDKFDPKNLLEKIEKYGVTTF 280

Query: 222 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESC 276
              P+    L+K       L   D + +R   + GE  N +  + +         ++E  
Sbjct: 281 CAPPTIYRFLIKE-----DLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI--KLMEGF 333

Query: 277 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGE-------- 327
           G TE +        ++P+  G+    +    + I+D      PD + C VGE        
Sbjct: 334 GQTETTLTIATFPWMEPKP-GSMGKPSPGYDIDIID------PDGKSCEVGEEGEIVIRT 386

Query: 328 -----VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 382
                +GLF  Y    +R     H+  Y  G             D       GY+   GR
Sbjct: 387 SDGKPLGLFMGYYRDPERTAEVWHDGYYHTG-------------DTAWMDEDGYLWFVGR 433

Query: 383 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQ 441
           ADD +   G +    E+E    Q   ++LE A   V  P  G  +V+   +VL KG+   
Sbjct: 434 ADDLIKSSGYRIGPFEVESALIQ-HPAVLECAVTGVPDPIRG--QVVKATIVLTKGYEPS 490

Query: 442 PDKLKMIFSKAIQ---SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 487
            ++LK    K +Q    K+   +K   +++ V E P+T S K+ R  +R+
Sbjct: 491 -EELK----KELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 91/385 (23%), Positives = 133/385 (34%), Gaps = 48/385 (12%)

Query: 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV-Y-CWPT--NLGWVM 182
           VD    I ++SGTTG PKA   +    +R  A       LK  DV Y C P   +    +
Sbjct: 81  VDPAFYI-YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTV 139

Query: 183 GPVILFSSFLNGATLALYQGSPLERSFG--KF---VQDAGVTVLGTVPSLVKAWRNTNCL 237
           G     S+   GA+LAL       R F   +F   V+  G T    V  L +   N    
Sbjct: 140 GWS---SALAAGASLAL------RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEK 190

Query: 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQA 295
                  +R     G       D+W   K  +    I+E  G TE +  +I      P A
Sbjct: 191 PDDRDHPLRKIIGNGLR----PDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNK-PGA 245

Query: 296 FGAFSTATMTAGLVILDECGVPYPDDQPCV----GEVGLFPLYLGASDRLL-------NA 344
            G    A +      ++        +  C+    GEVGL    LG             + 
Sbjct: 246 VGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGL---LLGEITDRNPFDGYTDDE 302

Query: 345 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
             E+   R +   KG      GD+++R   GY     R  DT    G   S+ E+E V  
Sbjct: 303 ATEKKILRDV-FKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLA 361

Query: 405 QADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 463
           +    + E     V  P   G   +   + L  G    P        + + +   PLF  
Sbjct: 362 KH-PGVEEANVYGVEVPGTEGRAGMAA-LTLAPGAAFDPQAFAAHLDEQLPAYARPLF-- 417

Query: 464 SLVKVVPEFPRTASNKLLRRVLRDQ 488
             ++V      T + K  +  LR +
Sbjct: 418 --LRVQAAMETTGTFKYQKTDLRKE 440

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 71/387 (18%)

Query: 128 DAVVNILFSSGTTGEPK--AIP---------WTQLSSIRCTAEGWAHI--------DLKV 168
           D +  ++++SG+TG PK  AI          W        +AE  A +        DL V
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAV---FSAEELAGVLAATSICFDLSV 161

Query: 169 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV 228
            +++  P + G   G V+L  + L  A   L   +  E           VT++ TVPS  
Sbjct: 162 FEIFV-PLSTG---GRVVLADNAL--ALPDLP--AKAE-----------VTLINTVPSAA 202

Query: 229 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 288
           +     + L     + +R+    GE    +    L +      +    G +E  + Y   
Sbjct: 203 RELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE-DTTYSTY 257

Query: 289 SLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLN 343
           + ++P A    S     AG    +LD    P P   P    +G  G+   YLG  +  L 
Sbjct: 258 AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPE--LT 315

Query: 344 AD----HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
           A+    +      G  +Y      R GD+++R   G +   GR DD + + G +    EI
Sbjct: 316 AERFLPNPFAGSPGERLY------RTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEI 369

Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
           E    ++   + E   +++  A G  + LV ++V   G     + L+      + ++L P
Sbjct: 370 EA-ALRSIPGVAEAVVVAIGDAAGDRQ-LVAYIVADPGAAIDIEDLR----ARLATRL-P 422

Query: 460 LFKV-SLVKVVPEFPRTASNKLLRRVL 485
            + V S    +   P T + K+ R+ L
Sbjct: 423 AYMVPSRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 117/540 (21%), Positives = 200/540 (37%), Gaps = 124/540 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG-IFTQDFI 62
           +GD ++  +P      ++YLA    G V+  +   F  RE++  L+ +++K  +  + F 
Sbjct: 79  RGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTF- 137

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
               R F   +      P     LPA+ + V +   +   S++  L +  +   P+  + 
Sbjct: 138 ----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFEALLITPAWEQEPDAPAI 188

Query: 123 VYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT 176
           +       D V  ++++SGTTGEPK +  T    +++I   AE    + L   DV    +
Sbjct: 189 LARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE---RLGLGADDVILMAS 245

Query: 177 NLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT-VLGTVPSLV 228
            +    G       PV+L      GAT A+ Q         + ++  GVT  + + P L 
Sbjct: 246 PMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAELIRTEGVTFTMASTPFLT 298

Query: 229 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 288
              R      G   + +R+F                           C G     A I G
Sbjct: 299 DLTRAVK-ESGRPVSSLRTFL--------------------------CAG-----APIPG 326

Query: 289 SLLQPQAFGAFSTATMTA------GLVIL-------------DECGVPY-------PDDQ 322
           +L++ +A  A     ++A      G V L             D C +P         D  
Sbjct: 327 ALVE-RARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGA 385

Query: 323 PC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 373
           P   G++G         F  YL      LN    + +F              GD+ +   
Sbjct: 386 PLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGWFDT------------GDLARIDA 431

Query: 374 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 433
            GYI + GR+ D +  GG     VEIE +  +     +   AI   P     E    FVV
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA--IAQVAIVAYPDERLGERACAFVV 489

Query: 434 LKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
            + G +    + ++ + ++ +  +  P   V    V    PRT S K+ +  LR+ ++ E
Sbjct: 490 PRPGQSLDFEEMVEFLKAQKVAKQYIPERLV----VRDALPRTPSGKIQKFRLREMLRGE 545

Length = 547

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 109/522 (20%), Positives = 174/522 (33%), Gaps = 113/522 (21%)

Query: 8    IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 67
            + I +  ++  V+  LAI+ AG   V +   +    +A  +  S  + + TQ  +     
Sbjct: 1627 VGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA--- 1683

Query: 68   KFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP- 126
            + PL         L+++VL            +Q+  W      ++ +   N   P  N  
Sbjct: 1684 RLPL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLA 1716

Query: 127  VDAVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 175
               +  ++++SG+TG PK            +  TQ +     A+          DV  W 
Sbjct: 1717 PQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE 1776

Query: 176  TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW- 231
                       LF   +NGA L +       R   + +Q      VT L  VPS+++   
Sbjct: 1777 -----------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 232  ----RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE--LSSA 284
                +  +         +R     GE   V+    WL        +    G TE  +   
Sbjct: 1825 QMDEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTETAVDVT 1877

Query: 285  YIQGSLLQPQAFGAFSTATMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 342
            +        +   +       A     ILD    P P      GE     LYLG    L 
Sbjct: 1878 HWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVP--IGVAGE-----LYLGG-VGLA 1929

Query: 343  NADHEEV-----YFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
                         F   P    G  L R GD+ +    G I   GR D  + + G +   
Sbjct: 1930 RGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIEL 1989

Query: 397  VEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 455
             EIE R+ +Q    + E   I+   A G  + LV +VV        P    ++     Q 
Sbjct: 1990 GEIEARLREQGG--VREAVVIAQDGANG--KQLVAYVV--------PTDPGLVDDDEAQV 2037

Query: 456  KLNPLFKVSLVKVVPEF------------PRTASNKLLRRVL 485
             L  + K  L   +PE+            P T + KL R+ L
Sbjct: 2038 ALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKAL 2079

Length = 3956

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 60/266 (22%), Positives = 94/266 (35%), Gaps = 61/266 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD + + +P     V+ +L     G V  +    +   EIA + + S AK I TQ    
Sbjct: 74  QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQS--- 130

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF--LSSVDYHPRPNYYS 121
                     K+ G A    + +  I +     L   +L+  D   L  V+  P      
Sbjct: 131 ------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEISP------ 178

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-------LKVGDV--- 171
                 D VV + +SSGTTG PK +  T    +   A+    +D           DV   
Sbjct: 179 ------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGENPNLYFHSDDVILC 229

Query: 172 -------YCWPTNLGWVMGPVILFSSFLNGATLALYQ----GSPLERSFGKFVQDAGVTV 220
                  Y   +         +L      GA + +      G+ LE      +Q   VT+
Sbjct: 230 VLPMFHIYSLNS---------VLLCGLRVGAAILIMPKFEIGALLE-----LIQRHKVTI 275

Query: 221 LGTVPSLVKAWRNTNCLEGLDWTKIR 246
              VP +V A   +  +E  D + IR
Sbjct: 276 APFVPPIVLAIAKSPVVEKYDLSSIR 301

Length = 537

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +A     +    +++LA   AG V V +       E+A  L  S A+       
Sbjct: 58  LKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA 117

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           +       P     L   P+  ++L  +     +  RE    W DF              
Sbjct: 118 LA------PTAEAALALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEP 164

Query: 122 PVYNPVDAVVNILFSSGTTGEPK-------AIPWTQLSSI 154
            V    D +  IL++SGT   PK       A+    +S I
Sbjct: 165 DVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI 204

Length = 523

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 114/493 (23%), Positives = 191/493 (38%), Gaps = 71/493 (14%)

Query: 8    IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 67
            + + M  ++  V+  LAI+ AG   V +   + A  +A  L  S  + + +Q  +   GR
Sbjct: 564  VGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHL---GR 620

Query: 68   KFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 127
            K PL      AA ++ + L                +W +  S  +     N  +  Y   
Sbjct: 621  KLPL------AAGVQVLDLDRPA------------AWLEGYSEENPGTELNPENLAY--- 659

Query: 128  DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMG 183
                 ++++SG+TG+PK        LS+  C    W      L VGD     T   + + 
Sbjct: 660  -----VIYTSGSTGKPKGAGNRHRALSNRLC----WMQQAYGLGVGDTVLQKTPFSFDVS 710

Query: 184  PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAWRNTNCLEGL 240
                F   ++GA L +       R   K V+     GV  L  VPS+++A+     +   
Sbjct: 711  VWEFFWPLMSGARLVV-AAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA-- 767

Query: 241  DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
              T +R    +GE    D    + +K     +    G TE +      + ++ +   +  
Sbjct: 768  SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE-EGGDSVP 826

Query: 301  TATMTAGL--VILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRG 353
                 A L   ILD    P P     +GE+     GL   Y G     L A+     F  
Sbjct: 827  IGRPIANLACYILDANLEPVP--VGVLGELYLAGRGLARGYHGRPG--LTAER----FVP 878

Query: 354  MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILE 412
             P   G  + R GD+ +    G I   GR D  + L G++    EIE R+ +     + E
Sbjct: 879  SPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEH--PWVRE 936

Query: 413  TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF 472
             A ++V     G + LV +VVL+       + LK   + ++   + P   ++L ++    
Sbjct: 937  AAVLAV----DGKQ-LVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERL---- 987

Query: 473  PRTASNKLLRRVL 485
            P T + KL R+ L
Sbjct: 988  PLTPNGKLDRKAL 1000

Length = 5163

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 123/533 (23%), Positives = 188/533 (35%), Gaps = 99/533 (18%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A  +P              AG +   I       +IA  LR + AK + T    L
Sbjct: 82  PGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVT----L 136

Query: 64  RGGRKFPLYSKV---LGAAP-LKAIVLPAIGNDVGIPLREQDLSWK--------DFLSSV 111
                  ++ KV   L A P L+ +V   +   +  P R      +        DF + +
Sbjct: 137 GPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAEL 196

Query: 112 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKV 168
              P    +S      D V     + GTTG PK    T  + +   A  W     + L  
Sbjct: 197 ARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEV---ANAWLGALLLGLGP 253

Query: 169 GDVYCWPTNLGWVMGP-VILFSSFLNGATLAL-----YQGSPLERSFGKFVQDAGVTVLG 222
           GD       L  V    V   +    GA + L     Y+G  +  +F K V+   +  L 
Sbjct: 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLS 313

Query: 223 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGET---SNVDDDLWLSSKAWYNAIIESCGGT 279
            VP++  A       +G D + +R +A  G       V      ++      I+E  G T
Sbjct: 314 GVPTVYAALLQVPV-DGHDISSLR-YALCGAAPLPVEVFRRFEAATGV---RIVEGYGLT 368

Query: 280 ELSSAYIQGSLLQPQAFGA----FSTATMTAGLVILDECGVPYPDDQPCVGEVGL----- 330
           E +           +  G+         +    VILD+ G  Y  D   V EVG+     
Sbjct: 369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRV--VILDDAG-RYLRDCA-VDEVGVLCIAG 424

Query: 331 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH----GDIIKRTVGGYIIVQGRA 383
              F  Y       L A H           KG+ L       GD+ +    GY  + GRA
Sbjct: 425 PNVFSGY-------LEAAHN----------KGLWLEDGWLNTGDLGRIDADGYFWLTGRA 467

Query: 384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGF 438
            D +  GG       IE       E++L   A++++ A G P     E+ V +V LK G 
Sbjct: 468 KDLIIRGGHNIDPAAIE-------EALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGA 520

Query: 439 TSQPDKLK-----MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
           ++   +L       I  +A   K         V+++   P+TA  K+ +  LR
Sbjct: 521 SATEAELLAFARDHIAERAAVPK--------HVRILDALPKTAVGKIFKPALR 565

Length = 632

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 434
           G++  + RADDT  +GG+     E+ER+  + + ++ E A ++V  + G    L  F+V 
Sbjct: 379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDE-AVAEAAVVAVRESTGA-STLQAFLVA 436

Query: 435 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQ 488
             G T     ++ +    + ++L+  FKV     VV   PRT + KL+R  LR Q
Sbjct: 437 TSGATIDGSVMRDLHRGLL-NRLSA-FKVPHRFAVVDRLPRTPNGKLVRGALRKQ 489

Length = 705

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 114/514 (22%), Positives = 185/514 (35%), Gaps = 82/514 (15%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD ++  +P       +YLA    G V+  +   F  RE++  L  + +K +F    + 
Sbjct: 77  RGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSK-VFVVPSVF 135

Query: 64  RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI------PLREQDLSWKDFLSSVDYHPR 116
           RG     +  ++    P L+ +V+     D         P R+        L+     PR
Sbjct: 136 RGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAG----PR 191

Query: 117 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYC 173
           P   SP     D V  ++++SGTTGEPK +  T     S+I   AE    ++L  GDV  
Sbjct: 192 P---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE---RLELGGGDVIL 240

Query: 174 WPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 233
             +       P+   + F+ G  + L                    +L     L   W  
Sbjct: 241 MAS-------PMAHQTGFMYGLMMPL--------------------ILNATAVLQDIWNP 273

Query: 234 TNCLEGLDWTKIR-SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS--- 289
               E +  T +  + AST   +++   +  S     +     C G  +    ++ +   
Sbjct: 274 ARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWEL 333

Query: 290 --LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG-EVGLFPLYLGASDRLLNADH 346
              L   A+G      +T              D +P  G EV +         +L   + 
Sbjct: 334 LGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID---ANGAKLSQGET 390

Query: 347 EEVYFRGMPMYKGMCLRRH------------GDIIKRTVGGYIIVQGRADDTMNLGGIKT 394
             +  RG   + G   R H            GD+  +   GYI + GR+ D +  GG   
Sbjct: 391 GRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENI 450

Query: 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI-FSKAI 453
             VEIE +  Q     +   AI   P     E     VV K G T   D   M+ F KA 
Sbjct: 451 PVVEIENLLYQ--HPAVAQVAIVAYPDERLGERACAVVVPKPGCTL--DFAAMVAFLKAQ 506

Query: 454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
           +  L   +    ++VV   P T + K+ +  LR+
Sbjct: 507 KVALQ--YIPERLEVVDALPATPAGKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 308 LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNAD---HEEVYFRGMPMYKGMC 361
           + +LDE   P P   P    +G  G+   YLG  +  L A+    +     G  +Y    
Sbjct: 269 VYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPE--LTAERFVPDPFDDPGGRLY---- 322

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
             R GD+++    G +   GRADD + + G +    EIE          +  A + V   
Sbjct: 323 --RTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VADAVVVVREE 378

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 480
           G G + LV +VV K G     + L+     A+++ L P + V +    + E P T + K+
Sbjct: 379 GPGDQRLVAYVVPKAGAAPDAEALR----AALRATL-PAYMVPAAFVQLDELPLTPNGKV 433

Query: 481 LRRVL 485
            R+ L
Sbjct: 434 DRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 81/403 (20%), Positives = 126/403 (31%), Gaps = 101/403 (25%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD---VYCWPTNLGWVMGP 184
           D V  I ++SGTTG PK    T   ++  TA   A       D   +   P  L  V G 
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTH-RTVLATAAASAAWSGLTPDSVLLAFLP--LFHVAG- 139

Query: 185 VILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237
                         +Y G+ L         +  + ++   VT    + ++V         
Sbjct: 140 ------MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRF 193

Query: 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ-----GSLLQ 292
              D + ++                              GG  L  A  +       LL 
Sbjct: 194 ADYDLSSLKVVG--------------------------GGGAALPPAVAERLKALTGLLY 227

Query: 293 PQAFGAFSTA---TMTAGL-VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE- 347
            + +G   T                 G+P       V +          +   L    E 
Sbjct: 228 EEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDP--------ETGEELPPGEEG 279

Query: 348 EVYFRGMPMYKGM---------CLR--------RHGDIIKRTVGGYIIVQGRADDTMNLG 390
           E+  RG  ++KG                     R GD+      GY     R    +N+ 
Sbjct: 280 EIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339

Query: 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK---KGFTSQPD---- 443
           G K    E+E +  Q   ++LE   I       G EV+  FVVLK   +G  ++ D    
Sbjct: 340 GYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRRG-EVVKAFVVLKPDYRGKVTEEDIIEW 397

Query: 444 -KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
            + +M   K             +++ V E P+TAS K+L R+L
Sbjct: 398 CRERMAAYKY----------PRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 109/502 (21%), Positives = 180/502 (35%), Gaps = 83/502 (16%)

Query: 8    IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 67
            +AI    +   V+  LA++ AG   V +  ++ A  +A  L  S A  + TQ        
Sbjct: 2056 VAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQ-------- 2107

Query: 68   KFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 127
                   +L   PL A V         +PL ++D  W D+  +    P            
Sbjct: 2108 -----RHLLERLPLPAGV-------ARLPL-DRDAEWADYPDT---APAVQLAG------ 2145

Query: 128  DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 185
            + +  ++++SG+TG PK  A+    L +  C A G  + +L   D      +  +     
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVA-HCQAAGERY-ELSPADCELQFMSFSFDGAHE 2203

Query: 186  ILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
              F   LNGA + +        E+ + + ++  GVT+L   P  ++        +G    
Sbjct: 2204 QWFHPLLNGARVLIRDDELWDPEQLYDE-MERHGVTILDFPPVYLQQLAEHAERDG-RPP 2261

Query: 244  KIRSFASTGETSNVDD-DLW---LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 299
             +R +   GE        L    L     +N      G TE   A +   L + +     
Sbjct: 2262 AVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY----GPTE---AVVTPLLWKCRPQDPC 2314

Query: 300  STATMTAG-------LVILDECGVPYPDDQPCVGEVGLFPLYLGAS-------DR-LLNA 344
              A +  G         ILD             GE     LYLG         +R  L A
Sbjct: 2315 GAAYVPIGRALGNRRAYILDADLNLLA--PGMAGE-----LYLGGEGLARGYLNRPGLTA 2367

Query: 345  DHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 403
            +     F   P    G  L R GD+ +    G +   GR D  + + G +    EIE   
Sbjct: 2368 ER----FVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIE-AR 2422

Query: 404  DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 463
             QA  ++ E   ++   A G  + LV +VV          +L+   +  + + + P   V
Sbjct: 2423 LQAHPAVREAVVVAQDGASG--KQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWV 2480

Query: 464  SLVKVVPEFPRTASNKLLRRVL 485
             L ++    P   + KL R+ L
Sbjct: 2481 VLERL----PLNPNGKLDRKAL 2498

Length = 5163

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG- 422
           R GD+      G  + Q R  D++ LGG   +  EIE     A E++   AA  V  A  
Sbjct: 409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIE----HALEALPGVAAAQVVGATR 464

Query: 423 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTAS---N 478
            G  V V FV+   G +     L      A +  L   FKV + V+VV  FP T S    
Sbjct: 465 DGKTVPVAFVIPTDGASPDEAGLM----AACREALAG-FKVPARVQVVEAFPVTESANGA 519

Query: 479 KLLRRVLRDQ 488
           K+ +  LR+ 
Sbjct: 520 KIQKHRLREM 529

Length = 540

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 86/386 (22%), Positives = 133/386 (34%), Gaps = 80/386 (20%)

Query: 138 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 193
           GTTG PK    +  + +   A  W       L  GDV      L  V G ++   +    
Sbjct: 12  GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68

Query: 194 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 248
           GAT+ L     ++   +  +F K V+   VT+L  VP+++ A      L   D + +R +
Sbjct: 69  GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126

Query: 249 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 305
           A TG       V       +      ++E  G TE +                 S     
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168

Query: 306 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 342
            G       G+  P                + C  GEVG        +FP YL  +    
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225

Query: 343 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
           NA    E+ +               GD+ +    GY+ + GRA D +  GG       IE
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIE 273

Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                   ++   AA+    A  G E+ V +V LK G T    +L       I  +    
Sbjct: 274 EAL-LRHPAVALAAAVGRPDAYAG-ELPVAYVQLKPGATVTEGELLAFVKARIPER--AA 329

Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
              + + ++   P TA  K+ +  LR
Sbjct: 330 VPKA-IYIIDALPLTAVGKIFKPRLR 354

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 35/137 (25%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAG-- 422
           GD       GY   QGR DD      IKTS    ERV     ES L E  A  V+ AG  
Sbjct: 437 GDSAYMDEDGYFWFQGRVDDV-----IKTSG---ERVGPFEVESKLMEHPA--VAEAGVI 486

Query: 423 GGP-----EVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPL-------FKVSLVKVV 469
           G P     E++  FV L+ G+  +P ++LK      ++  L          FK  L    
Sbjct: 487 GKPDPVRGEIIKAFVALRPGY--EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKL---- 540

Query: 470 PEFPRTASNKLLRRVLR 486
              P+T S K++RRVL+
Sbjct: 541 ---PKTRSGKIMRRVLK 554

Length = 570

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 466 VKVVPEFPRTASNKLLRRVLRDQIKHE 492
           V+ V E P+T S K+LRR+LR     E
Sbjct: 7   VEFVDELPKTRSGKILRRLLRAIALGE 33

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
           GD++     GYI V GR  D +N GG K ++ EIE
Sbjct: 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448

Length = 536

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 434
           G + V GR D+ +  GG     +E+E+      + + E A I V     G + L  FVVL
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYG-QRLAAFVVL 487

Query: 435 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRD 487
           K G ++ P+ LK      + +     +KV   + V+ E PR A+ K+LRR L+ 
Sbjct: 488 KPGASATPETLKQHVRDNLAN-----YKVPRDIVVLDELPRGATGKILRRELQA 536

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QD 60
            +KG  +AI MP  ++  +   A++ AGYVVV++   +  RE+  +L+ S A+ I   ++
Sbjct: 70  LAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLEN 129

Query: 61  FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 95
           F            +VL    +K +V+ ++G+ +G 
Sbjct: 130 FA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157

Length = 557

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           R GDI      GY+ +  R  + +   G + +  ++E V     E I++ A  +V     
Sbjct: 433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE-IIDAAVTAVPDKEC 491

Query: 424 GPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 482
           G E+ V FVV ++G T SQ   +  +       ++ P  KV  V  V   P++ + K+LR
Sbjct: 492 G-EIPVAFVVRRQGSTLSQEAVINYV-----AKQVAPYKKVRKVVFVQSIPKSPAGKILR 545

Query: 483 RVLRDQIKHELSVRSRI 499
           R L+  +    SV SR+
Sbjct: 546 RELKRSLT--NSVSSRL 560

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 434
           G++ V  R  D +  GG      EIE V   +   + E   + V     G +V V FVV 
Sbjct: 374 GFLYVLDRRSDLIISGGENIYPAEIEEVL-LSHPGVAEAGVVGVPDDKWG-QVPVAFVVK 431

Query: 435 KKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIK 490
               T   ++L+    + +       +KV      V E PR AS KLLR  L+  ++
Sbjct: 432 SGEVTE--EELRHFCEEKLAK-----YKVPKRFYFVEELPRNASGKLLRHELKQLVE 481

Length = 483

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 25/146 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD +AI +        +Y A   +G     I     A EIA  +  S AK +       
Sbjct: 35  EGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS---- 90

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                    +++    P    +L  +   V          ++ +  ++   P        
Sbjct: 91  --AALADTAAELAAELPAGVPLLLVVAGPVP--------GFRSYEEALAAQPDT------ 134

Query: 124 YNPVDAVV---NILFSSGTTGEPKAI 146
             P+       ++L+SSGTTG PK I
Sbjct: 135 --PIADETAGADMLYSSGTTGRPKGI 158

Length = 502

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD+ K    GY+ + GR  D +  GG      E+E   D+    ++E+A I V     G 
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439

Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 484
           E +   VV K G  +  D+  ++   A++ +L   FK    V  V E PR    K+ + +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAIL--AALKGRLAR-FKQPKRVFFVDELPRNTMGKVQKNL 494

Query: 485 LRDQIK 490
           LR+Q  
Sbjct: 495 LREQYA 500

Length = 504

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVV 433
           G++ ++ R+ D +  GG   SSVE+E V  +  + +LETA +++  P  G  E    FVV
Sbjct: 434 GHVEIKDRSKDIIISGGENISSVEVENVLYKYPK-VLETAVVAMPHPTWG--ETPCAFVV 490

Query: 434 LKKGFTSQPDKLKMIFS------KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 487
           L+KG T++ D++  + +      +  +  L        V  + E P+  + K+L+  LRD
Sbjct: 491 LEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRD 550

Query: 488 QIK 490
             K
Sbjct: 551 IAK 553

Length = 579

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW----- 180
           D V   LF+SG+TG PKA+  TQ  + +     E               P +L W     
Sbjct: 220 DTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNH 275

Query: 181 VMGPVILFSSFL-NGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVP 225
            MG    F+  L  G TL +  G PL   F + ++   +   TV G VP
Sbjct: 276 TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP 324

Length = 624

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           + GDI      GY+ +  R  D + + G      E+E V   A   +L+ AAI V     
Sbjct: 436 KTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL-AALPGVLQCAAIGVPDEKS 494

Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 482
           G E + +FVV+K G T   +++ M   +A  +     +KV   V+   E P T   K+LR
Sbjct: 495 G-EAIKVFVVVKPGETLTKEQV-MEHMRANLTG----YKVPKAVEFRDELPTTNVGKILR 548

Query: 483 RVLRDQ 488
           R LRD+
Sbjct: 549 RELRDE 554

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 119/554 (21%), Positives = 193/554 (34%), Gaps = 135/554 (24%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +AI +P   + ++ + A++  G VVV     + A E+        A+     D   
Sbjct: 81  PGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWD--- 137

Query: 64  RGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-DVGIPL------REQ-------DL 102
              +  P   ++    PL+ IV       +P +    + +P+      R          +
Sbjct: 138 ---KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTV 194

Query: 103 SWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 155
            W+  + +          HPRP               IL++SGTTG+PK    T  +   
Sbjct: 195 PWETLVDAAIGGDGSDVSHPRPTPDDVAL--------ILYTSGTTGKPKGAQLTHRNLFA 246

Query: 156 CTAEGWAHIDLKVGDVYCWPTNLG----WVMGPVILFSSF---LNGATLALYQGSPLERS 208
             A+G A           W   LG     V+  + +F ++   L   TLA+  G  L   
Sbjct: 247 NAAQGKA-----------WVPGLGDGPERVLAALPMFHAYGLTLCL-TLAVSIGGELVL- 293

Query: 209 FGKF----VQDA----GVTVLGTVPSLVKAWRNTNCLEGLDWTKIR---SFASTGETSNV 257
                   + DA      T L  VP L +         G+D + +R   S A     S V
Sbjct: 294 LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTV 353

Query: 258 DDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 317
           +  LW         ++E  G TE S          P   G   +     G V     GVP
Sbjct: 354 E--LWEKLTGGL--LVEGYGLTETS----------PIIVGNPMSDDRRPGYV-----GVP 394

Query: 318 YPD-------------DQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 356
           +PD               P  GE G        +F  Y    +    +  +  +      
Sbjct: 395 FPDTEVRIVDPEDPDETMP-DGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWF------ 447

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 416
                  R GD++     G+I +  R  + +  GG      E+E V  +    + + A +
Sbjct: 448 -------RTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHP-GVEDAAVV 499

Query: 417 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRT 475
            + P   G E +V  VVL+ G    P+ L+    + +       +KV      V E PR 
Sbjct: 500 GL-PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTR-----YKVPRRFYHVDELPRD 553

Query: 476 ASNKLLRRVLRDQI 489
              K+ RR +R+++
Sbjct: 554 QLGKVRRREVREEL 567

Length = 573

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 34/260 (13%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +G+ +AI +   +  V       LAG V V I     A ++A  L     + + T    L
Sbjct: 49  RGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERL 108

Query: 64  RGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 118
                       L + ++   P  A                   SW   L+  D  P   
Sbjct: 109 DLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA---------SWPKLLALGDADPPH- 158

Query: 119 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTN 177
              PV +   A   IL++SG+TG PK +  +   ++   A+  A  ++ +  D       
Sbjct: 159 ---PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLVAGAQSVATYLENRPDDRLLAVLP 212

Query: 178 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237
           L +  G   L ++F  GAT+ L+    L R   K ++  G+T L  VP L   W     L
Sbjct: 213 LSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALEKHGITGLAAVPPL---WAQ---L 265

Query: 238 EGLDWTK-----IRSFASTG 252
             LDW +     +R   ++G
Sbjct: 266 AQLDWPESAAPSLRYLTNSG 285

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 39/182 (21%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAK-GIFTQDFI 62
           KGD + + M  + + VI Y AI+ A  VVV +       E+A  +  S A+  I   +  
Sbjct: 60  KGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSE-- 117

Query: 63  LRGGRKFPLYSKVL---GAAPLK-AIV------LPAIGND-------VGIPLR----EQD 101
                   L  KV    G   L+  IV      LPA              PL+       
Sbjct: 118 --------LAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGV 169

Query: 102 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161
           ++WK+ L++    P P+   P     D +  + ++SGTTG PK    T   ++   A G 
Sbjct: 170 VAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSGTTGVPKGCMHTH-RTVMANAVGS 222

Query: 162 AH 163
             
Sbjct: 223 VL 224

Length = 546

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 25/131 (19%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS---VSPA- 421
           GD+      GY+ V GR DD +  GG      EIE V       +L+  A+    V    
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAV-------LLQHPAVEEAAVVGVP 345

Query: 422 ----GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTA 476
               G   +  V FVV      +            +  KL   +K       +PE PR A
Sbjct: 346 DDEWG---QRPVAFVV-----PNDDPVSVEELQAFLADKLAK-YKRPKRWYPLPELPRNA 396

Query: 477 SNKLLRRVLRD 487
           S K+ R  LR 
Sbjct: 397 SGKIDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 88/386 (22%), Positives = 142/386 (36%), Gaps = 81/386 (20%)

Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 188
           ++ +SGTTG PK  P  + S +   A   + +  + G+    P       GW    + + 
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271

Query: 189 SSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLD 241
                G+T+ L       R F      + +     T L  VP ++    +     L   D
Sbjct: 272 L----GSTVVL------RRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD 321

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFS 300
            + ++    +G  S +  +L   +   +  ++ +  G TE++ A I      P+     +
Sbjct: 322 TSSLKIIFVSG--SALSPELATRALEAFGPVLYNLYGSTEVAFATIAT----PEDL---A 372

Query: 301 TATMTAG-------LVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR- 352
            A  T G       + ILDE G   P      G VG                   ++   
Sbjct: 373 EAPGTVGRPPKGVTVKILDENGNEVP-----RGVVG------------------RIFVGN 409

Query: 353 GMPMYKGMCLRRHGDIIKR-----TVG-----GYIIVQGRADDTMNLGGIKTSSVEIERV 402
           G P  +G    R   II        VG     G + V GR DD +  GG      E+E +
Sbjct: 410 GFPF-EGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDL 468

Query: 403 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK 462
                + ++E A I V     G + L  FVV   G     D +K      ++  L   +K
Sbjct: 469 LAGHPD-VVEAAVIGVDDEEFG-QRLRAFVVKAPGAALDEDAIK----DYVRDNLAR-YK 521

Query: 463 VSL-VKVVPEFPRTASNKLLRRVLRD 487
           V   V  + E PR  + K+L+R LR+
Sbjct: 522 VPRDVVFLDELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 119/506 (23%), Positives = 181/506 (35%), Gaps = 95/506 (18%)

Query: 8    IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 67
            +AI    + + ++  LAI+ AG   V +   + A  +A  L  S  + + TQ        
Sbjct: 1184 VAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ-------- 1235

Query: 68   KFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL-SWKDFLSSVDYHPRPNYYSPVYNP 126
                 S +L         LP       I L    L SW      +  H            
Sbjct: 1236 -----SHLLER-------LPQAEGVSAIALDSLHLDSWPSQAPGLHLHG----------- 1272

Query: 127  VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE--GW--AHIDLKVGDVYCWPTNLGWVM 182
             D +  ++++SG+TG+PK +  T        AE   W  A   L   DV      + + +
Sbjct: 1273 -DNLAYVIYTSGSTGQPKGVGNTH----AALAERLQWMQATYALDDSDVLMQKAPISFDV 1327

Query: 183  GPVILFSSFLNGATLALYQGSPLE----RSFGKFVQDAGVTVLGTVPSLVKAW----RNT 234
                 F   + G  L L    P E    +   + VQ  GVT L  VP L++ +       
Sbjct: 1328 SVWECFWPLITGCRLVL--AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA 1385

Query: 235  NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQG 288
             C      T +R   S GE         L +    N +++     +L + Y      I  
Sbjct: 1386 AC------TSLRRLFSGGEA--------LPA-ELRNRVLQRLPQVQLHNRYGPTETAINV 1430

Query: 289  SLLQPQAF-GAFSTATMTAGLV---ILDECGVPYPDDQP---CVGEVGLFPLYLGASDRL 341
            +  Q QA  G  S      G V   +LD      P       C+G  GL   YLG     
Sbjct: 1431 THWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPA-- 1488

Query: 342  LNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L A+     F   P+   G  L R GD  +    G +   GR D  + L G +    EI+
Sbjct: 1489 LTAER----FVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQ 1544

Query: 401  -RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
             R+  Q     +  AA+ V     G + LV +   + G  ++ ++LK   +  +   + P
Sbjct: 1545 ARLLAQPG---VAQAAVLVREGAAGAQ-LVGYYTGEAGQEAEAERLKAALAAELPEYMVP 1600

Query: 460  LFKVSLVKVVPEFPRTASNKLLRRVL 485
               + L     + P   S KL RR L
Sbjct: 1601 AQLIRL----DQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD + + +P +V   +I+LA++  G +V ++  S +  EI  R+        FT   
Sbjct: 89  VRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTS-- 146

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
                   P   + L    +  I +P   +     +              D+ P+P    
Sbjct: 147 --------PENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYEL-IKEDFDFVPKP---- 193

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWT 149
            +    D V  I++SSGTTG  K +  T
Sbjct: 194 VIKQ--DDVAAIMYSSGTTGASKGVVLT 219

Length = 560

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD ++R   G++   GR D+ +   G + S  E+E V   A   + E  A  V     G 
Sbjct: 401 GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA-YATGLVAEAVAFGVPDPTLG- 458

Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 484
           + +V+ V    G       L        +++L P + V +L+ V    PR A+ K+ R+ 
Sbjct: 459 QAIVLVVTPPGGEELDRAALL----AECRARL-PNYMVPALIHVRQALPRNANGKIDRKA 513

Query: 485 L 485
           L
Sbjct: 514 L 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD+      GY+ +  R+ D +  GG   SS+++E +       + E A I V       
Sbjct: 415 GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLA-VGHPKVAEAAVIGVYHPKWDE 473

Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
             L+I V LK G T+  ++      K +  K+   +    V  V   P TA+ K+L+  L
Sbjct: 474 RPLLI-VQLKPGETATREE----ILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTAL 528

Query: 486 RDQIK 490
           R+Q K
Sbjct: 529 REQFK 533

Length = 542

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
           GD+  +   GYI ++ R+ D +  GG   SS+E+E V      ++LE A++   P     
Sbjct: 435 GDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVV-YTHPAVLE-ASVVARPDERWG 492

Query: 426 EVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 484
           E    FV LK G   S    L     K  + +L P + V    V    P+TA+ K+ + V
Sbjct: 493 ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL-PAYWVPKSVVFGPLPKTATGKIQKHV 551

Query: 485 LRDQIK 490
           LR + K
Sbjct: 552 LRAKAK 557

Length = 567

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 65/301 (21%), Positives = 106/301 (35%), Gaps = 65/301 (21%)

Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVY-CW-PTNLGWVMGP 184
           D +  ++++SGTTG PK +  T   ++   A      I L  GD    + P  L  V   
Sbjct: 88  DDLATLIYTSGTTGNPKGVMLTH-RNLLAQAAALLEVIPLSPGDRVLSFLP--LAHVFEQ 144

Query: 185 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
            +  +    +GA +  +  SP   +  + +++   TV   VP +              W 
Sbjct: 145 RLGEYLPLSSGARVN-FAESP--ETLLEDLREVRPTVFFAVPRV--------------WE 187

Query: 244 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 303
           KI +       + V     L  K +  A+    GG  L  A   G+ L P+    F    
Sbjct: 188 KIYAGIE----AKVAAAGPLKRKLFRWAL----GGGRLRFAVSGGAPLPPEVLEFFR--- 236

Query: 304 MTAGLVILD-----ECGVPY---PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 355
              G+ IL+     E              +G VG      G   R+  A+  E+  RG  
Sbjct: 237 -ALGIPILEGYGLTETSGVATVNRPGDIRIGTVG--KPLPGVEVRI--AEDGEILVRGPN 291

Query: 356 MYKGMCLR---------------RHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSVEI 399
           + KG   +                 GDI +    G++++  R  D +   GG   +   I
Sbjct: 292 VMKGY-YKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPI 350

Query: 400 E 400
           E
Sbjct: 351 E 351

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGW----- 180
           +D    I+F+SG+TG+PKA+  T   +   +A G A ++ L   D   W   L       
Sbjct: 76  LDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDD--NW---LLSLPLFH 129

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 225
           V G  I+  S L G  L L      E    + +++ GVT +  VP
Sbjct: 130 VSGLAIVMRSLLAGGALVLPDKFDAEAI-AEALENHGVTHISLVP 173

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.97
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.96
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.81
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.8
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.66
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.26
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.04
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.56
PLN02249	597	indole-3-acetic acid-amido synthetase	98.22
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.11
PLN02247	606	indole-3-acetic acid-amido synthetase	97.98
PLN02620	612	indole-3-acetic acid-amido synthetase	97.95
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	81.53

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-75  Score=575.25  Aligned_cols=464  Identities=27%  Similarity=0.288  Sum_probs=393.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++||++++++.++||+++|++..++||.+.+.++..++++++++.++++....      +...........
T Consensus        69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~  142 (537)
T KOG1176|consen   69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLAL  142 (537)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCC
Confidence            68899999999999999999999999999999999999999999999999999999998543      333333433344


Q ss_pred             ceEEecccCCCCCCCCCcCCCC-HHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ..+++................+ +.++......    ..  ....+.+|++.++|||||||.||||++||+++.......
T Consensus       143 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~  216 (537)
T KOG1176|consen  143 KIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP----DG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSI  216 (537)
T ss_pred             ceEEEecccCccccccccccccchhhccccCCC----cc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHh
Confidence            5555543312111111112222 3333332221    11  456678999999999999999999999999999998877


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      .....+...++.++.+|++|.+|+..++.+++.|++.++....++++.+++.|++|++|++.++|+.+..|++.......
T Consensus       217 ~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~  296 (537)
T KOG1176|consen  217 KIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKY  296 (537)
T ss_pred             hhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcc
Confidence            77777888999999999999999999777666666666666678999999999999999999999999999999877788


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      ++++++.+.++|+++++++.+.++++++...+.+.||+||+++....+........+++|.++++++.++.+++|+.+++
T Consensus       297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~  376 (537)
T KOG1176|consen  297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGP  376 (537)
T ss_pred             cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCC
Confidence            99999999999999999999999999987889999999999976666655444678999999999999999999999999


Q ss_pred             CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854          321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI  399 (499)
Q Consensus       321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i  399 (499)
                      ++.  ||||+ ++..+.+  +++|++.+...+      ++++||||||+|++|+||+|||.+|.||+||.+|++|+|.||
T Consensus       377 ~~~--GEI~vrg~~imkG--Y~~NpeaT~~~~------~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~Ei  446 (537)
T KOG1176|consen  377 NQT--GEICVRGPQVMKG--YLKNPEATKEAF------DDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEI  446 (537)
T ss_pred             CCc--eEEEEECcccchh--hcCChHHHHhhc------ccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHH
Confidence            995  99999 7777764  444555444444      455999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      |++|. .||.|.|++|++.+|+.+| +.++|+||.+++...++++++++++    ++|+.|+.|..++|+++||+|++||
T Consensus       447 E~vL~-~hP~V~eaaVvgipDe~~G-e~p~A~VV~k~g~~lte~di~~~v~----k~l~~y~~~~~V~Fvd~lPKs~~GK  520 (537)
T KOG1176|consen  447 EAVLL-THPDVLEAAVVGIPDEVWG-ETPAAFVVLKKGSTLTEKDIIEYVR----KKLPAYKLPGGVVFVDELPKTPNGK  520 (537)
T ss_pred             HHHHH-hCCCccEEEEEcccccccC-CcceEEEEecCCCcCCHHHHHHHHH----hhCChhhccCeEEEeccCCCCCcch
Confidence            99997 9999999999999999999 9999999999988889888888754    6788899999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 010854          480 LLRRVLRDQIKHEL  493 (499)
Q Consensus       480 v~r~~l~~~~~~~~  493 (499)
                      |+|+.||+.+.+..
T Consensus       521 i~R~~lr~~~~~~~  534 (537)
T KOG1176|consen  521 ILRRKLRDIAKKLG  534 (537)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998754

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-74  Score=528.99  Aligned_cols=468  Identities=21%  Similarity=0.233  Sum_probs=397.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc---
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---   78 (499)
                      |++||||+++.||+.+|+.++|||+++|.+.+++||.+..++++..|++.+++++|+.+.+-.. .+-..+.++.++   
T Consensus        99 L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~-ny~~~l~~icPEv~~  177 (596)
T KOG1177|consen   99 LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQ-NYYETLLEICPEVMR  177 (596)
T ss_pred             CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhc-hHHHHHHHhhHHhhc
Confidence            7899999999999999999999999999999999999999999999999999999998865211 001111112111   


Q ss_pred             ----------CCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCC-CCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010854           79 ----------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN-YYSPVYNPVDAVVNILFSSGTTGEPKAIP  147 (499)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~  147 (499)
                                .+....++..+++.    .-++.+.++|+++.++..+... ........+||++.|.|||||||.|||+.
T Consensus       178 ~~~G~lkS~~lp~lthvi~~~ed~----~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgat  253 (596)
T KOG1177|consen  178 GDPGQLKSELLPELTHVILADEDH----PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGAT  253 (596)
T ss_pred             CCCccccccccccceEEEecCCCC----cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCccee
Confidence                      23444444444332    3578899999998876521111 12234567899999999999999999999


Q ss_pred             ecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchH
Q 010854          148 WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS  226 (499)
Q Consensus       148 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~  226 (499)
                      +||.+++++.......+++...++++...|++|.+|.+. ++.++..|++++++.+.+++...+++|.+++||.++++|+
T Consensus       254 LsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPt  333 (596)
T KOG1177|consen  254 LSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPT  333 (596)
T ss_pred             eehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChH
Confidence            999999999999888999999999999999999999765 9999999999999988999999999999999999999999


Q ss_pred             HHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC--CccccccccCC
Q 010854          227 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP--QAFGAFSTATM  304 (499)
Q Consensus       227 ~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~--~~~~~~g~~~~  304 (499)
                      |+..|++...+...+++++|.++.+|+++++++.+.+.....-..+...||+||++...+.....++  ....++|+.++
T Consensus       334 M~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~  413 (596)
T KOG1177|consen  334 MFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMD  413 (596)
T ss_pred             HHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccc
Confidence            9999999999999999999999999999999999999877655668899999999977666555433  45689999999


Q ss_pred             CceEEEECCCCCCCCCCCCcceeeEe-cc----cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEE
Q 010854          305 TAGLVILDECGVPYPDDQPCVGEVGL-FP----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  379 (499)
Q Consensus       305 ~~~~~i~d~~g~~~~~g~~~~Gei~v-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~  379 (499)
                      +.+..|+|..|..++.+.+  ||+++ +.    +||+..+.            ....+..++||+|||++.+|++|++++
T Consensus       414 h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tMl~Ywg~~~k------------T~eti~~drW~~TGDi~~m~enG~i~i  479 (596)
T KOG1177|consen  414 HYEAAIVDKDGSEVPLGTK--GELLIRGYSTMLGYWGEEEK------------TKETIGNDRWYDTGDIAVMDENGTIEI  479 (596)
T ss_pred             ccccccccCCCCccccCCC--ceEEEEechhheeecCCccc------------chhhcccccceecCceEEEcCCCcEEE
Confidence            9999999999999999997  99999 43    34442211            133456789999999999999999999


Q ss_pred             ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC--CHHHHHHHHHHHHHhhc
Q 010854          380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--QPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~l  457 (499)
                      +||.+|+|+.+|++|+|.|||+.|. .||.|.++.|++++|+..| +.++|+|-++.+...  +.++|+.+    ++.+|
T Consensus       480 VGRskdmI~rGGENVyP~ElE~fL~-~hp~V~~a~VVGV~D~R~G-E~VCA~vRLqe~~e~~~t~E~lKa~----Ck~kl  553 (596)
T KOG1177|consen  480 VGRSKDMIIRGGENVYPTELEDFLN-KHPLVKEAHVVGVPDERLG-EEVCACVRLQEGAEGKTTAETLKAM----CKGKL  553 (596)
T ss_pred             EEcccCeEEeCCcccChHHHHHHHh-hCCCeeeEEEEccCCCccc-ceEEEEEEeeccccccccHHHHHHH----Hhccc
Confidence            9999999999999999999999997 9999999999999999999 999999999886542  55555554    66789


Q ss_pred             CCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          458 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       458 ~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      +.|++|++|++++++|+|.+|||+|.++|++++.+++
T Consensus       554 aHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~  590 (596)
T KOG1177|consen  554 AHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLG  590 (596)
T ss_pred             ccccCCcEEEEeccCcccccccchhHHHHHHHHhhcc
Confidence            9999999999999999999999999999999998775

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.5e-72  Score=550.41  Aligned_cols=454  Identities=27%  Similarity=0.403  Sum_probs=383.0

Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCce
Q 010854            4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA   83 (499)
Q Consensus         4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (499)
                      +||||+|+||+.++.++++|||+++|++++|+.+..+++.++..++++++|++|+.+...+..+..+........... .
T Consensus        64 kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~  142 (528)
T COG0365          64 KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-V  142 (528)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-e
Confidence            899999999999999999999999999999999999999999999999999999988776655554444443333333 2


Q ss_pred             EEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc-e
Q 010854           84 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-A  162 (499)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~-~  162 (499)
                      ++...          .+ ..|.++......     .......+.+|+++++|||||||.||||+++|..+........ .
T Consensus       143 iv~~r----------~~-~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~  206 (528)
T COG0365         143 VVVPR----------LG-LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF  206 (528)
T ss_pred             EEecc----------cc-ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHH
Confidence            22211          11 677777765432     2233347889999999999999999999999997766665444 4


Q ss_pred             eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCC--hhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          163 HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       163 ~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      .+.+.++|++.+..++.|.+|... +++++.+|+++++.+....  ++.+++.|+++++|.+++.|+.++.|++....++
T Consensus       207 ~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~  286 (528)
T COG0365         207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEP  286 (528)
T ss_pred             hhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccc
Confidence            577889999999999999999998 9999999999999875543  8899999999999999999999999999987677


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      .++++||.+.+.||+++++..+++.+.+ ++.+.+.||+||+++++....+  +...++.|.|+||+++.++|++|++++
T Consensus       287 ~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~  363 (528)
T COG0365         287 YDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVP  363 (528)
T ss_pred             ccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCC
Confidence            8999999999999999999999999887 6999999999999966655544  444555599999999999998899999


Q ss_pred             CCCCcceeeEecccccccccc-cccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGLFPLYLGASDR-LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      +++   |+|++....++.... ..+++.....|.+      . ||.|||.+++|+||+++|.||.||+||+.|++|.|.|
T Consensus       364 ~~~---G~Lvi~~~~p~~~~~~w~d~er~~~~y~~------~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~E  433 (528)
T COG0365         364 PGV---GELVVRLPWPGMALTYWNDPERYKEAYFG------R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLE  433 (528)
T ss_pred             CCc---eEEEEeCCCchhhhhhhCCHHHHHHHHhh------c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHH
Confidence            998   999994332222111 1122222222221      1 8899999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. +||.|.|++|++.+|+..| +.+++||+++++...+  +|.+.+++++++.+.++..|++|.|+++||+|.||
T Consensus       434 vE~~l~-~hP~VaEaAvVg~pd~~kg-~~v~afVvL~~g~~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sG  509 (528)
T COG0365         434 IESVLL-AHPAVAEAAVVGVPDPGKG-QIVLAFVVLAAGVEPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASG  509 (528)
T ss_pred             HHHHHH-hCcceeeeEEEeccCCCCC-cEEEEEEEecCCCChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcc
Confidence            999997 9999999999999999888 8899999999998766  99999999998888889999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 010854          479 KLLRRVLRDQIKH  491 (499)
Q Consensus       479 Kv~r~~l~~~~~~  491 (499)
                      ||.|+.||+.+.+
T Consensus       510 KI~R~~lr~~~~~  522 (528)
T COG0365         510 KIQRRLLRKILHK  522 (528)
T ss_pred             cHHHHHHHHHHhh
Confidence            9999999998884

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=9.2e-71  Score=576.28  Aligned_cols=497  Identities=67%  Similarity=1.114  Sum_probs=403.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++||++++++++|||+++|++++|+++.++++++..++++++++++|+++.+.+..+..+.+..+......
T Consensus       230 v~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~  309 (728)
T PLN03052        230 FEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAP  309 (728)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999988665443444444443333333


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+++................+|++++.............+.....+++++|+|||||||.||||+++|.+++..+....
T Consensus       310 ~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~  389 (728)
T PLN03052        310 KAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAW  389 (728)
T ss_pred             cEEEEeCCCCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHH
Confidence            34444322111111111234567777654321000111122223568999999999999999999999998877665555


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++++|++++..+++|.++...++.+++.|+++++.++......+++.++++++|++.++|++++.|.+.....+.+
T Consensus       390 ~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d  469 (728)
T PLN03052        390 AHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD  469 (728)
T ss_pred             HhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC
Confidence            55788999999999999999998778899999999999976556678999999999999999999999998876556778


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD  321 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g  321 (499)
                      +++||.+.++||+++++...++...+....+.+.||+||+++.+...........+++|.|.+|++++|+|++|++++.|
T Consensus       470 lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g  549 (728)
T PLN03052        470 WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDD  549 (728)
T ss_pred             hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCC
Confidence            99999999999999999888887766556799999999998755444333444567899999999999999999999988


Q ss_pred             CCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHH
Q 010854          322 QPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER  401 (499)
Q Consensus       322 ~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~  401 (499)
                      +.++|||++.+.+++....+.+......||.+.+..++++||+|||++++|++|+++++||.||+||++|.+|+|.|||+
T Consensus       550 ~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~  629 (728)
T PLN03052        550 APCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER  629 (728)
T ss_pred             CCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHH
Confidence            64469999977666654444555555667776776777789999999999999999999999999999999999999999


Q ss_pred             HHhhcCccceeeeEEEeCCCCCCceEEEEEEEec--CCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       402 ~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      ++...||+|.+++|++++++..|.+++++||++.  ++...+.++|++++++++.++|++++.|..|+++++||+|++||
T Consensus       630 ~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGK  709 (728)
T PLN03052        630 VCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNK  709 (728)
T ss_pred             HHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchH
Confidence            9954799999999999998766558899999987  55556678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCC
Q 010854          480 LLRRVLRDQIKHELSVRSRI  499 (499)
Q Consensus       480 v~r~~l~~~~~~~~~~~~~~  499 (499)
                      ++|+.|++.+.+... +|||
T Consensus       710 i~Rr~Lr~~~~~~~~-~~~~  728 (728)
T PLN03052        710 VMRRVLRQQLAQELS-RSKL  728 (728)
T ss_pred             HHHHHHHHHHHhhhh-ccCC
Confidence            999999999988776 7775

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.3e-69  Score=545.47  Aligned_cols=488  Identities=71%  Similarity=1.171  Sum_probs=371.1

Q ss_pred             cCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCceEEecccCC
Q 010854           12 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN   91 (499)
Q Consensus        12 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (499)
                      +||++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.........+.+..+........+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            68999999999999999999999999999999999999999999999764211101112222222212222233221111


Q ss_pred             CCCCCCCcCCCCHHHHhcccCCC--CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcceeccCcCC
Q 010854           92 DVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG  169 (499)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~~~~~~~  169 (499)
                      ...........++.++.......  .......+....++++++|+|||||||.||||+++|+++...+......++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence            10000011234566665321110  0001111122356899999999999999999999999987766555555678899


Q ss_pred             cEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC--CCcccccceeE
Q 010854          170 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS  247 (499)
Q Consensus       170 ~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~l~~  247 (499)
                      |++++.+|++|.+++..++.+++.|+++++.+..+++..+++.|+++++|++.++|+++..|++...  ....++++||.
T Consensus       161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~  240 (499)
T PLN03051        161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV  240 (499)
T ss_pred             CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence            9999999999999987788899999999998755667899999999999999999999999987643  34557889999


Q ss_pred             EEeecCCCChhhHHHHHhhc-ccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcce
Q 010854          248 FASTGETSNVDDDLWLSSKA-WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG  326 (499)
Q Consensus       248 i~~~G~~l~~~~~~~~~~~~-~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~G  326 (499)
                      ++++|++++++..+++++.. .+..+++.||+||++..+...........+++|.|.++++++|+|++|++++.|+.++|
T Consensus       241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G  320 (499)
T PLN03051        241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG  320 (499)
T ss_pred             EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence            99999999998888776522 23779999999998654333222223345789999999999999999999998853369


Q ss_pred             eeEecccccccccccccccccchhhcCCCCC--CCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHh
Q 010854          327 EVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD  404 (499)
Q Consensus       327 ei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~  404 (499)
                      ||++...+.+....|.+.+.+..++.+.+..  ++..||+|||+|++|+||+|+++||.||+||++|++|+|.|||++|.
T Consensus       321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~  400 (499)
T PLN03051        321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD  400 (499)
T ss_pred             EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence            9999433332111222333333344444333  45668999999999999999999999999999999999999999996


Q ss_pred             hcCccceeeeEEEeCCCCCCceEEEEEE---EecCCC-CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHH
Q 010854          405 QADESILETAAISVSPAGGGPEVLVIFV---VLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL  480 (499)
Q Consensus       405 ~~~~~v~~~~v~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv  480 (499)
                      +.||+|.+++|++++++..+.+.++++|   +++++. ..+.+++++++++++.++|++|++|..|+++++||+|++||+
T Consensus       401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi  480 (499)
T PLN03051        401 RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL  480 (499)
T ss_pred             hcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccH
Confidence            3499999999999999887746788998   777664 456788999999999889998888878999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCC
Q 010854          481 LRRVLRDQIKHELSVRSRI  499 (499)
Q Consensus       481 ~r~~l~~~~~~~~~~~~~~  499 (499)
                      +|++|++.+.++++.+|||
T Consensus       481 ~r~~L~~~~~~~~~~~~~~  499 (499)
T PLN03051        481 LRRVLRDQLKKELSGRSKL  499 (499)
T ss_pred             HHHHHHHHHHHhhccccCC
Confidence            9999999999999999986

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.5e-67  Score=534.22  Aligned_cols=457  Identities=25%  Similarity=0.266  Sum_probs=373.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      |++||+|+|+++|++++++++|||+++|++++|+||.++.+++.+++++++++.+++++.+.      ..........+.
T Consensus        60 v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~  133 (534)
T COG0318          60 VKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPV  133 (534)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCc
Confidence            67999999999999999999999999999999999999999999999999999999987521      122222222222


Q ss_pred             ceEEecccCCCCCCCCCcCC-CCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 KAIVLPAIGNDVGIPLREQD-LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ...+........      .. .++.++......    ........+++|+++++|||||||.||||++||+++..+....
T Consensus       134 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~  203 (534)
T COG0318         134 VLVVLLVGDADD------RLPITLEALAAEGPG----PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGI  203 (534)
T ss_pred             ceEEEecccccc------cccccHHHHhhccCC----cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHH
Confidence            222222111110      00 355665333221    1111112678999999999999999999999999999998888


Q ss_pred             ceecc--CcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          161 WAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       161 ~~~~~--~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      ...+.  +++.|++++++|++|.+|+.. ++..++.|+++++.++ .++++.++..+.++++|++.++|+++..|+....
T Consensus       204 ~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~  283 (534)
T COG0318         204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE  283 (534)
T ss_pred             HHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCc
Confidence            88887  899999999999999999997 6666999999998874 5788999999999999999999999999999988


Q ss_pred             CCcccccc-eeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCC
Q 010854          237 LEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDEC  314 (499)
Q Consensus       237 ~~~~~l~~-l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~  314 (499)
                      ....++++ +|.+++||+++++++.+.+++++....+++.||+||++..+....... ....+++|.|.|+++++|+|++
T Consensus       284 ~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~  363 (534)
T COG0318         284 KDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPD  363 (534)
T ss_pred             cCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCC
Confidence            77766666 999999999999999999999986568999999999997666665555 2356777999999999999955


Q ss_pred             CC-CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          315 GV-PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       315 g~-~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      +. +++ |+  +|||++ ++..+.+  ++.+++.+...|.      +++||+|||+|++|++|+++|+||.||+|+++|+
T Consensus       364 ~~~~~p-g~--vGei~irgp~v~~G--Y~~~pe~t~~~f~------~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~  432 (534)
T COG0318         364 GGEVLP-GE--VGEIWVRGPNVMKG--YWNRPEATAEAFD------EDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE  432 (534)
T ss_pred             CCccCC-CC--ceEEEEECchhhhh--hcCChHHHHHhhc------cCCeeeecceEEEcCCccEEEEeccceEEEeCCe
Confidence            54 555 76  699999 6666654  2223333333332      2689999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      +|+|.|||+++. .||.|.+++|++++++.+| +.++++++++++.  ..+.+++.++++    +.++.|+.|+++++++
T Consensus       433 ni~p~eiE~~l~-~~~~V~~aavvgvpd~~~G-e~~~a~v~~~~~~~~~~~~~~i~~~~~----~~l~~~~~P~~v~~v~  506 (534)
T COG0318         433 NIYPEEIEAVLA-EHPAVAEAAVVGVPDERWG-ERVVAVVVLKPGGDAELTAEELRAFLR----KRLALYKVPRIVVFVD  506 (534)
T ss_pred             EECHHHHHHHHH-hCCCcceEEEEeCCCCccC-ceEEEEEEEcCCCCCCCCHHHHHHHHH----hhhhcccCCeEEEEeC
Confidence            999999999996 9999999999999999999 9999999998763  335666666644    5889999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHh
Q 010854          471 EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      +||+|++||++|+.|++.+.+
T Consensus       507 ~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         507 ELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CCCCCCchhhhHHHHHHHHHh
Confidence            999999999999999999987

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-66  Score=536.27  Aligned_cols=479  Identities=20%  Similarity=0.272  Sum_probs=368.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccc---hhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL---YSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~   78 (499)
                      |++||+|++++||++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..+.   +......
T Consensus       114 v~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  193 (647)
T PTZ00237        114 ISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIEL  193 (647)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999998643322211111   1112111


Q ss_pred             C---CCceEEecccCC--CC------CCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010854           79 A---PLKAIVLPAIGN--DV------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP  147 (499)
Q Consensus        79 ~---~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~  147 (499)
                      .   ....+++.....  ..      .....+....|++++..................++++++|+|||||||.||||+
T Consensus       194 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~  273 (647)
T PTZ00237        194 STFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVV  273 (647)
T ss_pred             ccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEE
Confidence            1   112222211110  00      001112335577665432110011112223456799999999999999999999


Q ss_pred             ecchhhHHHhh-hcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCC-C----hhHHHHHHHHhCCeEE
Q 010854          148 WTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP-L----ERSFGKFVQDAGVTVL  221 (499)
Q Consensus       148 ~s~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~-~----~~~~~~~i~~~~~t~l  221 (499)
                      ++|.+.+.... .....+....++++++..|++|..+...++.+++.|+++++.+... .    +..+++.|+++++|++
T Consensus       274 ~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~  353 (647)
T PTZ00237        274 RSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHT  353 (647)
T ss_pred             EcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEE
Confidence            99998443333 2233456777899999999999987767889999999999876421 1    5789999999999999


Q ss_pred             ecchHHHHHHHccCC-----CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcc
Q 010854          222 GTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF  296 (499)
Q Consensus       222 ~~~P~~l~~l~~~~~-----~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~  296 (499)
                      .++|++++.|++...     ....++++||.++++|+++++++.+++.+.+ ++.+++.||+||++..+...........
T Consensus       354 ~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~  432 (647)
T PTZ00237        354 LTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYGHINIPY  432 (647)
T ss_pred             EeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCCCCCCCC
Confidence            999999999987542     2345789999999999999999999998776 6889999999999865443332222334


Q ss_pred             ccccccCCCceEEEECCCCCCCCCCCCcceeeEec-c---cccccccccccccccchhhcCCCCCCCccccccCceeEee
Q 010854          297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-P---LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT  372 (499)
Q Consensus       297 ~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~  372 (499)
                      +++|.|+|+++++|+|++|++++.|+  .|||++. +   ..+.+  ++.+++.+..+|.     +.++||+|||+|++|
T Consensus       433 ~s~G~p~~g~~~~i~d~~g~~~~~ge--~GEl~v~~p~~p~~~~g--y~~~~~~~~~~f~-----~~~g~~~TGDlg~~d  503 (647)
T PTZ00237        433 NATGVPSIFIKPSILSEDGKELNVNE--IGEVAFKLPMPPSFATT--FYKNDEKFKQLFS-----KFPGYYNSGDLGFKD  503 (647)
T ss_pred             CCCccCcCCceEEEECCCCCCCCCCC--ceEEEEeccCCchhhCc--eeCCHHHHHHHHh-----CCCCEEECCcEEEEC
Confidence            78999999999999999999999998  5999994 3   22222  2333333333442     235799999999999


Q ss_pred             cCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCC---CCCHHHHHHHH
Q 010854          373 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF---TSQPDKLKMIF  449 (499)
Q Consensus       373 ~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~  449 (499)
                      ++|+++++||.||+||++|++|+|.|||++|. .||.|.+++|++++++..+ +.++++|++.++.   ..+.+++.+.+
T Consensus       504 ~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavvg~~~~~~g-~~~~a~Vv~~~~~~~~~~~~~~l~~~i  581 (647)
T PTZ00237        504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSIGIYDPDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEI  581 (647)
T ss_pred             CCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEEeeEcCCCC-CEEEEEEEeccCccccCCCHHHHHHHH
Confidence            99999999999999999999999999999997 8999999999999999888 8999999988532   33556788888


Q ss_pred             HHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          450 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       450 ~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++.++++|++|+.|+.|+++++||+|++||++|+.|++++.++
T Consensus       582 ~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  624 (647)
T PTZ00237        582 NNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS  624 (647)
T ss_pred             HHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC
Confidence            8889999999999999999999999999999999999998654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.4e-64  Score=526.80  Aligned_cols=476  Identities=23%  Similarity=0.317  Sum_probs=370.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchh---hhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---KVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~---~~~~~   78 (499)
                      +++||+|++++||++++++++|||+++|++++|+++.++++++..++++++++++|+++...+..+......   .....
T Consensus       142 v~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~  221 (666)
T PLN02654        142 VKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDE  221 (666)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999999999999999876543322211111   11111


Q ss_pred             C----CCceEEecccCC------CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010854           79 A----PLKAIVLPAIGN------DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW  148 (499)
Q Consensus        79 ~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~  148 (499)
                      .    .....++.....      ...+. ......|+++.....     ..........+|+++++|||||||.||||++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~  295 (666)
T PLN02654        222 SAKNGVSVGICLTYENQLAMKREDTKWQ-EGRDVWWQDVVPNYP-----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH  295 (666)
T ss_pred             ccccCCCccEEEEecccccccccccccc-cCCcccHHHHhhcCC-----CCCCceecCCCCceEEEecCCCCCCCceEEe
Confidence            0    000111110000      00000 011233555543211     1112233567999999999999999999999


Q ss_pred             cchhhHHH-hhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEec
Q 010854          149 TQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGT  223 (499)
Q Consensus       149 s~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~  223 (499)
                      +|.+++.. .......++++++|++++..|++|..+... ++.+++.|+++++.++.   .++..+++.|+++++|++++
T Consensus       296 sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~  375 (666)
T PLN02654        296 TTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYT  375 (666)
T ss_pred             cccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEe
Confidence            99987644 344455678999999999999999999765 88999999999998642   35789999999999999999


Q ss_pred             chHHHHHHHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhccc--CceeccccccceeeeeecCCCC-CCCcccc
Q 010854          224 VPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGA  298 (499)
Q Consensus       224 ~P~~l~~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~  298 (499)
                      +|++++.|++...  ..+.++++||.++++|+++++++.+++.+.+..  +.+.+.||+||+++........ .....++
T Consensus       376 ~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs  455 (666)
T PLN02654        376 APTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS  455 (666)
T ss_pred             CHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCc
Confidence            9999999988653  234678899999999999999999999887743  6799999999998755543322 2346688


Q ss_pred             ccccCCCceEEEECCCCCCCCCCCCcceeeEecccccccc-cccccccccchhhcCCCCCCCccccccCceeEeecCceE
Q 010854          299 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGAS-DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  377 (499)
Q Consensus       299 ~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l  377 (499)
                      +|.|++|++++|+|++|++++.++  +||+++..+..+.. .++.+++.+...|-    ...++||+|||+|++|++|++
T Consensus       456 ~G~p~~g~~v~i~d~~g~~~~~~~--~Gel~v~~~~p~~~~gy~~~~~~~~~~~~----~~~~g~~~TGD~~~~d~dG~l  529 (666)
T PLN02654        456 ATFPFFGVQPVIVDEKGKEIEGEC--SGYLCVKKSWPGAFRTLYGDHERYETTYF----KPFAGYYFSGDGCSRDKDGYY  529 (666)
T ss_pred             cCCCCCCceEEEECCCCCCCCCCC--ceEEEEcCCCchhhhhhcCChHHHHHhhh----hcCCCEEEeCceEEECCCCcE
Confidence            999999999999999999998877  59999943212111 12222222221111    123579999999999999999


Q ss_pred             EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc
Q 010854          378 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       378 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  457 (499)
                      +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++++|+++++...+ +++.+.++++++++|
T Consensus       530 ~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~~a~Vvl~~~~~~~-~~l~~~l~~~~~~~L  606 (666)
T PLN02654        530 WLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEHEVKG-QGIYAFVTLVEGVPYS-EELRKSLILTVRNQI  606 (666)
T ss_pred             EEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEcCCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHHhC
Confidence            999999999999999999999999997 9999999999999998888 9999999999875543 567778888899999


Q ss_pred             CCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          458 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       458 ~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +.|+.|+.|+++++||+|++||++|+.|++.+.++
T Consensus       607 ~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~  641 (666)
T PLN02654        607 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ  641 (666)
T ss_pred             CCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence            99999999999999999999999999999998764

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.5e-63  Score=517.91  Aligned_cols=475  Identities=23%  Similarity=0.354  Sum_probs=366.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccch---hhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY---SKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...+..+..+..   ......
T Consensus       105 v~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  184 (628)
T TIGR02316       105 VGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAE  184 (628)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999987543222211111   111111


Q ss_pred             ---CCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           79 ---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                         .....+++........ ........+.++......    .........++++++|+|||||||.||||+++|.++..
T Consensus       185 ~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~  259 (628)
T TIGR02316       185 AQHPPPHVLLVDRGLAPMR-LIPGRDVDYAALRTQHED----AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAV  259 (628)
T ss_pred             cCCCCCEEEEEeCCCCCcC-cccCccccHHHHhhcccc----CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHH
Confidence               1122233321111100 001123456665443211    11112234679999999999999999999999999764


Q ss_pred             H-hhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC---CCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 C-TAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~-~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      . .......++++++|++++..|++|..++.. ++.+++.|+++++.++   ..++..+++.|+++++|+++++|++++.
T Consensus       260 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  339 (628)
T TIGR02316       260 ALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRV  339 (628)
T ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHH
Confidence            4 334445578899999999999999999755 8899999999998864   2357889999999999999999999999


Q ss_pred             HHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCC
Q 010854          231 WRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMT  305 (499)
Q Consensus       231 l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~  305 (499)
                      |.+...  ....++++||.++++|+++++++.+++...+ +..+++.||+||++..++.....   .....+++|.|+|+
T Consensus       340 l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g  418 (628)
T TIGR02316       340 LKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYG  418 (628)
T ss_pred             HHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCC
Confidence            887643  2456789999999999999999999888766 67899999999998544332221   12345788999999


Q ss_pred             ceEEEECC-CCCCCCCCCCcceeeEe-ccc---ccccccccccccccch-hhcCCCCCCCccccccCceeEeecCceEEE
Q 010854          306 AGLVILDE-CGVPYPDDQPCVGEVGL-FPL---YLGASDRLLNADHEEV-YFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  379 (499)
Q Consensus       306 ~~~~i~d~-~g~~~~~g~~~~Gei~v-~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~  379 (499)
                      ++++|+|+ +|++++.|+  .|||++ ++.   ++.+  ++.+++.... ++.    ..+++||+|||+|++|+||++++
T Consensus       419 ~~v~i~d~~~g~~~~~g~--~Gel~v~gp~~~g~~~~--~~~~~~~~~~~~~~----~~~~~~~~TGD~g~~d~dG~l~i  490 (628)
T TIGR02316       419 YHLRVLDEATGRPCGPNE--KGVLTVVPPLPPGCLST--VWGDDARFLKTYWS----HFKRPLYSSFDWGIRDEDGYTFI  490 (628)
T ss_pred             ceEEEEECCCCCCCCCCC--cEEEEEecCCCcccccc--ccCChHHHHHhhhh----cCCCCEEECCceEEEcCCCcEEE
Confidence            99999996 899999998  599999 442   2222  1112211111 111    11357999999999999999999


Q ss_pred             ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC----CHHHHHHHHHHHHHh
Q 010854          380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMIFSKAIQS  455 (499)
Q Consensus       380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~~~~  455 (499)
                      +||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++++|++.++...    +.+.+.+.+++++.+
T Consensus       491 ~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~  568 (628)
T TIGR02316       491 LGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAGDAHDPHAVETGMMDCVVR  568 (628)
T ss_pred             EEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEEEEEEEEcCCcccccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999997 8999999999999998888 899999998865432    234567778888899


Q ss_pred             hcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          456 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       456 ~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +|+.|+.|..|+++++||+|++||++|+.|++.+.+.
T Consensus       569 ~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~  605 (628)
T TIGR02316       569 QLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR  605 (628)
T ss_pred             hcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999987653

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-63  Score=513.04  Aligned_cols=449  Identities=21%  Similarity=0.213  Sum_probs=363.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....      .+.........
T Consensus        96 i~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~  169 (549)
T PRK07788         96 VRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGR  169 (549)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhcccccc
Confidence            679999999999999999999999999999999999999999999999999999999875421      11111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...+........  .......+++++......       .+.....++.++++|||||||.||+|+++|+++...+....
T Consensus       170 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  240 (549)
T PRK07788        170 LRAWGGNPDDDE--PSGSTDETLDDLIAGSST-------APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLL  240 (549)
T ss_pred             ceEEEEecCccc--cCCcCcccHHHHhcCCCC-------CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHH
Confidence            111111111110  112345567777654322       11122356789999999999999999999999998888777


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC--Cc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~  239 (499)
                      ..+++..+++++...|++|.+++..++.++..|+++++.. .++++.+++.++++++|++.++|+++..+++....  ..
T Consensus       241 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  319 (549)
T PRK07788        241 SRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK  319 (549)
T ss_pred             hhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC
Confidence            7788899999999999999999988888999999998885 56889999999999999999999999999887654  55


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      .+++++|.+++||+++++++.+++.+.+ +..+++.||+||++..............+++|.|+++++++|+|+++++++
T Consensus       320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~  398 (549)
T PRK07788        320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVP  398 (549)
T ss_pred             CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCC
Confidence            6688999999999999999999998776 678999999999886554433322345678999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  .||+++ ++..+.+            |+.++.....++||+|||++++|++|++++.||.||+||++|++|+|.+
T Consensus       399 ~g~--~Gel~v~g~~~~~g------------Y~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~e  464 (549)
T PRK07788        399 RGV--VGRIFVGNGFPFEG------------YTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAE  464 (549)
T ss_pred             CCC--eEEEEEeCCCcccc------------ccCCCcccccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHH
Confidence            998  599999 4433332            2211111223579999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. .+|+|.+++|++.+++..+ +.++++|++.++...+.+++.++    ++++|+.|+.|.+++++++||+|++|
T Consensus       465 IE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~P~~i~~v~~lP~t~~G  538 (549)
T PRK07788        465 VEDLLA-GHPDVVEAAVIGVDDEEFG-QRLRAFVVKAPGAALDEDAIKDY----VRDNLARYKVPRDVVFLDELPRNPTG  538 (549)
T ss_pred             HHHHHH-hCCCeeEEEEECCcCcccc-cEEEEEEEeCCCCCCCHHHHHHH----HHHhhhcCCCCcEEEEeCCCCCCCCc
Confidence            999996 8999999999999988888 89999999887665666555555    55688899999999999999999999


Q ss_pred             HHHHHHHHH
Q 010854          479 KLLRRVLRD  487 (499)
Q Consensus       479 Kv~r~~l~~  487 (499)
                      |++|++|++
T Consensus       539 Ki~r~~L~~  547 (549)
T PRK07788        539 KVLKRELRE  547 (549)
T ss_pred             CEeHHHhhc
Confidence            999999975

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-63  Score=486.07  Aligned_cols=479  Identities=32%  Similarity=0.420  Sum_probs=402.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++||+.++++++++||.++|++.+++-...++.++...++.+++|++++.+...+..+..+...........
T Consensus       118 ~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~  197 (626)
T KOG1175|consen  118 LKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLL  197 (626)
T ss_pred             CCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhc
Confidence            78999999999999999999999999999999999999999999999999999999999887766666555544443322


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchh-hHHHhhhc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEG  160 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~-~~~~~~~~  160 (499)
                      ...+........-.........|++.++....     ...+...+.+|+.+|+|||||||.||++.+++.. ++..+...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~  272 (626)
T KOG1175|consen  198 VSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTS  272 (626)
T ss_pred             ccccccccceeeEEecccccccHHHHhhhcCC-----CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhc
Confidence            22221111111111111224566666555433     2336677889999999999999999999998865 45555666


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC-ChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ...++++++|++.++....|+.+... +++++++|+++++.+... ++..+++.+.++++|.+++.|+.++.|.+.....
T Consensus       273 ~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~  352 (626)
T KOG1175|consen  273 RYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQED  352 (626)
T ss_pred             ceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccc
Confidence            67789999999999999999999988 888999999999997655 7889999999999999999999999887776543


Q ss_pred             --cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCCC
Q 010854          239 --GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       239 --~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                        .+++++||.+.+.||+++++..+++...+....++..||+||+|..+....... +-..++.+.|.+|+.+.|+|++|
T Consensus       353 ~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g  432 (626)
T KOG1175|consen  353 VTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENG  432 (626)
T ss_pred             ccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCC
Confidence              444567999999999999999999998885557999999999999888777776 67889999999999999999999


Q ss_pred             CCCCCCCCcceeeEeccccc-ccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.+. +.|+|++.+..+ +....+.+..+   +|+...+.+..++|.|||.+++|++||+++.||.||+|+++|.++
T Consensus       433 ~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~e---rf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRi  508 (626)
T KOG1175|consen  433 NELPPST-GNGELRLKPPWPPGMFRTLWGNHE---RFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRI  508 (626)
T ss_pred             CCcCCCC-ceeEEEEeCCCCccccccccCCHH---HhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceee
Confidence            9999875 479999965555 44333333222   565566667778999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      ++.|||+++. .||.|.|++|++.+++..| +.+++||++.++ +.+.++|.+.|++++++++.++..|+.|+++++||+
T Consensus       509 gtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~~g-~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPk  585 (626)
T KOG1175|consen  509 GTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFVVLKSG-SHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPK  585 (626)
T ss_pred             cHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEEEEcCC-CCChHHHHHHHHHHHHhhcCcccccceeEecCCCCc
Confidence            9999999996 9999999999999999988 999999999998 557789999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhh
Q 010854          475 TASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~~  492 (499)
                      |.+||+.|+.||+.+.++
T Consensus       586 TrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  586 TRSGKIMRRALRKIASGK  603 (626)
T ss_pred             cccchhHHHHHHHHhccC
Confidence            999999999999988776

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1e-62  Score=514.10  Aligned_cols=476  Identities=26%  Similarity=0.407  Sum_probs=370.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccc---hhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL---YSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+++++.+++++++++++|+++...+..+..+.   +......
T Consensus       110 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  189 (625)
T TIGR02188       110 VKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEK  189 (625)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999999999998764332221111   1122222


Q ss_pred             CC--Cc-eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           79 AP--LK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        79 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      .+  .. .+++........+. ......++++.....     ....+....++++++++|||||||.||||+++|.+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~  263 (625)
T TIGR02188       190 CPVSVEHVLVVRRTGNPVPWV-EGRDVWWHDLMAKAS-----AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLL  263 (625)
T ss_pred             CCCCccEEEEEcCCCCCcCcc-ccccccHHHHHhhcC-----CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHH
Confidence            22  11 22221111111110 112345666654321     11223345678999999999999999999999998765


Q ss_pred             Hhh-hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 CTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      ... .....++++++|++++..|++|..+... ++.+++.|+++++.+..   .++..+++.|+++++|++.++|++++.
T Consensus       264 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  343 (625)
T TIGR02188       264 YAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRA  343 (625)
T ss_pred             HHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHH
Confidence            543 3344568899999999999999988765 88999999999987532   357899999999999999999999999


Q ss_pred             HHccCCC--CcccccceeEEEeecCCCChhhHHHHHhhccc--CceeccccccceeeeeecCCCC-CCCccccccccCCC
Q 010854          231 WRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMT  305 (499)
Q Consensus       231 l~~~~~~--~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~  305 (499)
                      |.+....  ...++++||.++++|+++++++.+++.+.+..  +.+++.||+||+++.+...... .....+++|.|++|
T Consensus       344 l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g  423 (625)
T TIGR02188       344 LMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFG  423 (625)
T ss_pred             HHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCC
Confidence            9886542  34568899999999999999999999887643  7899999999998765443322 23456789999999


Q ss_pred             ceEEEECCCCCCCC-CCCCcceeeEecccccccc-cccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc
Q 010854          306 AGLVILDECGVPYP-DDQPCVGEVGLFPLYLGAS-DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA  383 (499)
Q Consensus       306 ~~~~i~d~~g~~~~-~g~~~~Gei~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~  383 (499)
                      ++++|+|++|++++ .|+  .|||++...+.+.. .++.+++.....+.    ...++||+|||++++|++|++++.||.
T Consensus       424 ~~~~i~d~~g~~~~~~g~--~GeL~v~~p~p~~~~gy~~~~~~~~~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~  497 (625)
T TIGR02188       424 IEPAVVDEEGNPVEGPGE--GGYLVIKQPWPGMLRTIYGDHERFVDTYF----SPFPGYYFTGDGARRDKDGYIWITGRV  497 (625)
T ss_pred             ceEEEECCCCCCCCCCCC--eEEEEEccCCCcccccccCChHHHHHHHh----ccCCCEEECCceEEEcCCCcEEEEecc
Confidence            99999999999998 888  59999943222111 12222221111111    123569999999999999999999999


Q ss_pred             CCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee
Q 010854          384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV  463 (499)
Q Consensus       384 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p  463 (499)
                      ||+||++|++|+|.+||++|. .||+|.+++|++++++..+ +.++++|++.++...+ +++.+.++++++++|++++.|
T Consensus       498 dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P  574 (625)
T TIGR02188       498 DDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDGYEPD-DELRKELRKHVRKEIGPIAKP  574 (625)
T ss_pred             cCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEEeCCCCCCC-HHHHHHHHHHHHhhcCCCccC
Confidence            999999999999999999997 8999999999999998888 9999999998765533 446667888888999999999


Q ss_pred             eEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          464 SLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       464 ~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +.|+++++||+|++||++|+.|++.+.+.
T Consensus       575 ~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       575 DKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             cEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            99999999999999999999999998765

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-62  Score=512.70  Aligned_cols=479  Identities=27%  Similarity=0.380  Sum_probs=365.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccch---hhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY---SKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++......+.....   ......
T Consensus       136 v~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  215 (655)
T PRK03584        136 VGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAA  215 (655)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999987543222211111   122222


Q ss_pred             CCC--ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH-
Q 010854           79 APL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-  155 (499)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~-  155 (499)
                      .+.  ..+++.................|.+++.....    ..........+++++|+|||||||.||||+++|.+++. 
T Consensus       216 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~  291 (655)
T PRK03584        216 LPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLE  291 (655)
T ss_pred             CCCccEEEEEecCCCcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHH
Confidence            222  22222211110111112234567776652211    11222345679999999999999999999999998754 


Q ss_pred             HhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC---CCChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854          156 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWR  232 (499)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  232 (499)
                      .+......++++++|++++..++.|..+. .++.+++.|+++++.++   ..++..+++.++++++|++.++|++++.++
T Consensus       292 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~  370 (655)
T PRK03584        292 HLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACE  370 (655)
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHH
Confidence            34455556788999999999999887543 36789999999998764   236789999999999999999999999987


Q ss_pred             ccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc-cCceeccccccceeeeeecCCCCCCCccccccccCCCceEE
Q 010854          233 NTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV  309 (499)
Q Consensus       233 ~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  309 (499)
                      +...  ....++++||.++++|+++++++.+++...+. +..+.+.||+||+++.+...........+++|.|.+|++++
T Consensus       371 ~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~  450 (655)
T PRK03584        371 KAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVE  450 (655)
T ss_pred             hcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeE
Confidence            7532  23467899999999999999999999988773 57899999999986544433333344568899999999999


Q ss_pred             EECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee
Q 010854          310 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL  389 (499)
Q Consensus       310 i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~  389 (499)
                      |+|++|+++ .|+  .|||+|.....+....+.+......+.. ....+..+||+|||+|++|++|+++++||.||+||+
T Consensus       451 ivd~~g~~~-~g~--~GeL~v~gp~p~~~~gy~~~~~~~~~~~-~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~  526 (655)
T PRK03584        451 AWDEDGRPV-VGE--VGELVCTKPFPSMPLGFWNDPDGSRYRD-AYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNR  526 (655)
T ss_pred             EECCCCCCC-CCC--ceEEEEccCCCCCcceeeCCCccchHHH-hhhccCCCEeecCCeEEECCCCeEEEEeeccCeeec
Confidence            999999998 677  5999994322121111212111111111 111122457899999999999999999999999999


Q ss_pred             CceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEc
Q 010854          390 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVV  469 (499)
Q Consensus       390 ~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~  469 (499)
                      +|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+ +++.+.+++++.++|++|+.|..|+++
T Consensus       527 ~G~rI~p~EIE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v  603 (655)
T PRK03584        527 GGVRIGTAEIYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAEGVTLD-DALRARIRTTIRTNLSPRHVPDKIIAV  603 (655)
T ss_pred             CcEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECCCCCCc-HHHHHHHHHHHHhhCCCCcCCCEEEEC
Confidence            999999999999996 8999999999999998777 9999999998765433 456677888888999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhh
Q 010854          470 PEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       470 ~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++||+|++|||+|+.|++.+.+.
T Consensus       604 ~~lP~t~sGKi~r~~lr~~~~~~  626 (655)
T PRK03584        604 PDIPRTLSGKKVELPVKKLLHGR  626 (655)
T ss_pred             CCCCCCCCccchHHHHHHHHcCC
Confidence            99999999999999999988654

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.3e-62  Score=511.15  Aligned_cols=475  Identities=27%  Similarity=0.363  Sum_probs=360.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccc---cchhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF---PLYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..   +.+......
T Consensus       136 v~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~  215 (652)
T TIGR01217       136 VRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKE  215 (652)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999999999999999999987543222211   112222222


Q ss_pred             CCC-c-eEEecccCCC-CCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           79 APL-K-AIVLPAIGND-VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        79 ~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      .+. . .+++...... ...........|+++......    ..........+++++|+|||||||.||||+++|.+++.
T Consensus       216 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~  291 (652)
T TIGR01217       216 LPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLV  291 (652)
T ss_pred             CCCccEEEEEeCCCCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHH
Confidence            221 1 2222211100 000001234567776553221    11112234568999999999999999999999998654


Q ss_pred             -HhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          156 -CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       156 -~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                       .+......++++++|++++..+++|..+. .++.+++.|+++++.++.   .++..+++.++++++|++...|++++.+
T Consensus       292 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l  370 (652)
T TIGR01217       292 QHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMAC  370 (652)
T ss_pred             HHHHHHHhccCCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHH
Confidence             33444455788999999999999998642 356899999999998632   2567899999999999998888888777


Q ss_pred             HccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc-cCceeccccccceeeeeecCCCCCCCccccccccCCCceE
Q 010854          232 RNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL  308 (499)
Q Consensus       232 ~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~  308 (499)
                      .+...  ....++++||.++++|+++++++.+++.+.+. +..+.+.||+||+++.+...........+++|.|.+|+++
T Consensus       371 ~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v  450 (652)
T TIGR01217       371 RKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAV  450 (652)
T ss_pred             HhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCce
Confidence            65432  23567899999999999999999999887764 2457789999997544433333334456788999999999


Q ss_pred             EEECCCCCCCCCCCCcceeeEecccccccc-cccccccccc---hhhcCCCCCCCccccccCceeEeecCceEEEecccC
Q 010854          309 VILDECGVPYPDDQPCVGEVGLFPLYLGAS-DRLLNADHEE---VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD  384 (499)
Q Consensus       309 ~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~  384 (499)
                      +|+|++|+++ .|+  .|||++.....+.. .++.+++.+.   .++.     +.++||+|||+|++|+||+++++||.|
T Consensus       451 ~ivd~~g~~~-~g~--~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~-----~~~g~~~tGDlg~~d~dG~l~i~GR~d  522 (652)
T TIGR01217       451 QSWDPEGKPV-TGE--VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-----TYPGVWRHGDWITLTPRGGIVIHGRSD  522 (652)
T ss_pred             EEECCCCCCC-CCC--ccEEEEecCCCccccceeCCCccchhHHhhhc-----CCCCEEEcCCcEEECCCCcEEEEeccc
Confidence            9999999998 476  59999943222211 1222222111   1221     234678999999999999999999999


Q ss_pred             CeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeee
Q 010854          385 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS  464 (499)
Q Consensus       385 d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~  464 (499)
                      |+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++++|++.++...+ +++.+.++++++++|++|+.|.
T Consensus       523 d~I~~~G~ri~p~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~  599 (652)
T TIGR01217       523 STLNPQGVRMGSAEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAPGATLD-DALLDRIKRTIRAGLSPRHVPD  599 (652)
T ss_pred             CeEecCCEEcCHHHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCCcCCC
Confidence            99999999999999999997 9999999999999998888 9999999998765544 4566778888889999999999


Q ss_pred             EEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          465 LVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       465 ~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      .|+++++||+|++||++|+.|++.+.++
T Consensus       600 ~i~~v~~lP~T~sGKi~r~~Lr~~~~~~  627 (652)
T TIGR01217       600 EIIEVPGIPHTLTGKRVEVAVKRVLQGT  627 (652)
T ss_pred             EEEECCCCCCCCCccChHHHHHHHHcCC
Confidence            9999999999999999999999987543

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-62  Score=507.62  Aligned_cols=474  Identities=26%  Similarity=0.376  Sum_probs=367.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCcccc---chhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP---LYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.........+   ........
T Consensus       120 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  199 (637)
T PRK00174        120 VKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALAN  199 (637)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHh
Confidence            689999999999999999999999999999999999999999999999999999999875432111111   11112221


Q ss_pred             CCCc--eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           79 APLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      .+..  .+++......... .......++++.....     .........++++++++|||||||.||||+++|++++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~  273 (637)
T PRK00174        200 CPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGAS-----DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVY  273 (637)
T ss_pred             CCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcC-----CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHH
Confidence            2221  2222111111110 0112344566554221     111223456789999999999999999999999997654


Q ss_pred             hh-hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC---CCChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          157 TA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       157 ~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      +. .....++++++|++++..|++|..+... ++.++++|+++++.++   ..++..+++.|+++++|++.++|++++.|
T Consensus       274 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  353 (637)
T PRK00174        274 AAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRAL  353 (637)
T ss_pred             HHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHH
Confidence            43 3334568889999999999999998764 8899999999998753   23578999999999999999999999999


Q ss_pred             HccCCC--CcccccceeEEEeecCCCChhhHHHHHhhccc--CceeccccccceeeeeecCCCC-CCCccccccccCCCc
Q 010854          232 RNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTA  306 (499)
Q Consensus       232 ~~~~~~--~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~  306 (499)
                      ++....  ...++++||.++++|+++++++.+++...+..  +.+++.||+||++......... .....+++|.|++|+
T Consensus       354 ~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~  433 (637)
T PRK00174        354 MKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGI  433 (637)
T ss_pred             HhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCc
Confidence            887543  34567899999999999999999988877643  7899999999998755433221 223457899999999


Q ss_pred             eEEEECCCCCCCCCCCCcceeeEecc---cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc
Q 010854          307 GLVILDECGVPYPDDQPCVGEVGLFP---LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA  383 (499)
Q Consensus       307 ~~~i~d~~g~~~~~g~~~~Gei~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~  383 (499)
                      +++|+|++|++++.|+  .|||+|..   ..+.+  ++.+++.+...+    ....++||+|||++++|++|++++.||.
T Consensus       434 ~~~i~d~~g~~~~~g~--~Gel~v~g~~p~~~~g--y~~~~~~~~~~~----~~~~~g~~~TGDl~~~d~dG~l~~~GR~  505 (637)
T PRK00174        434 QPAVVDEEGNPLEGGE--GGNLVIKDPWPGMMRT--IYGDHERFVKTY----FSTFKGMYFTGDGARRDEDGYYWITGRV  505 (637)
T ss_pred             eEEEECCCCCCCCCCC--cEEEEEcCCCCccccc--ccCCHHHHHHhh----hcCCCCEEECCceEEEcCCCcEEEEEec
Confidence            9999999999999998  49999943   33322  222222111111    1134579999999999999999999999


Q ss_pred             CCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee
Q 010854          384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV  463 (499)
Q Consensus       384 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p  463 (499)
                      ||+||++|++|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++...+ +++.+.+++++.+.|+.|+.|
T Consensus       506 dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P  582 (637)
T PRK00174        506 DDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEEPS-DELRKELRNWVRKEIGPIAKP  582 (637)
T ss_pred             ccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHhhcCCccCC
Confidence            999999999999999999996 8999999999999998888 9999999998765433 455667788888899999999


Q ss_pred             eEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          464 SLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       464 ~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ..++++++||+|++||++|++|++.+.+.
T Consensus       583 ~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        583 DVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             CEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            99999999999999999999999987665

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-62  Score=503.63  Aligned_cols=455  Identities=17%  Similarity=0.168  Sum_probs=348.9

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc---C
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---A   79 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---~   79 (499)
                      .+||+|+++++|++++++++|||+++|++++|+++..+.+++.++|++++++++|++.+...      .+......   .
T Consensus        65 ~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~  138 (539)
T PRK06334         65 YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEY  138 (539)
T ss_pred             ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccc
Confidence            37999999999999999999999999999999999999999999999999999999875421      11111110   1


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccC--CCCCC---CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD--YHPRP---NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      +...+.+....         ....+.+......  ..+..   .........++++++++|||||||.||+|+++|+++.
T Consensus       139 ~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~  209 (539)
T PRK06334        139 PFSLIYMEEVR---------KELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLL  209 (539)
T ss_pred             cccEEEEehhh---------hhccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHH
Confidence            11112111100         0011111110000  00000   0011123567999999999999999999999999998


Q ss_pred             HHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHc
Q 010854          155 RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN  233 (499)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  233 (499)
                      .........++++.+|++++.+|++|.+++.. ++.++..|+++++.+..++++.+++.|+++++|++.++|++++.|++
T Consensus       210 ~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  289 (539)
T PRK06334        210 ANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILK  289 (539)
T ss_pred             HHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHH
Confidence            88777766778899999999999999999875 78899999999987656788999999999999999999999999988


Q ss_pred             cCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-
Q 010854          234 TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-  312 (499)
Q Consensus       234 ~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-  312 (499)
                      .......+++++|.+++||+++++++.+++...+++..+++.||+||++..+...........+++|+|+++++++|+| 
T Consensus       290 ~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~  369 (539)
T PRK06334        290 TAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSE  369 (539)
T ss_pred             hhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcC
Confidence            7655566788999999999999999999998888778999999999998665544333333456899999999999999 


Q ss_pred             CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854          313 ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG  391 (499)
Q Consensus       313 ~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G  391 (499)
                      +++.+++.|+  .|||+| ++..+.+  ++.+++... ..    ...+++||+|||+|++|++|++++.||.||+||++|
T Consensus       370 ~~~~~~~~g~--~Gel~v~g~~~~~G--Y~~~~~~~~-~~----~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G  440 (539)
T PRK06334        370 ETKVPVSSGE--TGLVLTRGTSLFSG--YLGEDFGQG-FV----ELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGA  440 (539)
T ss_pred             CCCccCCCCc--eEEEEEecCccccc--ccCCccccc-ce----eeCCceeEECCCEEEECCCCeEEEEeccCCeEEECC
Confidence            5688999998  599999 5554443  122222111 10    123578999999999999999999999999999999


Q ss_pred             eeechHHHHHHHhhcCcccee------eeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCceeee
Q 010854          392 IKTSSVEIERVCDQADESILE------TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVS  464 (499)
Q Consensus       392 ~~v~~~~iE~~l~~~~~~v~~------~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~p~  464 (499)
                      ++|+|.|||++|. .||+|.+      ++|++.++.  . ..++++++..    .+.+++.++    +.+. ++.|+.|+
T Consensus       441 ~~v~p~eIE~~l~-~~~~v~~~~~~~~~~v~~~~~~--~-~~~~~~~~~~----~~~~~~~~~----l~~~~~~~~~~P~  508 (539)
T PRK06334        441 EMVSLEALESILM-EGFGQNAADHAGPLVVCGLPGE--K-VRLCLFTTFP----TSISEVNDI----LKNSKTSSILKIS  508 (539)
T ss_pred             EEECHHHHHHHHH-HccCCccccccCceEEEcCCCC--c-eEEEEEEecc----CChHHHHHH----HHhcCCcccccch
Confidence            9999999999997 8999987      666666632  1 3455555432    244455555    4343 78899999


Q ss_pred             EEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          465 LVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       465 ~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      .++++++||+|++|||+|+.|++.+..-+
T Consensus       509 ~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  537 (539)
T PRK06334        509 YHHQVESIPMLGTGKPDYCSLNALAKSLF  537 (539)
T ss_pred             heeeecccccccCCcccHHHHHHHHHHhh
Confidence            99999999999999999999999876543

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-61  Score=501.40  Aligned_cols=458  Identities=23%  Similarity=0.320  Sum_probs=371.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++.+|+++........        ...+ 
T Consensus        95 v~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~  166 (570)
T PRK04319         95 VEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPS  166 (570)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCC
Confidence            6899999999999999999999999999999999999999999999999999999998764321110        0111 


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ...+++.. ...   .......++.+++.....     ........++++++++|||||||.||+|+++|+++...+...
T Consensus       167 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~  237 (570)
T PRK04319        167 LKHVLLVG-EDV---EEGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTG  237 (570)
T ss_pred             ceEEEEEC-CCc---CCCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHH
Confidence            11222211 111   012234566666544321     122233457899999999999999999999999999888777


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC--C
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--L  237 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~  237 (499)
                      ...++++++|++++..|++|.+++.. ++.+++.|+++++.+..++++.+++.|+++++|+++++|++++.|.+...  .
T Consensus       238 ~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  317 (570)
T PRK04319        238 KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV  317 (570)
T ss_pred             HHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc
Confidence            77788999999999999999998765 88999999999998777789999999999999999999999999987643  2


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      ...+++++|.++++|+++++++.+++...+ +..+++.||+||++..+...........+++|.|.|+++++|+|+++.+
T Consensus       318 ~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~  396 (570)
T PRK04319        318 KKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNE  396 (570)
T ss_pred             ccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCC
Confidence            345678999999999999999999888765 6889999999999876554433333456789999999999999999999


Q ss_pred             CCCCCCcceeeEec---ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          318 YPDDQPCVGEVGLF---PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       318 ~~~g~~~~Gei~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++.|+  +|||++.   +..+.  .++.+++.+...+.       ++||+|||+++++++|++++.||.+|+|+.+|++|
T Consensus       397 ~~~g~--~Gel~i~~~~~~~~~--GY~~~~~~~~~~~~-------~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i  465 (570)
T PRK04319        397 LPPNR--MGNLAIKKGWPSMMR--GIWNNPEKYESYFA-------GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERV  465 (570)
T ss_pred             CCCCC--ceEEEEcCCCChHHh--HhcCCHHHhhhhhc-------CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEE
Confidence            99998  5999994   22221  12223333333332       46999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||+++. ++|+|.+++|++.+++..+ +.+++++++.++... .+++.+.+++++++.|+.|+.|..++++++||+
T Consensus       466 ~p~eIE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~a~v~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~  542 (570)
T PRK04319        466 GPFEVESKLM-EHPAVAEAGVIGKPDPVRG-EIIKAFVALRPGYEP-SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPK  542 (570)
T ss_pred             CHHHHHHHHh-hCCCeeecceecccCcCCc-eEEEEEEEECCCCCC-CHHHHHHHHHHHHHhcccccCCcEEEEeCCCCC
Confidence            9999999997 8999999999999998888 999999998875443 245666788888889999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHh
Q 010854          475 TASNKLLRRVLRDQIKH  491 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~  491 (499)
                      |++||++|++|++++.+
T Consensus       543 t~~GKv~r~~L~~~~~~  559 (570)
T PRK04319        543 TRSGKIMRRVLKAWELG  559 (570)
T ss_pred             CCchhhhHHHHHHHHhC
Confidence            99999999999998754

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.1e-61  Score=505.09  Aligned_cols=467  Identities=21%  Similarity=0.208  Sum_probs=366.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++| +++|+++.++++++.+++++++++++|++..... ..............+.
T Consensus        80 i~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~  157 (632)
T PRK07529         80 VGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPG-TDIWQKVAEVLAALPE  157 (632)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCC-chHHHHHHHHHhcCCc
Confidence            6799999999999999999999999999 5799999999999999999999999999864310 0111112222222222


Q ss_pred             ceEEecccC-CCCCCC-----------CCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEec
Q 010854           82 KAIVLPAIG-NDVGIP-----------LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT  149 (499)
Q Consensus        82 ~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s  149 (499)
                      ...++.... ......           ...+...+.+.+.....   ..........++++++++|||||||.||+|+++
T Consensus       158 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~s  234 (632)
T PRK07529        158 LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHT  234 (632)
T ss_pred             ceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEc
Confidence            222222111 100000           12234456665544321   111122234679999999999999999999999


Q ss_pred             chhhHHHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC-C-C---hhHHHHHHHHhCCeEEec
Q 010854          150 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS-P-L---ERSFGKFVQDAGVTVLGT  223 (499)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~-~-~---~~~~~~~i~~~~~t~l~~  223 (499)
                      |+++...+......+++++++++++.+|++|.+++.. ++.+++.|+++++.++. + .   ...+++.++++++|++.+
T Consensus       235 h~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~  314 (632)
T PRK07529        235 HGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSG  314 (632)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEe
Confidence            9999888777766778899999999999999999875 88999999999998632 1 1   257889999999999999


Q ss_pred             chHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC
Q 010854          224 VPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT  303 (499)
Q Consensus       224 ~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~  303 (499)
                      +|+++..|++... ...+++++|.+++||+++++++.+.+++.+ ++++++.||+||++.....+........+++|.|+
T Consensus       315 ~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~  392 (632)
T PRK07529        315 VPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRL  392 (632)
T ss_pred             HHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCccccc
Confidence            9999999988653 235688999999999999999999998766 78999999999998766555444445678999999


Q ss_pred             CCceEEEE--CCCC---CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceE
Q 010854          304 MTAGLVIL--DECG---VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  377 (499)
Q Consensus       304 ~~~~~~i~--d~~g---~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l  377 (499)
                      |++.++|+  |++|   ++++.|+  +|||+| ++..+.++  + +.+.+...+      .+++||+|||+|++|++|++
T Consensus       393 p~~~v~i~~~d~~g~~~~~~~~g~--~Gel~v~gp~v~~GY--~-~~~~~~~~~------~~~gw~~TGDlg~~d~dG~l  461 (632)
T PRK07529        393 PYQRVRVVILDDAGRYLRDCAVDE--VGVLCIAGPNVFSGY--L-EAAHNKGLW------LEDGWLNTGDLGRIDADGYF  461 (632)
T ss_pred             CCceEEEEEcCCCCcccccCCCCC--ceEEEEECCCccccc--c-CCccccccc------cCCCceEcCcEEEEcCCceE
Confidence            99999985  6777   7889998  599999 66655542  2 222222222      24689999999999999999


Q ss_pred             EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc
Q 010854          378 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       378 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  457 (499)
                      ++.||.||+||++|++|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.+++.+++++    .+
T Consensus       462 ~i~GR~~d~i~~~G~~i~p~eIE~~l~-~~p~V~~a~vvg~~d~~~g-e~~~a~v~l~~~~~~~~~~l~~~~~~----~l  535 (632)
T PRK07529        462 WLTGRAKDLIIRGGHNIDPAAIEEALL-RHPAVALAAAVGRPDAHAG-ELPVAYVQLKPGASATEAELLAFARD----HI  535 (632)
T ss_pred             EEEecccCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceeEEEEEEcCCCCCCHHHHHHHHHH----hc
Confidence            999999999999999999999999997 8999999999999998888 99999999998777777777776554    45


Q ss_pred             C-CceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          458 N-PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       458 ~-~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      + .++.|+.++++++||+|++||++|+.|++.+..+
T Consensus       536 ~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~  571 (632)
T PRK07529        536 AERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRR  571 (632)
T ss_pred             chhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHH
Confidence            4 4688999999999999999999999999887654

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-61  Score=502.14  Aligned_cols=475  Identities=23%  Similarity=0.319  Sum_probs=364.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccc---cchhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF---PLYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..++++++++++|+++...+..+..   +.+......
T Consensus       106 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  185 (629)
T PRK10524        106 VQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIAL  185 (629)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999977533222211   112222221


Q ss_pred             C---CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           79 A---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      .   ....+++........ ........+.++......    .........++++++++|||||||.||||+++|.++..
T Consensus       186 ~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~  260 (629)
T PRK10524        186 AQHKPRHVLLVDRGLAPMA-RVAGRDVDYATLRAQHLG----ARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAV  260 (629)
T ss_pred             cCCCCCEEEEEeCCCCCcC-cccCCcccHHHHHhcCCC----CCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHH
Confidence            1   122222221111100 011123455555443221    11112234578999999999999999999999998754


Q ss_pred             Hhh-hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC---CCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 CTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      ... .....++++++|++++..+++|..+... ++.+++.|+++++.++   ..++..+++.|+++++|++.++|++++.
T Consensus       261 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  340 (629)
T PRK10524        261 ALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRV  340 (629)
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHH
Confidence            443 3334567899999999999999988755 8899999999998764   2357889999999999999999999999


Q ss_pred             HHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCC
Q 010854          231 WRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMT  305 (499)
Q Consensus       231 l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~  305 (499)
                      |.+...  ....+++++|.++++|+++++++.+++.+.+ ++.+++.||+||++..+......   .....+++|.|+++
T Consensus       341 l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g  419 (629)
T PRK10524        341 LKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYG  419 (629)
T ss_pred             HHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCC
Confidence            887643  2345688999999999999999999988776 68899999999998433322211   23346789999999


Q ss_pred             ceEEEECC-CCCCCCCCCCcceeeEe-cc---cccccccccccccccc-hhhcCCCCCCCccccccCceeEeecCceEEE
Q 010854          306 AGLVILDE-CGVPYPDDQPCVGEVGL-FP---LYLGASDRLLNADHEE-VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  379 (499)
Q Consensus       306 ~~~~i~d~-~g~~~~~g~~~~Gei~v-~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~  379 (499)
                      ++++|+|+ +|++++.|+  .|||++ ++   +++.+  ++.+++... .+|..    .+++||+|||+|++|++|++++
T Consensus       420 ~~~~i~d~~~g~~~~~g~--~Gel~i~gp~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~TGDl~~~d~dG~l~i  491 (629)
T PRK10524        420 YNVKLLNEVTGEPCGPNE--KGVLVIEGPLPPGCMQT--VWGDDDRFVKTYWSL----FGRQVYSTFDWGIRDADGYYFI  491 (629)
T ss_pred             ceEEEEeCCCCCCCCCCC--cEEEEEcCCCChhhcCC--ccCChHHHHHhhhcc----CCCcEEEcCCcEEEcCCCcEEE
Confidence            99999997 999999998  599999 44   22222  111221111 12211    1457999999999999999999


Q ss_pred             ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC----HHHHHHHHHHHHHh
Q 010854          380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQS  455 (499)
Q Consensus       380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~  455 (499)
                      .||.||+||++|++|+|.+||++|. .||+|.+++|++++++..+ +.++++|++.++...+    .+++.+.+++++++
T Consensus       492 ~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~  569 (629)
T PRK10524        492 LGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-QVAVAFVVPKDSDSLADREARLALEKEIMALVDS  569 (629)
T ss_pred             EEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-eEEEEEEEECCCCccccccchHHHHHHHHHHHHh
Confidence            9999999999999999999999997 8999999999999998877 8999999988754322    24567788888999


Q ss_pred             hcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          456 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       456 ~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +|+.|+.|..|+++++||+|++||++|+.|++.+.++
T Consensus       570 ~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  606 (629)
T PRK10524        570 QLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR  606 (629)
T ss_pred             hcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            9999999999999999999999999999999987653

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=7.1e-61  Score=494.04  Aligned_cols=467  Identities=17%  Similarity=0.125  Sum_probs=352.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhh-hcCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAP   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++++++...      ....... ...+
T Consensus        54 v~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~  127 (563)
T PLN02860         54 LRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCS------SWYEELQNDRLP  127 (563)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccc------hHHHHHhhccCC
Confidence            68999999999999999999999999999999999999999999999999999999987431      1111111 1111


Q ss_pred             CceEEecccCCCCCC-CCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           81 LKAIVLPAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ....++......... .........+++......    .........++++++++|||||||.||+|+++|+++..+...
T Consensus       128 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~  203 (563)
T PLN02860        128 SLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA  203 (563)
T ss_pred             ceeEEEEecCcccccccchhhccccchhccCccc----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHH
Confidence            111111111110000 000011111111111000    001112345789999999999999999999999999877766


Q ss_pred             cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC--
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--  237 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--  237 (499)
                      ....+++.++|+++...|++|.+++..++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|++....  
T Consensus       204 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  282 (563)
T PLN02860        204 KIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM  282 (563)
T ss_pred             HHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh
Confidence            666678899999999999999999888889999999999886 56889999999999999999999999999876432  


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------------------CCc
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------------------PQA  295 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------------------~~~  295 (499)
                      ...+++++|.+++||+.+++++.+.+++.+++..+++.||+||++..+.......                      ...
T Consensus       283 ~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (563)
T PLN02860        283 TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQ  362 (563)
T ss_pred             ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccC
Confidence            2345789999999999999999999988887889999999999875443221111                      111


Q ss_pred             cccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecC
Q 010854          296 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       296 ~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  374 (499)
                      ..++|+|+|+++++|++++     +|+  +|||++ ++..+.+  ++.+++.+...+      ..++||+|||+|++|++
T Consensus       363 ~~~vG~p~~~~~v~i~~~~-----~g~--~Gel~v~g~~~~~G--Y~~~~~~t~~~~------~~~g~~~TGDl~~~d~d  427 (563)
T PLN02860        363 GVCVGKPAPHVELKIGLDE-----SSR--VGRILTRGPHVMLG--YWGQNSETASVL------SNDGWLDTGDIGWIDKA  427 (563)
T ss_pred             CcccCCccCCcEEEEecCC-----CCc--eeEEEEecCccccc--ccCCccccchhc------cCCCeEEccceEEEcCC
Confidence            2368999999999999865     455  599999 5554433  222222222212      34689999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC----------HHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ----------PDK  444 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~  444 (499)
                      |++++.||.+|+||++|++|+|.+||+++. .||+|.+++|++.++...+ +.++++|++.++....          ...
T Consensus       428 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  505 (563)
T PLN02860        428 GNLWLIGRSNDRIKTGGENVYPEEVEAVLS-QHPGVASVVVVGVPDSRLT-EMVVACVRLRDGWIWSDNEKENAKKNLTL  505 (563)
T ss_pred             CCEEEeecccceeEECCEEccHHHHHHHHH-hCCCcceeEEEEEecCcCC-ceEEEEEEECCccccccccchhhcccccc
Confidence            999999999999999999999999999996 8999999999999988888 8999999987652100          011


Q ss_pred             HHHHHHHHHHh-hcCCceeeeEEEEc-CCCCCCCCcHHHHHHHHHHHHhhhhhc
Q 010854          445 LKMIFSKAIQS-KLNPLFKVSLVKVV-PEFPRTASNKLLRRVLRDQIKHELSVR  496 (499)
Q Consensus       445 l~~~~~~~~~~-~l~~~~~p~~~~~~-~~iP~t~~GKv~r~~l~~~~~~~~~~~  496 (499)
                      ..+.+++++.+ +|+.|+.|..++++ ++||+|++||++|++|++++.+++.+.
T Consensus       506 ~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        506 SSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             cHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHHhcc
Confidence            12344455555 59999999888765 789999999999999999998887764

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.5e-60  Score=491.36  Aligned_cols=460  Identities=19%  Similarity=0.224  Sum_probs=361.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++.++++++....         . .....
T Consensus        89 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~---------~-~~~~~  158 (560)
T PLN02574         89 VRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEK---------L-SPLGV  158 (560)
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHH---------H-HhcCC
Confidence            6899999999999999999999999999999999999999999999999999999998753211         1 11111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+.... ... ........+.++......     ........++++++++|||||||.||+|+++|+++...+....
T Consensus       159 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~  231 (560)
T PLN02574        159 PVIGVPENY-DFD-SKRIEFPKFYELIKEDFD-----FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFV  231 (560)
T ss_pred             cEEecCccc-ccc-cCccCcccHHHHhhcCCc-----ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHH
Confidence            111111000 000 001122355555543221     1112234578999999999999999999999999887766443


Q ss_pred             e----ecc-CcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccC
Q 010854          162 A----HID-LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN  235 (499)
Q Consensus       162 ~----~~~-~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  235 (499)
                      .    .+. ....++++..+|++|.+++.. ++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|++..
T Consensus       232 ~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  310 (560)
T PLN02574        232 RFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKA  310 (560)
T ss_pred             hccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCc
Confidence            2    122 235678899999999999876 777888999999886 567899999999999999999999999998875


Q ss_pred             CC-CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC-CCCCccccccccCCCceEEEEC-
Q 010854          236 CL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-  312 (499)
Q Consensus       236 ~~-~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~d-  312 (499)
                      .. ...+++++|.++++|++++++..+.+.+.+++..+++.||+||++........ ......+++|.|.|+++++|+| 
T Consensus       311 ~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~  390 (560)
T PLN02574        311 KGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDW  390 (560)
T ss_pred             cccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeC
Confidence            43 34567899999999999999999999888878899999999999865443222 2224567899999999999999 


Q ss_pred             CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854          313 ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG  391 (499)
Q Consensus       313 ~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G  391 (499)
                      ++|++++.|+  .|||+| ++..+.+  ++.+++.+...+      ..++||+|||+|++|++|++++.||.+|+||++|
T Consensus       391 ~~g~~~~~g~--~Gei~v~g~~~~~G--Y~~~~~~t~~~~------~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G  460 (560)
T PLN02574        391 STGCLLPPGN--CGELWIQGPGVMKG--YLNNPKATQSTI------DKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKG  460 (560)
T ss_pred             CCCcCCCCCC--CeEEEEECcchhhh--hcCChhHhhhhc------cCCCCcccceEEEEECCCeEEEEecchhheEECC
Confidence            8899999998  499999 5544433  222232222222      3468999999999999999999999999999999


Q ss_pred             eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCC
Q 010854          392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE  471 (499)
Q Consensus       392 ~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~  471 (499)
                      ++|+|.+||++|. .||+|.+++|++++++..+ +.++++|+..++...+.+++.++    ++++|++|+.|..++++++
T Consensus       461 ~~v~~~eiE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~----~~~~l~~~~~p~~v~~v~~  534 (560)
T PLN02574        461 FQIAPADLEAVLI-SHPEIIDAAVTAVPDKECG-EIPVAFVVRRQGSTLSQEAVINY----VAKQVAPYKKVRKVVFVQS  534 (560)
T ss_pred             EEECHHHHHHHHH-hCCCcceEEEEccccCCCC-cceEEEEEeCCCCCCCHHHHHHH----HHHhccCcccCcEEEEeec
Confidence            9999999999997 8999999999999988777 88999999877655555555544    6678999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          472 FPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       472 iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      ||+|++||++|+.|++++.+.-++
T Consensus       535 iP~t~~GKi~r~~L~~~~~~~~~~  558 (560)
T PLN02574        535 IPKSPAGKILRRELKRSLTNSVSS  558 (560)
T ss_pred             cCCCCcchhhHHHHHHHHhhcccc
Confidence            999999999999999999776543

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.4e-61  Score=500.57  Aligned_cols=465  Identities=17%  Similarity=0.132  Sum_probs=352.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++.+..      +.+.......+.
T Consensus       100 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~  173 (651)
T PLN02736        100 IPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPS  173 (651)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCC
Confidence            68999999999999999999999999999999999999999999999999999999987542      122222222222


Q ss_pred             ceEEecccCCCCCC-----CCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           82 KAIVLPAIGNDVGI-----PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        82 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      ...++.........     .......+++++.......    ........++|+++|+|||||||.||||++||+++...
T Consensus       174 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~  249 (651)
T PLN02736        174 VRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSS----PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIAN  249 (651)
T ss_pred             ceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccC----CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHH
Confidence            22222221110000     0011234677766543221    11122346799999999999999999999999999998


Q ss_pred             hhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          157 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      +......+++.++|++++.+|++|.++...++.+++.|+++++.+.  ++..+++.|+++++|+++++|++++.+.+...
T Consensus       250 ~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        250 VAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            8888777888999999999999999999888889999999988763  56789999999999999999999988755310


Q ss_pred             -----------------------------CCc------------ccc-cceeEEEeecCCCChhhHHHHHhhcccCceec
Q 010854          237 -----------------------------LEG------------LDW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIE  274 (499)
Q Consensus       237 -----------------------------~~~------------~~l-~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~  274 (499)
                                                   ...            ..+ +++|.+++||+++++++.++++..+ +..+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~  406 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLE  406 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEE
Confidence                                         000            011 4899999999999999999888766 688999


Q ss_pred             cccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCC---CCCCCCcceeeEe-cccccccccccccccccch
Q 010854          275 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVP---YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEV  349 (499)
Q Consensus       275 ~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~---~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~  349 (499)
                      .||+||+++....... .....+++|.|+|+++++|+| +++..   ..++.  .|||+| ++..+.+  ++.+++.+..
T Consensus       407 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~--~GEl~vrgp~v~~G--Y~~~~~~t~~  481 (651)
T PLN02736        407 GYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYP--RGEICVRGPIIFKG--YYKDEVQTRE  481 (651)
T ss_pred             EechHHhchheeccCC-CCCCCCccCCccCceEEEEEEccccCcccCCCCCC--CceEEecCCccccc--cccCHHHHHh
Confidence            9999998865543332 234568899999999999998 33221   12222  499999 6666554  3334444333


Q ss_pred             hhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEE
Q 010854          350 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL  428 (499)
Q Consensus       350 ~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~  428 (499)
                      .|      +.++||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|. .||.|.+++|++.   ..+ +.+
T Consensus       482 ~~------~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~---~~~-~~~  550 (651)
T PLN02736        482 VI------DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD---SLN-SSL  550 (651)
T ss_pred             hh------ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHh-cCCCeeEEEEEec---CCC-cee
Confidence            33      34689999999999999999999999999996 799999999999996 8999999999983   244 789


Q ss_pred             EEEEEecCCC--------CCCHHHH---------HHHHHHHH-----HhhcCCceeeeEEEEcCCCC------CCCCcHH
Q 010854          429 VIFVVLKKGF--------TSQPDKL---------KMIFSKAI-----QSKLNPLFKVSLVKVVPEFP------RTASNKL  480 (499)
Q Consensus       429 ~~~v~~~~~~--------~~~~~~l---------~~~~~~~~-----~~~l~~~~~p~~~~~~~~iP------~t~~GKv  480 (499)
                      +|+|+++.+.        ..+..++         ++.+.+.+     +.+|+.|++|++|+++++.|      +|++||+
T Consensus       551 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki  630 (651)
T PLN02736        551 VAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKV  630 (651)
T ss_pred             EEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhh
Confidence            9999987521        1121222         22222222     23699999999999999876      6999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 010854          481 LRRVLRDQIKHELSV  495 (499)
Q Consensus       481 ~r~~l~~~~~~~~~~  495 (499)
                      +|+.|++.|++++++
T Consensus       631 ~R~~i~~~~~~~i~~  645 (651)
T PLN02736        631 KRPQAKAYFAKAISD  645 (651)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999998864

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.4e-59  Score=483.29  Aligned_cols=462  Identities=19%  Similarity=0.233  Sum_probs=365.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++.+.. .+......++....+.
T Consensus        77 ~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~  155 (547)
T PRK13295         77 VGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPA  155 (547)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCC
Confidence            679999999999999999999999999999999999999999999999999999999875310 0111111112122222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCC---CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      ...++....        ....++.++.......   ............++++++++|||||||.||+|+++|+++...+.
T Consensus       156 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~  227 (547)
T PRK13295        156 LRHVVVVGG--------DGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV  227 (547)
T ss_pred             cceEEEecC--------CCccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHH
Confidence            112221111        1223455544322110   01111122335678999999999999999999999999998888


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                      .....+++++++++++.+|++|.+++.. ++.+++.|+++++.+ ..+++.+++.++++++|++.++|+++..|......
T Consensus       228 ~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~  306 (547)
T PRK13295        228 PYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE  306 (547)
T ss_pred             HHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence            7777788999999999999999998765 889999999999886 56789999999999999999999999999987766


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ...+++++|.++++|+++++++.+++.+.+ ++++++.||+||++.....+.... .....++|+|.++++++|+|++++
T Consensus       307 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~  385 (547)
T PRK13295        307 SGRPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGA  385 (547)
T ss_pred             cCCCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCC
Confidence            667788999999999999999999988777 789999999999987654443221 223468899999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  .|||+| ++..+.+  ++.+++.+..        ..++||+|||+|+++++|++++.||.+|+++++|++|+
T Consensus       386 ~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~--------~~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~  453 (547)
T PRK13295        386 PLPAGQ--IGRLQVRGCSNFGG--YLKRPQLNGT--------DADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIP  453 (547)
T ss_pred             CCCCCC--CCeEEEEcCccccc--ccCCcccccc--------CCCCCeecceEEEEcCCceEEEEeccCCeEEECCEEEC
Confidence            999998  499999 5444432  2222222111        13569999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.+||++|. .+++|.+++|++++++..+ +.++++|++.++...+.+++.+++++   ..+++|+.|.+++++++||+|
T Consensus       454 p~~IE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~---~~l~~~~~P~~i~~v~~lP~t  528 (547)
T PRK13295        454 VVEIEALLY-RHPAIAQVAIVAYPDERLG-ERACAFVVPRPGQSLDFEEMVEFLKA---QKVAKQYIPERLVVRDALPRT  528 (547)
T ss_pred             HHHHHHHHH-hCCCeeeEEEEeeecCCCC-cEEEEEEEeCCCCCCCHHHHHHHHHh---ccCccccCCcEEEEeccCCCC
Confidence            999999996 8999999999999988877 89999999887654454555554432   379999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHh
Q 010854          476 ASNKLLRRVLRDQIKH  491 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~  491 (499)
                      ++||++|++|++.+.+
T Consensus       529 ~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        529 PSGKIQKFRLREMLRG  544 (547)
T ss_pred             CCccccHHHHHHHHhc
Confidence            9999999999987755

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-60  Score=499.81  Aligned_cols=436  Identities=19%  Similarity=0.214  Sum_probs=352.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++.+|++......+.             .
T Consensus        52 ~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------------~  118 (705)
T PRK06060         52 LSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQ-------------P  118 (705)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhc-------------c
Confidence            689999999999999999999999999999999999999999999999999999999875321000             0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..                 .....++......  . .........++++++++|||||||.||||.++|+++...+....
T Consensus       119 ~~-----------------~~~~~~~~~~~~~--~-~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~  178 (705)
T PRK06060        119 SR-----------------VAEAAELMSEAAR--V-APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMC  178 (705)
T ss_pred             cc-----------------cchhhhhhhhccc--c-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHH
Confidence            00                 0001111111000  0 00011123568999999999999999999999999988765543


Q ss_pred             -eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 -AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 -~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                       ..+++.++|+++...|++|.+++.. ++.+++.|+++++.+...++..+...++++++|+++++|+++..+++...  .
T Consensus       179 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~  256 (705)
T PRK06060        179 RKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--P  256 (705)
T ss_pred             HHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--c
Confidence             3567889999999999999988754 88899999999998766677888899999999999999999999887543  2


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      .+++++|.++++||++++++.+.+.+.+++.++++.||+||++..+..... .....+++|+|+++++++|+|++|++++
T Consensus       257 ~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~~~  335 (705)
T PRK06060        257 DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRV-DEWRLGTLGRVLPPYEIRVVAPDGTTAG  335 (705)
T ss_pred             ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccC-CCCCcCcccccCCCcEEEEECCCCCCCC
Confidence            346899999999999999999999888877899999999999865443322 2234578999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCC-CCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGM-PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      .|+  .|||+| ++..+.+            |++.+ ....+++||+|||+|+++++|++++.||.||+||++|++|+|.
T Consensus       336 ~g~--~GEl~i~g~~v~~G------------Y~~~~~~~~~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~  401 (705)
T PRK06060        336 PGV--EGDLWVRGPAIAKG------------YWNRPDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPR  401 (705)
T ss_pred             CCC--ceEEEEccchhhhh------------hhCCCcccccCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHH
Confidence            998  599999 5443332            22111 1123568999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||+++. .|++|.+++|+++++...+ +.++++++...+...+.+ ..+.+++++.++|+.|+.|..|+++++||+|++
T Consensus       402 eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~-~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~  478 (705)
T PRK06060        402 EVERLII-EDEAVAEAAVVAVRESTGA-STLQAFLVATSGATIDGS-VMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPN  478 (705)
T ss_pred             HHHHHHH-hCCCeeEEEEEeecCccCC-eeEEEEEEeccccCcChH-HHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcc
Confidence            9999997 8999999999999988777 889999998765444433 334566667889999999999999999999999


Q ss_pred             cHHHHHHHHHHHH
Q 010854          478 NKLLRRVLRDQIK  490 (499)
Q Consensus       478 GKv~r~~l~~~~~  490 (499)
                      ||++|++|++.+.
T Consensus       479 GKidr~~L~~~~~  491 (705)
T PRK06060        479 GKLVRGALRKQSP  491 (705)
T ss_pred             hhhHHHHHHhhcc
Confidence            9999999998653

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.8e-61  Score=431.94  Aligned_cols=461  Identities=20%  Similarity=0.239  Sum_probs=393.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|.+.+||..+|++++||++++|+++|.--|+....++.+..+.+.++.+|.+... ..++..+.+++....++.
T Consensus        75 i~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~t  153 (542)
T COG1021          75 IKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPT  153 (542)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCc
Confidence            6899999999999999999999999999999999899999999999999999999998764 455666777777777777


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      .+.++...+..       .....+..+....    .......+.+++++|++..+.||||.||.++.+|..+..++....
T Consensus       154 lr~v~v~ge~~-------~~~~~~~~~~~~a----~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSa  222 (542)
T COG1021         154 LRHVIVAGEAE-------HPSVLEAALCHPA----GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASA  222 (542)
T ss_pred             ceEEEEccCCC-------CcchhhhhhhCcc----ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehh
Confidence            66666552221       1222233222221    122233456678999999999999999999999999999988888


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      .-+++...++.++.+|..|.+-+..  .++.+++|+++++.+ +.+++..+.+|+++++|+...+|++...|++..+...
T Consensus       223 EiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~  301 (542)
T COG1021         223 EICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER  301 (542)
T ss_pred             hhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc
Confidence            8899999999999999999999875  999999999999987 6788999999999999999999999999999999999


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~~~  318 (499)
                      .++++||.+-+||..+++...+.+...+ +|.+.+.|||.|.-..++-.......-..+-|+|+ |.-+++|+|++|+++
T Consensus       302 ~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv  380 (542)
T COG1021         302 ADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPV  380 (542)
T ss_pred             CCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCC
Confidence            9999999999999999999999998776 89999999999976655433332333446778886 788999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      ++|+  +|++-+ +|..+.+  +++.++.+...|      +.+|||+|||++++|++|||.+.||.||+|+.+|++|-.+
T Consensus       381 ~pGE--~G~LltRGPYTirG--Yyrap~HNa~aF------~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAe  450 (542)
T COG1021         381 APGE--VGELLTRGPYTIRG--YYRAPEHNARAF------DADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAE  450 (542)
T ss_pred             CCCC--cceeeecCCeeeee--eccCchhhhhcc------CcCCceecCceeEecCCceEEEEeeehhhhccccchhhHH
Confidence            9999  599999 6666665  333444444444      5789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      |||+.|+ .||.|.++++++.+|+-.| ++.|+||+.++.. .+..++++++++   ..++.|++|.+|.+++++|.|+-
T Consensus       451 EvEn~LL-~HP~V~~AAlVampDelLG-EksCAfiv~~~~~-~~~~qlr~~L~~---~GlAa~K~PDrie~v~~~P~T~V  524 (542)
T COG1021         451 EVENLLL-RHPAVHDAALVAMPDELLG-EKSCAFIVVKEPP-LRAAQLRRFLRE---RGLAAFKLPDRIEFVDSLPLTAV  524 (542)
T ss_pred             HHHHHHh-hCchhhhhhhhcCchhhcC-cceeEEEEecCCC-CCHHHHHHHHHH---cchhhhcCCcceeecccCCCccc
Confidence            9999998 9999999999999999999 9999999998753 577888888876   58999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhh
Q 010854          478 NKLLRRVLRDQIKHE  492 (499)
Q Consensus       478 GKv~r~~l~~~~~~~  492 (499)
                      |||+++.|++++...
T Consensus       525 GKIdKk~Lr~~l~~~  539 (542)
T COG1021         525 GKIDKKALRRRLASR  539 (542)
T ss_pred             ccccHHHHHHHhhhh
Confidence            999999999988654

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-59  Score=483.10  Aligned_cols=465  Identities=21%  Similarity=0.249  Sum_probs=360.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+|+++....      .+.+.......
T Consensus        72 i~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~  145 (562)
T PRK05677         72 LKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAH------LAEKVLPKTGV  145 (562)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhh------hHHHhhhccCc
Confidence            679999999999999999999999999999999999999999999999999999999764321      11111111111


Q ss_pred             ceEEecccCCCC-------------------CCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 010854           82 KAIVLPAIGNDV-------------------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE  142 (499)
Q Consensus        82 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  142 (499)
                      ..+++.......                   .....+....+.+.+.....    .........++++++++|||||||.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~  221 (562)
T PRK05677        146 KHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGV  221 (562)
T ss_pred             ceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCC
Confidence            111111100000                   00001122334444433221    1111233467999999999999999


Q ss_pred             CceEEecchhhHHHhhhcceec--cCcC-CcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCC
Q 010854          143 PKAIPWTQLSSIRCTAEGWAHI--DLKV-GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  218 (499)
Q Consensus       143 pk~v~~s~~~~~~~~~~~~~~~--~~~~-~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  218 (499)
                      ||+|+++|+++...+......+  .+.. .+.+++.+|++|.+++.. ++.++..|++.++.+...++..+++.|+++++
T Consensus       222 PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  301 (562)
T PRK05677        222 AKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKF  301 (562)
T ss_pred             CcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCc
Confidence            9999999999887665443332  2333 467889999999999864 77788889888877656678899999999999


Q ss_pred             eEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccc
Q 010854          219 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  298 (499)
Q Consensus       219 t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  298 (499)
                      |++.++|+++..+.........+++++|.+++||+++++++.+.+...+ ++.+++.||+||++..+..... .....++
T Consensus       302 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~  379 (562)
T PRK05677        302 SGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGT  379 (562)
T ss_pred             eEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCc
Confidence            9999999999999876554555678999999999999999988887665 7899999999998876554433 2334578


Q ss_pred             ccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceE
Q 010854          299 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  377 (499)
Q Consensus       299 ~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l  377 (499)
                      +|.|+++++++|+|+++++++.|+  .|||++ ++..+.+  ++.+++.+...|      .+++||+|||+|+++++|++
T Consensus       380 vG~~~~~~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~~------~~~g~~~TGDlg~~~~~G~l  449 (562)
T PRK05677        380 IGIPVPSTLCKVIDDDGNELPLGE--VGELCVKGPQVMKG--YWQRPEATDEIL------DSDGWLKTGDIALIQEDGYM  449 (562)
T ss_pred             cCccCCCCEEEEECCCCCCCCCCC--CeEEEEecCccchh--hcCCchhhhhcc------CCCCcccccceEEECCCCcE
Confidence            999999999999999999999998  599999 5544432  233333333333      34679999999999999999


Q ss_pred             EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc
Q 010854          378 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       378 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  457 (499)
                      ++.||.+|+|+++|.+|+|.+||++|. .+++|.+++|++++++..+ +.++++++..++...+.+++.++    +++.|
T Consensus       450 ~i~GR~~d~i~~~G~~i~p~eiE~~l~-~~~~v~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l  523 (562)
T PRK05677        450 RIVDRKKDMILVSGFNVYPNELEDVLA-ALPGVLQCAAIGVPDEKSG-EAIKVFVVVKPGETLTKEQVMEH----MRANL  523 (562)
T ss_pred             EEEecCcCeEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCccCC-ceEEEEEEeCCCCCCCHHHHHHH----HHHhh
Confidence            999999999999999999999999996 9999999999999988777 88899998876655666666665    45678


Q ss_pred             CCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          458 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       458 ~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      ++|+.|..++++++||+|++||++|++|++++.++..
T Consensus       524 ~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~~  560 (562)
T PRK05677        524 TGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKAG  560 (562)
T ss_pred             hhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhcc
Confidence            8999999999999999999999999999998877654

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.8e-60  Score=494.20  Aligned_cols=465  Identities=15%  Similarity=0.117  Sum_probs=343.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC-C
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~   80 (499)
                      +++||+|+|+++|+++|++++|||+++|+++||+++.++++++.+++++++++++|++.+...      .+....... .
T Consensus       101 v~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~  174 (666)
T PLN02614        101 VKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKIS------ELFKTCPNSTE  174 (666)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHH------HHHHhcccccc
Confidence            689999999999999999999999999999999999999999999999999999999874321      111111111 1


Q ss_pred             CceEEecccCCCCCC-----CCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           81 LKAIVLPAIGNDVGI-----PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      ....++.........     .......++++++......    ........++|+++|+|||||||.||||++||+++..
T Consensus       175 ~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~  250 (666)
T PLN02614        175 YMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGK----QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVT  250 (666)
T ss_pred             cceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccC----CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHH
Confidence            111122111110000     0011124566665543210    0111224579999999999999999999999999988


Q ss_pred             Hhhhccee-----ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 CTAEGWAH-----IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~~~~~~~~-----~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      .+......     .++.++|++++++|++|.++....+.+++.|+++++.+  .++..+++.|++++||+++++|++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~  328 (666)
T PLN02614        251 LIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDR  328 (666)
T ss_pred             HHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHH
Confidence            76654433     25788999999999999998866666788999998875  367899999999999999999999998


Q ss_pred             HHccCCC---------------------------------Cc-----------ccc-cceeEEEeecCCCChhhHHHHHh
Q 010854          231 WRNTNCL---------------------------------EG-----------LDW-TKIRSFASTGETSNVDDDLWLSS  265 (499)
Q Consensus       231 l~~~~~~---------------------------------~~-----------~~l-~~l~~i~~~G~~l~~~~~~~~~~  265 (499)
                      +.+....                                 ..           ..+ +++|.+++||+++++.+. .+..
T Consensus       329 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-~~~~  407 (666)
T PLN02614        329 VYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE-SFLR  407 (666)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-HHHH
Confidence            7642100                                 00           011 589999999999998764 4445


Q ss_pred             hcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CC--CCCCCCCCCcceeeEe-ccccccccccc
Q 010854          266 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC--GVPYPDDQPCVGEVGL-FPLYLGASDRL  341 (499)
Q Consensus       266 ~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~--g~~~~~g~~~~Gei~v-~~~~~~~~~~~  341 (499)
                      .+.++.+++.||+||+++..+..........+++|+|+|+++++|+| ++  +.+++.|+  .|||+| ++..+.+  ++
T Consensus       408 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~--~GEl~vrGp~v~~G--Y~  483 (666)
T PLN02614        408 VVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTP--RGEICIRGKTLFSG--YY  483 (666)
T ss_pred             HhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCC--CceEEEcCCccccc--cc
Confidence            55568899999999987644433332223468999999999999997 33  46788888  499999 6665543  34


Q ss_pred             ccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEeCC
Q 010854          342 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSP  420 (499)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~  420 (499)
                      .+++.+...|.       ++||+|||+|++|+||+|+|+||.||+||. +|++|+|.+||++|. .||+|.+++|++...
T Consensus       484 ~~pe~T~~~f~-------dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~~~V~g~~~  555 (666)
T PLN02614        484 KREDLTKEVLI-------DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG-EVQAVDSVWVYGNSF  555 (666)
T ss_pred             CCHHHhhhhhc-------cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh-cCCCeeEEEEEecCC
Confidence            44444444342       479999999999999999999999999995 799999999999996 999999999998753


Q ss_pred             CCCCceEEEEEEEecCCC----------CCC------HHHHHHHHHHHH-----HhhcCCceeeeEEEEcCC-C-----C
Q 010854          421 AGGGPEVLVIFVVLKKGF----------TSQ------PDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPE-F-----P  473 (499)
Q Consensus       421 ~~~~~~~~~~~v~~~~~~----------~~~------~~~l~~~~~~~~-----~~~l~~~~~p~~~~~~~~-i-----P  473 (499)
                      .    ..++|+|++....          ..+      ..++++.+.+.+     +++|+.|.++++|.++++ +     -
T Consensus       556 ~----~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~  631 (666)
T PLN02614        556 E----SFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDL  631 (666)
T ss_pred             c----ceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCc
Confidence            2    5688999876421          101      122333333333     467999999999998863 3     3


Q ss_pred             CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      +|+++|+.|..+.+.|++++++
T Consensus       632 lTpt~K~kR~~i~~~y~~~i~~  653 (666)
T PLN02614        632 LTPTFKKKRPQLLKYYQSVIDE  653 (666)
T ss_pred             CCHhhhhhHHHHHHHHHHHHHH
Confidence            7999999999999999998875

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-59  Score=481.72  Aligned_cols=444  Identities=18%  Similarity=0.163  Sum_probs=355.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+|++....      ..+.........
T Consensus        90 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  163 (537)
T PRK13382         90 IGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQ  163 (537)
T ss_pred             CCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccc
Confidence            67999999999999999999999999999999999999999999999999999999987532      111221111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++.....       .....++++......     .  .....+++.++++|||||||.||+|.++|.++........
T Consensus       164 ~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~  229 (537)
T PRK13382        164 ATRIVAWTDE-------DHDLTVEVLIAAHAG-----Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAIL  229 (537)
T ss_pred             cceEEEecCC-------cccccHHHHhhccCc-----C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHH
Confidence            1111111010       112344444432211     0  1112467899999999999999999999988887777766


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC--Cc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~  239 (499)
                      ..+.+..+++++...|++|.+++..++.++..|+++++.. .++++.+++.|+++++|++.++|++++.|++....  ..
T Consensus       230 ~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  308 (537)
T PRK13382        230 DRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNR  308 (537)
T ss_pred             HhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhccc
Confidence            6677889999999999999999877889999999988875 66889999999999999999999999999876432  23


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      .+++++|.++++|+++++++...+.+.+ +..+++.||+||++..+..+........+++|+|++++.++|+|+++++++
T Consensus       309 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~  387 (537)
T PRK13382        309 YSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVP  387 (537)
T ss_pred             CCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCC
Confidence            4567899999999999999999888776 567999999999987655443333345679999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  .||+++ ++..+.++.    ++.+..        ..++||+|||+++++++|++++.||.||+||++|++|+|.+
T Consensus       388 ~g~--~GEl~v~g~~~~~gY~----~~~~~~--------~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~e  453 (537)
T PRK13382        388 TGE--VGTIFVRNDTQFDGYT----SGSTKD--------FHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIE  453 (537)
T ss_pred             CCC--eeEEEEEcCCcccCcc----ccchhh--------ccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHH
Confidence            998  599999 655554321    111111        12479999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. .+|+|.+++|++.+++..+ +.++++|++.++...+.+++.+    ++++.|+.|+.|..+++++++|+|++|
T Consensus       454 IE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP~t~~g  527 (537)
T PRK13382        454 VEKTLA-THPDVAEAAVIGVDDEQYG-QRLAAFVVLKPGASATPETLKQ----HVRDNLANYKVPRDIVVLDELPRGATG  527 (537)
T ss_pred             HHHHHH-hCCCEeeEEEEccCccccC-CEEEEEEEECCCCCCCHHHHHH----HHHHhccCCCCCcEEEEeccCCCCCCC
Confidence            999996 8999999999999988777 8899999987765445444444    466789999999999999999999999


Q ss_pred             HHHHHHHHH
Q 010854          479 KLLRRVLRD  487 (499)
Q Consensus       479 Kv~r~~l~~  487 (499)
                      |++|++|++
T Consensus       528 K~~r~~L~~  536 (537)
T PRK13382        528 KILRRELQA  536 (537)
T ss_pred             CCcHHhhCC
Confidence            999999864

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5e-59  Score=478.36  Aligned_cols=454  Identities=22%  Similarity=0.251  Sum_probs=363.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++|+++...      ..+....... .
T Consensus        72 ~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~-~  144 (537)
T PLN02246         72 IRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDD-G  144 (537)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcC-C
Confidence            68999999999999999999999999999999999999999999999999999999987532      1111111111 1


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      . .++.....      ......+.++.....     .........++++++++|||||||.||+|+++|+++...+....
T Consensus       145 ~-~~i~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~  212 (537)
T PLN02246        145 V-TVVTIDDP------PEGCLHFSELTQADE-----NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  212 (537)
T ss_pred             c-eEEEeCCC------CCCceeHHHHhcCCC-----CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHh
Confidence            1 11211111      122344555443221     11122335678999999999999999999999999987766543


Q ss_pred             e----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          162 A----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       162 ~----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      .    .+.++++|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++...
T Consensus       213 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  291 (537)
T PLN02246        213 DGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP-KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV  291 (537)
T ss_pred             hccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc
Confidence            2    467899999999999999999866 778899999999997 4678899999999999999999999999988766


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC----CCCCccccccccCCCceEEEEC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~i~d  312 (499)
                      ....+++++|.++++|+.+++++.+.+.+.+++..+++.||+||++.++..+..    ......+++|+|+++++++|+|
T Consensus       292 ~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d  371 (537)
T PLN02246        292 VEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD  371 (537)
T ss_pred             ccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEec
Confidence            666678899999999999999999999988878889999999999865443211    1123456899999999999999


Q ss_pred             -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                       +++++++.|+.  |||++ ++..+.+  ++.++..+...+      ..++||+|||+++++++|++++.||.+|+||.+
T Consensus       372 ~~~~~~~~~g~~--Gel~v~g~~~~~G--Y~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~  441 (537)
T PLN02246        372 PETGASLPRNQP--GEICIRGPQIMKG--YLNDPEATANTI------DKDGWLHTGDIGYIDDDDELFIVDRLKELIKYK  441 (537)
T ss_pred             CCCCCcCCCCCc--eEEEEECCchhcc--ccCCchhhhhcc------cCCCCeeecceEEEeCCCeEEEEecccceEEEC
Confidence             68999999984  99999 5554433  222222222222      346799999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.+||+++. .+|+|.+++|++.+++..+ +.++++++..++...+.+++.++    ++++|+.|+.|.++++++
T Consensus       442 G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~~~  515 (537)
T PLN02246        442 GFQVAPAELEALLI-SHPSIADAAVVPMKDEVAG-EVPVAFVVRSNGSEITEDEIKQF----VAKQVVFYKRIHKVFFVD  515 (537)
T ss_pred             CEEECcHHHHHHHH-hCCCeeEEEEEcccCccCC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhCcCccccceEEEec
Confidence            99999999999996 8999999999999888777 88999999887655555555444    667899999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHh
Q 010854          471 EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++|+|++||++|++|+++++.
T Consensus       516 ~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        516 SIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             cCCCCCcchhhHHHHHHHHhc
Confidence            999999999999999988753

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.9e-59  Score=479.95  Aligned_cols=463  Identities=20%  Similarity=0.223  Sum_probs=366.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+|+++....      .+.........
T Consensus        58 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~  131 (546)
T PRK08314         58 VRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRL  131 (546)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCc
Confidence            679999999999999999999999999999999999999999999999999999999875431      11111111111


Q ss_pred             ceEEecccCCC------------------CCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010854           82 KAIVLPAIGND------------------VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP  143 (499)
Q Consensus        82 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p  143 (499)
                      ..++.......                  .......+...|++......      ........++++++++|||||||.|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGtTG~P  205 (546)
T PRK08314        132 RHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL------APPPHTAGPDDLAVLPYTSGTTGVP  205 (546)
T ss_pred             ceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccC------CCCCCCCCCCCeEEEEeCCCCCCCC
Confidence            11111100000                  00001123345665554321      1122345678999999999999999


Q ss_pred             ceEEecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEe
Q 010854          144 KAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG  222 (499)
Q Consensus       144 k~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~  222 (499)
                      |+|.++|+++...+......+++..+|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|++.
T Consensus       206 K~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~i~~~~~t~~~  284 (546)
T PRK08314        206 KGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP-RWDREAAARLIERYRVTHWT  284 (546)
T ss_pred             cEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC-CCCHHHHHHHHHHhcCceec
Confidence            9999999999998887777788899999999999999999865 889999999999997 45788899999999999999


Q ss_pred             cchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccccccc
Q 010854          223 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA  302 (499)
Q Consensus       223 ~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~  302 (499)
                      ++|+++..++........+++++|.++++|+++++++.+++...+ +.++++.||+||++......... ....+++|.|
T Consensus       285 ~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~  362 (546)
T PRK08314        285 NIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD-RPKLQCLGIP  362 (546)
T ss_pred             ccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCc-CCCCCccCcc
Confidence            999999999887665666788999999999999999999988776 68899999999998755443322 2345789999


Q ss_pred             CCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEe
Q 010854          303 TMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQ  380 (499)
Q Consensus       303 ~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~  380 (499)
                      +++++++|+| +++.+++.|+  .||+++ ++..+.+  ++.++..+...|..   ..+.+||+|||+|+++++|++++.
T Consensus       363 ~~g~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~f~~---~~~~~~~~TGDl~~~~~~g~l~~~  435 (546)
T PRK08314        363 TFGVDARVIDPETLEELPPGE--VGEIVVHGPQVFKG--YWNRPEATAEAFIE---IDGKRFFRTGDLGRMDEEGYFFIT  435 (546)
T ss_pred             cCCeEEEEEeCCCCcCCCCCC--ceEEEEECCchhcc--ccCChhHhhhhhhh---cCCCceEecCCEEEEcCCCcEEEE
Confidence            9999999999 6799999998  599999 5443332  22223322222221   235579999999999999999999


Q ss_pred             cccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC--CCHHHHHHHHHHHHHhhcC
Q 010854          381 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLN  458 (499)
Q Consensus       381 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~~~~~l~  458 (499)
                      ||.||+++++|++|+|.+||+++. .+|+|.+++|++.++...+ +.+++++++.++..  .+.+    .+++++++.|+
T Consensus       436 GR~~d~i~~~G~~v~~~eIE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~----~l~~~~~~~l~  509 (546)
T PRK08314        436 DRLKRMINASGFKVWPAEVENLLY-KHPAIQEACVIATPDPRRG-ETVKAVVVLRPEARGKTTEE----EIIAWAREHMA  509 (546)
T ss_pred             ecchhhEEeCCEEECHHHHHHHHH-hCcchheEEEEeCCCcccC-ceeEEEEEECCCCCCCCCHH----HHHHHHHHhcc
Confidence            999999999999999999999996 8999999999999988777 88999999877543  2233    44555667899


Q ss_pred             CceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          459 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       459 ~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +|+.|..++++++||+|.+||++|+.|++..+..
T Consensus       510 ~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~  543 (546)
T PRK08314        510 AYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR  543 (546)
T ss_pred             cCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence            9999999999999999999999999998876654

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-59  Score=475.98  Aligned_cols=459  Identities=20%  Similarity=0.202  Sum_probs=359.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+++++..+++.++++.+++++.+.      +....+......
T Consensus        61 ~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~  134 (539)
T PRK07008         61 VEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPN  134 (539)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999987542      222222222222


Q ss_pred             c-eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHh--h
Q 010854           82 K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT--A  158 (499)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~--~  158 (499)
                      . .++........... .....+++++......     ........+++++.++|||||||.||+|+++|+++....  .
T Consensus       135 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~  208 (539)
T PRK07008        135 VKGWVAMTDAAHLPAG-STPLLCYETLVGAQDG-----DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGA  208 (539)
T ss_pred             ceEEEEEccCCccccC-CcccccHHHHhcccCC-----CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHh
Confidence            1 11111111111111 1234566776543221     111223457889999999999999999999999986432  2


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      .....++++++|+++...|++|.+++...+.++..|+++++.+..++++.+++.++++++|++.++|+++..|++.....
T Consensus       209 ~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~  288 (539)
T PRK07008        209 ALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA  288 (539)
T ss_pred             hcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc
Confidence            33346778899999999999998887667888999999999876678899999999999999999999999999877666


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------CCccccccccCCCceE
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGL  308 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~  308 (499)
                      ..+++++|.++++|+++++.+.+.++..+ +..+++.||+||++.....+....          .....++|+|+|++++
T Consensus       289 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~  367 (539)
T PRK07008        289 GLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDM  367 (539)
T ss_pred             CCCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEE
Confidence            67788999999999999999999988776 788999999999986543332110          0124678999999999


Q ss_pred             EEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCee
Q 010854          309 VILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM  387 (499)
Q Consensus       309 ~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i  387 (499)
                      +|+|+++++++.+...+|||++ ++....+  +..++.        .+..  ++||+|||++++++||++++.||.+|++
T Consensus       368 ~i~d~~~~~~~~~~~~~Gei~v~g~~~~~g--y~~~~~--------~~~~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i  435 (539)
T PRK07008        368 KIVGDDGRELPWDGKAFGDLQVRGPWVIDR--YFRGDA--------SPLV--DGWFPTGDVATIDADGFMQITDRSKDVI  435 (539)
T ss_pred             EEECCCCCccCCCCCcceEEEEeCCccchh--hcCChh--------hhhc--CCCcccCceEEEcCCCcEEEeecccCEE
Confidence            9999999888765323599999 4333221  111110        1111  4699999999999999999999999999


Q ss_pred             eeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEE
Q 010854          388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK  467 (499)
Q Consensus       388 ~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~  467 (499)
                      +.+|.+|+|.+||+++. .+|.|.++++++.++...+ +.++++|+..++...+.+++.++    ++++|++|+.|..++
T Consensus       436 ~~~G~~v~p~eIE~~l~-~~p~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~P~~i~  509 (539)
T PRK07008        436 KSGGEWISSIDIENVAV-AHPAVAEAACIACAHPKWD-ERPLLVVVKRPGAEVTREELLAF----YEGKVAKWWIPDDVV  509 (539)
T ss_pred             EeCCeEEcHHHHHHHHH-hCCceeEEEEEecCCchhc-cceEEEEEeCCCCccCHHHHHHH----HHhhcccccCCeEEE
Confidence            99999999999999996 8999999999999987777 78888888776655555555555    556889999999999


Q ss_pred             EcCCCCCCCCcHHHHHHHHHHHHh
Q 010854          468 VVPEFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       468 ~~~~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++++||+|++||++|++|++++.+
T Consensus       510 ~v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        510 FVDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             EecCCCCCCccceeHHHHHHHHHh
Confidence            999999999999999999998875

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-59  Score=473.65  Aligned_cols=435  Identities=20%  Similarity=0.229  Sum_probs=349.3

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCc
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK   82 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (499)
                      .+||+|+|+++|++++++++|||+++|++++|+++.++++++.++++.++++.+|++......      +.   . . . 
T Consensus        48 ~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~------~~---~-~-~-  115 (487)
T PRK07638         48 SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLND------LP---D-E-E-  115 (487)
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccc------hh---h-c-c-
Confidence            479999999999999999999999999999999999999999999999999999998743211      10   0 0 0 


Q ss_pred             eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce
Q 010854           83 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA  162 (499)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~  162 (499)
                      ..++..             ..+.+.......     .........+++++++|||||||.||+|+++|+++...+.....
T Consensus       116 ~~~~~~-------------~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~  177 (487)
T PRK07638        116 GRVIEI-------------DEWKRMIEKYLP-----TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH  177 (487)
T ss_pred             ceEEEe-------------hhhhhhhhhccc-----cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH
Confidence            011110             011111111110     11111223577899999999999999999999999888887777


Q ss_pred             eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccc
Q 010854          163 HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l  242 (499)
                      .++++.+|+++...|++|..++..++.+++.|+++++.+ .+++..+++.++++++|++.++|+++..|.+...   . .
T Consensus       178 ~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~  252 (487)
T PRK07638        178 DFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-I  252 (487)
T ss_pred             hcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-C
Confidence            788999999999999999988777889999999999886 5688999999999999999999999999988732   1 3


Q ss_pred             cceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCCC
Q 010854          243 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ  322 (499)
Q Consensus       243 ~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~  322 (499)
                      .+.+.++++|+.++.+...++...+++..+++.||+||++..+............++|.|++++.++|+|+.|.+++.|+
T Consensus       253 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~  332 (487)
T PRK07638        253 ENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGE  332 (487)
T ss_pred             CceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCC
Confidence            45566778888999999999998888899999999999997665554434445679999999999999999999999998


Q ss_pred             CcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHH
Q 010854          323 PCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER  401 (499)
Q Consensus       323 ~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~  401 (499)
                        .|||+| ++..+.+  ++.++..+..       ...++||+|||++++|++|++++.||.+|+||++|.+|+|.+||+
T Consensus       333 --~Gel~v~~~~~~~g--y~~~~~~~~~-------~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~  401 (487)
T PRK07638        333 --IGTVYVKSPQFFMG--YIIGGVLARE-------LNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIES  401 (487)
T ss_pred             --CeEEEEecccceee--ecCCHHHHhh-------hccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHH
Confidence              599999 4443332  2222221111       134679999999999999999999999999999999999999999


Q ss_pred             HHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHH
Q 010854          402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL  481 (499)
Q Consensus       402 ~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~  481 (499)
                      ++. .+|+|.+++|++.+++..+ +.++++++.    ..+.+++.+    ++.++++.|+.|..++++++||+|++||++
T Consensus       402 ~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~----~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~  471 (487)
T PRK07638        402 VLH-EHPAVDEIVVIGVPDSYWG-EKPVAIIKG----SATKQQLKS----FCLQRLSSFKIPKEWHFVDEIPYTNSGKIA  471 (487)
T ss_pred             HHH-hCCCeeeEEEEecCchhcC-CeeEEEEEC----CCCHHHHHH----HHHHHhhcccCCcEEEEecccCCCCccccc
Confidence            997 8999999999999988777 788888764    234444444    456788899999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 010854          482 RRVLRDQIKHEL  493 (499)
Q Consensus       482 r~~l~~~~~~~~  493 (499)
                      |++|++++.++.
T Consensus       472 r~~L~~~~~~~~  483 (487)
T PRK07638        472 RMEAKSWIENQE  483 (487)
T ss_pred             HHHHHHHHhccc
Confidence            999998887653

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=8.5e-59  Score=478.45  Aligned_cols=460  Identities=16%  Similarity=0.151  Sum_probs=351.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc-CC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-AP   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...       ........ ..
T Consensus        63 ~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~  135 (552)
T PRK09274         63 IGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-------LARRLFGWGKP  135 (552)
T ss_pred             CCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-------HHHHHhccCcc
Confidence            68999999999999999999999999999999999999999999999999999999865210       00000000 00


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ....++.....     .......+.++......    .........++++++++|||||||.||+|+++|+++...+...
T Consensus       136 ~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~  206 (552)
T PRK09274        136 SVRRLVTVGGR-----LLWGGTTLATLLRDGAA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEAL  206 (552)
T ss_pred             chhheeccccc-----cccCCccHHHhcccCcc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHH
Confidence            11111111100     01122345554422111    1122233567899999999999999999999999999888877


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC------CCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~------~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      ...+++.++++.+..+|++|.+++       ..|+++++.+.      ..+++.+++.|+++++|+++++|++++.|.+.
T Consensus       207 ~~~~~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  279 (552)
T PRK09274        207 REDYGIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRY  279 (552)
T ss_pred             HHHhCCCCCceeeeccCHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHH
Confidence            777889999999999998876443       45777776542      34678999999999999999999999999987


Q ss_pred             CCCCcccccceeEEEeecCCCChhhHHHHHhhcc-cCceeccccccceeeeeecCCCC---------CCCccccccccCC
Q 010854          235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATM  304 (499)
Q Consensus       235 ~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~---------~~~~~~~~g~~~~  304 (499)
                      ....+.+++++|.++++|+++++++.+.+.+.++ ++++++.||+||++.+.......         ......++|+|+|
T Consensus       280 ~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~  359 (552)
T PRK09274        280 GEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVD  359 (552)
T ss_pred             hhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCC
Confidence            6666678899999999999999999999998876 37899999999998755433211         1112347899999


Q ss_pred             CceEEEECC---------CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecC
Q 010854          305 TAGLVILDE---------CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       305 ~~~~~i~d~---------~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  374 (499)
                      +++++|+|.         ++++++.|+  +|||+| ++..+.+  ++.+++.+...+...  ..+..||+|||+|++|++
T Consensus       360 ~~~~~ivd~~~~~~~~~~~~~~~~~g~--~Gel~v~g~~~~~G--Y~~~~~~t~~~~~~~--~~g~~w~~TGDlg~~d~d  433 (552)
T PRK09274        360 GVEVRIIAISDAPIPEWDDALRLATGE--IGEIVVAGPMVTRS--YYNRPEATRLAKIPD--GQGDVWHRMGDLGYLDAQ  433 (552)
T ss_pred             CceEEEEeccccccccccccccCCCCC--eeEEEEecCccccc--ccCChHHhhhhhccc--CCCCcEEEcCCEEEEccC
Confidence            999999983         567888888  599999 5544432  222333222221100  012249999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  454 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  454 (499)
                      |+++++||.||+|+++|++|+|.+||++|. .||+|.+++|++++++. + +.++++|++.++...+.+++.+.+++.+.
T Consensus       434 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~  510 (552)
T PRK09274        434 GRLWFCGRKAHRVETAGGTLYTIPCERIFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEPGVACSKSALYQELRALAA  510 (552)
T ss_pred             CcEEEEeccCCeEEECCEEECcHHHHHHHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccCccccchHHHhhhhHHHHH
Confidence            999999999999999999999999999996 89999999999998753 4 78889999888766666678888877664


Q ss_pred             hhcCCceeeeEEEEcCCCCCC--CCcHHHHHHHHHHHHhhhh
Q 010854          455 SKLNPLFKVSLVKVVPEFPRT--ASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       455 ~~l~~~~~p~~~~~~~~iP~t--~~GKv~r~~l~~~~~~~~~  494 (499)
                       ....++.|..++++++||+|  ++|||+|++|++++++++.
T Consensus       511 -~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~~  551 (552)
T PRK09274        511 -AHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQLK  551 (552)
T ss_pred             -hcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhhc
Confidence             34556788899999999999  7999999999999887653

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.2e-59  Score=484.67  Aligned_cols=464  Identities=19%  Similarity=0.133  Sum_probs=341.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      +++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.......+ 
T Consensus        99 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~  172 (660)
T PLN02861         99 VNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSS  172 (660)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCC
Confidence            78999999999999999999999999999999999999999999999999999999976432      11111112111 


Q ss_pred             CceEEecccCCCCC-----CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           81 LKAIVLPAIGNDVG-----IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        81 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      ....++........     ........++.++......     ........++|+++|+|||||||.||||++||++++.
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~  247 (660)
T PLN02861        173 NLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA  247 (660)
T ss_pred             CCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHH
Confidence            11222221111000     0001123456666543321     0111234679999999999999999999999999988


Q ss_pred             Hhhhcceecc-----CcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 CTAEGWAHID-----LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~~~~~~~~~~-----~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      .+......++     +.++|++++++|++|.++....+.+++.|+++++..  .++..+++.|++++||+++++|++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        248 EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            7765544332     467899999999999999876566899999998874  467899999999999999999999998


Q ss_pred             HHccC-------------------------------------CCCcc-------cc-cceeEEEeecCCCChhhHHHHHh
Q 010854          231 WRNTN-------------------------------------CLEGL-------DW-TKIRSFASTGETSNVDDDLWLSS  265 (499)
Q Consensus       231 l~~~~-------------------------------------~~~~~-------~l-~~l~~i~~~G~~l~~~~~~~~~~  265 (499)
                      +.+..                                     .....       .+ +++|.+++||+++++++.+++ .
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~-~  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFL-R  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH-H
Confidence            86410                                     00000       11 579999999999999976544 4


Q ss_pred             hcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC--CCC-CCCCCCCCcceeeEe-ccccccccccc
Q 010854          266 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-FPLYLGASDRL  341 (499)
Q Consensus       266 ~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d--~~g-~~~~~g~~~~Gei~v-~~~~~~~~~~~  341 (499)
                      .+....+++.||+||+++..+..........+++|+|+|+++++|+|  +.| .....+.  .|||+| ++..+.+  ++
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~--~GEi~vrGp~v~~G--Y~  480 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVP--RGEICLRGNTLFSG--YH  480 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCC--ceeEEEcCCccccc--cc
Confidence            55345799999999987654433322223468999999999999997  444 2333444  499999 6655553  34


Q ss_pred             ccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEeCC
Q 010854          342 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSP  420 (499)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~  420 (499)
                      .+++.+...|.       ++||+|||+|++|+||+|+|+||.||+||. +|++|+|.+||+++. .||.|.+++|++.+ 
T Consensus       481 ~~pe~T~~~f~-------dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~-  551 (660)
T PLN02861        481 KRQDLTEEVLI-------DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNS-  551 (660)
T ss_pred             CCHHHHHhhhh-------ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecC-
Confidence            44554444442       579999999999999999999999999996 899999999999996 89999999999876 


Q ss_pred             CCCCceEEEEEEEecCCC----------CCCHH------HHHHHHHHHHHh-----hcCCceeeeEEEEcC-CC-----C
Q 010854          421 AGGGPEVLVIFVVLKKGF----------TSQPD------KLKMIFSKAIQS-----KLNPLFKVSLVKVVP-EF-----P  473 (499)
Q Consensus       421 ~~~~~~~~~~~v~~~~~~----------~~~~~------~l~~~~~~~~~~-----~l~~~~~p~~~~~~~-~i-----P  473 (499)
                        .+ +.++|+|++....          ..+..      ++...+.+.+++     .+..|.+++++.+++ ++     .
T Consensus       552 --~~-~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~  628 (660)
T PLN02861        552 --FE-SFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDL  628 (660)
T ss_pred             --Cc-ceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCc
Confidence              23 7789999876320          01111      122333333432     589999999998865 55     7


Q ss_pred             CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      +|+++|+.|+.+.+.|++++++
T Consensus       629 lT~t~K~~R~~i~~~y~~~I~~  650 (660)
T PLN02861        629 ITPTFKLKRPQLLKYYKDCIDQ  650 (660)
T ss_pred             CCHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999998875

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=9.7e-59  Score=489.91  Aligned_cols=457  Identities=19%  Similarity=0.199  Sum_probs=344.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|++.+.........    .......
T Consensus       252 ~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~  327 (718)
T PRK08043        252 SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQ  327 (718)
T ss_pred             cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhcc
Confidence            478999999999999999999999999999999999999999999999999999999876432110000    0001111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHH--hcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ...+......        ....+.+.  ......  .. ........++|+++++|||||||.||||+++|.++...+..
T Consensus       328 ~~~i~~~~~~--------~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~  396 (718)
T PRK08043        328 VRWVYLEDLK--------DDVTTADKLWIFAHLL--MP-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQ  396 (718)
T ss_pred             ccEEEhhhhh--------hhcchhHHHHHHHHHh--CC-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHH
Confidence            1111111000        00011110  000000  00 00112345799999999999999999999999999988877


Q ss_pred             cceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ....++++++|++++.+|++|.+++.. ++.+++.|+++++.+.......+.+.++++++|++.++|+++..+.+..  .
T Consensus       397 ~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~  474 (718)
T PRK08043        397 IKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--N  474 (718)
T ss_pred             HHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--C
Confidence            777778899999999999999999865 8899999999998875456677889999999999999999998886642  2


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCC
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      ..+++++|.++++|+++++++.+.+...+ ++.+++.||+||++........ .....+++|+|+|+++++++|+++.  
T Consensus       475 ~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~--  550 (718)
T PRK08043        475 PYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI--  550 (718)
T ss_pred             cccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC--
Confidence            45678999999999999999999888766 7889999999999865544332 2345689999999999999997653  


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchh-hcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVY-FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                        ++  .||+++ ++..+.++....+++..... .........++||+|||+|++|+||++++.||.||+||++|++|+|
T Consensus       551 --~~--~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p  626 (718)
T PRK08043        551 --EQ--GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSL  626 (718)
T ss_pred             --CC--ceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCH
Confidence              33  399999 55544432211111110000 0001111235899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCceeeeEEEEcCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~p~~~~~~~~iP~t  475 (499)
                      .|||+++. .++.+.++++++.+++..+ +.+++++.   +...+.+++.++    ++++ |+.|+.|..+++++++|+|
T Consensus       627 ~eIE~~l~-~~~~~~~~avv~~~~~~~g-e~~v~~~~---~~~~~~~~l~~~----~~~~~l~~~~vP~~i~~v~~lP~t  697 (718)
T PRK08043        627 EMVEQLAL-GVSPDKQHATAIKSDASKG-EALVLFTT---DSELTREKLQQY----AREHGVPELAVPRDIRYLKQLPLL  697 (718)
T ss_pred             HHHHHHHH-hCCccceEEEEEccCCCCC-ceEEEEEc---CcccCHHHHHHH----HHhcCCCcccCCceEEEecccCcC
Confidence            99999996 7887888888998888777 77777764   223455555555    4444 9999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 010854          476 ASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~~  492 (499)
                      ++||++|++|++++.+.
T Consensus       698 ~~GKi~r~~L~~~~~~~  714 (718)
T PRK08043        698 GSGKPDFVTLKSMVDEP  714 (718)
T ss_pred             CCCCcCHHHHHHHHhcc
Confidence            99999999999988664

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=6e-58  Score=468.87  Aligned_cols=460  Identities=21%  Similarity=0.224  Sum_probs=363.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++++++...      ..+.........
T Consensus        47 ~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~  120 (515)
T TIGR03098        47 LARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHD  120 (515)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccc
Confidence            57899999999999999999999999999999999999999999999999999999987432      111222222111


Q ss_pred             --ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           82 --KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                        ..+.+......  .........|+++......      ........+++++++|||||||.||+|.++|.++...+..
T Consensus       121 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~  192 (515)
T TIGR03098       121 LRTLILVGEPAHA--SEGGGESPSWPKLLALGDA------DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQS  192 (515)
T ss_pred             cceEEEecCcccc--cCCccccccHHHhhccccc------cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHH
Confidence              12222211110  0112233456665443221      1222345689999999999999999999999999988877


Q ss_pred             cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ....+.++.+|++++.+|++|.+++..++.++..|+++++.+ ..+++.+++.++++++|++.++|+++..|.+.... .
T Consensus       193 ~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~  270 (515)
T TIGR03098       193 VATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-E  270 (515)
T ss_pred             HHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-C
Confidence            777778899999999999999999988999999999999886 56789999999999999999999999999875322 2


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      .+++++|.++++|+++++.+.+.++..+++..+++.||+||++..............+++|+|+++++++|+|+++++++
T Consensus       271 ~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~  350 (515)
T TIGR03098       271 SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECA  350 (515)
T ss_pred             CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCC
Confidence            45679999999999999999999998887788999999999876544333223345689999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCC-----CCCCccccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMP-----MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK  393 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~  393 (499)
                      .|+  .||+++ ++..+.+  +..++..+...+...+     ...+.+||+|||+|+++++|++++.||.+|+|+.+|.+
T Consensus       351 ~~~--~Gel~v~g~~~~~g--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~  426 (515)
T TIGR03098       351 PGE--EGELVHRGALVAMG--YWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYR  426 (515)
T ss_pred             CCC--ceEEEEcCchhhcc--ccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEE
Confidence            988  599999 5443332  1222222222332211     12345689999999999999999999999999999999


Q ss_pred             echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854          394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP  473 (499)
Q Consensus       394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP  473 (499)
                      |+|.+||+++. .+|.|.+++|++.+++..+ +.++++++...+...+.+++.++    +.++|++++.|..++++++||
T Consensus       427 v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~~iP  500 (515)
T TIGR03098       427 VSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG-QAIVLVVTPPGGEELDRAALLAE----CRARLPNYMVPALIHVRQALP  500 (515)
T ss_pred             eCHHHHHHHHh-cCCCeeEEEEEeccCcccC-ceEEEEEEeCCCCCCCHHHHHHH----HHhhCccccCCCEEEEeccCC
Confidence            99999999997 8999999999999988877 88888888766555555555554    556899999999999999999


Q ss_pred             CCCCcHHHHHHHHH
Q 010854          474 RTASNKLLRRVLRD  487 (499)
Q Consensus       474 ~t~~GKv~r~~l~~  487 (499)
                      +|.+||++|++|++
T Consensus       501 ~t~~GK~~r~~L~~  514 (515)
T TIGR03098       501 RNANGKIDRKALAA  514 (515)
T ss_pred             CCCCCCCcHHHhcc
Confidence            99999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.4e-58  Score=462.10  Aligned_cols=407  Identities=16%  Similarity=0.141  Sum_probs=326.4

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCc
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK   82 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (499)
                      ++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++.....      ..          
T Consensus        43 ~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~----------  106 (452)
T PRK07445         43 RTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLDQLKL------SH----------  106 (452)
T ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecCcccc------cc----------
Confidence            57999999999999999999999999999999999999999999999999999998764210      00          


Q ss_pred             eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce
Q 010854           83 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA  162 (499)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~  162 (499)
                         .             ..          ..  .    ......++++++++|||||||.||+|++||+++...+.....
T Consensus       107 ---~-------------~~----------~~--~----~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~  154 (452)
T PRK07445        107 ---P-------------PP----------LP--S----QGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQR  154 (452)
T ss_pred             ---C-------------CC----------CC--c----cccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHH
Confidence               0             00          00  0    001134689999999999999999999999999887776666


Q ss_pred             eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccc
Q 010854          163 HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l  242 (499)
                      .+++.+ ++.++++|++|.+|+..++.+++.|+++++.+.. ..........++++|++.++|++++.+++..   ..++
T Consensus       155 ~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l  229 (452)
T PRK07445        155 YFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWL  229 (452)
T ss_pred             HhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhh
Confidence            566655 3567889999999998888999999999988632 1222233445788999999999999988632   3347


Q ss_pred             cceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCCCCCCCCC
Q 010854          243 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDD  321 (499)
Q Consensus       243 ~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~g~~~~~g  321 (499)
                      +++|.+++||+++++++.+.+.. . +.++++.||+||++..+....... .....++|+|.|+++++|+        .+
T Consensus       230 ~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~--------~g  299 (452)
T PRK07445        230 AQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP--------AN  299 (452)
T ss_pred             hcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc--------CC
Confidence            89999999999999998887754 3 788999999999875443322211 2235689999999999998        23


Q ss_pred             CCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHH
Q 010854          322 QPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE  400 (499)
Q Consensus       322 ~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE  400 (499)
                      +  .||++| ++..+.+            |+. . ....++||+|||++++|+||++++.||.||+||++|++|+|.+||
T Consensus       300 ~--~Gel~v~g~~~~~g------------Y~~-~-~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE  363 (452)
T PRK07445        300 Q--TGNITIQAQSLALG------------YYP-Q-ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVE  363 (452)
T ss_pred             C--cceEEEeCCccchh------------hcC-C-ccCCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHH
Confidence            4  499999 5544433            232 1 123467999999999999999999999999999999999999999


Q ss_pred             HHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHH
Q 010854          401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL  480 (499)
Q Consensus       401 ~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv  480 (499)
                      ++|. .||+|.+++|++.+++..| +.++++++..++ ..+.+++.+    +++++|+.|+.|..++++++||+|++||+
T Consensus       364 ~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~----~~~~~L~~~~~P~~i~~v~~lP~t~~GKi  436 (452)
T PRK07445        364 AAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKDP-SISLEELKT----AIKDQLSPFKQPKHWIPVPQLPRNPQGKI  436 (452)
T ss_pred             HHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCCC-CCCHHHHHH----HHHHhCCcccCCeEEEEecCCCCCCCccc
Confidence            9996 8999999999999998888 889999988755 234444444    46678999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 010854          481 LRRVLRDQIKHELSV  495 (499)
Q Consensus       481 ~r~~l~~~~~~~~~~  495 (499)
                      +|++|++++.++++.
T Consensus       437 ~r~~L~~~~~~~~~~  451 (452)
T PRK07445        437 NRQQLQQIAVQRLGL  451 (452)
T ss_pred             CHHHHHHHHHHhhCC
Confidence            999999999998864

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=6.2e-58  Score=470.34  Aligned_cols=457  Identities=19%  Similarity=0.207  Sum_probs=357.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+|+++.+. ...............+.
T Consensus        75 ~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~  153 (538)
T TIGR03208        75 VGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPA  153 (538)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCc
Confidence            67899999999999999999999999999999999999999999999999999999987531 00111111111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      ...++.....        ....+.+++..........   ........++++++++|||||||.||+|+++|+++...+.
T Consensus       154 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~  225 (538)
T TIGR03208       154 LRQVVVIDGD--------GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIH  225 (538)
T ss_pred             ceEEEEecCC--------CCcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHH
Confidence            1111111110        1123444333211100000   0112235679999999999999999999999999998888


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                      .....++++.+|++++.+|++|..++.. ++.+++.|+++++.+ .+++..+++.++++++|++.++|+++..+......
T Consensus       226 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~  304 (538)
T TIGR03208       226 PYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE  304 (538)
T ss_pred             HHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence            8777788899999999999999988765 889999999998875 56789999999999999999999999998876554


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      .+.+++++|.++++|+++++.+.+++.+.+ ++.+++.||+||++.......... .....++|+|+++++++|+|++++
T Consensus       305 ~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~  383 (538)
T TIGR03208       305 SGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGA  383 (538)
T ss_pred             cCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCC
Confidence            456678999999999999999998887766 688999999999886554333221 122457899999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  .|||++ ++..+.+  ++.+++.+.        ..+++||+|||+|++|++|++++.||.+|+++++|++|+
T Consensus       384 ~~~~g~--~Gel~v~g~~~~~g--y~~~~~~~~--------~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~  451 (538)
T TIGR03208       384 KLSQGE--TGRLLVRGCSNFGG--YLKRPHLNS--------TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIP  451 (538)
T ss_pred             CCcCCC--CcEEEEecCccccc--ccCCccccc--------ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEEC
Confidence            999998  499999 5443332  222222211        135689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.+||+++. .+++|.+++|++.++...+ +.+++++++..+...+.+++.+++++   .+++.|+.|..+++++++|+|
T Consensus       452 p~eIE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~~~~---~~l~~~~~P~~i~~v~~iP~t  526 (538)
T TIGR03208       452 VVEIENLLY-QHPAVAQVAIVAYPDERLG-ERACAVVVPKPGCTLDFAAMVAFLKA---QKVALQYIPERLEVVDALPAT  526 (538)
T ss_pred             HHHHHHHHh-cCcceeeEEEEeccCCCCC-ceEEEEEEECCCCCCCHHHHHHHHHh---cchhhccCCcEEEEeccCCCC
Confidence            999999996 8999999999999988777 88999999887655566666555432   368899999999999999999


Q ss_pred             CCcHHHHHHHH
Q 010854          476 ASNKLLRRVLR  486 (499)
Q Consensus       476 ~~GKv~r~~l~  486 (499)
                      ++||++|++|+
T Consensus       527 ~~gKv~r~~L~  537 (538)
T TIGR03208       527 PAGKIQKFRLR  537 (538)
T ss_pred             CccccchHhhc
Confidence            99999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-58  Score=467.04  Aligned_cols=442  Identities=19%  Similarity=0.198  Sum_probs=357.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+++++..++++++++.+++++....      .+.........
T Consensus        50 ~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~  123 (496)
T PRK06839         50 VKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQN------MALSMQKVSYV  123 (496)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHH------HHHHhhhccCc
Confidence            579999999999999999999999999999999999999999999999999999999875421      11111111110


Q ss_pred             -ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 -KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                       ..+.+               .++.++......       ......++++++++|||||||.||+|.++|.++.......
T Consensus       124 ~~~~~~---------------~~~~~~~~~~~~-------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~  181 (496)
T PRK06839        124 QRVISI---------------TSLKEIEDRKID-------NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNN  181 (496)
T ss_pred             ceEEEe---------------cchHhhhccCCC-------CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHH
Confidence             11111               122222221111       1112446899999999999999999999999987766655


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ...++++.+|++++.+|++|.+++.. ++.++..|+++++.+ ..+++.+++.++++++|++.++|++++.+++......
T Consensus       182 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  260 (496)
T PRK06839        182 TFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFET  260 (496)
T ss_pred             HHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccccc
Confidence            56678889999999999999999876 688899999988765 5688999999999999999999999999998876666


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC-CCCCccccccccCCCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      .+++++|.++++|+.+++++...+...  +.++.+.||+||++...+.... ......+++|+|+++++++|+|+++.++
T Consensus       261 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~  338 (496)
T PRK06839        261 TNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV  338 (496)
T ss_pred             CCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCC
Confidence            778899999999999999998888764  7889999999999865443322 2234567899999999999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  .|||+| ++..+.  .+..+++.+...+       .++||+|||+++++++|++++.||.+|+|+++|.+|+|.
T Consensus       339 ~~g~--~Gel~v~~~~~~~--gy~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  407 (496)
T PRK06839        339 EVGE--VGELLIRGPNVMK--EYWNRPDATEETI-------QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPL  407 (496)
T ss_pred             CCCC--ceEEEEECCCcch--hhcCChHHHHHHH-------cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHH
Confidence            9998  599999 444332  1222222222222       257999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||+++. .+|+|.+++|++++++..+ +.++++|+++++...+.++++++    +.+.|+.|++|..+++++++|+|.+
T Consensus       408 ~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~P~~~~~v~~~P~t~~  481 (496)
T PRK06839        408 EVEQVIN-KLSDVYEVAVVGRQHVKWG-EIPIAFIVKKSSSVLIEKDVIEH----CRLFLAKYKIPKEIVFLKELPKNAT  481 (496)
T ss_pred             HHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEEEECCCCCCCHHHHHHH----HHhhCcCCCCCcEEEEeccCCCCcc
Confidence            9999996 8999999999999998888 89999999987666666555554    5568999999999999999999999


Q ss_pred             cHHHHHHHHHHHHh
Q 010854          478 NKLLRRVLRDQIKH  491 (499)
Q Consensus       478 GKv~r~~l~~~~~~  491 (499)
                      ||++|++|+++.++
T Consensus       482 GKi~r~~l~~~~~~  495 (496)
T PRK06839        482 GKIQKAQLVNQLKS  495 (496)
T ss_pred             ccccHHHHHHHhhc
Confidence            99999999987654

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.1e-58  Score=468.73  Aligned_cols=456  Identities=24%  Similarity=0.274  Sum_probs=366.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++++....      .........+.
T Consensus        52 v~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~  125 (513)
T PRK07656         52 IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLG------VDYSATTRLPA  125 (513)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHH------HHHHHHhccCC
Confidence            688999999999999999999999999999999999999999999999999999999875421      11111111111


Q ss_pred             c-eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      . .++........  .......+|.++......     .........+++++++|||||||.||+|.++|.++...+...
T Consensus       126 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~  198 (513)
T PRK07656        126 LEHVVICETEEDD--PHTEKMKTFTDFLAAGDP-----AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADW  198 (513)
T ss_pred             ccEEEEEcCcccc--cCccccccHHHHHhcCCC-----CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHH
Confidence            1 12111111111  011133567776543221     112334567999999999999999999999999999888887


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ...+++++++++++.+|++|.+++.. ++.+++.|+++++.+ ..+++.+++.|+++++|++.++|+++..|.+......
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  277 (513)
T PRK07656        199 AEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA  277 (513)
T ss_pred             HHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC
Confidence            77888999999999999999999876 889999999998875 5678999999999999999999999999999877777


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCc--cccccccCCCceEEEECCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA--FGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      .+++++|.++++|+++++.+.+.+...+....+++.||+||++++...+.......  ..++|.|+++++++|+|+.+++
T Consensus       278 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~  357 (513)
T PRK07656        278 EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEE  357 (513)
T ss_pred             CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCC
Confidence            77899999999999999999999987774338999999999987666555433322  6789999999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      ++.|+.  ||+++ ++....+  ++.++..+.      +..++++||+|||+|+++++|++++.||.+|+++++|.+++|
T Consensus       358 ~~~g~~--Gel~v~~~~~~~g--y~~~~~~~~------~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~  427 (513)
T PRK07656        358 VPVGEV--GELLVRGPNVMKG--YYDDPEATA------AAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYP  427 (513)
T ss_pred             CCCCCc--eEEEEEcchhhhh--hcCCHHHHh------hhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCH
Confidence            999984  99999 4433322  111111111      122446799999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. .+++|.+++|++.++...+ +.++++|+..++...+.+++.++    +.+.|++++.|..++++++||+|+
T Consensus       428 ~~iE~~l~-~~~~i~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~p~~i~~v~~iP~t~  501 (513)
T PRK07656        428 AEVEEVLY-EHPAVAEAAVIGVPDERLG-EVGKAYVVLKPGAELTEEELIAY----CREHLAKYKVPRSIEFLDELPKNA  501 (513)
T ss_pred             HHHHHHHH-hCCCeeEEEEEecCCcccC-ceEEEEEEECCCCCCCHHHHHHH----HHhhcccccCCCEEEEecCCCCCC
Confidence            99999996 8999999999999988777 88899999876555565555554    557899999999999999999999


Q ss_pred             CcHHHHHHHHH
Q 010854          477 SNKLLRRVLRD  487 (499)
Q Consensus       477 ~GKv~r~~l~~  487 (499)
                      +||++|++|++
T Consensus       502 ~gK~~r~~l~~  512 (513)
T PRK07656        502 TGKVLKRALRE  512 (513)
T ss_pred             ccceeHHHHhc
Confidence            99999999874

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.3e-58  Score=473.43  Aligned_cols=467  Identities=21%  Similarity=0.241  Sum_probs=362.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+|+++....      ...........
T Consensus        79 i~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~  152 (573)
T PRK05605         79 VRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAP------TVERLRRTTPL  152 (573)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHH------HHHhhhhcccc
Confidence            689999999999999999999999999999999999999999999999999999999775321      11111111111


Q ss_pred             ceEEecccCCC---------------------CCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 010854           82 KAIVLPAIGND---------------------VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT  140 (499)
Q Consensus        82 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtT  140 (499)
                      ..++.......                     .......+..+|.++......... ..........+++++++||||||
T Consensus       153 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTT  231 (573)
T PRK05605        153 ETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDG-SDVSHPRPTPDDVALILYTSGTT  231 (573)
T ss_pred             ceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhccccccc-cccCCCCCCCCCEEEEEcCCCCC
Confidence            11111100000                     000011233456665543221000 11122235678999999999999


Q ss_pred             CCCceEEecchhhHHHhhhcceecc-C-cCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhC
Q 010854          141 GEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAG  217 (499)
Q Consensus       141 G~pk~v~~s~~~~~~~~~~~~~~~~-~-~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~  217 (499)
                      |.||+|.++|+++...+......+. + ..+++++..+|++|.+++.. ++.+++.|+++++.+ ..+++.+++.+++++
T Consensus       232 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~  310 (573)
T PRK05605        232 GKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHP  310 (573)
T ss_pred             CCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhC
Confidence            9999999999998877654333222 2 34789999999999999865 777889999999886 457899999999999


Q ss_pred             CeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccc
Q 010854          218 VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG  297 (499)
Q Consensus       218 ~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  297 (499)
                      +|++.++|++++.|.+.......+++++|.++++|+.+++++.+.+...+ +..+++.||+||++..+...........+
T Consensus       311 ~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  389 (573)
T PRK05605        311 PTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPG  389 (573)
T ss_pred             CEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCC
Confidence            99999999999999988777777789999999999999999988887655 68899999999998766655444444567


Q ss_pred             cccccCCCceEEEECCC--CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecC
Q 010854          298 AFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       298 ~~g~~~~~~~~~i~d~~--g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  374 (499)
                      ++|+|.+++.++|+|++  +.+++.|+  .|||++ ++..+.+  ++.++..+...|.       .+||+|||+++++++
T Consensus       390 ~~G~~~~~~~~~i~d~~~~~~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~~-------~g~~~TGD~~~~~~~  458 (573)
T PRK05605        390 YVGVPFPDTEVRIVDPEDPDETMPDGE--EGELLVRGPQVFKG--YWNRPEETAKSFL-------DGWFRTGDVVVMEED  458 (573)
T ss_pred             ccccCCCCCEEEEEcCCCCCccCCCCC--eeEEEEecCchhhh--hcCChhHhhhccc-------CCCcccCCEEEEcCC
Confidence            89999999999999954  58888888  599999 4433332  2222222222221       249999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  454 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  454 (499)
                      |++++.||.||+++++|++|+|.+||+++. .++.|.++++++.++...+ +.+++++++.++...+.+++.++    ++
T Consensus       459 g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~-~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~l~~~----~~  532 (573)
T PRK05605        459 GFIRIVDRIKELIITGGFNVYPAEVEEVLR-EHPGVEDAAVVGLPREDGS-EEVVAAVVLEPGAALDPEGLRAY----CR  532 (573)
T ss_pred             CcEEEEeccccceeeCCEEECHHHHHHHHH-hCcccceEEEEeeecccCC-eEEEEEEEECCCCCCCHHHHHHH----HH
Confidence            999999999999999999999999999997 8999999999999988777 89999999887655565555444    56


Q ss_pred             hhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          455 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       455 ~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      +.|+.++.|..++++++||+|.+||++|++|++++.++++
T Consensus       533 ~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        533 EHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             HhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHhc
Confidence            7888999999999999999999999999999999988765

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-57  Score=471.35  Aligned_cols=472  Identities=18%  Similarity=0.212  Sum_probs=369.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc---
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..++++++++.+|+++..... .....+......   
T Consensus        67 i~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~  145 (558)
T PRK12583         67 VQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAE  145 (558)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhcc
Confidence            6899999999999999999999999999999999999999999999999999999997643110 000111111000   


Q ss_pred             ----------CCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCC-CCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010854           79 ----------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP  147 (499)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~  147 (499)
                                .+....++.....     .......|.++........ ...........++++++++|||||||.||+|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~  220 (558)
T PRK12583        146 GQPGALACERLPELRGVVSLAPA-----PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGAT  220 (558)
T ss_pred             ccccccccccCCcceEEEEecCC-----CCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEE
Confidence                      0001111111111     1123344555443322100 00011122345789999999999999999999


Q ss_pred             ecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchH
Q 010854          148 WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS  226 (499)
Q Consensus       148 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~  226 (499)
                      ++|+++...+......++++++|++++..|++|.++... ++.++..|+++++.....++..+++.++++++|++.++|+
T Consensus       221 ~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~  300 (558)
T PRK12583        221 LSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPT  300 (558)
T ss_pred             eeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHH
Confidence            999999888887777788999999999999999999876 8888999999987765667889999999999999999999


Q ss_pred             HHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC--CCccccccccCC
Q 010854          227 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATM  304 (499)
Q Consensus       227 ~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~--~~~~~~~g~~~~  304 (499)
                      ++..++........+++++|.++++|+.+++++.+++.+.+....+++.||+||++.+........  .....++|.|.+
T Consensus       301 ~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~  380 (558)
T PRK12583        301 MFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQP  380 (558)
T ss_pred             HHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCC
Confidence            999888776656677899999999999999999999988886678999999999997665443221  234578999999


Q ss_pred             CceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc
Q 010854          305 TAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA  383 (499)
Q Consensus       305 ~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~  383 (499)
                      ++.++|+|+++.+++.|+  .|||++ ++..+.+  ++.++......+      ..++||+|||+++++++|++++.||.
T Consensus       381 ~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~g--y~~~~~~~~~~~------~~~~~~~TGDl~~~~~dg~l~i~GR~  450 (558)
T PRK12583        381 HLEVKVVDPDGATVPRGE--IGELCTRGYSVMKG--YWNNPEATAESI------DEDGWMHTGDLATMDEQGYVRIVGRS  450 (558)
T ss_pred             CCeEEEECCCCCCCCCCC--eeEEEEEeCccchh--hcCChHHHHhhc------CCCCCeeccceEEECCCccEEEEecc
Confidence            999999998899999998  599999 4433332  222222222112      24579999999999999999999999


Q ss_pred             CCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee
Q 010854          384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV  463 (499)
Q Consensus       384 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p  463 (499)
                      +|+++++|.+|+|.+||+++. .+++|.+++|++.++...+ +.++++++..++.+.+.+++.++    ++++|+.|+.|
T Consensus       451 ~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~i~~~----~~~~L~~~~~P  524 (558)
T PRK12583        451 KDMIIRGGENIYPREIEEFLF-THPAVADVQVFGVPDEKYG-EEIVAWVRLHPGHAASEEELREF----CKARIAHFKVP  524 (558)
T ss_pred             cceeEECCEEeCHHHHHHHHH-hCCCeeEEEEEeeecCCCC-cEEEEEEEECCCCCCCHHHHHHH----HHhhcccCcCC
Confidence            999999999999999999997 8999999999999987777 88999999876655555554444    56789999999


Q ss_pred             eEEEEcCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          464 SLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       464 ~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      .+++++++||+|++||++|+.|+++..+++..
T Consensus       525 ~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~~~  556 (558)
T PRK12583        525 RYFRFVDEFPMTVTGKVQKFRMREISIEELAL  556 (558)
T ss_pred             cEEEEeccCCCCCCCCccHHHHHHHHHhhcCC
Confidence            99999999999999999999999998876654

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-58  Score=468.74  Aligned_cols=462  Identities=20%  Similarity=0.188  Sum_probs=371.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++...      ..+....+....
T Consensus        58 i~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  131 (523)
T PRK08316         58 LKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAALALLPV  131 (523)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchH------HHHHHHhhhcCc
Confidence            67999999999999999999999999999999999999999999999999999999987542      122222211111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..........  ..........+.++......     .........+++++++|||||||.||+|.++|.++........
T Consensus       132 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  204 (523)
T PRK08316        132 DTLILSLVLG--GREAPGGWLDFADWAEAGSV-----AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI  204 (523)
T ss_pred             cceeeeeccc--ccccccchhhHHHHHhcCCC-----ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            1111111000  11112233455555443221     1123345678999999999999999999999999998887777


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++++++..+|++|.+++.. ++.++..|+++++.+ ..+++.+++.++++++|++.++|+++..+.+.......
T Consensus       205 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  283 (523)
T PRK08316        205 VAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTR  283 (523)
T ss_pred             HHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccC
Confidence            7788999999999999999999865 667788999999986 45789999999999999999999999999988776677


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      +++++|.+++||+.++.++...+++.+++..+++.||+||++.+....... .....+++|+|+++++++|+|++|++++
T Consensus       284 ~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~  363 (523)
T PRK08316        284 DLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVA  363 (523)
T ss_pred             CcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCC
Confidence            789999999999999999999999888788999999999998765544332 2344578999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  .||+++ ++....+  ++.+++.+...+       .++||+|||+|+++++|++++.||.+|+++++|.+|+|.+
T Consensus       364 ~g~--~Gei~v~~~~~~~~--y~~~~~~~~~~~-------~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~  432 (523)
T PRK08316        364 PGE--VGEIVHRSPQLMLG--YWDDPEKTAEAF-------RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASRE  432 (523)
T ss_pred             CCC--cceEEEECCchhhh--hcCCHHHHHHHh-------hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHH
Confidence            998  599999 4443332  222222222222       2579999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||+.+. .+++|.+++|++.+++..+ +.+++++++.++...+.+++.++    ++++|+.|+.|..+++++++|+|++|
T Consensus       433 iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~p~~i~~v~~~p~t~~g  506 (523)
T PRK08316        433 VEEALY-THPAVAEVAVIGLPDPKWI-EAVTAVVVPKAGATVTEDELIAH----CRARLAGFKVPKRVIFVDELPRNPSG  506 (523)
T ss_pred             HHHHHH-hCCChheEeEecccCcccC-CeEEEEEEECCCCCCCHHHHHHH----HHHhcccCCCCcEEEEecCCCCCCcc
Confidence            999996 8999999999999988777 88999999887655455554444    56688999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 010854          479 KLLRRVLRDQIKHELS  494 (499)
Q Consensus       479 Kv~r~~l~~~~~~~~~  494 (499)
                      |++|++|++.|++.+.
T Consensus       507 Ki~r~~l~~~~~~~~~  522 (523)
T PRK08316        507 KILKRELRERYAGAFT  522 (523)
T ss_pred             ceeHHHHHHHHHhhcc
Confidence            9999999999987653

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.7e-58  Score=478.02  Aligned_cols=453  Identities=19%  Similarity=0.177  Sum_probs=341.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEc-CCCCC--HHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|+++....      ........
T Consensus        76 ~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~  149 (631)
T PRK07769         76 TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAE------GVRKFFRA  149 (631)
T ss_pred             cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHH------HHHHHHhh
Confidence            5899999999999999999999999999999999 45543  688999999999999999875321      11111111


Q ss_pred             CC--CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           79 AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      .+  ....++......             +   ...     .........++++++++|||||||.||||+++|+++...
T Consensus       150 ~~~~~~~~~~~~~~~~-------------~---~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~  208 (631)
T PRK07769        150 RPAKERPRVIAVDAVP-------------D---EVG-----ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTN  208 (631)
T ss_pred             ccccccceEEEccccc-------------c---ccc-----cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHH
Confidence            11  001111110000             0   000     001111345789999999999999999999999999888


Q ss_pred             hhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CC--ChhHHHHHHHHhCC---eEEecchHHHHH
Q 010854          157 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKA  230 (499)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~--~~~~~~~~i~~~~~---t~l~~~P~~l~~  230 (499)
                      +......+++.++|+++.++|++|.+++...+.+++.|+++++.++ .+  ++..+++.++++++   +.+.++|+++..
T Consensus       209 ~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~  288 (631)
T PRK07769        209 VLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFE  288 (631)
T ss_pred             HHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHH
Confidence            7777777788999999999999999999887777888999988854 23  67888999999886   789999998877


Q ss_pred             HHccC---C--CCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCCC-------
Q 010854          231 WRNTN---C--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP-------  293 (499)
Q Consensus       231 l~~~~---~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~~-------  293 (499)
                      +....   .  ....+++++|.+++||+++++++.+++.+.+.     ...+++.||+||++..+........       
T Consensus       289 l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~  368 (631)
T PRK07769        289 HAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVD  368 (631)
T ss_pred             HHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEc
Confidence            66431   1  12457889999999999999999998887762     2459999999998765543321110       


Q ss_pred             -------------------CccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhc
Q 010854          294 -------------------QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFR  352 (499)
Q Consensus       294 -------------------~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~  352 (499)
                                         ....++|+|.++..++|+| ++|++++.|+  +|||++ ++..+.+  ++.+++.+...|.
T Consensus       369 ~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge--~GEl~v~gp~v~~G--Y~~~~~~t~~~f~  444 (631)
T PRK07769        369 RDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ--IGEIWLHGNNIGTG--YWGKPEETAATFQ  444 (631)
T ss_pred             HHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC--EEEEEecCCCcccc--ccCChhHHHHHHh
Confidence                               0125789999999999999 6899999998  599999 6655543  3344444444443


Q ss_pred             CCC-----------CCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCcccee--eeEEEeC
Q 010854          353 GMP-----------MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVS  419 (499)
Q Consensus       353 ~~~-----------~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~--~~v~~~~  419 (499)
                      ..+           ...+++||+|||+|+++ +|+|+++||.||+||++|++|+|.|||++|.+.||.|.+  ++|++++
T Consensus       445 ~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~  523 (631)
T PRK07769        445 NILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVP  523 (631)
T ss_pred             hhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEec
Confidence            210           11345899999999995 999999999999999999999999999999634899998  8999888


Q ss_pred             C-------------------CCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhhcCC-ce-eeeEEEEcC--CCCCC
Q 010854          420 P-------------------AGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNP-LF-KVSLVKVVP--EFPRT  475 (499)
Q Consensus       420 ~-------------------~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~l~~-~~-~p~~~~~~~--~iP~t  475 (499)
                      +                   +..+ +.++++|++.++. ..+.++|.+++++    .|+. |. .|+.+++++  +||+|
T Consensus       524 d~~~~~~~~~~~~~~~~~~~~~~g-e~~~a~v~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~p~~~~~v~~~~lP~t  598 (631)
T PRK07769        524 ANQLPQVVFDDSHAGLKFDPEDTS-EQLVIVAERAPGAHKLDPQPIADDIRA----AIAVRHGVTVRDVLLVPAGSIPRT  598 (631)
T ss_pred             ccccccccccccccccccccCCCC-ccEEEEEEecCccccccHHHHHHHHHH----HHHHHcCCCccEEEEECCCccccC
Confidence            8                   4466 8899999988763 3456666666655    4443 34 367788886  79999


Q ss_pred             CCcHHHHHHHHHHHHh
Q 010854          476 ASNKLLRRVLRDQIKH  491 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~  491 (499)
                      ++|||+|++|++.+.+
T Consensus       599 ~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        599 SSGKIARRACRAAYLD  614 (631)
T ss_pred             CCcHHHHHHHHHHHHc
Confidence            9999999999998753

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.3e-57  Score=468.54  Aligned_cols=456  Identities=18%  Similarity=0.195  Sum_probs=357.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+|+++......      .    ....
T Consensus        77 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~------~----~~~~  146 (546)
T PLN02330         77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKV------K----GLGL  146 (546)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhH------h----hcCC
Confidence            67999999999999999999999999999999999999999999999999999999988543211      1    1111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+++..  ..     ......|.+++.....  ............+++++++|||||||.||+|+++|.++...+....
T Consensus       147 ~~i~~~~--~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~  217 (546)
T PLN02330        147 PVIVLGE--EK-----IEGAVNWKELLEAADR--AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSL  217 (546)
T ss_pred             cEEEecC--CC-----CCCcccHHHHHhhccc--cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHh
Confidence            1222211  11     1234567776654322  1111112234568999999999999999999999999887654332


Q ss_pred             eec--cCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          162 AHI--DLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       162 ~~~--~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ...  .....+..+.++|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+++.....
T Consensus       218 ~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  296 (546)
T PLN02330        218 FSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE  296 (546)
T ss_pred             hccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccc
Confidence            211  1223467889999999999875 788899999999886 567889999999999999999999999998865544


Q ss_pred             ccccc--ceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----CCccccccccCCCceEEEEC
Q 010854          239 GLDWT--KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       239 ~~~l~--~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~i~d  312 (499)
                      ..++.  .+|.++++|+++++++.+++.+.+++..+++.||+||++..........    .....++|.|+|+++++++|
T Consensus       297 ~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d  376 (546)
T PLN02330        297 EFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID  376 (546)
T ss_pred             ccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEe
Confidence            44444  4789999999999999999998887899999999999876544322111    12346899999999999999


Q ss_pred             -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                       +++++++.|+  .|||++ ++..+.+  ++.++..+...      .+.++||+|||+++++++|++++.||.+|+++++
T Consensus       377 ~~~~~~~p~g~--~Gel~v~g~~~~~g--y~~~~~~~~~~------~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  446 (546)
T PLN02330        377 PDTGRSLPKNT--PGELCVRSQCVMQG--YYNNKEETDRT------IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYK  446 (546)
T ss_pred             CCCCccCCCCC--ceEEEEecchhhhh--hccCccchhhh------ccCCCceecccEEEEeCCCcEEEEechHHhhhcC
Confidence             7889999998  599999 5443332  11122222211      2356899999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.+||+++. .+++|.+++|++++++..+ +.++++|++.++...+.+++.+    +++..|+.|+.|..+++++
T Consensus       447 G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~----~~~~~l~~~~~p~~~~~v~  520 (546)
T PLN02330        447 GFQVAPAELEAILL-THPSVEDAAVVPLPDEEAG-EIPAACVVINPKAKESEEDILN----FVAANVAHYKKVRVVQFVD  520 (546)
T ss_pred             CEEECHHHHHHHHH-hCCchheEEEEeccccccC-ceeEEEEEECCCCCCCHHHHHH----HHHHhcccccCceEEEEec
Confidence            99999999999996 8999999999999988887 8889999988765555554444    4566899999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhh
Q 010854          471 EFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      ++|+|++||++|++|++++....
T Consensus       521 ~iP~t~~GK~~r~~L~~~~~~~~  543 (546)
T PLN02330        521 SIPKSLSGKIMRRLLKEKMLSIN  543 (546)
T ss_pred             cCCCCCCcceeHHHHHHHHHhhh
Confidence            99999999999999999997653

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-57  Score=467.11  Aligned_cols=457  Identities=20%  Similarity=0.221  Sum_probs=349.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+|++........      ........
T Consensus        65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~~~~~~  138 (534)
T PRK05852         65 LLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA------EPTTRWWP  138 (534)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc------cccccccc
Confidence            689999999999999999999999999999999999999999999999999999998764211000      00000001


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+......     ..+.... .......  +. ..........+++++++|||||||.||+|+++|+++...+....
T Consensus       139 ~~~~~~~~~~~-----~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~  209 (534)
T PRK05852        139 LTVNVGGDSGP-----SGGTLSV-HLDAATE--PT-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAII  209 (534)
T ss_pred             eeeeecccccc-----ccccccc-ccccccC--CC-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHH
Confidence            11111100000     0000000 0000000  00 00111112247889999999999999999999999998888887


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC-
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-  238 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~-  238 (499)
                      ..++++.+|++++.+|++|.+++.. ++.+++.|+++++.+ ..+++..+++.|+++++|.++++|+++..|.+..... 
T Consensus       210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (534)
T PRK05852        210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP  289 (534)
T ss_pred             HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence            7888999999999999999999876 888888999888754 2456788999999999999999999999998865432 


Q ss_pred             -cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCcccccccc--CCCceEEEE
Q 010854          239 -GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTA--TMTAGLVIL  311 (499)
Q Consensus       239 -~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~--~~~~~~~i~  311 (499)
                       ..+++++|.+.++|+++++.+.+++.+.+ +..+++.||+||++.........    ......+.|.+  .++++++++
T Consensus       290 ~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~  368 (534)
T PRK05852        290 SGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV  368 (534)
T ss_pred             ccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEE
Confidence             34567999999999999999999988776 68899999999998655433221    11111233443  699999999


Q ss_pred             CCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          312 DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       312 d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                      |++|++++.|+  .|||++ ++..+.+  ++.+++.+...+       .++||+|||++++|++|++++.||.+|+|+++
T Consensus       369 d~~g~~~~~g~--~Gel~v~g~~v~~g--Y~~~~~~t~~~~-------~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~  437 (534)
T PRK05852        369 GSDGLPLPAGA--VGEVWLRGTTVVRG--YLGDPTITAANF-------TDGWLRTGDLGSLSAAGDLSIRGRIKELINRG  437 (534)
T ss_pred             CCCCCCCCCCC--ceEEEEecCcccch--hcCCcccchhhh-------cCCCcccCceEEEeCCCcEEEEecchhhEEEC
Confidence            99999999998  599999 5544432  222333332222       24699999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |.+|+|.+||+++. .+|+|.+++|++.+++..+ +.++++|+..+....+.+++.++    ++++|+.|++|..+++++
T Consensus       438 G~~v~~~~iE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~vv~~~~~~~~~~~i~~~----~~~~l~~~~~P~~i~~v~  511 (534)
T PRK05852        438 GEKISPERVEGVLA-SHPNVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQF----CRERLAAFEIPASFQEAS  511 (534)
T ss_pred             CEEECHHHHHHHHH-hCCCeeeEEEEecCCcCcC-ceEEEEEEECCCCCCCHHHHHHH----HHHhcccccCCeEEEEhh
Confidence            99999999999996 8999999999999988777 88899998766544555555555    556889999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHh
Q 010854          471 EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      +||+|++||++|++|++.|..
T Consensus       512 ~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        512 GLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             hcCCCCCccccHHHHHHHhcc
Confidence            999999999999999998864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-57  Score=467.15  Aligned_cols=454  Identities=16%  Similarity=0.198  Sum_probs=344.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+|+++......   ..+......  .
T Consensus        63 ~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~---~~~~~~~~~--~  137 (540)
T PRK05857         63 VSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS---SAVPEALHS--I  137 (540)
T ss_pred             cCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc---ccccccccc--c
Confidence            68999999999999999999999999999999999999999999999999999999987532110   011110000  0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+... ..    ...    +.+....      ...........+++++++|||||||.||||.++|+++.++.....
T Consensus       138 ~~~~~~~~-~~----~~~----~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~  202 (540)
T PRK05857        138 PVIAVDIA-AV----TRE----SEHSLDA------ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQ  202 (540)
T ss_pred             ceeEeecc-cc----ccc----ccccccc------cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhh
Confidence            01111100 00    000    0000000      000112234678999999999999999999999999876654322


Q ss_pred             ----eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          162 ----AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       162 ----~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                          ..+....+++.+..+|++|.+++...+.+++.|+++++.  ..++..+++.|+++++|+++++|+++..|++....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~--~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~  280 (540)
T PRK05857        203 KEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTG--GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKS  280 (540)
T ss_pred             hccccccccccCceeeecCCccccchHHHHHHHhhcceeEEec--CCChhHHHHHHHhcCcceEEeChHHHHHHHhcccc
Confidence                223556788999999999999998888899999998764  34678899999999999999999999999887766


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----CCccccccccCCCceEEEECC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDE  313 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~i~d~  313 (499)
                      ...+++++|.++++|++++....+++ ..+ +.++++.||+||++..........    ....+++|+|++|++++|+|+
T Consensus       281 ~~~~~~~lr~~~~gG~~~~~~~~~~~-~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~  358 (540)
T PRK05857        281 ANATVPSLRLVGYGGSRAIAADVRFI-EAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT  358 (540)
T ss_pred             CCCcCccceEEEEcCccCCchhHHHH-HHh-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECc
Confidence            66778999999999999887776544 344 788999999999885433222111    123578999999999999997


Q ss_pred             CCCC-C-----CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCe
Q 010854          314 CGVP-Y-----PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT  386 (499)
Q Consensus       314 ~g~~-~-----~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~  386 (499)
                      ++.. +     +.++  +|||+| ++..+.+  ++.+++.+...|       .++||+|||+|++|++|++++.||.+|+
T Consensus       359 ~~~~~~~~~~~~~~~--~Gel~v~g~~~~~G--Y~~~~~~t~~~~-------~~g~~~TGDlg~~d~~g~l~~~GR~~~~  427 (540)
T PRK05857        359 DGIGPTAPGAGPSAS--FGTLWIKSPANMLG--YWNNPERTAEVL-------IDGWVNTGDLLERREDGFFYIKGRSSEM  427 (540)
T ss_pred             cccCccccccCCCCC--cceEEEeCcchhhh--hhCCccchhhhc-------CCCceeccceEEEcCCceEEEecccccc
Confidence            7652 2     3355  599999 5443332  222222222222       2469999999999999999999999999


Q ss_pred             eeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCceeeeE
Q 010854          387 MNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSL  465 (499)
Q Consensus       387 i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~p~~  465 (499)
                      ||++|.+|+|.+||++|. .||+|.+++|++.++...+ +.+.++++..+... ...+++.+.+.+.+++.+++|+.|..
T Consensus       428 ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~  505 (540)
T PRK05857        428 IICGGVNIAPDEVDRIAE-GVSGVREAACYEIPDEEFG-ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPST  505 (540)
T ss_pred             EecCCEEECHHHHHHHHH-hCCCeeEEEEEecCccccc-cceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeE
Confidence            999999999999999997 8999999999999987776 77888887665322 12356777888888889999999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          466 VKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       466 ~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++++++||+|++||++|+.|++.+.+.
T Consensus       506 v~~~~~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        506 IVIVTDIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             EEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence            999999999999999999999888753

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-57  Score=467.06  Aligned_cols=455  Identities=20%  Similarity=0.183  Sum_probs=355.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++.++||+++|++++|+++..+.+++.+++++++++.+++++...+      ...........
T Consensus        54 ~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~  127 (528)
T PRK07470         54 VRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPD  127 (528)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCc
Confidence            679999999999999999999999999999999999999999999999999999999875321      11111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++.....       ....++.++......    .........++++++++|||||||.||+|+++|.++...+....
T Consensus       128 ~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~  196 (528)
T PRK07470        128 LTHVVAIGGA-------RAGLDYEALVARHLG----ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHL  196 (528)
T ss_pred             CceEEEeCCC-------cccccHHHHHhcCCC----CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHH
Confidence            1111111111       123456666543211    11122345678999999999999999999999999876544332


Q ss_pred             eec--cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          162 AHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       162 ~~~--~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ..+  +...+|+++..+|++|.+++..++ .++.|+++++.+ ..++++.+++.|+++++|++.++|++++.+.+.....
T Consensus       197 ~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  275 (528)
T PRK07470        197 ADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD  275 (528)
T ss_pred             HHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC
Confidence            221  467889999999999999987655 566777777664 3457889999999999999999999999998877666


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-------CCCccccccccCCCceEEEE
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVIL  311 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~i~  311 (499)
                      ..+++++|.++++|+++++...+++...+ +..+++.||+||++..+......       .....+++|.|++++.++++
T Consensus       276 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~  354 (528)
T PRK07470        276 RYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQ  354 (528)
T ss_pred             CCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEE
Confidence            67788999999999999999888887665 67899999999988655433211       12345788999999999999


Q ss_pred             CCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          312 DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       312 d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                      |++|++++.|+  .|||++ ++..+.+  ++.++..+...+       .++||+|||+++++++|++++.||.||++|++
T Consensus       355 d~~~~~~~~g~--~Gel~i~~~~~~~g--y~~~~~~~~~~~-------~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~  423 (528)
T PRK07470        355 DDEGRELPPGE--TGEICVIGPAVFAG--YYNNPEANAKAF-------RDGWFRTGDLGHLDARGFLYITGRASDMYISG  423 (528)
T ss_pred             CCCCCCCCCCC--ceEEEEeCCccchh--hcCCHHHHHhhh-------cCCcEecceeEEEccCCeEEEeCCccceEEeC
Confidence            99999999998  599999 4443332  222222222222       24699999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.+||+++. .+++|.+++|++.+++..+ +.++++++..++...+.+++.++    +.+.|++|+.|..+++++
T Consensus       424 G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~P~~~~~~~  497 (528)
T PRK07470        424 GSNVYPREIEEKLL-THPAVSEVAVLGVPDPVWG-EVGVAVCVARDGAPVDEAELLAW----LDGKVARYKLPKRFFFWD  497 (528)
T ss_pred             CEEECHHHHHHHHH-hCCCceEEEEEeccCcccC-ceeEEEEEECCCCCCCHHHHHHH----HHHhhhcCCCCcEEEEec
Confidence            99999999999997 8999999999999988777 88888888877655565555554    556888999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhh
Q 010854          471 EFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +||+|++||++|+.|+++++++
T Consensus       498 ~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        498 ALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             cCCCCCcccccHHHHHHHHHhc
Confidence            9999999999999999988764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-58  Score=475.65  Aligned_cols=467  Identities=13%  Similarity=0.074  Sum_probs=338.4

Q ss_pred             CEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCceEE
Q 010854            6 DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV   85 (499)
Q Consensus         6 d~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (499)
                      |+|+|+++|+++|++++|||+++|++.||+++.++++++.++|+++++++++++.+..      +.+.......+....+
T Consensus       131 d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~i  204 (746)
T PTZ00342        131 KLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKL  204 (746)
T ss_pred             cEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEE
Confidence            9999999999999999999999999999999999999999999999999999976432      2222222233322222


Q ss_pred             ecccCCCCC--CC--------------CC-----------------------------cCCCCHHHHhcccCCC------
Q 010854           86 LPAIGNDVG--IP--------------LR-----------------------------EQDLSWKDFLSSVDYH------  114 (499)
Q Consensus        86 ~~~~~~~~~--~~--------------~~-----------------------------~~~~~~~~~~~~~~~~------  114 (499)
                      +........  ..              ..                             ....++.++.......      
T Consensus       205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  284 (746)
T PTZ00342        205 IILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIIL  284 (746)
T ss_pred             EEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEE
Confidence            211110000  00              00                             0001112221110000      


Q ss_pred             ------CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhccee--ccCcCCcEEEeecCccccchhhh
Q 010854          115 ------PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVI  186 (499)
Q Consensus       115 ------~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~~~~~  186 (499)
                            ............++|+|.|+|||||||.||||++||+++...+......  ....+.+++++++|++|.++...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~  364 (746)
T PTZ00342        285 FDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI  364 (746)
T ss_pred             HHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH
Confidence                  0001111233567999999999999999999999999998887654322  12335689999999999999887


Q ss_pred             hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc--------CCCCc-------------------
Q 010854          187 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG-------------------  239 (499)
Q Consensus       187 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~--------~~~~~-------------------  239 (499)
                      .+.+++.|+++++.+.  ++..+++.|++++||+++++|.+++.+.+.        ...+.                   
T Consensus       365 ~~~~l~~G~~i~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  442 (746)
T PTZ00342        365 AYLSFMLGGTINIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFS  442 (746)
T ss_pred             HHHHHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcc
Confidence            7788999999998863  678899999999999999999999988652        10000                   


Q ss_pred             ---------------ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-
Q 010854          240 ---------------LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-  303 (499)
Q Consensus       240 ---------------~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-  303 (499)
                                     .-.+++|.+++||+++++++.++++..+ ++.+++.||+||+++..+.... .....+++|.|+ 
T Consensus       443 ~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~  520 (746)
T PTZ00342        443 KFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPIS  520 (746)
T ss_pred             hHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCC
Confidence                           0026899999999999999999998765 7889999999999765554433 334568999998 


Q ss_pred             CCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEec
Q 010854          304 MTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG  381 (499)
Q Consensus       304 ~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~g  381 (499)
                      |+++++|+| +++.....+.  .|||++ ++..+.+  ++.+++.+...|      +.++||+|||+|++|++|+|+++|
T Consensus       521 pg~e~ki~d~~~~~~~~~~~--~GEl~vrGp~v~~G--Y~~~pe~T~~~f------~~dGW~~TGDig~~d~dG~l~i~g  590 (746)
T PTZ00342        521 PNTKYKVRTWETYKATDTLP--KGELLIKSDSIFSG--YFLEKEQTKNAF------TEDGYFKTGDIVQINKNGSLTFLD  590 (746)
T ss_pred             CcEEEEEecccccccCCCCC--ceEEEEecCccccc--ccCChhhhhhhc------CcCCcccCCcEEEECCCCeEEEEc
Confidence            999999998 4444333333  499999 6665543  344444444444      346899999999999999999999


Q ss_pred             ccCCeee-eCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC----------------CC-CCH-
Q 010854          382 RADDTMN-LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG----------------FT-SQP-  442 (499)
Q Consensus       382 R~~d~i~-~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~----------------~~-~~~-  442 (499)
                      |.||+|| .+|++|+|.+||+++. .||.|.+++|++.+.   . ..++|+|++...                .. .+. 
T Consensus       591 R~kdlIkls~Ge~I~p~eIE~~l~-~~p~V~~~~VvG~~~---~-~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~  665 (746)
T PTZ00342        591 RSKGLVKLSQGEYIETDMLNNLYS-QISFINFCVVYGDDS---M-DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYL  665 (746)
T ss_pred             cCCCeEEeCCCEEEchHHHHHHHh-cCCCccEEEEEccCC---c-cccEEEEECCHHHHHHHHHhcCCccccccCcccHH
Confidence            9999999 5899999999999996 899999999998532   2 578999987741                00 011 


Q ss_pred             ----------HHHHHHHHHHH-----HhhcCCceeeeEEEEcC-CC----CCCCCcHHHHHHHHHHHHhhhhhcc
Q 010854          443 ----------DKLKMIFSKAI-----QSKLNPLFKVSLVKVVP-EF----PRTASNKLLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       443 ----------~~l~~~~~~~~-----~~~l~~~~~p~~~~~~~-~i----P~t~~GKv~r~~l~~~~~~~~~~~~  497 (499)
                                .++.+.+.+.+     +..|+.|..+++|.+++ ++    -+|++.|+.|+.+.+.|+..++.-.
T Consensus       666 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~~i~  740 (746)
T PTZ00342        666 EKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFIDQVK  740 (746)
T ss_pred             HHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHHHHH
Confidence                      11233333222     34799999999988885 33    2799999999999999997776543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-57  Score=465.61  Aligned_cols=459  Identities=20%  Similarity=0.220  Sum_probs=372.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.++++....      ..+.+.....+.
T Consensus        53 ~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~  126 (521)
T PRK06187         53 VKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPT  126 (521)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCC
Confidence            68999999999999999999999999999999999999999999999999999999987543      222333333322


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++........ ........+.+++.....     .........+++++++|||||||.||++.++|.++........
T Consensus       127 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~  200 (521)
T PRK06187        127 VRTVIVEGDGPAA-PLAPEVGEYEELLAAASD-----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVC  200 (521)
T ss_pred             ccEEEEecCcccc-ccccccccHHHHhhcCCc-----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHH
Confidence            1112211111110 122445666666554322     1122345678999999999999999999999999998888877


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++.+|++++.+|++|.+++...+.+++.|+++++.+.. ++..+++.++++++|.++++|++++.|.+.......+
T Consensus       201 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~  279 (521)
T PRK06187        201 AWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD  279 (521)
T ss_pred             HhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC
Confidence            788999999999999999999988766699999999998754 8889999999999999999999999999988776777


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC-----CccccccccCCCceEEEECCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ++++|.++++|+.++.++.+++.+.+ ++.+++.||+||++..+........     ....++|.|++++.++|+|+++.
T Consensus       280 ~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~  358 (521)
T PRK06187        280 FSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGD  358 (521)
T ss_pred             cchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCC
Confidence            89999999999999999999998877 8899999999999876555443322     25678999999999999999999


Q ss_pred             CCCC--CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854          317 PYPD--DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK  393 (499)
Q Consensus       317 ~~~~--g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~  393 (499)
                      +++.  |+  .|||++ ++....+  +..+++.+...+.       ++||+|||+++++++|++++.||.+|+++.+|.+
T Consensus       359 ~~~~~~g~--~Gel~v~~~~~~~~--y~~~~~~~~~~~~-------~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~  427 (521)
T PRK06187        359 ELPPDGGE--VGEIIVRGPWLMQG--YWNRPEATAETID-------GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGEN  427 (521)
T ss_pred             CCCCCCCC--eeEEEEECcchhhh--hcCCHHHHHHHhh-------CCceeccceEEEcCCCCEEEeecccceEEcCCeE
Confidence            9988  77  599999 4433322  2222222222222       2499999999999999999999999999999999


Q ss_pred             echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854          394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP  473 (499)
Q Consensus       394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP  473 (499)
                      ++|.+||+++. .+++|.++++++.+++..+ +.+++++++.++...+.+++.++    +.+.|+.++.|..++++++||
T Consensus       428 v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~~~P  501 (521)
T PRK06187        428 IYPRELEDALY-GHPAVAEVAVIGVPDEKWG-ERPVAVVVLKPGATLDAKELRAF----LRGRLAKFKLPKRIAFVDELP  501 (521)
T ss_pred             ECHHHHHHHHH-hCCCceEEEEEeccCCCcC-ceEEEEEEECCCCCCCHHHHHHH----HHHhccCCCCceEEEEccCCC
Confidence            99999999996 8999999999999887777 88999999887666566555555    556889999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHh
Q 010854          474 RTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~  491 (499)
                      +|++||++|+.|+++|++
T Consensus       502 ~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        502 RTSVGKILKRVLREQYAE  519 (521)
T ss_pred             CCCCCCeeHHHHHHHHhc
Confidence            999999999999999875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.5e-57  Score=466.99  Aligned_cols=468  Identities=21%  Similarity=0.240  Sum_probs=366.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++++.... ....+.+.........
T Consensus        71 ~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~  149 (547)
T PRK06087         71 IEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQ-TRPVDLILPLQNQLPQ  149 (547)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEeccccc-ccHHHHHHHHHhhCCC
Confidence            689999999999999999999999999999999999999999999999999999999764311 0111112222222221


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++......    ......++.++......  .   ........+++++++|||||||.||+|.++|.++........
T Consensus       150 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~---~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~  220 (547)
T PRK06087        150 LQQIVGVDKLA----PATSSLSLSQIIADYEP--L---TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYC  220 (547)
T ss_pred             CcEEEEeCCcC----CCcCccCHHHHhccCCc--c---cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            11121111111    01122355555543221  1   112235678999999999999999999999999988887777


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..+++.++|++++.+|++|.++++. ++.+++.|+++++.+ ..++..+++.++++++|+++++|+++..+++.......
T Consensus       221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~  299 (547)
T PRK06087        221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPA  299 (547)
T ss_pred             HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCC
Confidence            7778899999999999999999875 888899999999986 56788999999999999999999888888877665666


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-CCccccccccCCCceEEEECCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      +++++|.+++||+++++++.+.+.. . ++++++.||+||++.......... .....++|.|++++.++++|+++.+++
T Consensus       300 ~~~~lr~i~~gG~~~~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  377 (547)
T PRK06087        300 DLSALRFFLCGGTTIPKKVARECQQ-R-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLP  377 (547)
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHH-c-CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCc
Confidence            7889999999999999998887764 3 789999999999987655433221 223457899999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  .||+++ ++..+.+  ++.+++.....+      ..++||+|||+++++++|++++.||.+|+|+.+|.+|+|.+
T Consensus       378 ~g~--~Gel~v~g~~~~~g--y~~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~  447 (547)
T PRK06087        378 PGC--EGEEASRGPNVFMG--YLDEPELTARAL------DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSRE  447 (547)
T ss_pred             CCC--cceEEEeccccccc--ccCCHHHHHHHh------CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHH
Confidence            998  499999 5443332  222222222222      24579999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecC-CCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      ||+++. .+++|.++++++.+++..+ +++++++++.+ +...+.+++.++++   .+.++.|+.|..|.++++||+|++
T Consensus       448 iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~l~~~~~P~~i~~v~~iP~t~s  522 (547)
T PRK06087        448 VEDILL-QHPKIHDACVVAMPDERLG-ERSCAYVVLKAPHHSLTLEEVVAFFS---RKRVAKYKYPEHIVVIDKLPRTAS  522 (547)
T ss_pred             HHHHHH-hCCCeeEEEEEecCCCCcC-ceEEEEEEECCCCCCCCHHHHHHHHH---hccccccCCCeEEEEeccCCCCCC
Confidence            999996 8999999999999988777 89999999875 33344455555433   357999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhhhcc
Q 010854          478 NKLLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       478 GKv~r~~l~~~~~~~~~~~~  497 (499)
                      ||++|++|++.+.+++...+
T Consensus       523 GK~~r~~l~~~~~~~~~~~~  542 (547)
T PRK06087        523 GKIQKFLLRKDIMRRLTQDV  542 (547)
T ss_pred             CcCcHHHHHHHHHHHhhhhh
Confidence            99999999999999876553

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.5e-57  Score=468.57  Aligned_cols=474  Identities=19%  Similarity=0.200  Sum_probs=370.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC--
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--   79 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.+|+++.... ......+.+.....  
T Consensus        65 i~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~  143 (559)
T PRK08315         65 IEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD-SDYVAMLYELAPELAT  143 (559)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccc-cchHHHHHHhhhhhhc
Confidence            689999999999999999999999999999999999999999999999999999999875311 00000011100000  


Q ss_pred             -----------CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCC-CCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010854           80 -----------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP  147 (499)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~  147 (499)
                                 .....++.....     ...+...+.++........ ............+++++++|||||||.||+|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~  218 (559)
T PRK08315        144 CEPGQLQSARLPELRRVIFLGDE-----KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGAT  218 (559)
T ss_pred             ccccccccccCCCceeEEeeccc-----CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEE
Confidence                       001111111111     1123355666654332100 00111122355789999999999999999999


Q ss_pred             ecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchH
Q 010854          148 WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS  226 (499)
Q Consensus       148 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~  226 (499)
                      ++|+++...+......++++++|+++..+|++|.+++.. ++.++..|+++++.....++..+++.++++++|++.++|+
T Consensus       219 ~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~  298 (559)
T PRK08315        219 LTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPT  298 (559)
T ss_pred             eeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchH
Confidence            999999988888777788999999999999999999876 8899999999997666678899999999999999999999


Q ss_pred             HHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC--CCccccccccCC
Q 010854          227 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATM  304 (499)
Q Consensus       227 ~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~--~~~~~~~g~~~~  304 (499)
                      ++..++........+++++|.++++|+.++.++.+.+.+.++..++++.||+||++..++......  .....++|.|++
T Consensus       299 ~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~  378 (559)
T PRK08315        299 MFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALP  378 (559)
T ss_pred             HHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCC
Confidence            999988876666667899999999999999999998888876667999999999987655443322  234678999999


Q ss_pred             CceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecc
Q 010854          305 TAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR  382 (499)
Q Consensus       305 ~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR  382 (499)
                      +++++|+|+. +++++.|+  .|||+| ++..+.+  ++.++..+...+      ..++||+|||+++++++|++++.||
T Consensus       379 ~~~v~i~d~~~~~~~~~g~--~GEl~v~g~~~~~g--y~~~~~~~~~~~------~~~~~~~TGD~~~~~~dg~~~~~GR  448 (559)
T PRK08315        379 HLEVKIVDPETGETVPRGE--QGELCTRGYSVMKG--YWNDPEKTAEAI------DADGWMHTGDLAVMDEEGYVNIVGR  448 (559)
T ss_pred             CcEEEEEcCccCCcCCCCC--ceEEEEECchhhhh--hcCChhHHhhcC------CCCCCEEccceEEEcCCceEEEEee
Confidence            9999999966 99999999  499999 5443332  122222221111      2467999999999999999999999


Q ss_pred             cCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcee
Q 010854          383 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK  462 (499)
Q Consensus       383 ~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  462 (499)
                      .+|+++++|.+|+|.+||+++. .+++|.+++|+++.++..+ +.++++|+...+...+.+++.++    +.+.++.|+.
T Consensus       449 ~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----l~~~l~~~~~  522 (559)
T PRK08315        449 IKDMIIRGGENIYPREIEEFLY-THPKIQDVQVVGVPDEKYG-EEVCAWIILRPGATLTEEDVRDF----CRGKIAHYKI  522 (559)
T ss_pred             ccceEEECCEEEcHHHHHHHHH-hCCCceEEEEEecCCCCCC-eEEEEEEEeCCCCCCCHHHHHHH----HHhhcccccC
Confidence            9999999999999999999997 8999999999999988766 88889998876555455555554    5568899999


Q ss_pred             eeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhhhcc
Q 010854          463 VSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       463 p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~~~~  497 (499)
                      |.+++++++||+|++||++|.+|++++......++
T Consensus       523 P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~~~  557 (559)
T PRK08315        523 PRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQA  557 (559)
T ss_pred             CcEEEEcccCCCCCCCceeHHHHHHHHHhhhchhh
Confidence            99999999999999999999999999887766554

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2.5e-57  Score=462.72  Aligned_cols=447  Identities=19%  Similarity=0.188  Sum_probs=358.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+.++++++|||+++|++++|+++.++.+++.++++..+++.++++.......      .      ..
T Consensus        47 ~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~------~~  114 (502)
T TIGR01734        47 LPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDA------V------GT  114 (502)
T ss_pred             CCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccc------c------CC
Confidence            67899999999999999999999999999999999999999999999999999999987431100      0      00


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+.               ...++.....     .........++++++++|||||||.||+|+++|.++...+.+..
T Consensus       115 ~~~~~~---------------~~~~~~~~~~-----~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~  174 (502)
T TIGR01734       115 QIITLS---------------ALEQAETSGG-----PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWML  174 (502)
T ss_pred             ceEEch---------------HhhhhhhhcC-----CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            001000               0111111110     01112234578999999999999999999999999998888777


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++..+++++...|++|..++..++.+++.|+++++.+..  .++..+++.++++++|.+.++|++++.++.......
T Consensus       175 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~  254 (502)
T TIGR01734       175 ADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQ  254 (502)
T ss_pred             HhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccc
Confidence            778889999999999999999998899999999999988753  356889999999999999999999988776554455


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      ..+++++.++++|++++.++.+.+.+.++++.+++.||+||++..+......    ......++|.+.++++++|+|+++
T Consensus       255 ~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~  334 (502)
T TIGR01734       255 ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEG  334 (502)
T ss_pred             ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCC
Confidence            5678999999999999999999999888889999999999987644432211    222345799999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      .+++.|+  .||+++ ++..+.++  ..+++.+...+.   ...+.+||+|||+|++|++ +++++||.+|+|+++|++|
T Consensus       335 ~~~~~g~--~Gel~v~g~~~~~gy--~~~~~~~~~~~~---~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v  406 (502)
T TIGR01734       335 EPLPEGE--KGEIVIVGPSVSKGY--LNNPEKTAEAFF---SHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRI  406 (502)
T ss_pred             CCCCCCC--eeEEEEccccccccc--cCCcccchHhhe---eCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEe
Confidence            9999998  599999 55444332  222332222221   1245679999999999976 9999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeC-CCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP  473 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP  473 (499)
                      +|.+||+++. .+|+|.+++++++. +.... +.++++|++......+..++.+.+++.++++|+.|+.|..++++++||
T Consensus       407 ~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP  484 (502)
T TIGR01734       407 ELEDIEFNLR-QSSYIESAVVVPKYNKDHKV-EYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLP  484 (502)
T ss_pred             CHHHHHHHHH-cCCCccEEEEEEEEcCCCCc-eEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccC
Confidence            9999999997 89999999999976 33334 788899988765444445666778888999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHH
Q 010854          474 RTASNKLLRRVLRDQIK  490 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~  490 (499)
                      +|++||++|++|++.+.
T Consensus       485 ~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       485 LTANGKIDRKALAEEVN  501 (502)
T ss_pred             CCCCCcccHHHHHHhhc
Confidence            99999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-57  Score=469.08  Aligned_cols=471  Identities=16%  Similarity=0.156  Sum_probs=361.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+|+++...      ..+.......+.
T Consensus        61 ~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~  134 (576)
T PRK05620         61 ITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPC  134 (576)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCcc
Confidence            67899999999999999999999999999999999999999999999999999999987532      222222222222


Q ss_pred             ce-EEecccCCC----CCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           82 KA-IVLPAIGND----VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        82 ~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      .. +++......    ..........+|.++......     ........++++++++|||||||.||+|+++|+++...
T Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~  209 (576)
T PRK05620        135 VRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQ  209 (576)
T ss_pred             ccEEEEecCcccccchhccccccccccHHHHhhcCCC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHH
Confidence            21 222111110    011112234567777653221     11222356789999999999999999999999988654


Q ss_pred             hhhc--ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          157 TAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       157 ~~~~--~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      ....  ...+++..++++++.+|++|.+++...+.++..|+++++.+..+++..+++.++++++|+++++|+++..++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  289 (576)
T PRK05620        210 SLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVH  289 (576)
T ss_pred             HHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHH
Confidence            4332  23467889999999999999999888888999999999887667889999999999999999999999988765


Q ss_pred             CCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-------CCccccccccCCCce
Q 010854          235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-------PQAFGAFSTATMTAG  307 (499)
Q Consensus       235 ~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-------~~~~~~~g~~~~~~~  307 (499)
                      ......+..++|.++++|+.+++.+.+.+...+ +.++++.||+||++..........       .....++|++.++++
T Consensus       290 ~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  368 (576)
T PRK05620        290 YLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLE  368 (576)
T ss_pred             hhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCcee
Confidence            433333456899999999999999998887665 688999999999986544332211       012347899999999


Q ss_pred             EEEECCCCCCCCC--CCCcceeeEe-ccccccccccccccccc----chhhcCCC------CCCCccccccCceeEeecC
Q 010854          308 LVILDECGVPYPD--DQPCVGEVGL-FPLYLGASDRLLNADHE----EVYFRGMP------MYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       308 ~~i~d~~g~~~~~--g~~~~Gei~v-~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~TGD~~~~~~~  374 (499)
                      ++++|+ |.+++.  +.  .||+++ ++..+.+  ++.+++.+    ...|...+      ....++||+|||+++++++
T Consensus       369 ~~i~~~-g~~~~~~~~~--~Gel~v~g~~~~~g--Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~d  443 (576)
T PRK05620        369 YRIVND-GQVMESTDRN--EGEIQVRGNWVTAS--YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRD  443 (576)
T ss_pred             EEEecC-CccccCCCCC--ceEEEEEcCccccc--ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCC
Confidence            999997 776643  44  599999 5444432  22222222    12222111      1234689999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  454 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  454 (499)
                      |++++.||.+|+|+++|.+|+|.+||++|. .||.|.+++|++.+++..+ +.++++++..++...+. ...+.++++++
T Consensus       444 g~l~~~GR~~d~i~~~G~~i~~~eIE~~l~-~~p~v~~~~vv~~~~~~~g-~~~~a~v~~~~~~~~~~-~~~~~l~~~l~  520 (576)
T PRK05620        444 GFLTIHDRARDVIRSGGEWIYSAQLENYIM-AAPEVVECAVIGYPDDKWG-ERPLAVTVLAPGIEPTR-ETAERLRDQLR  520 (576)
T ss_pred             ceEEEEechhhhhhcCCEEEcHHHHHHHHh-cCCCceEEEEEeccCCCcC-ceeEEEEEecCCCCccc-ccHHHHHHHHH
Confidence            999999999999999999999999999997 8999999999999998887 88888888876543221 12345666677


Q ss_pred             hhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          455 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       455 ~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++|+.|+.|..++++++||+|++||++|++|++++++.
T Consensus       521 ~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        521 DRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             hhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence            89999999999999999999999999999999998864

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.9e-57  Score=466.90  Aligned_cols=467  Identities=21%  Similarity=0.216  Sum_probs=343.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC--
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--   79 (499)
                      +++||+|+|+++|++++++++|||+++|++++|+++..+.+++.++|+.++++++|++++..      +....+....  
T Consensus        61 l~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  134 (579)
T PLN03102         61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSS  134 (579)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccc
Confidence            68999999999999999999999999999999999999999999999999999999987532      1222221111  


Q ss_pred             -----CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           80 -----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        80 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                           ....+++.....  .........++.++.......+...........++++++++|||||||.||+|+++|.++.
T Consensus       135 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~  212 (579)
T PLN03102        135 EDSNLNLPVIFIHEIDF--PKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAY  212 (579)
T ss_pred             cccccCceEEEeccccc--ccCCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHH
Confidence                 112222211110  0011123456666655432211110011112356899999999999999999999999865


Q ss_pred             HHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          155 RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      ...........+...+++++.+|++|..++...+.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  291 (579)
T PLN03102        213 LSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKG  291 (579)
T ss_pred             HHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeec-cCChHHHHHHHHHcCCeEEEeChHHHHHHHhC
Confidence            54443333445677788999999999999887778889999999886 45678899999999999999999999999887


Q ss_pred             CCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC-------------CCccccccc
Q 010854          235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-------------PQAFGAFST  301 (499)
Q Consensus       235 ~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~-------------~~~~~~~g~  301 (499)
                      ........++++.++++|+.+++.+..++.. + +..+++.||+||+++.+.......             ....+..+.
T Consensus       292 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  369 (579)
T PLN03102        292 NSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSIL  369 (579)
T ss_pred             cccccCCcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccc
Confidence            5444444567888999999999888888754 4 788999999999886433221100             001122223


Q ss_pred             cCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEE
Q 010854          302 ATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  379 (499)
Q Consensus       302 ~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~  379 (499)
                      +.+  .+++.| +.+++++.+....|||+| ++..+.+  ++.+++.+...|       .++||+|||+|++|++|++++
T Consensus       370 ~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~G--Y~~~~~~t~~~f-------~~gw~~TGDlg~~d~dG~l~i  438 (579)
T PLN03102        370 GLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKG--YLKNPKATSEAF-------KHGWLNTGDVGVIHPDGHVEI  438 (579)
T ss_pred             ccc--ceEEeccccccccCCCCCCceEEEEECcchhhh--hcCChhhhHhhh-------ccCceecCceEEEcCCCeEEE
Confidence            333  456666 556666642111599999 5444432  222333333333       246999999999999999999


Q ss_pred             ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHH------HHHHHHHHH
Q 010854          380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK------LKMIFSKAI  453 (499)
Q Consensus       380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------l~~~~~~~~  453 (499)
                      .||.+|+|+++|++|+|.+||+++. .||.|.+++|++++++..+ +.++++|++.++...+...      -...+++.+
T Consensus       439 ~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  516 (579)
T PLN03102        439 KDRSKDIIISGGENISSVEVENVLY-KYPKVLETAVVAMPHPTWG-ETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYC  516 (579)
T ss_pred             EeccCcEEEECCEEECHHHHHHHHH-hCCCcceeEEEeccCcccc-ceeEEEEEecCcccccccccccccccHHHHHHHH
Confidence            9999999999999999999999997 8999999999999998887 8999999987654332111      123466667


Q ss_pred             HhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       454 ~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +++|+.|+.|..+++++++|+|++||++|++|++++.+.
T Consensus       517 ~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~  555 (579)
T PLN03102        517 RENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGL  555 (579)
T ss_pred             HhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHh
Confidence            788999999999999999999999999999999988663

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-57  Score=464.55  Aligned_cols=461  Identities=21%  Similarity=0.215  Sum_probs=364.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++.+++++...      ..........+.
T Consensus        64 ~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  137 (542)
T PRK07786         64 VGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPL  137 (542)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCc
Confidence            67899999999999999999999999999999999999999999999999999999987532      111111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++.....     ......+++++......     .........+++++++|||||||.||+|.++|+++...+....
T Consensus       138 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~  207 (542)
T PRK07786        138 LSTVVVAGGS-----SDDSVLGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCL  207 (542)
T ss_pred             cceEEEecCC-----CcccccCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHH
Confidence            1111111110     01133566666543322     1112234567899999999999999999999999988877666


Q ss_pred             eeccC-cCCcEEEeecCccccchhhhhhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDL-KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++ ..++++++..|++|.+++..++.++..|+++++.+ ...++..+++.++++++|.+.++|+++..+........
T Consensus       208 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  287 (542)
T PRK07786        208 RTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP  287 (542)
T ss_pred             HhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc
Confidence            66666 67889999999999999888999999999999865 24578899999999999999999999999988765444


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      .+ .++|.+++||+++++++.+.+.+.+++..+++.||+||++.+.+..... .....+++|+|++++.++|+|+++.++
T Consensus       288 ~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~  366 (542)
T PRK07786        288 RD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV  366 (542)
T ss_pred             cC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCC
Confidence            33 3799999999999999999999888889999999999998654433222 223457899999999999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  +|||++ ++..+.+  ++.+++.+...|.       ++||+|||+++++++|++++.||.+|+|+++|.+|+|.
T Consensus       367 ~~g~--~Gel~v~g~~~~~g--y~~~~~~~~~~f~-------~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~  435 (542)
T PRK07786        367 PVGE--VGEIVYRAPTLMSG--YWNNPEATAEAFA-------GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCA  435 (542)
T ss_pred             cCCC--ceEEEEEChhhhhh--hcCCHHHHHHHhh-------CCcccccceEEEcCCceEEEEecccceEEeCCEEECHH
Confidence            9998  599999 5544432  2223333332331       46999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      +||+++. .+++|.+++|++..+...+ +.++++++..++.. ...    +.+.+.++++++.|+.|..++++++||+|+
T Consensus       436 eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~  509 (542)
T PRK07786        436 EVENVLA-SHPDIVEVAVIGRADEKWG-EVPVAVAAVRNDDAALTL----EDLAEFLTDRLARYKHPKALEIVDALPRNP  509 (542)
T ss_pred             HHHHHHH-hCCCccEEEEEeccCcccC-ceEEEEEEECCCCCCCCH----HHHHHHHHhhccCCCCCCEEEEeccCCCCC
Confidence            9999996 8999999999998877776 88888888765432 233    345555777899999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhhhc
Q 010854          477 SNKLLRRVLRDQIKHELSVR  496 (499)
Q Consensus       477 ~GKv~r~~l~~~~~~~~~~~  496 (499)
                      +||++|++|++.+.+....+
T Consensus       510 ~GKv~r~~L~~~~~~~~~~~  529 (542)
T PRK07786        510 AGKVLKTELRERYGACVNVE  529 (542)
T ss_pred             cccccHHHHHHHHHhhhchh
Confidence            99999999999998876554

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=6.5e-57  Score=462.16  Aligned_cols=451  Identities=19%  Similarity=0.199  Sum_probs=353.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC-C
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++..++++++++.++++.....      .+....... .
T Consensus        68 i~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~  141 (542)
T PRK06155         68 VKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLP  141 (542)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccC
Confidence            689999999999999999999999999999999999999999999999999999999875421      111111111 1


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ....+.. ..... .   .....+..... ...   ..........++++++++|||||||.||+|+++|+++.......
T Consensus       142 ~~~~~~~-~~~~~-~---~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~  212 (542)
T PRK06155        142 LPAVWLL-DAPAS-V---SVPAGWSTAPL-PPL---DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNS  212 (542)
T ss_pred             cceEEEe-cCccc-c---ccccccchhhh-ccc---CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHH
Confidence            1111111 11100 0   00011111100 000   01111223467899999999999999999999999998887777


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ...+++++++++++.+|++|..++..++.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......
T Consensus       213 ~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  291 (542)
T PRK06155        213 AEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD  291 (542)
T ss_pred             HHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc
Confidence            77788999999999999999999988899999999999876 46789999999999999999999999999888766666


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      ..++++.++.+|  +++.+...+.+.+ +..+++.||+||++..+....  .....+++|.+.++++++|+|+++++++.
T Consensus       292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~  366 (542)
T PRK06155        292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPD  366 (542)
T ss_pred             ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCC
Confidence            677898877666  4577777777665 788999999999987654432  23456789999999999999999999999


Q ss_pred             CCCcceeeEe-ccc---ccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          321 DQPCVGEVGL-FPL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       321 g~~~~Gei~v-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      |+  .|||++ ++.   .+.+  +..+++.+...+       .++||+|||+|+++++|++++.||.+|+|+++|.+|+|
T Consensus       367 g~--~Gei~v~~~~~~~~~~G--Y~~~~~~~~~~~-------~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p  435 (542)
T PRK06155        367 GE--PGELLLRADEPFAFATG--YFGMPEKTVEAW-------RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISS  435 (542)
T ss_pred             CC--ceEEEEecCCccccchh--hcCCHHHHHHhh-------cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECH
Confidence            98  599999 431   2222  222222222222       25799999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||+++. .+|+|.+++|++++++..+ +.+.++++...+...+..++.++    +.++|+.|+.|..|++++++|+|+
T Consensus       436 ~eIE~~l~-~~~~V~~~~v~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~----~~~~l~~~~~P~~i~~~~~iP~t~  509 (542)
T PRK06155        436 FEVEQVLL-SHPAVAAAAVFPVPSELGE-DEVMAAVVLRDGTALEPVALVRH----CEPRLAYFAVPRYVEFVAALPKTE  509 (542)
T ss_pred             HHHHHHHH-hCCCeeEEEEEeecccccC-ceEEEEEEECCCCCCCHHHHHHH----HHhhCcCccCCcEEEEeccCCCCc
Confidence            99999996 8999999999999987777 78888888877666666555555    556889999999999999999999


Q ss_pred             CcHHHHHHHHHHHH
Q 010854          477 SNKLLRRVLRDQIK  490 (499)
Q Consensus       477 ~GKv~r~~l~~~~~  490 (499)
                      +||++|++|++++-
T Consensus       510 ~GKi~r~~l~~~~~  523 (542)
T PRK06155        510 NGKVQKFVLREQGV  523 (542)
T ss_pred             ccceeHHHHHhhcc
Confidence            99999999998764

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.5e-57  Score=457.29  Aligned_cols=437  Identities=20%  Similarity=0.241  Sum_probs=347.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+++++.+++++++++.+|+++.....                
T Consensus        44 ~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----------------  107 (488)
T PRK09088         44 CVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAG----------------  107 (488)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc----------------
Confidence            5789999999999999999999999999999999999999999999999999999998743210                


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                      ......++++......  . ..........+++++++|||||||.||++.++|+++...+....
T Consensus       108 ----------------~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~  168 (488)
T PRK09088        108 ----------------RTDVEDLAAFIASADA--L-EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFG  168 (488)
T ss_pred             ----------------cccccchhhhhhhccc--c-ccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence                            0001122222211111  0 01111234568899999999999999999999999987776666


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHH--HhCCeEEecchHHHHHHHccCCCC
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ....+..+|++++.+|++|.+++.. ++.++..|+++++.+ .+.+..++..+.  ++++|+++++|++++.+.+.....
T Consensus       169 ~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~  247 (488)
T PRK09088        169 VLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFD  247 (488)
T ss_pred             HhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcC
Confidence            5567889999999999999999876 778888899988875 456777777775  489999999999999998775545


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC--CCCccccccccCCCceEEEECCCCC
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ...+++++.+++||++++......+...  ++.+++.||+||++.+.......  .....+++|.|.|+++++|+|+++.
T Consensus       248 ~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~  325 (488)
T PRK09088        248 AAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGN  325 (488)
T ss_pred             ccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCC
Confidence            5567899999999999988877666543  78899999999998654322111  1234578999999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  .|||++ ++..+.+  +..+++.+...+      .+++||+|||+|+++++|++++.||.+|+|+.+|.+|+
T Consensus       326 ~~~~g~--~Gel~v~~~~~~~g--Y~~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~  395 (488)
T PRK09088        326 DCPAGV--PGELLLRGPNLSPG--YWRRPQATARAF------TGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVY  395 (488)
T ss_pred             CCcCCC--ceEEEEECCccchh--hcCChhhhhhhh------cCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEEC
Confidence            999998  499999 5544332  111222222112      34689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.+||++|. .+++|.++++++++++..+ +..++++++.++...+.+++.+    .+++.++.|+.|..++++++||+|
T Consensus       396 ~~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~iP~t  469 (488)
T PRK09088        396 PAEIEAVLA-DHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRS----HLSTRLAKYKVPKHLRLVDALPRT  469 (488)
T ss_pred             HHHHHHHHH-hCCCcceEEEEeCCCccCC-ceeEEEEEECCCCCCCHHHHHH----HHHhhCcCCCCCCEEEEcccCCCC
Confidence            999999996 8999999999999987777 7888888887654444444444    466788999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 010854          476 ASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~~  492 (499)
                      ++||++|++|++++.+.
T Consensus       470 ~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        470 ASGKLQKARLRDALAAG  486 (488)
T ss_pred             CCCceeHHHHHHHHHhc
Confidence            99999999999988754

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.1e-57  Score=515.47  Aligned_cols=469  Identities=16%  Similarity=0.130  Sum_probs=354.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC--
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--   79 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++++++.+++++++++.+|++....   .............  
T Consensus       292 v~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~  368 (1389)
T TIGR03443       292 IKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAG---TLDQLVRDYIDKELE  368 (1389)
T ss_pred             CCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEecccc---ccchhhhhhhhcccc
Confidence            68999999999999999999999999999999999999999999999999999999876320   0001111110000  


Q ss_pred             --CCc-eEEecccCCCCCCCCCcCCCC--HHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           80 --PLK-AIVLPAIGNDVGIPLREQDLS--WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        80 --~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                        ... .+.+......     ......  ..++......  ...........++++++++|||||||.||||+++|+++.
T Consensus       369 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~  441 (1389)
T TIGR03443       369 LRTEIPALALQDDGSL-----VGGSLEGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLA  441 (1389)
T ss_pred             cccccceEEecccccc-----cccccccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHH
Confidence              000 0111000000     000000  0011110000  000111123457899999999999999999999999999


Q ss_pred             HHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCC--ChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854          155 RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWR  232 (499)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~  232 (499)
                      +.+.+....+++.++|+++...|++|..++..++.+++.|+++++.+...  ++..+++.|+++++|++.++|++++.|.
T Consensus       442 ~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~  521 (1389)
T TIGR03443       442 YYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLS  521 (1389)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence            99888888888999999999999999999888999999999999986432  4678999999999999999999999887


Q ss_pred             ccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------CCcccccccc
Q 010854          233 NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTA  302 (499)
Q Consensus       233 ~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------~~~~~~~g~~  302 (499)
                      ...   ...++++|.++++|+++++.....+....++.++++.||+||++..........          .....++|.|
T Consensus       522 ~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  598 (1389)
T TIGR03443       522 AQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKG  598 (1389)
T ss_pred             hcc---cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCc
Confidence            543   234789999999999999998888877777889999999999876544322110          1124578999


Q ss_pred             CCCceEEEECC--CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCC----------------------C
Q 010854          303 TMTAGLVILDE--CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM----------------------Y  357 (499)
Q Consensus       303 ~~~~~~~i~d~--~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~  357 (499)
                      +++++++|+|+  .+++++.|+  +|||+| ++..+.+  ++.+++.+...|...+.                      .
T Consensus       599 ~~~~~~~ivd~~~~~~~~~~G~--~GEL~i~G~~v~~G--Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1389)
T TIGR03443       599 MKNVQLLVVNRNDRTQTCGVGE--VGEIYVRAGGLAEG--YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLG  674 (1389)
T ss_pred             cCCCEEEEECCccCCCcCCCCC--ceEEEecccccchh--cCCChhHhhhhccCCcccCcccccccccccccccccccCC
Confidence            99999999994  457899998  599999 6554443  33345555444432221                      1


Q ss_pred             CCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC
Q 010854          358 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG  437 (499)
Q Consensus       358 ~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~  437 (499)
                      .+++||+|||+|++++||+|+++||.||+||++|++|+|.|||++|. .||.|.+++|++..+...+ +.+++++++..+
T Consensus       675 ~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~~  752 (1389)
T TIGR03443       675 PRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQDK  752 (1389)
T ss_pred             CccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccCc
Confidence            24689999999999999999999999999999999999999999996 8999999999988877666 889999987632


Q ss_pred             CC-CC---------------------HHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHH
Q 010854          438 FT-SQ---------------------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  489 (499)
Q Consensus       438 ~~-~~---------------------~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~  489 (499)
                      .. ..                     ..+..+.++++++++|+.|++|..++++++||+|++|||+|++|+..+
T Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~  826 (1389)
T TIGR03443       753 SDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPD  826 (1389)
T ss_pred             cccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCc
Confidence            11 00                     012345677778899999999999999999999999999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5e-58  Score=550.42  Aligned_cols=445  Identities=16%  Similarity=0.158  Sum_probs=365.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++........         .....
T Consensus      3142 v~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~---------~~~~~ 3212 (3956)
T PRK12467       3142 VGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLP---------APAGD 3212 (3956)
T ss_pred             CCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcc---------cccCC
Confidence            789999999999999999999999999999999999999999999999999999999875321100         00000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+.                  +.....    ...........++++|+++|||||||.||||+++|+++.+.+.+..
T Consensus      3213 ~~~~~~------------------~~~~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 3270 (3956)
T PRK12467       3213 TALTLD------------------RLDLNG----YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIA 3270 (3956)
T ss_pred             ceeeec------------------chhhcc----cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHH
Confidence            111110                  000000    0111122345689999999999999999999999999999999888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++|+++.+.|++|..+...++.+++.|+++++.+. ..+++.+++.|+++++|++.++|+++..+++...  ..
T Consensus      3271 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~ 3348 (3956)
T PRK12467       3271 EAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GA 3348 (3956)
T ss_pred             HhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--cc
Confidence            88999999999999999999998889999999999999873 1578899999999999999999999999987543  34


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----CCccccccccCCCceEEEECCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      +++++|.+++|||++++++.+.+...++++.+++.||+||++..++......    .....++|+|+++++++|+|+.++
T Consensus      3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 3428 (3956)
T PRK12467       3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLN 3428 (3956)
T ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCC
Confidence            5788999999999999999999887777788999999999987655332211    123468999999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCC-CCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      +++.|+  +|||+| +++...+  ++.+++.+...|...++ ..+.+||+|||+|++++||+|+++||.||+||++|++|
T Consensus      3429 ~vp~G~--~GEL~i~G~~v~~G--Y~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rI 3504 (3956)
T PRK12467       3429 PVPVGV--AGELYIGGVGLARG--YHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI 3504 (3956)
T ss_pred             CCCCCC--CceEEEcchhhhhh--ccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEee
Confidence            999999  599999 6655543  44456666666665555 46788999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.|||++|. ++|+|.+++|+...+ ..+ +++++||+.........    +.++++++++|+.|+.|..++++++||+
T Consensus      3505 e~~EIE~~l~-~~p~V~~a~v~~~~~-~~~-~~lva~v~~~~~~~~~~----~~l~~~l~~~Lp~y~vP~~~~~l~~lP~ 3577 (3956)
T PRK12467       3505 ELGEIEARLL-QHPSVREAVVLARDG-AGG-KQLVAYVVPADPQGDWR----ETLRDHLAASLPDYMVPAQLLVLAAMPL 3577 (3956)
T ss_pred             cHHHHHHHHh-hCcccceEEEEEecC-CCC-cEEEEEEeCCCCCcccH----HHHHHHHhccCChhhCCCeeeeeccCCC
Confidence            9999999996 899999999998754 345 88999999876433333    3455557789999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 010854          475 TASNKLLRRVLRDQIK  490 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~  490 (499)
                      |++||++|++|++...
T Consensus      3578 t~~GKidR~~L~~~~~ 3593 (3956)
T PRK12467       3578 GPNGKVDRKALPDPDA 3593 (3956)
T ss_pred             CCCCccchhhcCCCCc
Confidence            9999999999987543

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-56  Score=456.92  Aligned_cols=445  Identities=20%  Similarity=0.178  Sum_probs=356.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+++++.....          . ....
T Consensus        49 ~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~-~~~~  117 (497)
T PRK06145         49 IGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAI----------V-ALET  117 (497)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhh----------h-hccc
Confidence            6789999999999999999999999999999999999999999999999999999998753210          0 0001


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+... ..         ..+..+.....     .........++++++++|||||||.||+|+++|+++...+....
T Consensus       118 ~~~~~~~~-~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  182 (497)
T PRK06145        118 PKIVIDAA-AQ---------ADSRRLAQGGL-----EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHV  182 (497)
T ss_pred             ceEEecCc-cc---------chhHHHhccCC-----CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            11111100 00         01111111100     01112234678999999999999999999999999887666665


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..+++..+++++...|++|.+++.. .+.+++.|+++++.+ .+++..+++.++++++|++.++|+++..++........
T Consensus       183 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~  261 (497)
T PRK06145        183 IALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRF  261 (497)
T ss_pred             HhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccc
Confidence            6678899999999999999998865 677889999998876 56889999999999999999999999999987766667


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      +++++|.+++||++++..+.+++...+.+..+++.||+||++......... .....+++|+|+++++++++|+++++++
T Consensus       262 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~  341 (497)
T PRK06145        262 DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLP  341 (497)
T ss_pred             ccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCC
Confidence            788999999999999999999998888778899999999998754433222 2234578999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  .||+++ ++..+.+  ++.+++.+...+.       ++||+|||+++++++|++++.||.+|+||++|.+++|.+
T Consensus       342 ~~~--~Gel~v~g~~~~~G--y~~~~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~  410 (497)
T PRK06145        342 PNM--KGEICMRGPKVTKG--YWKDPEKTAEAFY-------GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSE  410 (497)
T ss_pred             CCC--ceEEEEECcchhhh--hcCChHHHHHHHh-------CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHH
Confidence            998  599999 5443332  2222222222221       469999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. .+++|.+++|++.+++..+ +.+++++++.++...+.+++.++    ++++|++|+.|..++++++||+|++|
T Consensus       411 IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~p~~i~~v~~iP~t~~G  484 (497)
T PRK06145        411 VERVIY-ELPEVAEAAVIGVHDDRWG-ERITAVVVLNPGATLTLEALDRH----CRQRLASFKVPRQLKVRDELPRNPSG  484 (497)
T ss_pred             HHHHHH-hCCCeeEEEEEecCCCccC-ceEEEEEEECCCCCCCHHHHHHH----HHHhhhcCCCCCEEEEeccCCCCCcc
Confidence            999996 8999999999999988777 88999999876555555555554    55678899999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010854          479 KLLRRVLRDQIK  490 (499)
Q Consensus       479 Kv~r~~l~~~~~  490 (499)
                      |++|++|++++.
T Consensus       485 Ki~r~~l~~~~~  496 (497)
T PRK06145        485 KVLKRVLRDELN  496 (497)
T ss_pred             cccHHHHHHHhc
Confidence            999999998764

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=8.4e-57  Score=460.77  Aligned_cols=454  Identities=19%  Similarity=0.194  Sum_probs=352.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++++++..+.+++.++++.++++.++++..... ..............+.
T Consensus        70 ~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~  148 (527)
T TIGR02275        70 IGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPT  148 (527)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCc
Confidence            679999999999999999999999999999999999999999999999999999999864210 0000001111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++......       ........+.....     ........++++++++|||||||.||+|.++|.++..++....
T Consensus       149 ~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  216 (527)
T TIGR02275       149 LRNIIVAGQTR-------VEAELFLWLESPAE-----PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV  216 (527)
T ss_pred             ceEEEEecCCC-------CcchhhHHhhCcCc-----cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHH
Confidence            11111111000       00111111111111     1112244678999999999999999999999999998888777


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+.++.+|+++..+|++|.+++..  ++.++..|+++++.+ .+++..+++.++++++|++.++|+++..|.+......
T Consensus       217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  295 (527)
T TIGR02275       217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR  295 (527)
T ss_pred             hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC
Confidence            7788899999999999999998763  788899999998865 5678899999999999999999999999988776666


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~~~  318 (499)
                      .+++++|.+++||+.++.++...+.+.+ +.++++.||+||++..+............++|+|+ ++..++|+|++|+++
T Consensus       296 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~  374 (527)
T TIGR02275       296 YDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPV  374 (527)
T ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCC
Confidence            7788999999999999999999988776 78899999999965433222211223446889999 589999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  .|||++ ++..+.+  ++.+++.+...+      ..++||+|||+++++++|++++.||.+|+|+++|++|+|.
T Consensus       375 ~~g~--~Gei~v~g~~~~~g--Y~~~~~~~~~~~------~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~  444 (527)
T TIGR02275       375 APGE--TGMLLTRGPYTFRG--YYKAPEHNAAAF------DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAE  444 (527)
T ss_pred             CCCC--ceEEEecCCccchh--hcCChhHhHhhc------CcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHH
Confidence            9998  499999 5554432  222222222222      3467999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||++|. .+|+|.+++|++.++...+ +.++++|+..++ ..+..++.+++++   .+++.|+.|..++++++||+|++
T Consensus       445 eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~vv~~~~-~~~~~~l~~~l~~---~~l~~~~~P~~i~~v~~iP~t~s  518 (527)
T TIGR02275       445 EIENLLL-AHPAVHDAALVSMPDELLG-EKSCAFIVVRDP-ALKAAQLRRFLRE---RGLAEYKLPDRVEFIDSLPLTAV  518 (527)
T ss_pred             HHHHHHH-hCCCceEEEEEecCCcccc-cEEEEEEEECCC-CCCHHHHHHHHHh---CCCccccCCCEEEEeccCCCCCc
Confidence            9999997 9999999999999998877 889999988765 3455555555432   25999999999999999999999


Q ss_pred             cHHHHHHHH
Q 010854          478 NKLLRRVLR  486 (499)
Q Consensus       478 GKv~r~~l~  486 (499)
                      ||++|+.|+
T Consensus       519 GKv~r~~L~  527 (527)
T TIGR02275       519 GKIDKKALR  527 (527)
T ss_pred             cceeHHhcC
Confidence            999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-57  Score=469.93  Aligned_cols=450  Identities=21%  Similarity=0.204  Sum_probs=336.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEc-CCCCC--HHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|+++....      ........
T Consensus        89 ~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~  162 (612)
T PRK12476         89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAE------AVEGFLRN  162 (612)
T ss_pred             cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHH------HHHHHHhh
Confidence            5899999999999999999999999999999999 56665  789999999999999999875321      11111111


Q ss_pred             CC----CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           79 AP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        79 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      ..    ...+.+.  . .               ....     ..........++++++++|||||||.||||+++|+++.
T Consensus       163 ~~~~~~~~~i~~~--~-~---------------~~~~-----~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~  219 (612)
T PRK12476        163 LPRLRRPRVIAID--A-I---------------PDSA-----GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVG  219 (612)
T ss_pred             cccccCceEEEec--c-c---------------cccc-----cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHH
Confidence            11    1111111  0 0               0000     00111123456899999999999999999999999998


Q ss_pred             HHhhhcceecc-CcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CC--ChhHHHHHHH--HhCCeEEecchHHH
Q 010854          155 RCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLV  228 (499)
Q Consensus       155 ~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~--~~~~~~~~i~--~~~~t~l~~~P~~l  228 (499)
                      ..+......++ +.+++++++++|++|.+++...+.+++.|++++++.+ .+  ++..+++.++  +++++.+..+|+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~  299 (612)
T PRK12476        220 TNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFA  299 (612)
T ss_pred             HHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHH
Confidence            77766655566 7888999999999999999876656566666666643 22  6788999995  58999999999998


Q ss_pred             HHHHccCC----CCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCC-------
Q 010854          229 KAWRNTNC----LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ-------  292 (499)
Q Consensus       229 ~~l~~~~~----~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~-------  292 (499)
                      ..++....    ....+++++| +++||+++++++.+.+.+.+.     ...+++.||+||++..+.......       
T Consensus       300 ~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  378 (612)
T PRK12476        300 YEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYL  378 (612)
T ss_pred             HHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEE
Confidence            88776421    1345688999 999999999999998887652     245999999999876543322110       


Q ss_pred             -------------------CCccccccccCCCceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhh
Q 010854          293 -------------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYF  351 (499)
Q Consensus       293 -------------------~~~~~~~g~~~~~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~  351 (499)
                                         ....+++|+|+++++++|+|++ |++++.|+  .|||++ ++..+.  +++.+++.+...|
T Consensus       379 ~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~--~GEl~v~g~~v~~--GY~~~~~~t~~~f  454 (612)
T PRK12476        379 DREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE--VGEIWLHGDNIGR--GYWGRPEETERTF  454 (612)
T ss_pred             cHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC--EEEEEEcCCcccc--cccCChHHHHHHH
Confidence                               0123578999999999999966 99999998  599999 554443  2444455554445


Q ss_pred             cCCC------------CCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCcccee--eeEEE
Q 010854          352 RGMP------------MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAIS  417 (499)
Q Consensus       352 ~~~~------------~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~--~~v~~  417 (499)
                      ...+            ...+++||+|||+|+++ +|+|+++||.||+||++|++|+|.+||++|.+.||.|.+  +++++
T Consensus       455 ~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~  533 (612)
T PRK12476        455 GAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFT  533 (612)
T ss_pred             hhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEE
Confidence            3100            01234699999999985 999999999999999999999999999999645899999  67777


Q ss_pred             eCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCcee-eeEEEEcC--CCCCCCCcHHHHHHHHHHHHh
Q 010854          418 VSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFK-VSLVKVVP--EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       418 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~-p~~~~~~~--~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++++. + +++++++++.++.. .+.+++.+++++++...   |+. |..+++++  +||+|++||++|++|++++.+
T Consensus       534 ~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~---~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        534 VPAED-N-ERLVIVAERAAGTSRADPAPAIDAIRAAVSRR---HGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             ecCCC-c-ceEEEEEEecCCcccccHHHHHHHHHHHHHHh---hCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence            77766 5 88899999877643 46677777777766543   455 57788876  699999999999999998754

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.8e-56  Score=456.67  Aligned_cols=450  Identities=20%  Similarity=0.236  Sum_probs=358.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+..++..+++.++++++|+++...      ..+..+......
T Consensus        50 ~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  123 (504)
T PRK07514         50 VKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGA  123 (504)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCC
Confidence            68999999999999999999999999999999999999999999999999999999987532      111111111111


Q ss_pred             c-eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      . ...+..  .        ....+.+.....     +..........+++++++|||||||.||++.++|+++...+...
T Consensus       124 ~~~~~~~~--~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~  188 (504)
T PRK07514        124 PHVETLDA--D--------GTGSLLEAAAAA-----PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTL  188 (504)
T ss_pred             ceEEEecC--C--------CcccHHHhhhhc-----CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHH
Confidence            1 111110  0        111222222111     11122334567999999999999999999999999999888777


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ...++++.+|++++.+|++|..++.. ++.+++.|+++++.+ ..+++.+++.+  .++|++.++|+++..++.......
T Consensus       189 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~  265 (504)
T PRK07514        189 VDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP-KFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTR  265 (504)
T ss_pred             HHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC-CCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCc
Confidence            77778899999999999999999865 888999999999886 45788888888  479999999999999988766666


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~  318 (499)
                      ..++++|.+++||+++++++.+.+...+ +..+++.||+||++..... .........++|.|+++++++|+| ++++++
T Consensus       266 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~  343 (504)
T PRK07514        266 EAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSN-PYDGERRAGTVGFPLPGVSLRVTDPETGAEL  343 (504)
T ss_pred             ccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccC-CccccccCcccccCCCCcEEEEEECCCCCCC
Confidence            6788999999999999999999988776 6789999999998864432 222233457899999999999999 999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  .||+++ ++....+  ++.++..+...+      .+++||+|||+++++++|++++.||.+|+||++|.+|+|.
T Consensus       344 ~~g~--~Gel~i~~~~~~~g--y~~~~~~~~~~~------~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~  413 (504)
T PRK07514        344 PPGE--IGMIEVKGPNVFKG--YWRMPEKTAEEF------RADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPK  413 (504)
T ss_pred             CCCC--ceEEEEecCCcccc--ccCCchhhhhhc------ccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHH
Confidence            9998  499999 5544432  222222222222      2356999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||+++. .+++|.+++|++.+++..+ +.++++++...+...+.+++.+    .++++|+.++.|..+++++++|+|++
T Consensus       414 ~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~~p~t~~  487 (504)
T PRK07514        414 EVEGEID-ELPGVVESAVIGVPHPDFG-EGVTAVVVPKPGAALDEAAILA----ALKGRLARFKQPKRVFFVDELPRNTM  487 (504)
T ss_pred             HHHHHHH-hCCCeeEEEEEeCCCCCcC-ceEEEEEEECCCCCCCHHHHHH----HHHhhcccCCCCcEEEEeccCCCCCC
Confidence            9999996 8999999999999887777 8889999987765555555544    45567899999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhh
Q 010854          478 NKLLRRVLRDQIKHEL  493 (499)
Q Consensus       478 GKv~r~~l~~~~~~~~  493 (499)
                      ||++|++|++.+++.+
T Consensus       488 gK~~r~~l~~~~~~~~  503 (504)
T PRK07514        488 GKVQKNLLREQYADLF  503 (504)
T ss_pred             cceeHHHHHHHHHhhc
Confidence            9999999999887653

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.9e-57  Score=474.91  Aligned_cols=471  Identities=17%  Similarity=0.137  Sum_probs=343.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|+++|++++|||+++|++++|+++.++++++.++|++++++++|++....      ..+.......+.
T Consensus       128 ~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~  201 (696)
T PLN02387        128 HNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLET  201 (696)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCC
Confidence            68999999999999999999999999999999999999999999999999999999987532      222222222222


Q ss_pred             ceEEecccCCCCC------CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           82 KAIVLPAIGNDVG------IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        82 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      ...++..+.....      ........++.++...+...+    .......++|+++|+|||||||.||||++||+++..
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~  277 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENP----VDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVA  277 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCC----CCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHH
Confidence            2223322211100      001112345677665443211    112234679999999999999999999999999988


Q ss_pred             Hhhhcceec-cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCC-------hhHHHHHHHHhCCeEEecchHH
Q 010854          156 CTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSL  227 (499)
Q Consensus       156 ~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~P~~  227 (499)
                      .+......+ .+.++|++++++|++|.+++...+.++..|+++.+......       ...++..+++++||++.++|.+
T Consensus       278 ~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~  357 (696)
T PLN02387        278 TVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAI  357 (696)
T ss_pred             HHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHH
Confidence            877665443 57889999999999999998765556677777665432111       1345678999999999999999


Q ss_pred             HHHHHccCCCC-------------------------------c---------------ccc-cceeEEEeecCCCChhhH
Q 010854          228 VKAWRNTNCLE-------------------------------G---------------LDW-TKIRSFASTGETSNVDDD  260 (499)
Q Consensus       228 l~~l~~~~~~~-------------------------------~---------------~~l-~~l~~i~~~G~~l~~~~~  260 (499)
                      ++.+.+.....                               .               ..+ +++|.+++||+++++++.
T Consensus       358 l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~  437 (696)
T PLN02387        358 LDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQ  437 (696)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH
Confidence            99886531100                               0               001 589999999999999998


Q ss_pred             HHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCC---CCCCCcceeeEe-ccccc
Q 010854          261 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY---PDDQPCVGEVGL-FPLYL  335 (499)
Q Consensus       261 ~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~---~~g~~~~Gei~v-~~~~~  335 (499)
                      +++...+ ++.+++.||+||+++..+.... .....+++|.|+|+++++|+| +++...   .++.  .|||+| ++..+
T Consensus       438 ~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p--~GEi~vrGp~v~  513 (696)
T PLN02387        438 RFINICL-GAPIGQGYGLTETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMP--RGEIVIGGPSVT  513 (696)
T ss_pred             HHHHHHc-CCCeeEeechhhcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCC--CceEEeccCccc
Confidence            8777655 7899999999999865554433 233568999999999999998 444322   1222  499999 66655


Q ss_pred             ccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeee
Q 010854          336 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETA  414 (499)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~  414 (499)
                      .+  ++.+++.+...|...  .+|.+||+|||+|++|++|+|++.||.||+||. +|++|+|.+||++|. .||.|.+++
T Consensus       514 ~G--Y~~~pe~T~~~f~~d--~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~  588 (696)
T PLN02387        514 LG--YFKNQEKTDEVYKVD--ERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIM  588 (696)
T ss_pred             ch--hcCCHHHHhhhhccc--cCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEE
Confidence            53  444555555554211  124469999999999999999999999999997 699999999999996 899999999


Q ss_pred             EEEeCCCCCCceEEEEEEEecCCC----------C-CC------HHHHHHHHHHHH-----HhhcCCceeeeEEEEcCCC
Q 010854          415 AISVSPAGGGPEVLVIFVVLKKGF----------T-SQ------PDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPEF  472 (499)
Q Consensus       415 v~~~~~~~~~~~~~~~~v~~~~~~----------~-~~------~~~l~~~~~~~~-----~~~l~~~~~p~~~~~~~~i  472 (499)
                      |++.+.   . ..++|+|++....          . .+      ..++.+.+.+.+     +.+|..|++|++|.++++-
T Consensus       589 V~g~~~---~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~  664 (696)
T PLN02387        589 VHADPF---H-SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEP  664 (696)
T ss_pred             EEecCC---c-ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCC
Confidence            998652   2 6678888876421          0 01      122233333323     3479999999999998753


Q ss_pred             C------CCCCcHHHHHHHHHHHHhhhhh
Q 010854          473 P------RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       473 P------~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      .      +|++.|+.|+.+++.|++++++
T Consensus       665 ~t~~~g~lT~t~K~~R~~i~~~y~~~i~~  693 (696)
T PLN02387        665 WTPESGLVTAALKLKREQIRKKFKDDLKK  693 (696)
T ss_pred             CCCCCCcCChhhhhhhHHHHHHHHHHHHH
Confidence            2      5888999999999999999875

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-56  Score=460.33  Aligned_cols=459  Identities=20%  Similarity=0.229  Sum_probs=351.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+++++.....      ..........
T Consensus        72 i~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~  145 (562)
T PRK12492         72 LVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGI  145 (562)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCc
Confidence            6899999999999999999999999999999999999999999999999999999997643210      1111000000


Q ss_pred             ceEEecc-------------cC--C----CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 010854           82 KAIVLPA-------------IG--N----DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE  142 (499)
Q Consensus        82 ~~~~~~~-------------~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  142 (499)
                      .......             ..  .    ............|+++......    ....+.....+++++++|||||||.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~  221 (562)
T PRK12492        146 EYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGL  221 (562)
T ss_pred             eEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCC
Confidence            0000000             00  0    0000001123455555443221    1112234567899999999999999


Q ss_pred             CceEEecchhhHHHhhhcceecc---------CcCC-cEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHH
Q 010854          143 PKAIPWTQLSSIRCTAEGWAHID---------LKVG-DVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGK  211 (499)
Q Consensus       143 pk~v~~s~~~~~~~~~~~~~~~~---------~~~~-~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~  211 (499)
                      ||+|.++|+++...+......+.         +..+ ++++..+|++|.+++.. ++..+..|+.+++.....++..+++
T Consensus       222 PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  301 (562)
T PRK12492        222 AKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIK  301 (562)
T ss_pred             CceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHH
Confidence            99999999998766554433221         2333 56788999999999865 7777888988877765567789999


Q ss_pred             HHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC
Q 010854          212 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL  291 (499)
Q Consensus       212 ~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~  291 (499)
                      .++++++|++.++|+++..+.+.......+++++|.++++|+++++.+.+.+...+ ++++++.||+||++..+..+...
T Consensus       302 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~  380 (562)
T PRK12492        302 ELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYG  380 (562)
T ss_pred             HHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCc
Confidence            99999999999999999999887766667788999999999999999988887655 78999999999998766554443


Q ss_pred             CCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeE
Q 010854          292 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK  370 (499)
Q Consensus       292 ~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~  370 (499)
                      .....+++|.|+++++++|+|+++.+++.|+  .|||+| ++..+.+  ++.+++.+...+      +.++||+|||+|+
T Consensus       381 ~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~~------~~~g~~~TGD~g~  450 (562)
T PRK12492        381 ELARLGTVGIPVPGTALKVIDDDGNELPLGE--RGELCIKGPQVMKG--YWQQPEATAEAL------DAEGWFKTGDIAV  450 (562)
T ss_pred             ccccCCccceecCCCEEEEECCCCCCCCCCC--ceEEEEeCCccccc--cccCchhhhhcc------cCCCceecCcEEE
Confidence            3345578999999999999999999999998  599999 5443332  222333322222      2457999999999


Q ss_pred             eecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHH
Q 010854          371 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS  450 (499)
Q Consensus       371 ~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  450 (499)
                      ++++|++++.||.+|+++++|++|+|.+||+++. .||.|.++++++.++...+ +.++++++..+. ..+.+++.    
T Consensus       451 ~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~-~~~~~~i~----  523 (562)
T PRK12492        451 IDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARDP-GLSVEELK----  523 (562)
T ss_pred             ECCCCeEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHH----
Confidence            9999999999999999999999999999999997 8999999999999887777 888888876543 23444444    


Q ss_pred             HHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHH
Q 010854          451 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  488 (499)
Q Consensus       451 ~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~  488 (499)
                      +.+.++|+.|+.|.++.++++||+|++||++|++|++.
T Consensus       524 ~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        524 AYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             HHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            44667889999999999999999999999999999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-56  Score=458.15  Aligned_cols=459  Identities=19%  Similarity=0.232  Sum_probs=359.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.++++..+.      +.+.+..+..+.
T Consensus        61 ~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~  134 (542)
T PRK06018         61 IKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPS  134 (542)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999987532      222222222221


Q ss_pred             -ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH-HH-hh
Q 010854           82 -KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RC-TA  158 (499)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~-~~-~~  158 (499)
                       ..++.............+....+.++......     .........+++++++|||||||.||+|.++|+++. .. ..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~  209 (542)
T PRK06018        135 VERYVVLTDAAHMPQTTLKNAVAYEEWIAEADG-----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMA  209 (542)
T ss_pred             ccEEEEecccccccccCccccccHHHHhccCCc-----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHH
Confidence             11211111111111112234466666554321     112234566889999999999999999999998743 22 23


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      .....++++.+|+++...|++|.+++...+.++..|+++++.....+++.+++.++++++|++.++|+++..|.+.....
T Consensus       210 ~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~  289 (542)
T PRK06018        210 NNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE  289 (542)
T ss_pred             hhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc
Confidence            33445678899999999999999988777788899999988765667889999999999999999999999998876666


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC----------CccccccccCCCceE
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGL  308 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~  308 (499)
                      ..+++++|.++++|+++++++.+++++  .+..+++.||+||++.++..+.....          ....++|+|.+++++
T Consensus       290 ~~~~~~lr~~~~~G~~l~~~~~~~~~~--~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i  367 (542)
T PRK06018        290 GLKLPHLKMVVCGGSAMPRSMIKAFED--MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEM  367 (542)
T ss_pred             CCCcccceEEEEcCCCCCHHHHHHHHH--hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEE
Confidence            667889999999999999999999987  48899999999999876543321110          123578999999999


Q ss_pred             EEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcC-CCCCCCccccccCceeEeecCceEEEecccCCe
Q 010854          309 VILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG-MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT  386 (499)
Q Consensus       309 ~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~  386 (499)
                      +|+|+++++++.+....||+++ ++..+.+            |++. ....+.++||+|||+++++++|++++.||.+|+
T Consensus       368 ~v~d~~~~~~~~~~~~~Gel~i~g~~~~~g------------y~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~  435 (542)
T PRK06018        368 KITDDAGKELPWDGKTFGRLKVRGPAVAAA------------YYRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDV  435 (542)
T ss_pred             EEECCCCCCCCCCCCceeEEEEecCCcchh------------hhcCcccEecCCcEEEcCCEEEEcCCccEEEEecCCCe
Confidence            9999999988764222699999 5444332            1110 111245689999999999999999999999999


Q ss_pred             eeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEE
Q 010854          387 MNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV  466 (499)
Q Consensus       387 i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~  466 (499)
                      ++++|.+|+|.+||+++. .+|+|.+++|++.+++..+ +.+.++|++.++...+.+++.+.    +..+++.|+.|..+
T Consensus       436 i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~P~~i  509 (542)
T PRK06018        436 IKSGGEWISSIDLENLAV-GHPKVAEAAVIGVYHPKWD-ERPLLIVQLKPGETATREEILKY----MDGKIAKWWMPDDV  509 (542)
T ss_pred             EEECCEEECHHHHHHHHH-hCCcceeEEEEeccCCCcC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhCccccCCcEE
Confidence            999999999999999996 8999999999999998777 88888988887766565555555    55688999999999


Q ss_pred             EEcCCCCCCCCcHHHHHHHHHHHHh
Q 010854          467 KVVPEFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       467 ~~~~~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      +++++||+|++||++|++|++.|.+
T Consensus       510 ~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        510 AFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             EEeccCCCCCcchhhHHHHHHHHhc
Confidence            9999999999999999999999876

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.5e-57  Score=467.17  Aligned_cols=464  Identities=18%  Similarity=0.145  Sum_probs=345.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++.+|+++...      ..+.........
T Consensus        84 ~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~  157 (600)
T PRK08279         84 VGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLAR  157 (600)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcc
Confidence            67999999999999999999999999999999999999999999999999999999987532      122222222111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++.......     .....+.++.......+............+++++++|||||||.||+|+++|+++...+....
T Consensus       158 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~  232 (600)
T PRK08279        158 PPRLWVAGGDTL-----DDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFG  232 (600)
T ss_pred             cceEEEecCccc-----cccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHH
Confidence            111221111110     012334444432222111111222335678999999999999999999999999999988887


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++|+++..+|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++.++|++++.++........
T Consensus       233 ~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~  311 (600)
T PRK08279        233 GLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD  311 (600)
T ss_pred             HhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc
Confidence            7789999999999999999999886 666777788777765 56788899999999999999999999999887554444


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCC----CceE--------
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGL--------  308 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~----~~~~--------  308 (499)
                      ...+++.+  +|+.+++++.+.+...++...+++.||+||++..+...    ....+++|.+.+    +..+        
T Consensus       312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~  385 (600)
T PRK08279        312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTG  385 (600)
T ss_pred             cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc----CCCCcccccccccccccceeeeeccCcC
Confidence            45677764  47779999999998887656799999999988643321    123456666555    3322        


Q ss_pred             -EEECCCC--CCCCCCCCcceeeEe---cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecc
Q 010854          309 -VILDECG--VPYPDDQPCVGEVGL---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR  382 (499)
Q Consensus       309 -~i~d~~g--~~~~~g~~~~Gei~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR  382 (499)
                       .+.+.++  .+++.|+  .||+++   ++..+.+   +.++..+...+.......+++||+|||+|+++++|++++.||
T Consensus       386 ~~i~~~~~~~~~~~~g~--~Gel~~~i~~~~~~~G---Y~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR  460 (600)
T PRK08279        386 EPVRDADGRCIKVKPGE--VGLLIGRITDRGPFDG---YTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDR  460 (600)
T ss_pred             ceeeCCCCccccCCCCC--ceeEEEEecCcccccc---cCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecc
Confidence             2333222  3567777  599984   3444332   234444444333223345678999999999999999999999


Q ss_pred             cCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcee
Q 010854          383 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK  462 (499)
Q Consensus       383 ~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  462 (499)
                      .||+||++|++|+|.|||+++. .+|+|.+++|++++++..+....+++++..++...+.+++.++    ++++|+.|+.
T Consensus       461 ~~d~ik~~G~~i~p~eIE~~l~-~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~----l~~~L~~~~~  535 (600)
T PRK08279        461 LGDTFRWKGENVATTEVENALS-GFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAH----LYERLPAYAV  535 (600)
T ss_pred             cCCeEEECCcccCHHHHHHHHh-cCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHH----HHhhCccccC
Confidence            9999999999999999999997 8999999999999876533245566666654444555555555    5568999999


Q ss_pred             eeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          463 VSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       463 p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      |..++++++||+|.+||++|+.|++++.++-
T Consensus       536 P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  566 (600)
T PRK08279        536 PLFVRLVPELETTGTFKYRKVDLRKEGFDPS  566 (600)
T ss_pred             CeEEEeecCCCCCcchhhhHHHHhhcCCCcc
Confidence            9999999999999999999999999887763

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.4e-57  Score=503.57  Aligned_cols=467  Identities=18%  Similarity=0.171  Sum_probs=363.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+++++.+++++++++.+++++...+.........   .....
T Consensus       662 ~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~  738 (1146)
T PRK08633        662 LKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDL---ELPEN  738 (1146)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCch---hcccC
Confidence            579999999999999999999999999999999999999999999999999999999876432211000000   00011


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ..++...+... .   ......+.+....... +..  .........++|+++++|||||||.||+|.++|+++...+..
T Consensus       739 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~  813 (1146)
T PRK08633        739 VKVIYLEDLKA-K---ISKVDKLTALLAARLL-PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQ  813 (1146)
T ss_pred             ceEEEeehhcc-c---cchhHHHHHHHHhccC-CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHH
Confidence            11111111000 0   0011112222111100 000  000013456799999999999999999999999999988887


Q ss_pred             cceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ....++.+++|+++..+|++|.+++.. ++.+++.|+++++.+...+++.+++.++++++|++.++|++++.+.+.....
T Consensus       814 ~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  893 (1146)
T PRK08633        814 ISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH  893 (1146)
T ss_pred             HHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC
Confidence            777788899999999999999999876 8899999999999876678899999999999999999999999998876666


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC---------CCccccccccCCCceEE
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ---------PQAFGAFSTATMTAGLV  309 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~  309 (499)
                      +.+++++|.+++||+++++++.+.+++.+ +.++++.||+||++..........         ....+++|+|+|+++++
T Consensus       894 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~  972 (1146)
T PRK08633        894 PLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVR  972 (1146)
T ss_pred             cccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEE
Confidence            67789999999999999999999998776 789999999999986554332211         12457899999999999


Q ss_pred             EEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCee
Q 010854          310 ILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM  387 (499)
Q Consensus       310 i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i  387 (499)
                      |+| +++++++.|+  .||+++ ++..+.+  ++.+++.+...+.+   .++++||+|||++++|+||++++.||.||++
T Consensus       973 i~d~~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~~~~---~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i 1045 (1146)
T PRK08633        973 IVDPETFEELPPGE--DGLILIGGPQVMKG--YLGDPEKTAEVIKD---IDGIGWYVTGDKGHLDEDGFLTITDRYSRFA 1045 (1146)
T ss_pred             EEcCCCCccCCCCC--ceEEEEcCCCcccc--ccCCccchHHHhhc---CCCCCeEECCCEEEEcCCceEEEEecccchh
Confidence            999 6799999999  499999 5544433  33344444444432   2456899999999999999999999999999


Q ss_pred             eeCceeechHHHHHHHhhcCc--cceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeE
Q 010854          388 NLGGIKTSSVEIERVCDQADE--SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL  465 (499)
Q Consensus       388 ~~~G~~v~~~~iE~~l~~~~~--~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~  465 (499)
                      |++|++|+|.|||+++. +||  .+.+++|++++++..+ +.++++++..   ..+.+++.+++++   ..++.|+.|..
T Consensus      1046 ~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v~~~~~~~~g-~~~~~~v~~~---~~~~~~l~~~~~~---~~l~~~~~P~~ 1117 (1146)
T PRK08633       1046 KIGGEMVPLGAVEEELA-KALGGEEVVFAVTAVPDEKKG-EKLVVLHTCG---AEDVEELKRAIKE---SGLPNLWKPSR 1117 (1146)
T ss_pred             hhCcEEECHHHHHHHHH-hccCCCCceEEEEeccCCCCC-cEEEEEEecC---ccCHHHHHHHHHh---cCCCcccCCcE
Confidence            99999999999999997 888  4667999999998888 8888888762   2345555555432   46999999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          466 VKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       466 ~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +++++++|+|++||++|++|++.+++.
T Consensus      1118 i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1118 YFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             EEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            999999999999999999999886654

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5e-57  Score=461.50  Aligned_cols=435  Identities=18%  Similarity=0.137  Sum_probs=325.3

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCC--------CCHHHHHHHhhcCCeeEEEecccccccCccccchhh
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK   74 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~   74 (499)
                      ++||+|+++++|++++++++|||+++|++++ +++.        ...+++.+++++++++++|++.....      .+..
T Consensus        52 ~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~------~~~~  124 (525)
T PRK05851         52 DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLE------RLRA  124 (525)
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHH------HHHH
Confidence            6899999999999999999999999999865 4432        22355567789999999999874321      1100


Q ss_pred             hhhcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           75 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      .   .. . +.+.               .+........    ....  ....++++++++|||||||.||||+++|.++.
T Consensus       125 ~---~~-~-~~~~---------------~~~~~~~~~~----~~~~--~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~  178 (525)
T PRK05851        125 V---DS-S-VTVH---------------DLATAAHTNR----SASL--TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVL  178 (525)
T ss_pred             h---hc-c-cccc---------------cccccccccc----cccC--CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHH
Confidence            0   00 0 0000               0000000000    0000  12357899999999999999999999999999


Q ss_pred             HHhhhcceeccCc-CCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CC--ChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          155 RCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SP--LERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       155 ~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~--~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      ..+......+++. ++|+++.++|++|.+++..++.+++.|+++++.+. .+  ++..+++.++++++|++...|.++..
T Consensus       179 ~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~  258 (525)
T PRK05851        179 SNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNL  258 (525)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHH
Confidence            9888777778888 89999999999999999888899999999998763 12  46789999999999988665555555


Q ss_pred             HHccCC-CCcccccceeEEEeecCCCChhhHHHHHhhc-----ccCceeccccccceeeeeecCCCC-------------
Q 010854          231 WRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLSSKA-----WYNAIIESCGGTELSSAYIQGSLL-------------  291 (499)
Q Consensus       231 l~~~~~-~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~-----~~~~i~~~yg~tE~~~~~~~~~~~-------------  291 (499)
                      +.+... ....+++++|.++++|+++++++.+++...+     +...+++.||+||++..+......             
T Consensus       259 l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~  338 (525)
T PRK05851        259 IGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDG  338 (525)
T ss_pred             HHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccC
Confidence            443322 2345678999999999999999888877542     123599999999997655432211             


Q ss_pred             -CCCccccccccCCCceEEEECCCC-CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCce
Q 010854          292 -QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI  368 (499)
Q Consensus       292 -~~~~~~~~g~~~~~~~~~i~d~~g-~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  368 (499)
                       .....+++|+|+|+++++|+|+++ .+++.|+  .|||++ ++..+.+            |+++ +..+.++||+|||+
T Consensus       339 ~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~--~GEl~v~g~~~~~G------------Y~~~-~~~~~~~~~~TGDl  403 (525)
T PRK05851        339 SGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE--IGEIEIRGASMMSG------------YLGQ-APIDPDDWFPTGDL  403 (525)
T ss_pred             cccceeeeecCCCCCcEEEEECCCCCccCCCCC--eEEEEEecCchhhc------------cccC-CccCCCCceeccce
Confidence             112346899999999999999665 4688888  599999 5544432            3332 22334679999999


Q ss_pred             eEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHH
Q 010854          369 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI  448 (499)
Q Consensus       369 ~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  448 (499)
                      |+++ +|+|+++||.||+||++|++|+|.+||++|. .||+|.+++|++++++..+ +.+.++|+.... ..+.+++.++
T Consensus       404 ~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~  479 (525)
T PRK05851        404 GYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEFR-GPDEAGARSE  479 (525)
T ss_pred             EEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEec-CcchHHHHHH
Confidence            9997 7999999999999999999999999999996 8999999999999887776 666766665421 2345566677


Q ss_pred             HHHHHHhhcCCceeeeEEEEcC--CCCCCCCcHHHHHHHHHHHHh
Q 010854          449 FSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       449 ~~~~~~~~l~~~~~p~~~~~~~--~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      +++++...+  ++.|..+++++  +||+|++||++|+.|++.+++
T Consensus       480 ~~~~l~~~l--~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        480 VVQRVASEC--GVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             HHHHHHHHh--CCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            766665544  27889999998  899999999999999998865

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=4.4e-56  Score=455.93  Aligned_cols=460  Identities=18%  Similarity=0.206  Sum_probs=357.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++++.+.....++..+++.++++.+++++.... .........+....+.
T Consensus        70 ~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~  148 (536)
T PRK10946         70 IKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSS  148 (536)
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCC
Confidence            689999999999999999999999999998887777777888999999999999999764210 0000001111111222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++... .       .+...+.+++.....     ........++++++++|||||||.||+|+++|+++...+....
T Consensus       149 ~~~~~~~~-~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~  215 (536)
T PRK10946        149 LRVVLLLN-D-------DGEHSLDDAINHPAE-----DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV  215 (536)
T ss_pred             ceEEEEec-C-------CCCccHHHHhhCccc-----ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            22222111 1       123344454433221     1112334678999999999999999999999999999888877


Q ss_pred             eeccCcCCcEEEeecCccccchhh--hhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccC--CC
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CL  237 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~--~~  237 (499)
                      ..++++.+|++++.+|++|.+++.  .++.++..|+++++.+ ..++..+++.++++++|++.++|+++..|++..  ..
T Consensus       216 ~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~  294 (536)
T PRK10946        216 EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG  294 (536)
T ss_pred             HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC
Confidence            778899999999999999998875  3788899999998875 457788999999999999999999999998763  22


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGV  316 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~  316 (499)
                      ....+++++.++++|+.+++.+.+.+...+ ++++++.||+||+...+............++|.|+ |++.++|+|++|+
T Consensus       295 ~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~  373 (536)
T PRK10946        295 SRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGN  373 (536)
T ss_pred             ccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCC
Confidence            334568999999999999999999887666 78999999999976443322222233457899998 7999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  +||+++ ++..+.+  ++.+++.+...+      +.++||+|||+|++|++|++++.||.+|+++++|++|+
T Consensus       374 ~~~~g~--~Gel~v~g~~~~~G--Y~~~~~~t~~~~------~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~  443 (536)
T PRK10946        374 PLPQGE--VGRLMTRGPYTFRG--YYKSPQHNASAF------DANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIA  443 (536)
T ss_pred             CCCCCC--ccEEEEecCccchh--hcCCcccchhhc------ccCCceecCceEEECCCCcEEEeccccceeecCCEEEc
Confidence            999999  599999 5554433  222222222222      34679999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.+||++|. .+++|.++++++.++...+ +.+++++++.++  .+.+++.+.+++   ..++.|+.|..+.+++++|+|
T Consensus       444 ~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~a~vv~~~~--~~~~~l~~~~~~---~~l~~~~~P~~~~~~~~iP~t  516 (536)
T PRK10946        444 AEEIENLLL-RHPAVIHAALVSMEDELMG-EKSCAFLVVKEP--LKAVQLRRFLRE---QGIAEFKLPDRVECVDSLPLT  516 (536)
T ss_pred             HHHHHHHHH-hCCCcceEEEEcCCCcccC-ceEEEEEEeCCC--CCHHHHHHHHHh---CCccccccCcEEEEeccCCCC
Confidence            999999996 8999999999999988777 888999987754  455555555432   249999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhhhh
Q 010854          476 ASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~~~~  494 (499)
                      ++||++|++|++++++...
T Consensus       517 ~~GKv~r~~L~~~~~~~~~  535 (536)
T PRK10946        517 AVGKVDKKQLRQWLASRAS  535 (536)
T ss_pred             CCCcccHHHHHHHHHhhcc
Confidence            9999999999999877653

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-56  Score=451.46  Aligned_cols=425  Identities=21%  Similarity=0.200  Sum_probs=341.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      ++++|+|+++++|++++++++|||+++|++++|+++..+.+++..++++++++.++++....     ..       ..+.
T Consensus        42 L~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~-----~~-------~~~~  109 (471)
T PRK07787         42 VAGARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD-----PA-------GLPH  109 (471)
T ss_pred             hccCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc-----cc-------cccc
Confidence            46799999999999999999999999999999999999999999999999999999976310     00       0000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+..             ....+       .        ......++++++++|||||||.||+|.++|+++...+....
T Consensus       110 ~~~~~-------------~~~~~-------~--------~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~  161 (471)
T PRK07787        110 VPVRL-------------HARSW-------H--------RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALA  161 (471)
T ss_pred             eeeec-------------ccccc-------c--------cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHH
Confidence            00000             00000       0        00113568999999999999999999999999998887777


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++.+++++..+|++|.++++. ++.+++.|+++++.+ ..++..+++.++ +++|++.++|+++..|.+.... ..
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~  238 (471)
T PRK07787        162 EAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-AR  238 (471)
T ss_pred             HhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cc
Confidence            7788899999999999999999886 899999999999886 467889999999 9999999999999999875322 34


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      .++++|.+++||+++++++.+++...+ +..+++.||+||++...... .......+++|+|+++++++|+|+++.+++.
T Consensus       239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~  316 (471)
T PRK07787        239 ALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPH  316 (471)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCC
Confidence            578899999999999999999888766 67899999999998644333 2233456789999999999999988988873


Q ss_pred             -CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc-CCeeeeCceeechH
Q 010854          321 -DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSV  397 (499)
Q Consensus       321 -g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~-~d~i~~~G~~v~~~  397 (499)
                       ++ .+|||++ ++..+.+  ++.+++.+...+      ..++||+|||+|+++++|++++.||. +|+++++|.+|+|.
T Consensus       317 ~~~-~~Gei~v~g~~~~~g--y~~~~~~t~~~~------~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~  387 (471)
T PRK07787        317 DGE-TVGELQVRGPTLFDG--YLNRPDATAAAF------TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAG  387 (471)
T ss_pred             CCC-CceEEEEECcccchh--hcCChhhchhcc------cCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHH
Confidence             43 1599999 5443332  222333222222      23579999999999999999999996 89999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||++|. .++.|.+++|++.++...+ +.++++++...  ..+.+++.+    ++++.|++|+.|..++++++||+|.+
T Consensus       388 eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~--~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~~~~  459 (471)
T PRK07787        388 EIETALL-GHPGVREAAVVGVPDDDLG-QRIVAYVVGAD--DVAADELID----FVAQQLSVHKRPREVRFVDALPRNAM  459 (471)
T ss_pred             HHHHHHH-hCCCcceEEEEcccccccC-eEEEEEEEeCC--CCCHHHHHH----HHHhhcccccCCcEEEEeccCCCCCC
Confidence            9999997 8999999999999887777 89999998732  334444444    46678899999999999999999999


Q ss_pred             cHHHHHHHHHH
Q 010854          478 NKLLRRVLRDQ  488 (499)
Q Consensus       478 GKv~r~~l~~~  488 (499)
                      ||++|+.|+++
T Consensus       460 GKi~r~~L~~~  470 (471)
T PRK07787        460 GKVLKKQLLSE  470 (471)
T ss_pred             ccccHHHhccC
Confidence            99999999753

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-56  Score=456.01  Aligned_cols=453  Identities=18%  Similarity=0.168  Sum_probs=355.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++...     .............
T Consensus        59 v~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  133 (524)
T PRK06188         59 LGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPS  133 (524)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCC
Confidence            68999999999999999999999999999999999999999999999999999999987410     0111111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++......       .   ..++......  ...........++++++++|||||||.||+|.++|.++...+....
T Consensus       134 ~~~~~~~~~~~-------~---~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~  201 (524)
T PRK06188        134 LKHVLTLGPVP-------D---GVDLLAAAAK--FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQL  201 (524)
T ss_pred             ceEEEEeCCcc-------c---hhhHHHhhhc--cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHH
Confidence            11122111100       0   1111111110  0001111123356799999999999999999999999999888888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..+++..+++++..+|++|.+++. ++.+++.|+++++.+ ..++..+++.++++++|++.++|+++..+++.......+
T Consensus       202 ~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  279 (524)
T PRK06188        202 AEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD  279 (524)
T ss_pred             hhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC
Confidence            888899999999999999988864 677899999999987 467899999999999999999999999999887766778


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-----CCCccccccccCCCceEEEECCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ++++|.+++||+.++++....+.+.+ +..+++.||+||++..+......     ......++|+|+|++.++|+|++++
T Consensus       280 l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~  358 (524)
T PRK06188        280 LSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR  358 (524)
T ss_pred             CcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCC
Confidence            89999999999999999877777665 67799999999997555433221     1235578999999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  .||+++ ++..+.+  ++.++..+...+       .++||+|||+++++++|++++.||.+|+++++|.+|+
T Consensus       359 ~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~  427 (524)
T PRK06188        359 EVAQGE--VGEICVRGPLVMDG--YWNRPEETAEAF-------RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVF  427 (524)
T ss_pred             CCCCCC--eeEEEEECcchhhh--hcCChHHhhhhh-------cCCceeecceEEEcCCccEEEEeccccceecCCEEEC
Confidence            999998  499999 4433322  111222111111       2479999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.+||++|. .+++|.+++|++.+++..+ +.+++++++.++...+.+++.+    ++.+.++.++.|.+++++++||+|
T Consensus       428 ~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~~P~t  501 (524)
T PRK06188        428 PREVEDVLA-EHPAVAQVAVIGVPDEKWG-EAVTAVVVLRPGAAVDAAELQA----HVKERKGSVHAPKQVDFVDSLPLT  501 (524)
T ss_pred             HHHHHHHHH-hCCCeeEEEEEeccCCCcC-ceEEEEEEECCCCCCCHHHHHH----HHHHhcccCCCCcEEEEecCCCCC
Confidence            999999996 8999999999999888777 8899999988765555555554    456688999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHh
Q 010854          476 ASNKLLRRVLRDQIKH  491 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~~  491 (499)
                      ++||++|++|++.|.+
T Consensus       502 ~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        502 ALGKPDKKALRARYWE  517 (524)
T ss_pred             ccccccHHHHHHHHHh
Confidence            9999999999998844

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=4.4e-56  Score=454.92  Aligned_cols=452  Identities=18%  Similarity=0.221  Sum_probs=352.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC--
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--   79 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.+++++...      +.+.++....  
T Consensus        59 ~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~  132 (517)
T PRK08008         59 IRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDAT  132 (517)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccc
Confidence            68999999999999999999999999999999999999999999999999999999987532      2233332221  


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ....+..... ..   ....+..+++++......    .........++++++++|||||||.||+|+++|.++......
T Consensus       133 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  204 (517)
T PRK08008        133 PLRHICLTRV-AL---PADDGVSSFTQLKAQQPA----TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY  204 (517)
T ss_pred             cCcEEEEecC-CC---cccccccCHHHHhccCCc----cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH
Confidence            1112222111 11   112234555555443221    001122345689999999999999999999999999866544


Q ss_pred             cceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      ......++.++++++.+|++|..+... ++.++..|+++++.+ .+++..+++.++++++|++.++|++++.++......
T Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  283 (517)
T PRK08008        205 SAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA  283 (517)
T ss_pred             HhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc
Confidence            444446788999999999999877665 888999999999986 567889999999999999999999999998765444


Q ss_pred             cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCC
Q 010854          239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      ....+.++.+..++ .++++....+...+ +.++++.||+||++..+............++|.|+++++++|+|++++++
T Consensus       284 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~  361 (517)
T PRK08008        284 NDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPL  361 (517)
T ss_pred             ccccccceeeEEec-CCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCC
Confidence            34456778777654 67777777777655 78999999999998655544444444567899999999999999999999


Q ss_pred             CCCCCcceeeEecc----cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          319 PDDQPCVGEVGLFP----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       319 ~~g~~~~Gei~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      +.|+  .|||++..    ..+.+  ++.+++.+...+      +.++||+|||++++|++|++++.||.+|+||++|++|
T Consensus       362 ~~g~--~Gel~v~g~~~~~~~~g--y~~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i  431 (517)
T PRK08008        362 PAGE--IGEICIKGVPGKTIFKE--YYLDPKATAKVL------EADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENV  431 (517)
T ss_pred             CCCC--cceEEEeCCCCcchhhh--HhCChHHHhhcc------cCCCCeeccceEEECCCCcEEEeecccceEEeCCEEE
Confidence            9998  59999942    22221  222333322222      2457999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||+++. .+++|.+++|++.+++..+ +++.++|+++.+...+.+++.++    +.+++++|+.|..++++++||+
T Consensus       432 ~p~~iE~~l~-~~~~v~~~~v~g~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~P~~~~~v~~iP~  505 (517)
T PRK08008        432 SCVELENIIA-THPKIQDIVVVGIKDSIRD-EAIKAFVVLNEGETLSEEEFFAF----CEQNMAKFKVPSYLEIRKDLPR  505 (517)
T ss_pred             CHHHHHHHHH-hCCceeeEEEEccCCCCCC-ceEEEEEEECCCCCCCHHHHHHH----HHhhcccccCCcEEEEeccCCC
Confidence            9999999996 8999999999999988777 88999999887655555555555    5568899999999999999999


Q ss_pred             CCCcHHHHHHHH
Q 010854          475 TASNKLLRRVLR  486 (499)
Q Consensus       475 t~~GKv~r~~l~  486 (499)
                      |++||++|+.|+
T Consensus       506 t~~gK~~r~~l~  517 (517)
T PRK08008        506 NCSGKIIKKNLK  517 (517)
T ss_pred             CCccceehhhcC
Confidence            999999999874

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.1e-56  Score=505.79  Aligned_cols=444  Identities=21%  Similarity=0.242  Sum_probs=357.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++++++++++++|||+++|++++|++|..+.+.+.+++++++++.+|++........      .    ...
T Consensus       505 ~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~------~----~~~  574 (1296)
T PRK10252        505 VKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFA------D----VPD  574 (1296)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcc------c----CCC
Confidence            689999999999999999999999999999999999999999999999999999999875321110      0    000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      .. +.                .+.......      .........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus       575 ~~-~~----------------~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~  631 (1296)
T PRK10252        575 LT-SL----------------CYNAPLAPQ------GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQ  631 (1296)
T ss_pred             ce-ee----------------ecccccccc------cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHH
Confidence            00 00                000000000      00011123578999999999999999999999999999999888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|+++...|++|..++..++.+++.|+++++.+..  .++..+.+.++++++|++.++|+++..+++......
T Consensus       632 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~  711 (1296)
T PRK10252        632 NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG  711 (1296)
T ss_pred             HhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc
Confidence            889999999999999999999988899999999999998643  367889999999999999999999999887643322


Q ss_pred             --ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC------CCccccccccCCCceEEEE
Q 010854          240 --LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVIL  311 (499)
Q Consensus       240 --~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~------~~~~~~~g~~~~~~~~~i~  311 (499)
                        ..++++|.+++|||.+++++.+.+...+ ++++++.||+||++..++......      .....++|.|++++.++|+
T Consensus       712 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~  790 (1296)
T PRK10252        712 ARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRIL  790 (1296)
T ss_pred             ccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEE
Confidence              3467899999999999999998887654 788999999999986554332221      2234679999999999999


Q ss_pred             CCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          312 DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       312 d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                      |+.+++++.|+  .|||+| ++....+  ++.+++.+...|...+...+.+||+|||+|+++++|+++++||.||+||++
T Consensus       791 d~~~~~~~~g~--~Gel~i~g~~~~~G--Y~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~  866 (1296)
T PRK10252        791 DARMRPVPPGV--AGDLYLTGIQLAQG--YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIR  866 (1296)
T ss_pred             CCCCCCCCCCC--ceEEEecccccchh--hCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEe
Confidence            99999999999  599999 5554443  344555566666666666678899999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeC----CCCCC-ceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeE
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVS----PAGGG-PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL  465 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~----~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~  465 (499)
                      |++|+|.|||++|. .+|+|.+++|+...    +...+ ...++++++...+...+.+++++    ++.++|+.|+.|..
T Consensus       867 G~ri~~~eIE~~l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~----~l~~~Lp~~~~P~~  941 (1296)
T PRK10252        867 GQRIELGEIDRAMQ-ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQA----QLRERLPPHMVPVV  941 (1296)
T ss_pred             eEEecHHHHHHHHH-hCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHH----HHHhhCchhcCCcE
Confidence            99999999999997 89999999877552    11122 24799999987665445555554    46678999999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHHH
Q 010854          466 VKVVPEFPRTASNKLLRRVLRDQ  488 (499)
Q Consensus       466 ~~~~~~iP~t~~GKv~r~~l~~~  488 (499)
                      ++.+++||+|++||++|++|++.
T Consensus       942 ~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        942 LLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             EEEecCCCCCCCcChhHHhcCCC
Confidence            99999999999999999999753

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-55  Score=453.81  Aligned_cols=470  Identities=19%  Similarity=0.193  Sum_probs=354.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc-C-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-A-   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~-   79 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++.+|++++... ......+...... . 
T Consensus        57 ~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~  135 (540)
T PRK06164         57 VRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG-IDFAAILAAVPPDALP  135 (540)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc-ccHHHHhhcccccccC
Confidence            689999999999999999999999999999999999999999999999999999999875311 0011111111110 0 


Q ss_pred             CC-ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           80 PL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      .. ..+++........   ......+.++...... .............+++++++|||||||.||+|+++|+++...+.
T Consensus       136 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~  211 (540)
T PRK06164        136 PLRAIAVVDDAADATP---APAPGARVQLFALPDP-APPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHAR  211 (540)
T ss_pred             CcceEEEeccCcccCC---CCCccccccccccccc-CCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHH
Confidence            11 1122211111000   0001111111111100 00011112234568999999999999999999999999998888


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE  238 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  238 (499)
                      .....+++..++++++.+|++|.+++..++.++..|+++++.+ .+++..+++.|+++++|+++++|+++..|.+. ...
T Consensus       212 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~  289 (540)
T PRK06164        212 AIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDT-AGE  289 (540)
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcc
Confidence            8777788899999999999999999988999999999999886 56788999999999999999999999999887 234


Q ss_pred             cccccceeEEEeecC-CCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC--CCccccccccC-CCceEEEEC-C
Q 010854          239 GLDWTKIRSFASTGE-TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-E  313 (499)
Q Consensus       239 ~~~l~~l~~i~~~G~-~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~--~~~~~~~g~~~-~~~~~~i~d-~  313 (499)
                      ..++++++.+..+|. ....+...++...  ++.+++.||+||++..+.......  .......|.+. +++.++|+| +
T Consensus       290 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~  367 (540)
T PRK06164        290 RADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQ  367 (540)
T ss_pred             cCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCC
Confidence            556788988877663 4444555565544  788999999999987655443322  12234567775 899999999 7


Q ss_pred             CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      ++.+++.|+  .|||+| ++..+.+  ++.+++.+...+      ..++||+|||+|+++++|++++.||.+|+++++|.
T Consensus       368 ~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~~------~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~  437 (540)
T PRK06164        368 DGALLPDGE--SGEIEIRAPSLMRG--YLDNPDATARAL------TDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGF  437 (540)
T ss_pred             CCcCCCCCC--eeEEEEeccccccc--ccCCchhhhhcc------cCCCceecCCeEEEcCCceEEEEeecCCeEEECCE
Confidence            889999998  599999 6555543  223333332222      34679999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCC
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF  472 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~i  472 (499)
                      +|+|.+||+++. .+++|.+++|++++. ..+ +.+++++++.++...+.+++.++    +.+.|++|+.|..+++++++
T Consensus       438 ~i~p~eIE~~l~-~~~~v~~~~v~~~~~-~~~-~~~~~~vv~~~~~~~~~~~l~~~----~~~~l~~~~~P~~i~~~~~~  510 (540)
T PRK06164        438 LVNPAEIEHALE-ALPGVAAAQVVGATR-DGK-TVPVAFVIPTDGASPDEAGLMAA----CREALAGFKVPARVQVVEAF  510 (540)
T ss_pred             EcCHHHHHHHHH-hCCCceeEEEEecCC-CCc-eeEEEEEEeCCCCCCCHHHHHHH----HHhhcccCcCCcEEEEecCC
Confidence            999999999996 899999999999883 334 78899999877655566555555    55688899999999999999


Q ss_pred             CCCCCc---HHHHHHHHHHHHhhhhhcc
Q 010854          473 PRTASN---KLLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       473 P~t~~G---Kv~r~~l~~~~~~~~~~~~  497 (499)
                      |+|++|   |++|++|++++++.+.++.
T Consensus       511 P~t~~g~~~Ki~r~~L~~~~~~~~~~~~  538 (540)
T PRK06164        511 PVTESANGAKIQKHRLREMAQARLAAER  538 (540)
T ss_pred             CCCCCCccccccHHHHHHHHHHhhhhhc
Confidence            999999   9999999999998887764

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.4e-56  Score=451.97  Aligned_cols=443  Identities=20%  Similarity=0.195  Sum_probs=345.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++|++|+++++|+++++++++||+++|++++|+++..+++++.+++++++++.+|+++....      .+..+.    .
T Consensus        51 ~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~----~  120 (529)
T PRK07867         51 PTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAE------LLDGLD----P  120 (529)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHH------HHHhhc----c
Confidence            468999999999999999999999999999999999999999999999999999999875421      111111    1


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++...           ...+.+++.....    .........++++++++|||||||.||+|+++|+++...+....
T Consensus       121 ~~~~~~~~-----------~~~~~~~l~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~  185 (529)
T PRK07867        121 GVRVINVD-----------SPAWADELAAHRD----AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA  185 (529)
T ss_pred             CceEEEec-----------cccHHHHhcccCC----CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHH
Confidence            11122111           1124444432211    11122335679999999999999999999999999988888877


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++.+|+++..+|++|.+++.. ++.++..|+++++.+ .++++.+++.++++++|++.++|+.+..++........
T Consensus       186 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~  264 (529)
T PRK07867        186 QRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD  264 (529)
T ss_pred             HhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc
Confidence            7788999999999999999999876 777889999988875 56788999999999999999999999988876543333


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYP  319 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~  319 (499)
                      ..+++|. +.||+.+++.. ..+.+.+ ++++++.||+||++......+   ....+++|.|+++  ++++| +++.+++
T Consensus       265 ~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~---~~~~~~~g~~~~~--~~i~~~~~~~~~~  336 (529)
T PRK07867        265 ADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP---DTPPGALGPLPPG--VAIVDPDTGTECP  336 (529)
T ss_pred             cccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC---CCCCCCcCCCCCC--EEEEECCCCCCCC
Confidence            3457774 55788776654 4555555 788999999999886543222   2234678999998  67777 6788888


Q ss_pred             CCC----------CcceeeEe-c-ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCee
Q 010854          320 DDQ----------PCVGEVGL-F-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM  387 (499)
Q Consensus       320 ~g~----------~~~Gei~v-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i  387 (499)
                      .|+          ..+||+++ . +..+.+  ++.+++.+...+       .++||+|||+++++++|++++.||.||++
T Consensus       337 ~g~~~~~~~~~~~~~~Gel~i~~g~~~~~g--y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i  407 (529)
T PRK07867        337 PAEDADGRLLNADEAIGELVNTAGPGGFEG--YYNDPEADAERM-------RGGVYWSGDLAYRDADGYAYFAGRLGDWM  407 (529)
T ss_pred             CCccccccccccCCcceEEEEecCCccccc--ccCChHhhhhhh-------cCCeEeeccEEEEeCCCcEEEeccccCeE
Confidence            776          01399987 3 333322  222222222222       24799999999999999999999999999


Q ss_pred             eeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEE
Q 010854          388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK  467 (499)
Q Consensus       388 ~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~  467 (499)
                      +++|++|+|.+||++|. .+|+|.+++|++.+++..+ ++++++++..++...+.+++.+.+++  ...|+.|+.|..++
T Consensus       408 ~~~G~~v~p~eIE~~l~-~~p~V~~~~V~g~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~--~~~l~~~~~P~~i~  483 (529)
T PRK07867        408 RVDGENLGTAPIERILL-RYPDATEVAVYAVPDPVVG-DQVMAALVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVR  483 (529)
T ss_pred             EECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCCCCC-eeEEEEEEECCCCCCCHHHHHHHHHh--hccCCcccCCeEEE
Confidence            99999999999999997 8999999999999998888 89999999887766777777777653  23599999999999


Q ss_pred             EcCCCCCCCCcHHHHHHHHHHHHh
Q 010854          468 VVPEFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       468 ~~~~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++++||+|++||++|+.|++++..
T Consensus       484 ~~~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        484 VCAELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             EeeccCCCCCcceeHHHHHHhcCC
Confidence            999999999999999999987754

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.6e-56  Score=451.18  Aligned_cols=432  Identities=22%  Similarity=0.232  Sum_probs=348.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..++++++++.+|+++....      .....      
T Consensus        49 ~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~------~~~~~------  116 (483)
T PRK03640         49 VKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEA------KLIPG------  116 (483)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhH------HHhhh------
Confidence            578999999999999999999999999999999999999999999999999999999874321      00000      


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                        ....+.++......    ..........+++++++|||||||.||+|.++|.++...+....
T Consensus       117 ------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~  174 (483)
T PRK03640        117 ------------------ISVKFAELMNGPKE----EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA  174 (483)
T ss_pred             ------------------ccccHHHHhhcccc----cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHH
Confidence                              00123443332211    11122234578999999999999999999999999888776666


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++++|+++..+|++|.+++..++.++..|+++++.+ ..++..+++.++++++|++.++|+++..|.+..... ..
T Consensus       175 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~  252 (483)
T PRK03640        175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TY  252 (483)
T ss_pred             HhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-cc
Confidence            6678999999999999999999888899999999999887 467899999999999999999999999998764332 23


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC-CCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      ..++|.++++|+.+++.+.+.++..  ++++++.||+||++..+..... ......+++|.|++++++++.|+ +++++.
T Consensus       253 ~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~  329 (483)
T PRK03640        253 PSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVVVPP  329 (483)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecC-CCcCCC
Confidence            4689999999999999988877653  7889999999998754433322 23445689999999999999986 478999


Q ss_pred             CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854          321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI  399 (499)
Q Consensus       321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i  399 (499)
                      |+.  ||++| ++..+.+  +..+++.+...+       .++||+|||+++++++|++++.||.+|++|.+|.+|+|.+|
T Consensus       330 g~~--Gel~v~g~~~~~g--y~~~~~~~~~~~-------~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~i  398 (483)
T PRK03640        330 FEE--GEIVVKGPNVTKG--YLNREDATRETF-------QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEI  398 (483)
T ss_pred             CCc--eEEEEECcchhhh--hcCCHHHHHHHH-------hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHH
Confidence            984  99999 5544432  112222222222       24699999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      |+.+. .+++|.++++++.+++..+ +.++++++...  ..+.+++.++    +++.|+.|+.|..+++++++|+|++||
T Consensus       399 e~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~----~~~~l~~~~~p~~i~~~~~iP~t~~gK  470 (483)
T PRK03640        399 EEVLL-SHPGVAEAGVVGVPDDKWG-QVPVAFVVKSG--EVTEEELRHF----CEEKLAKYKVPKRFYFVEELPRNASGK  470 (483)
T ss_pred             HHHHH-hCCCeeEEEEEeCCCcccC-CceEEEEEeCC--CCCHHHHHHH----HHHhccCCCCCcEEEEeCCCCCCCccc
Confidence            99996 8999999999999887776 77888787543  3455555544    567899999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 010854          480 LLRRVLRDQIKH  491 (499)
Q Consensus       480 v~r~~l~~~~~~  491 (499)
                      ++|++|++.+++
T Consensus       471 ~~r~~l~~~~~~  482 (483)
T PRK03640        471 LLRHELKQLVEE  482 (483)
T ss_pred             eeHHHHHHHHhh
Confidence            999999998874

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.3e-57  Score=548.95  Aligned_cols=443  Identities=21%  Similarity=0.206  Sum_probs=364.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.........         ....
T Consensus       558 v~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~---------~~~~  628 (5163)
T PRK12316        558 VGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL---------AAGV  628 (5163)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc---------ccCc
Confidence            6899999999999999999999999999999999999999999999999999999998753211000         0000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+..               ........     ..........++++|+++|||||||.||||+++|+++.+.+.+..
T Consensus       629 ~~~~~~~---------------~~~~~~~~-----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~  688 (5163)
T PRK12316        629 QVLDLDR---------------PAAWLEGY-----SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ  688 (5163)
T ss_pred             eEEEecC---------------cchhhccC-----CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHH
Confidence            1111100               00000100     011112234678999999999999999999999999999999888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC--CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|+++...|++|..++..++.+++.|+++++.+.  ..+++.+++.++++++|++.++|++++.|++...  .
T Consensus       689 ~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~  766 (5163)
T PRK12316        689 QAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--V  766 (5163)
T ss_pred             HhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--c
Confidence            88999999999999999999999899999999999999864  3467899999999999999999999999987543  2


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC-CCCCCccccccccCCCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      .+++++|.+++|||++++++.+.+...++++++++.||+||++..+.... ........++|+|+++++++|+|++++++
T Consensus       767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~  846 (5163)
T PRK12316        767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV  846 (5163)
T ss_pred             ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCC
Confidence            35789999999999999999998887777889999999999985433222 12233456899999999999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  +|||+| ++..+.+  ++.+++.+...|...+...+++||+|||+|++++||+|+++||.||+||++|++|+|.
T Consensus       847 p~G~--~GEl~i~G~~v~~G--Yl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~  922 (5163)
T PRK12316        847 PVGV--LGELYLAGRGLARG--YHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELG  922 (5163)
T ss_pred             CCCC--ceEEEecccccChh--hCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChH
Confidence            9999  599999 6655543  4456666666676666667889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      |||++|. .||+|.+++|++.+    + +.++++|++.++.....++++    +++.++|+.|+.|..++++++||+|++
T Consensus       923 EIE~~l~-~~p~V~~a~V~~~~----~-~~lva~vv~~~~~~~~~~~l~----~~l~~~Lp~y~vP~~i~~v~~lP~t~~  992 (5163)
T PRK12316        923 EIEARLL-EHPWVREAAVLAVD----G-KQLVGYVVLESEGGDWREALK----AHLAASLPEYMVPAQWLALERLPLTPN  992 (5163)
T ss_pred             HHHHHHH-hCCCcceEEEEEcC----C-CeEEEEEEccCCCCCCHHHHH----HHHHhhCCCccCCCeEEEHhhCCCCCC
Confidence            9999996 89999999999886    4 889999998775544544444    446678999999999999999999999


Q ss_pred             cHHHHHHHHHHH
Q 010854          478 NKLLRRVLRDQI  489 (499)
Q Consensus       478 GKv~r~~l~~~~  489 (499)
                      ||++|++|++..
T Consensus       993 GKidr~~L~~~~ 1004 (5163)
T PRK12316        993 GKLDRKALPAPE 1004 (5163)
T ss_pred             CChhHHhhcCcc
Confidence            999999998654

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=8e-56  Score=457.14  Aligned_cols=460  Identities=20%  Similarity=0.251  Sum_probs=352.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+|+++....      .+.......+.
T Consensus        73 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~  146 (560)
T PRK08751         73 LKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGT------TVQQVIADTPV  146 (560)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHH------HHHHHhhCCCc
Confidence            689999999999999999999999999999999999999999999999999999999875321      11111111111


Q ss_pred             ceEEecccCC-------------------CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 010854           82 KAIVLPAIGN-------------------DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE  142 (499)
Q Consensus        82 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  142 (499)
                      ..++......                   .......+....+.+.......    ..........+++++++|||||||.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~  222 (560)
T PRK08751        147 KQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGV  222 (560)
T ss_pred             cEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCC
Confidence            1111100000                   0000001122344444433221    1112233567899999999999999


Q ss_pred             CceEEecchhhHHHhhhcceecc----CcCC-cEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHh
Q 010854          143 PKAIPWTQLSSIRCTAEGWAHID----LKVG-DVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDA  216 (499)
Q Consensus       143 pk~v~~s~~~~~~~~~~~~~~~~----~~~~-~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~  216 (499)
                      ||+|.++|.++...+......+.    +..+ +.++...|++|.+++.. .+.++..|++.++.....++..+++.++++
T Consensus       223 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~  302 (560)
T PRK08751        223 AKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKT  302 (560)
T ss_pred             CCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhc
Confidence            99999999999877665544332    3344 56778899999998765 666777888887776566788999999999


Q ss_pred             CCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcc
Q 010854          217 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF  296 (499)
Q Consensus       217 ~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~  296 (499)
                      ++|++.++|+++..+.+.....+.+++++|.+++||+++++.+...+...+ +..+++.||+||++..+..+........
T Consensus       303 ~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~  381 (560)
T PRK08751        303 RFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYN  381 (560)
T ss_pred             ceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccC
Confidence            999999999999999987666667788999999999999999988887655 7889999999999876654443333456


Q ss_pred             ccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCc
Q 010854          297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG  375 (499)
Q Consensus       297 ~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G  375 (499)
                      +++|.|++++.++++|+++.+++.|+  .||+++ ++..+.+  ++.+++.+...+      ++++||+|||+|+++++|
T Consensus       382 ~~vG~~~~~~~v~i~d~~~~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~------~~~g~~~TGD~~~~~~~g  451 (560)
T PRK08751        382 GSIGLPIPSTDACIKDDAGTVLAIGE--IGELCIKGPQVMKG--YWKRPEETAKVM------DADGWLHTGDIARMDEQG  451 (560)
T ss_pred             CCcCccCCCceEEEECCCCCCCCCCC--ceEEEEecCccchh--hcCChhhhhhcc------ccCCCccccceEEEcCCc
Confidence            78999999999999999999999998  599999 5443322  222333333233      345799999999999999


Q ss_pred             eEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh
Q 010854          376 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS  455 (499)
Q Consensus       376 ~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~  455 (499)
                      ++++.||.+|+++++|.+|+|.+||+++. .+++|.+++|+++++...+ +.+.++++... ...+.+++.++    +.+
T Consensus       452 ~l~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~~-~~~~~~~l~~~----~~~  524 (560)
T PRK08751        452 FVYIVDRKKDMILVSGFNVYPNEIEDVIA-MMPGVLEVAAVGVPDEKSG-EIVKVVIVKKD-PALTAEDVKAH----ARA  524 (560)
T ss_pred             eEEEEeechhheeECCEEEcHHHHHHHHH-hCcCeeeeEEEecCCCCCC-ceEEEEEEcCC-CCCCHHHHHHH----HHH
Confidence            99999999999999999999999999996 8999999999999988777 77787777543 33344444444    556


Q ss_pred             hcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHH
Q 010854          456 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  489 (499)
Q Consensus       456 ~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~  489 (499)
                      +++.|+.|..++++++||+|++||++|++|++..
T Consensus       525 ~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        525 NLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             hhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence            8899999999999999999999999999998763

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-56  Score=454.80  Aligned_cols=429  Identities=18%  Similarity=0.165  Sum_probs=338.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+++++.+.+.      +    .....
T Consensus        82 i~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~------~----~~~~~  151 (516)
T PRK13383         82 VAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAER------I----AGADD  151 (516)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHH------H----Hhhhc
Confidence            6799999999999999999999999999999999999999999999999999999998754211      1    11111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH--HHhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI--RCTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~--~~~~~  159 (499)
                      ....+..  .         .   ..  .....      .  .....++.++++|||||||.||+|+++|....  .....
T Consensus       152 ~~~~~~~--~---------~---~~--~~~~~------~--~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~  207 (516)
T PRK13383        152 AVAVIDP--A---------T---AG--AEESG------G--RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVT  207 (516)
T ss_pred             ceEEecc--c---------h---hh--hhcCC------C--CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHh
Confidence            1111110  0         0   00  00000      0  01123566789999999999999999987322  11222


Q ss_pred             cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC--
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--  237 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--  237 (499)
                      ....++++++|+++..+|++|.+++..++.++..|++++..+ .++++.+++.++++++|.+.++|+++..+.+....  
T Consensus       208 ~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  286 (516)
T PRK13383        208 ILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR  286 (516)
T ss_pred             HHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc
Confidence            233457889999999999999999988888899999998875 56788999999999999999999999999876432  


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      ...+++++|.++++|+++++++.+++.+.+ +..+++.||+||++..+...........+++|+|+|+++++|+|+++++
T Consensus       287 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  365 (516)
T PRK13383        287 ARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRP  365 (516)
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHHc-CchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCC
Confidence            233568999999999999999999998776 6789999999999865544433333456789999999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      ++.|+  .|||++ ++..+.+            |+........++||+|||++++|++|++++.||.+|++|++|.+|+|
T Consensus       366 ~~~g~--~Gel~v~g~~~~~~------------Y~~~~~~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~  431 (516)
T PRK13383        366 VGPRV--TGRIFVGGELAGTR------------YTDGGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYP  431 (516)
T ss_pred             CCCCC--ceEEEEecCccccc------------ccCCchhheecCceecceeEEEcCCccEEEeccccceEEECCEEECH
Confidence            99998  599999 4433332            11111111235799999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. .+|+|.+++++++++...+ +.+.++|+..++...+.+++.++    +.++++.|+.|..++++++||+|+
T Consensus       432 ~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~~~~~p~~i~~v~~iP~t~  505 (516)
T PRK13383        432 RAVENALA-AHPAVADNAVIGVPDERFG-HRLAAFVVLHPGSGVDAAQLRDY----LKDRVSRFEQPRDINIVSSIPRNP  505 (516)
T ss_pred             HHHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEEEECCCCCCCHHHHHHH----HHHhcccCCCCcEEEEeCCCCCCC
Confidence            99999996 8999999999999988777 88999999876655455554444    556788999999999999999999


Q ss_pred             CcHHHHHHHH
Q 010854          477 SNKLLRRVLR  486 (499)
Q Consensus       477 ~GKv~r~~l~  486 (499)
                      +||++|+.|+
T Consensus       506 ~gKi~r~~L~  515 (516)
T PRK13383        506 TGKVLRKELP  515 (516)
T ss_pred             CCcCcHHHhC
Confidence            9999999874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.2e-55  Score=450.57  Aligned_cols=447  Identities=18%  Similarity=0.177  Sum_probs=359.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+.++++++|||+++|++++|+++..+.+++.++++..+++.++++.....      .       ...
T Consensus        49 ~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~  115 (503)
T PRK04813         49 LPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL------E-------ILG  115 (503)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc------c-------ccC
Confidence            578999999999999999999999999999999999999999999999999999999874210      0       000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                       .....++++......  ...........++++++++|||||||.||+|.++|+++...+.+..
T Consensus       116 -----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~  176 (503)
T PRK04813        116 -----------------IPVITLDELKDIFAT--GNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWML  176 (503)
T ss_pred             -----------------CcEEehHHhhhhhhc--cccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHH
Confidence                             001111121111100  0011112234678899999999999999999999999998887777


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+.+..+++++...|++|..++..++.++..|+++++.+..  .++..+++.++++++|.+..+|++++.+........
T Consensus       177 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~  256 (503)
T PRK04813        177 EDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNE  256 (503)
T ss_pred             HHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCc
Confidence            778889999999999999999988888999999999988753  357889999999999999999999988776655455


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      .++++++.++++|+++++.+.+++.+.+++..+++.||+||++..+......    ......++|++.++++++|+|++|
T Consensus       257 ~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~  336 (503)
T PRK04813        257 EHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEG  336 (503)
T ss_pred             ccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCC
Confidence            6688999999999999999999999988788899999999987654432211    123445799999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      .+++.|+  .||+++ ++..+.+  ++.++..+...|.   ...+.+||+|||++++ ++|++++.||.+|+++++|++|
T Consensus       337 ~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~~---~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v  408 (503)
T PRK04813        337 TKLPDGE--QGEIVISGPSVSKG--YLNNPEKTAEAFF---TFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRI  408 (503)
T ss_pred             CCCCCCC--ceEEEEeccccccc--cCCChhHhHHhhc---cCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEe
Confidence            9999998  599999 4433322  1222222222221   1145679999999999 9999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||+++. .+|+|.++++++.++...+ +.+++++++.++......++.+.+++++.++++.|+.|.+++++++||+
T Consensus       409 ~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~  486 (503)
T PRK04813        409 ELEEIEQNLR-QSSYVESAVVVPYNKDHKV-QYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPL  486 (503)
T ss_pred             CHHHHHHHHH-hCCCcceEEEEEeeCCCCc-cEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCC
Confidence            9999999996 8999999999997776555 8888998877653333446777888889899999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q 010854          475 TASNKLLRRVLRDQIK  490 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~  490 (499)
                      |++||++|++|++.++
T Consensus       487 t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        487 TPNGKIDRKALIEEVN  502 (503)
T ss_pred             CCCCCCcHHHHHHHhc
Confidence            9999999999998875

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-55  Score=446.09  Aligned_cols=456  Identities=20%  Similarity=0.205  Sum_probs=353.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++......         +......
T Consensus        33 ~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~---------~~~~~~~  103 (509)
T PRK12406         33 VRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHADLLHG---------LASALPA  103 (509)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEccchhhh---------hhhhhhc
Confidence            6899999999999999999999999999999999999999999999999999999998754321         1111100


Q ss_pred             ceEEecccCC---------CCC-CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecch
Q 010854           82 KAIVLPAIGN---------DVG-IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL  151 (499)
Q Consensus        82 ~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~  151 (499)
                      ...++.....         ... .........++++......        ......+++++++|||||||.||+|.++|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~  175 (509)
T PRK12406        104 GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP--------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAP  175 (509)
T ss_pred             ccceeecccccccccccccccccccCCCCccCHHHHhcccCc--------cCCCCCCCceEEEECCCCCCCCceEEEech
Confidence            0111000000         000 0112234455554432111        112346899999999999999999998765


Q ss_pred             hh---HHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHH
Q 010854          152 SS---IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV  228 (499)
Q Consensus       152 ~~---~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l  228 (499)
                      ..   ..........+++.++++++..+|++|..+....+.++..|+++++.+ ..+++.+++.++++++|.+.++|+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~  254 (509)
T PRK12406        176 TPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMF  254 (509)
T ss_pred             hHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHH
Confidence            43   333333445677899999999999999988777666788999998876 46789999999999999999999999


Q ss_pred             HHHHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCc
Q 010854          229 KAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA  306 (499)
Q Consensus       229 ~~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~  306 (499)
                      ..|++...  ....++++++.++.+|+++++++..++.+.+ +..+++.||+||++.+............+++|.|++++
T Consensus       255 ~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~  333 (509)
T PRK12406        255 IRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGA  333 (509)
T ss_pred             HHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCcccccccCCCcCccCCCc
Confidence            99987543  2345678999999999999999999988765 67899999999999766544333334557899999999


Q ss_pred             eEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCC
Q 010854          307 GLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD  385 (499)
Q Consensus       307 ~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d  385 (499)
                      .++++|+++++++.|+  .||+++ ++..... .+..+++.+..       ...++||+|||+++++++|++++.||.+|
T Consensus       334 ~~~i~d~~~~~~~~g~--~Gel~v~~~~~~~~-~y~~~~~~~~~-------~~~~~~~~TGD~~~~~~~g~~~~~GR~~d  403 (509)
T PRK12406        334 ELRFVDEDGRPLPQGE--IGEIYSRIAGNPDF-TYHNKPEKRAE-------IDRGGFITSGDVGYLDADGYLFLCDRKRD  403 (509)
T ss_pred             EEEEECCCCCCCCCCC--ceEEEEECCccccc-cccCCchhccc-------ccCCCCeEEccEEEEcCCceEEEeecccc
Confidence            9999999999999998  599999 4433221 12112221111       12467999999999999999999999999


Q ss_pred             eeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeE
Q 010854          386 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL  465 (499)
Q Consensus       386 ~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~  465 (499)
                      ++|++|.+|+|.+||++|. .+++|.++++++.++...+ +.+++++++.++...+.+++.+.    +.+.+++|+.|..
T Consensus       404 ~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----l~~~l~~~~~P~~  477 (509)
T PRK12406        404 MVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EALMAVVEPQPGATLDEADIRAQ----LKARLAGYKVPKH  477 (509)
T ss_pred             eEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-ceeEEEEEECCCCCCCHHHHHHH----HHHhcccCCCCcE
Confidence            9999999999999999996 8999999999999887767 78888998876554455555554    5568889999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          466 VKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       466 ~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +++++++|+|++||++|++|++.+...
T Consensus       478 i~~~~~iP~t~~GK~~r~~L~~~~~~~  504 (509)
T PRK12406        478 IEIMAELPREDSGKIFKRRLRDPYWAN  504 (509)
T ss_pred             EEEeccCCCCCccchhHHHHHHHHHhh
Confidence            999999999999999999999877653

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.5e-56  Score=462.52  Aligned_cols=466  Identities=18%  Similarity=0.164  Sum_probs=340.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|+++....     ..+.......+.
T Consensus        98 v~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~  172 (660)
T PLN02430         98 AEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK-----ELLEPDCKSAKR  172 (660)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH-----HHHhhhcccCCC
Confidence            689999999999999999999999999999999999999999999999999999999864210     011111111111


Q ss_pred             ceEEecccCCCCC-----CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           82 KAIVLPAIGNDVG-----IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        82 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      ...++........     ........+|+++...+...+    .......++|+++++|||||||.||||++||+++...
T Consensus       173 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~  248 (660)
T PLN02430        173 LKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENP----SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATF  248 (660)
T ss_pred             ceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCC----CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHH
Confidence            2222221111000     000112346777765443211    1122345799999999999999999999999999887


Q ss_pred             hhhcce---e--ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          157 TAEGWA---H--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       157 ~~~~~~---~--~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      +.....   .  ..++++|++++++|++|.++....+.++..|+++++...  ++..+.+.+++.+||++.++|.+++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l  326 (660)
T PLN02430        249 VRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERI  326 (660)
T ss_pred             HHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHH
Confidence            655422   1  246789999999999999998776667889999988753  467899999999999999999999877


Q ss_pred             HccCC-------------------------------C--Cc-cc----------c-cceeEEEeecCCCChhhHHHHHhh
Q 010854          232 RNTNC-------------------------------L--EG-LD----------W-TKIRSFASTGETSNVDDDLWLSSK  266 (499)
Q Consensus       232 ~~~~~-------------------------------~--~~-~~----------l-~~l~~i~~~G~~l~~~~~~~~~~~  266 (499)
                      .+...                               .  .. .+          + +++|.+++||+++++++.++++ .
T Consensus       327 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~  405 (660)
T PLN02430        327 HEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-V  405 (660)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-H
Confidence            64210                               0  00 00          1 5899999999999999876665 4


Q ss_pred             cccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC--CCC-CCCCCCCCcceeeEe-cccccccccccc
Q 010854          267 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-FPLYLGASDRLL  342 (499)
Q Consensus       267 ~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d--~~g-~~~~~g~~~~Gei~v-~~~~~~~~~~~~  342 (499)
                      +.++.+++.||+||+++.............+++|.|.+++++++.|  +.| .+++.+.  .|||+| ++..+.+  ++.
T Consensus       406 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~--~GEi~vrg~~v~~G--Y~~  481 (660)
T PLN02430        406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPP--RGEICVRGKCLFSG--YYK  481 (660)
T ss_pred             hcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCC--cceEEecCCCcccc--ccC
Confidence            4356799999999998765544433334568999999999999986  333 3444444  499999 6655543  333


Q ss_pred             cccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEeCCC
Q 010854          343 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPA  421 (499)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~  421 (499)
                      +++.+...+       .++||+|||+|++|++|+|++.||.||+||. +|++|+|.+||+++. .||.|.+++|++..  
T Consensus       482 ~~e~t~~~~-------~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~-~~p~V~~~~V~G~~--  551 (660)
T PLN02430        482 NPELTEEVM-------KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYG-QNPIVEDIWVYGDS--  551 (660)
T ss_pred             ChHHhhhhh-------hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHh-cCCCeeEEEEEecC--
Confidence            444433333       2689999999999999999999999999995 799999999999996 99999999999832  


Q ss_pred             CCCceEEEEEEEecCCC----------CC------CHHHHHH----HHHHHH-HhhcCCceeeeEEEEcCC-C-----CC
Q 010854          422 GGGPEVLVIFVVLKKGF----------TS------QPDKLKM----IFSKAI-QSKLNPLFKVSLVKVVPE-F-----PR  474 (499)
Q Consensus       422 ~~~~~~~~~~v~~~~~~----------~~------~~~~l~~----~~~~~~-~~~l~~~~~p~~~~~~~~-i-----P~  474 (499)
                       .+ +.++|+|++....          ..      +..++++    .+.+.. +++|+.|.++++|++.++ +     .+
T Consensus       552 -~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~l  629 (660)
T PLN02430        552 -FK-SMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLV  629 (660)
T ss_pred             -Cc-ceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcC
Confidence             23 7889999876421          00      1122333    333322 346999999999998763 3     37


Q ss_pred             CCCcHHHHHHHHHHHHhhhhh
Q 010854          475 TASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      |+++|+.|+.+.+.|++++++
T Consensus       630 T~t~K~~R~~i~~~y~~~i~~  650 (660)
T PLN02430        630 TATLKKRRNNLLKYYQVEIDE  650 (660)
T ss_pred             ChhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999998865

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.4e-55  Score=449.98  Aligned_cols=453  Identities=22%  Similarity=0.263  Sum_probs=357.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+|+++...      +.+.+.....+.
T Consensus        52 ~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~  125 (508)
T TIGR02262        52 VKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPH  125 (508)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999987532      222222222211


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh-c
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-G  160 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~-~  160 (499)
                      ...++.....      ......+.++......     ...+....++++++++|||||||.||+|+++|+++...+.. .
T Consensus       126 ~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  194 (508)
T TIGR02262       126 LEHRVVVGRP------EAGEVQLAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYA  194 (508)
T ss_pred             ccEEEEeCCC------CcccccHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHh
Confidence            1111111111      0122344444332211     12223445789999999999999999999999999877655 3


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ...++++++|+++..+|++|.+++.. ++.++..|+++++.+...++..+++.|+++++|.+.++|+++..+++......
T Consensus       195 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~  274 (508)
T TIGR02262       195 RNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPA  274 (508)
T ss_pred             HHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccc
Confidence            34568899999999999999999865 77889999999998766778999999999999999999999998877654444


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP  319 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~  319 (499)
                      ...+++|.++++|+.+++++.+.+.+.+ ++++++.||+||++.+...+.. .....+++|.|++++.++++|+++.+++
T Consensus       275 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~  352 (508)
T TIGR02262       275 EDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVA  352 (508)
T ss_pred             cccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCC
Confidence            4567899999999999999999888776 7889999999999876554332 2334578999999999999999999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  +||+++ ++..+.+  ++.+++.+...+       .++||+|||+++++++|.+++.||.+|+++++|.+|+|.+
T Consensus       353 ~g~--~Gel~i~~~~~~~g--Y~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~  421 (508)
T TIGR02262       353 AGE--PGELLISGPSSATM--YWNNRAKTRDTF-------QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFE  421 (508)
T ss_pred             CCC--eeEEEEecCccccc--cCCCHHHhHhhh-------hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHH
Confidence            998  599999 4333322  222222222222       2469999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||+++. .+++|.++++++.++...+ +++.++++..++... .+.+.+.+++.++++|+.|+.|..++++++||+|++|
T Consensus       422 ie~~l~-~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~g  498 (508)
T TIGR02262       422 IESALI-QHPAVLEAAVVGVEDEDGL-IKPKAFIVLRPGQDI-DTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATG  498 (508)
T ss_pred             HHHHHH-hCCCeeEEEEEeccccCCC-ceeEEEEEeCCCCcc-ccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCC
Confidence            999996 8999999999998877666 888899988765432 2344556777788899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 010854          479 KLLRRVLRD  487 (499)
Q Consensus       479 Kv~r~~l~~  487 (499)
                      |++|+.|++
T Consensus       499 Ki~r~~l~~  507 (508)
T TIGR02262       499 KIQRFKLRE  507 (508)
T ss_pred             cEehhhccC
Confidence            999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-56  Score=545.10  Aligned_cols=446  Identities=19%  Similarity=0.180  Sum_probs=361.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++++++++++++|||+++|++++|++|.++.+++.++++++++++++++.......          .....
T Consensus      2050 v~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~----------~~~~~ 2119 (5163)
T PRK12316       2050 VGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERL----------PLPAG 2119 (5163)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhc----------ccccc
Confidence            68999999999999999999999999999999999999999999999999999999987532110          00000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      .. .+...             ....+...      ..........++++|+++|||||||.||||+++|+++.+.+.+..
T Consensus      2120 ~~-~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 2179 (5163)
T PRK12316       2120 VA-RLPLD-------------RDAEWADY------PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAG 2179 (5163)
T ss_pred             cc-eEecc-------------chhhhhcc------CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHH
Confidence            00 00000             00000000      011112345689999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++|+++.+.|++|..++..++.+++.|+++++.+. ..+++.+++.|+++++|++.++|++++.|.+.......
T Consensus      2180 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 2259 (5163)
T PRK12316       2180 ERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR 2259 (5163)
T ss_pred             HhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC
Confidence            88899999999999999999888889999999999977653 34678999999999999999999999999876543322


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC----CccccccccCCCceEEEECCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----QAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                       ..++|.+++|||++++++.+.+.+.+++..+++.||+||++...+.......    ....++|+|+++++++|+|++++
T Consensus      2260 -~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~ 2338 (5163)
T PRK12316       2260 -PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLN 2338 (5163)
T ss_pred             -CcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCC
Confidence             3489999999999999999998887778889999999999865543322211    12257999999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCC-CccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      +++.|.  +|||+| +++...+  ++.+++.+...|...+... +.+||+|||+|++++||+|+++||.||+||++|++|
T Consensus      2339 ~vp~g~--~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~ri 2414 (5163)
T PRK12316       2339 LLAPGM--AGELYLGGEGLARG--YLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRI 2414 (5163)
T ss_pred             CCCCCC--eeEEEecchhhccc--ccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccC
Confidence            999998  699999 6554443  3445555666665555433 678999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.|||++|. .+|+|.+++|++.++. .+ +.++++|++.++...+.+++++    ++.+.|+.|+.|..++++++||+
T Consensus      2415 e~~eIE~~l~-~~~~v~~a~v~~~~~~-~~-~~l~a~v~~~~~~~~~~~~l~~----~l~~~Lp~~~vP~~~~~l~~lP~ 2487 (5163)
T PRK12316       2415 ELGEIEARLQ-AHPAVREAVVVAQDGA-SG-KQLVAYVVPDDAAEDLLAELRA----WLAARLPAYMVPAHWVVLERLPL 2487 (5163)
T ss_pred             ChHHHHHHHh-hCcccceEEEEEEecC-CC-eEEEEEEEecCCCccCHHHHHH----HHHhhCchhcCcceEeeecccCC
Confidence            9999999996 8999999999988765 45 8999999988765545554444    46678999999999999999999


Q ss_pred             CCCcHHHHHHHHHHH
Q 010854          475 TASNKLLRRVLRDQI  489 (499)
Q Consensus       475 t~~GKv~r~~l~~~~  489 (499)
                      |++|||+|++|++..
T Consensus      2488 t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2488 NPNGKLDRKALPKPD 2502 (5163)
T ss_pred             CCCCccCHhhcCCCc
Confidence            999999999997654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7e-57  Score=540.57  Aligned_cols=452  Identities=19%  Similarity=0.201  Sum_probs=364.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++++++++++++|||+++|++++|++|.++.+.+.+++++++++++|++........         .....
T Consensus      1621 v~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~---------~~~~~ 1691 (3956)
T PRK12467       1621 VGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLP---------LPDGL 1691 (3956)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCc---------cccCC
Confidence            689999999999999999999999999999999999999999999999999999999875321100         00001


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+.. .              .++....     ..........++++|+++|||||||.||||+++|+++.+.+.+..
T Consensus      1692 ~~~~~~~-~--------------~~~~~~~-----~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~ 1751 (3956)
T PRK12467       1692 RSLVLDQ-E--------------DDWLEGY-----SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQ 1751 (3956)
T ss_pred             cEEEecc-c--------------cchhccC-----CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHH
Confidence            1111110 0              0010100     011112235678999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|+++...|++|..+++.++.+++.|+++++.+..  .+++.+++.|+++++|++.++|++++.|.+... ..
T Consensus      1752 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~ 1830 (3956)
T PRK12467       1752 EAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QV 1830 (3956)
T ss_pred             HhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-cc
Confidence            888999999999999999999998899999999999998743  357899999999999999999999999987522 23


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      .+++++|.+++|||++++++.+.+.+.+++..++|.||+||++..++.....    ......++|+|++++.++|+|+.+
T Consensus      1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~ 1910 (3956)
T PRK12467       1831 EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASL 1910 (3956)
T ss_pred             ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCC
Confidence            4578999999999999999999888887778899999999998655432221    112346899999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCC-CCccccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK  393 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~  393 (499)
                      ++++.|.  +|||++ +++...+  ++.+++.+...|...|.. .+.+||+|||+|++++||+|+++||.||+||++|++
T Consensus      1911 ~~vp~G~--~GEl~i~G~~v~~G--Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~r 1986 (3956)
T PRK12467       1911 NPVPIGV--AGELYLGGVGLARG--YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFR 1986 (3956)
T ss_pred             CCCCCCC--ceEEEecccccccc--ccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEE
Confidence            9999998  599999 5554443  344556666666655554 367899999999999999999999999999999999


Q ss_pred             echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCceeeeEEEEc
Q 010854          394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVV  469 (499)
Q Consensus       394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~~p~~~~~~  469 (499)
                      |+|.|||++|. .+|+|.+++|++.+ ...+ +.++++|+...+...+    .....+.+++++++.|+.|++|..++++
T Consensus      1987 Iel~eIE~~l~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l 2063 (3956)
T PRK12467       1987 IELGEIEARLR-EQGGVREAVVIAQD-GANG-KQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFL 2063 (3956)
T ss_pred             echHHHHHHHH-hCCCcceEEEEEec-CCCC-cEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhh
Confidence            99999999996 89999999999886 3344 8899999976543221    1123456777788899999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHH
Q 010854          470 PEFPRTASNKLLRRVLRDQIK  490 (499)
Q Consensus       470 ~~iP~t~~GKv~r~~l~~~~~  490 (499)
                      ++||+|++||++|++|++...
T Consensus      2064 ~~lP~t~~GKidr~~L~~~~~ 2084 (3956)
T PRK12467       2064 ARMPLTPNGKLDRKALPAPDA 2084 (3956)
T ss_pred             hcCCCCCCCCcchhhCCCCcc
Confidence            999999999999999976543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-55  Score=453.09  Aligned_cols=459  Identities=22%  Similarity=0.263  Sum_probs=350.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+|+++.+..      ...........
T Consensus        70 i~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~------~~~~~~~~~~~  143 (557)
T PRK07059         70 LAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFAT------TVQQVLAKTAV  143 (557)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHH------HHHHhhcccCC
Confidence            689999999999999999999999999999999999999999999999999999999875421      11111111111


Q ss_pred             ceEEecccCCC------------------CCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010854           82 KAIVLPAIGND------------------VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP  143 (499)
Q Consensus        82 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p  143 (499)
                      ...........                  ......++...+++++.....    .........++++++++|||||||.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~P  219 (557)
T PRK07059        144 KHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVS  219 (557)
T ss_pred             ceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCC
Confidence            11111100000                  000011233455555443321    11223345678999999999999999


Q ss_pred             ceEEecchhhHHHhhhcce----eccCc---CCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHH
Q 010854          144 KAIPWTQLSSIRCTAEGWA----HIDLK---VGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQD  215 (499)
Q Consensus       144 k~v~~s~~~~~~~~~~~~~----~~~~~---~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~  215 (499)
                      |+|+++|.++...+.....    .+...   ....++..+|++|.+++.. .+.++..|++.++.+...++..+++.+++
T Consensus       220 K~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~  299 (557)
T PRK07059        220 KGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKK  299 (557)
T ss_pred             cEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHH
Confidence            9999999998765433221    11111   2346778899999988754 77788889988887755577889999999


Q ss_pred             hCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCc
Q 010854          216 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA  295 (499)
Q Consensus       216 ~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~  295 (499)
                      +++|.+.++|+++..+.+.....+.++++++.++.+|+.+++.+.+.+...+ ++.+++.||+||++..+..........
T Consensus       300 ~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~  378 (557)
T PRK07059        300 YQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEF  378 (557)
T ss_pred             hCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCc
Confidence            9999999999999999988766667788999999999999999888887665 789999999999987655444333344


Q ss_pred             cccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecC
Q 010854          296 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       296 ~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  374 (499)
                      ..++|.|+++++++++|++|++++.|+  .|||++ ++..+.+  ++.+++.+...      ...++||+|||+++++++
T Consensus       379 ~~~vG~p~~g~~v~i~d~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~~~~~------~~~~g~~~TGDl~~~~~~  448 (557)
T PRK07059        379 SGTIGLPLPSTEVSIRDDDGNDLPLGE--PGEICIRGPQVMAG--YWNRPDETAKV------MTADGFFRTGDVGVMDER  448 (557)
T ss_pred             CCcccCccCCcEEEEECCCCCCCCCCC--ceEEEEeCCccchh--hhcCHHHHhhh------cccCCceecCcEEEEcCC
Confidence            678999999999999999999999998  599999 5443332  22222222111      234679999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ  454 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~  454 (499)
                      |++++.||.+|+++++|++|+|.+||+++. .+++|.+++|++.++...+ +.++++++.... ..+.+++.+    .+.
T Consensus       449 g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~-~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~~-~~~~~~l~~----~~~  521 (557)
T PRK07059        449 GYTKIVDRKKDMILVSGFNVYPNEIEEVVA-SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKDP-ALTEEDVKA----FCK  521 (557)
T ss_pred             CcEEEecccccceEECCEEEcHHHHHHHHH-hCCceeEEEEEecccCCCC-eeEEEEEEeCCC-CCCHHHHHH----HHH
Confidence            999999999999999999999999999996 8999999999999888777 888888886542 334444444    455


Q ss_pred             hhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHH
Q 010854          455 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ  488 (499)
Q Consensus       455 ~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~  488 (499)
                      +.|+.+..|..+++++++|+|++||++|+.|+++
T Consensus       522 ~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        522 ERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             HhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            6889999999999999999999999999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-55  Score=450.16  Aligned_cols=443  Identities=19%  Similarity=0.185  Sum_probs=338.8

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCc
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK   82 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (499)
                      ++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++.+|+++....      .+... . .+..
T Consensus        50 ~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~-~-~~~~  121 (540)
T PRK13388         50 DRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRP------LLDGL-D-LPGV  121 (540)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhH------HHHhh-c-ccCc
Confidence            68999999999999999999999999999999999999999999999999999999875321      11111 0 1111


Q ss_pred             eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce
Q 010854           83 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA  162 (499)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~  162 (499)
                      ..+...            ...+.+++.....     ........++++++++|||||||.||+|.++|+++...+.....
T Consensus       122 ~~i~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~  184 (540)
T PRK13388        122 RVLDVD------------TPAYAELVAAAGA-----LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTE  184 (540)
T ss_pred             eEEEcc------------chhhhhhhccccC-----cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHH
Confidence            111110            0123333321111     01112356799999999999999999999999999888877777


Q ss_pred             eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          163 HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       163 ~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      .++++.+|+++..+|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++..+|+.+..++.........
T Consensus       185 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~  263 (540)
T PRK13388        185 RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDA  263 (540)
T ss_pred             HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcccc
Confidence            788999999999999999999876 566889999998875 567889999999999999999999999988764432222


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEE-----------E
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------I  310 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------i  310 (499)
                      ...++.+ . |+.+.+.....+.+.+ +..+++.||+||++.++....   ....+++|.|++++++.           +
T Consensus       264 ~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~  337 (540)
T PRK13388        264 DNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVAR  337 (540)
T ss_pred             ccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCcccccee
Confidence            3456643 3 5556777777777665 688999999999987654332   22457899999997652           4


Q ss_pred             ECCCCCCCCC-CCCcceeeEec--ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCee
Q 010854          311 LDECGVPYPD-DQPCVGEVGLF--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM  387 (499)
Q Consensus       311 ~d~~g~~~~~-g~~~~Gei~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i  387 (499)
                      +|++|+++.. +.  +||+++.  +..+.+  ++.+++.+...+       .++||+|||+|++|++|++++.||.+|+|
T Consensus       338 ~d~~g~~~~~~~~--~GEl~v~~g~~~~~g--Y~~~~~~t~~~~-------~~g~~~TGD~~~~~~dg~l~i~GR~~d~i  406 (540)
T PRK13388        338 FDAHGALLNADEA--IGELVNTAGAGFFEG--YYNNPEATAERM-------RHGMYWSGDLAYRDADGWIYFAGRTADWM  406 (540)
T ss_pred             ccCccccccCCCc--ceEEEEecCCccccc--ccCChHHHHHHh-------hcCceeccceEEEcCCCcEEEeccCCceE
Confidence            5566665533 33  6999984  333322  222233222222       14699999999999999999999999999


Q ss_pred             eeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEE
Q 010854          388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK  467 (499)
Q Consensus       388 ~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~  467 (499)
                      |++|++|+|.+||+++. .+|+|.+++|++++++..| +.+++++++.++...+.+++.+++++  ...|+.|+.|..++
T Consensus       407 ~~~G~~v~p~eIE~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~l~~--~~~l~~~~~P~~~~  482 (540)
T PRK13388        407 RVDGENLSAAPIERILL-RHPAINRVAVYAVPDERVG-DQVMAALVLRDGATFDPDAFAAFLAA--QPDLGTKAWPRYVR  482 (540)
T ss_pred             EECCEEeCHHHHHHHHH-hCCCceEEEEEEccCCCCC-ceeEEEEEECCCCcCCHHHHHHHHHh--hccCCcccCCcEEE
Confidence            99999999999999996 8999999999999988777 77888888877766666677766543  13699999999999


Q ss_pred             EcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          468 VVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       468 ~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++++||+|++||++|++|+++....
T Consensus       483 ~v~~iP~t~~GKv~R~~L~~~~~~~  507 (540)
T PRK13388        483 IAADLPSTATNKVLKRELIAQGWAT  507 (540)
T ss_pred             EeccCCCCCcceeeHHhHHHhccCC
Confidence            9999999999999999999876543

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-55  Score=454.34  Aligned_cols=464  Identities=19%  Similarity=0.214  Sum_probs=350.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|++|..+..++.+++++++++++++++...      +.+.+.......
T Consensus        80 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~  153 (567)
T PRK06178         80 VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSL  153 (567)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCc
Confidence            67999999999999999999999999999999999999999999999999999999987532      122222222212


Q ss_pred             ceEEecccCCCCCC----CCC-------cCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecc
Q 010854           82 KAIVLPAIGNDVGI----PLR-------EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ  150 (499)
Q Consensus        82 ~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~  150 (499)
                      ..++..........    ...       .....+.++......  ...........++++++++|||||||.||+|+++|
T Consensus       154 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~  231 (567)
T PRK06178        154 RHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQ  231 (567)
T ss_pred             ceEEEeccccccccccccccccccccccccccccccHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEecc
Confidence            22221110000000    000       001122223222111  01111223356799999999999999999999999


Q ss_pred             hhhHHHhhhcce-eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHH
Q 010854          151 LSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV  228 (499)
Q Consensus       151 ~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l  228 (499)
                      .++......... ...++.+|+++.++|++|.+|+.. ++.+++.|+++++.+ .+++..+++.++++++|.+.++|..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~  310 (567)
T PRK06178        232 RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNA  310 (567)
T ss_pred             HHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHH
Confidence            998876554432 256788999999999999999864 888999999999987 56789999999999999999999999


Q ss_pred             HHHHccCCCCcccccceeEEEee--cCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC------CCcccccc
Q 010854          229 KAWRNTNCLEGLDWTKIRSFAST--GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFS  300 (499)
Q Consensus       229 ~~l~~~~~~~~~~l~~l~~i~~~--G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~------~~~~~~~g  300 (499)
                      ..+.........++++++.+..+  ++.++++..+.+...+....+.+.||+||++..........      .....++|
T Consensus       311 ~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG  390 (567)
T PRK06178        311 VELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVG  390 (567)
T ss_pred             HHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccc
Confidence            99987765556667788876544  58889998888887764333445899999875433222111      12346789


Q ss_pred             ccCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEE
Q 010854          301 TATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII  378 (499)
Q Consensus       301 ~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~  378 (499)
                      .|+||++++++| +++.+++.|+  +||+++ ++..+.+  ++.+++.+...+       .++||+|||+++++++|+++
T Consensus       391 ~p~~g~~v~v~d~~~~~~~~~g~--~Gel~v~g~~v~~g--Y~~~~~~~~~~~-------~dg~~~TGDl~~~~~~g~l~  459 (567)
T PRK06178        391 LPVPGTEFKICDFETGELLPLGA--EGEIVVRTPSLLKG--YWNKPEATAEAL-------RDGWLHTGDIGKIDEQGFLH  459 (567)
T ss_pred             cccCCcEEEEEcCCCCCcCCCCC--ceEEEEECCccccc--ccCChhhhhhcc-------cCCceeecceEEEecCCeEE
Confidence            999999999999 7899999998  599999 5544432  222222222222       14699999999999999999


Q ss_pred             EecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcC
Q 010854          379 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN  458 (499)
Q Consensus       379 ~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~  458 (499)
                      ++||.+|+|+++|.+|+|.+||+++. .+++|.++++++.+++..+ +.++++|++.++...+.+++.+.    +++.++
T Consensus       460 i~GR~~d~i~~~G~~i~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~l~  533 (567)
T PRK06178        460 YLGRRKEMLKVNGMSVFPSEVEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKPGADLTAAALQAW----CRENMA  533 (567)
T ss_pred             EEecccccEEECCEEECHHHHHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCCCCcCCHHHHHHH----HHhcCc
Confidence            99999999999999999999999996 8999999999999887777 88899999887665566555554    556889


Q ss_pred             CceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          459 PLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       459 ~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      .|+.|. +++++++|+|++||++|++|++++++.
T Consensus       534 ~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        534 VYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             ccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence            999996 888999999999999999999988653

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-55  Score=448.28  Aligned_cols=447  Identities=20%  Similarity=0.177  Sum_probs=340.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++.+++++....      ..... .....
T Consensus        46 v~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~-~~~~~  118 (501)
T PRK13390         46 LRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDG------LAAKV-GADLP  118 (501)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhh------HHHHh-hhccc
Confidence            689999999999999999999999999999999999999999999999999999999764210      00000 00000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEec--chhhHHHh--
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCT--  157 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s--~~~~~~~~--  157 (499)
                      ..+.+.  ..      .....++++.......         .....++.++++|||||||.||+|+++  |.++....  
T Consensus       119 ~~~~~~--~~------~~~~~~~~~~~~~~~~---------~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~  181 (501)
T PRK13390        119 LRLSFG--GE------IDGFGSFEAALAGAGP---------RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDP  181 (501)
T ss_pred             eEEEec--Cc------ccccccHHHHhcccCC---------CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhh
Confidence            111111  00      0112233333221100         011223579999999999999999964  44443321  


Q ss_pred             --hhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccC
Q 010854          158 --AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN  235 (499)
Q Consensus       158 --~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  235 (499)
                        ......+.+..+++++..+|++|.+++...+..+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  260 (501)
T PRK13390        182 IVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLD  260 (501)
T ss_pred             hHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence              11123457888999999999999998765445567899998876 467899999999999999999999999998754


Q ss_pred             CC--CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECC
Q 010854          236 CL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE  313 (499)
Q Consensus       236 ~~--~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~  313 (499)
                      ..  ...+++++|.++.+|+++++++.+.+.+.+ +..+++.||+||++.++...........+++|.|.++ .++|+|+
T Consensus       261 ~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~  338 (501)
T PRK13390        261 ADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDD  338 (501)
T ss_pred             chhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECC
Confidence            32  345678999999999999999988887765 6789999999999865443332223345789999999 7999999


Q ss_pred             CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      ++++++.|+  .|||++ ++..+.+  ++.+++.+...+..    .+++|++|||++++|++|++++.||.||+++++|+
T Consensus       339 ~~~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~t~~~~~~----~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~  410 (501)
T PRK13390        339 DGNELPAGR--IGTVYFERDRLPFR--YLNDPEKTAAAQHP----AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGV  410 (501)
T ss_pred             CCCCCCCCC--ceEEEEecCCcccc--ccCChhhhHHhhcc----CCCceEEcCceEEECCCCeEEEeeccccceeECCe
Confidence            999999999  599999 4443332  22233333322211    23579999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCC
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF  472 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~i  472 (499)
                      +|+|.+||+++. .+|+|.++++++++++..+ +.+++++++..+...+ +++.+.+.+++..+|+.|+.|..++++++|
T Consensus       411 ~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~~-e~~~~~v~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~~~~~~~i  487 (501)
T PRK13390        411 NIYPQETENALT-MHPAVHDVAVIGVPDPEMG-EQVKAVIQLVEGIRGS-DELARELIDYTRSRIAHYKAPRSVEFVDEL  487 (501)
T ss_pred             eeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-ceeEEEEEecCCCCcc-hhhHHHHHHHHHHhcccCCCCcEEEEeccC
Confidence            999999999996 8999999999999998877 8899999887654333 234456777788899999999999999999


Q ss_pred             CCCCCcHHHHHHHH
Q 010854          473 PRTASNKLLRRVLR  486 (499)
Q Consensus       473 P~t~~GKv~r~~l~  486 (499)
                      |+|++||++|++|+
T Consensus       488 P~t~~GKi~r~~L~  501 (501)
T PRK13390        488 PRTPTGKLVKGLLR  501 (501)
T ss_pred             CCCCccceehhhcC
Confidence            99999999999874

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-55  Score=451.83  Aligned_cols=464  Identities=23%  Similarity=0.278  Sum_probs=352.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++.+++++.......      ........
T Consensus        71 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~~~~~~  144 (563)
T PRK06710         71 VEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVT------NVQSATKI  144 (563)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhh------ccchhhcc
Confidence            679999999999999999999999999999999999999999999999999999999875422111      11110011


Q ss_pred             ceEEecccCCCCCCC--------------------CCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 010854           82 KAIVLPAIGNDVGIP--------------------LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG  141 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG  141 (499)
                      ..+++.........+                    .......|..+....     ...........+++++++|||||||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGTTG  219 (563)
T PRK06710        145 EHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-----NTGVEVPCDPENDLALLQYTGGTTG  219 (563)
T ss_pred             ceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhcc-----ccccccccCCCCCEEEEEcCCCCCC
Confidence            111111000000000                    000000111111100     0011111133579999999999999


Q ss_pred             CCceEEecchhhHHHhhhcce-eccCc-CCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCC
Q 010854          142 EPKAIPWTQLSSIRCTAEGWA-HIDLK-VGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  218 (499)
Q Consensus       142 ~pk~v~~s~~~~~~~~~~~~~-~~~~~-~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  218 (499)
                      .||+|.++|+++...+..... .++.. .++++++++|++|.+++.. ++.+++.|+++++.+ .+++..+++.|+++++
T Consensus       220 ~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~  298 (563)
T PRK06710        220 FPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKV  298 (563)
T ss_pred             CCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCC
Confidence            999999999998755432222 23333 3457889999999998865 667889999999876 4678899999999999


Q ss_pred             eEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccc
Q 010854          219 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  298 (499)
Q Consensus       219 t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  298 (499)
                      |++.++|+++..+++.......+++++|.++++|+++++++..++...+ +..+++.||+||++..............++
T Consensus       299 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  377 (563)
T PRK06710        299 TLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGS  377 (563)
T ss_pred             eEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCc
Confidence            9999999999999887665566778999999999999999998887665 788999999999987554333323334578


Q ss_pred             ccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCce
Q 010854          299 FSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY  376 (499)
Q Consensus       299 ~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~  376 (499)
                      +|+|.+++.++++| +++.+++.|+  .|||++ ++..+.+  ++.+++.+...+       .++||+|||+++++++|+
T Consensus       378 ~G~~~~~~~~~i~~~~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~  446 (563)
T PRK06710        378 IGVPWPDTEAMIMSLETGEALPPGE--IGEIVVKGPQIMKG--YWNKPEETAAVL-------QDGWLHTGDVGYMDEDGF  446 (563)
T ss_pred             cCCCCCCCeEEEEECCCCccCCCCC--ceEEEEecCccchh--hhCChHHHhhhc-------ccCcccccceEEEcCCCc
Confidence            99999999999998 7889999998  499999 5544432  222333322222       257999999999999999


Q ss_pred             EEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh
Q 010854          377 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK  456 (499)
Q Consensus       377 l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~  456 (499)
                      +++.||.+|+|+++|.+|+|.+||+++. .+++|.+++|++.++...+ +.++++++..++...+.+++.++    +.+.
T Consensus       447 ~~~~GR~dd~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~----~~~~  520 (563)
T PRK06710        447 FYVKDRKKDMIVASGFNVYPREVEEVLY-EHEKVQEVVTIGVPDPYRG-ETVKAFVVLKEGTECSEEELNQF----ARKY  520 (563)
T ss_pred             EEEeeccccEEEECCEEECHHHHHHHHH-hCcceeeEEEEccccCCcC-ceeEEEEEECCCCCCCHHHHHHH----HHHh
Confidence            9999999999999999999999999996 8999999999999988777 88899999887665566555555    5567


Q ss_pred             cCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          457 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       457 l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      |+.|+.|..+.++++||+|++||++|+.|+++++.+-+.
T Consensus       521 l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~  559 (563)
T PRK06710        521 LAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNED  559 (563)
T ss_pred             cccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcc
Confidence            899999999999999999999999999999988765443

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-54  Score=446.05  Aligned_cols=464  Identities=19%  Similarity=0.163  Sum_probs=350.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+++++...      ..+..+....+.
T Consensus        50 ~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~  123 (533)
T PRK07798         50 LGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPK  123 (533)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCC
Confidence            68899999999999999999999999999999999999999999999999999999987432      222222222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++...... ......+..++++++.....     ...... ..++.++++|||||||.||+|+++|+++........
T Consensus       124 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  196 (533)
T PRK07798        124 LRTLVVVEDGS-GNDLLPGAVDYEDALAAGSP-----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGR  196 (533)
T ss_pred             ccEEEEecCCc-ccccCCccccHHHHHhccCC-----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhh
Confidence            22222221111 11112245567777654332     111111 223457899999999999999999999876544321


Q ss_pred             e---------eccC------cCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecch
Q 010854          162 A---------HIDL------KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVP  225 (499)
Q Consensus       162 ~---------~~~~------~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P  225 (499)
                      .         ...+      ..+++++..+|++|.+++..++.+++.|+++++.+. ..++..+++.++++++|.+.++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~  276 (533)
T PRK07798        197 DFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVG  276 (533)
T ss_pred             hhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEech
Confidence            1         1111      567889999999999999889999999999999873 45678999999999999999998


Q ss_pred             HHHHH-HHccCC-CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccccc--c
Q 010854          226 SLVKA-WRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--T  301 (499)
Q Consensus       226 ~~l~~-l~~~~~-~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g--~  301 (499)
                      +.+.. +..... ....++++++.++++|+.+++++..++...+++..+++.||+||++...........   ...|  .
T Consensus       277 ~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~---~~~g~~~  353 (533)
T PRK07798        277 DAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA---VHTGGPR  353 (533)
T ss_pred             HHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCCC---ccCCCCc
Confidence            75533 333322 334567899999999999999999999888777889999999998754443322111   2233  6


Q ss_pred             cCCCceEEEECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEec
Q 010854          302 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG  381 (499)
Q Consensus       302 ~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~g  381 (499)
                      +.++..++++|+++++++.|+.+.|+++.++..+.+  ++.++..+...|.   ...+.+||+|||++++|++|++++.|
T Consensus       354 ~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~g--y~~~~~~t~~~f~---~~~~~~~~~TGD~~~~~~~g~l~~~G  428 (533)
T PRK07798        354 FTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLG--YYKDPEKTAETFP---TIDGVRYAIPGDRARVEADGTITLLG  428 (533)
T ss_pred             cCCCceEEEECCCCCCCCCCCCCeeEEEeecCcccc--ccCChhhhHHhhc---cCCCCceEEcCcEEEEcCCCcEEEEc
Confidence            788999999999999999888534777765433322  2223333322222   13456799999999999999999999


Q ss_pred             ccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCce
Q 010854          382 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF  461 (499)
Q Consensus       382 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  461 (499)
                      |.+|+++.+|.+|+|.+||+++. .+++|.++++++.++...+ +.+.+++++.++...+.+++.++    +++.|+.|+
T Consensus       429 R~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~----l~~~l~~~~  502 (533)
T PRK07798        429 RGSVCINTGGEKVFPEEVEEALK-AHPDVADALVVGVPDERWG-QEVVAVVQLREGARPDLAELRAH----CRSSLAGYK  502 (533)
T ss_pred             cccceEecCCEEeCHHHHHHHHH-hCccceeEEEEeccCcccC-ceEEEEEEECCCCCCCHHHHHHH----HhhhcccCC
Confidence            99999999999999999999996 8999999999999887777 88888998887665566555555    556788999


Q ss_pred             eeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          462 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       462 ~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +|..++++++||+|++||++|+.|+++++++
T Consensus       503 ~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~~  533 (533)
T PRK07798        503 VPRAIWFVDEVQRSPAGKADYRWAKEQAAER  533 (533)
T ss_pred             CCeEEEEcccCCCCCcchhhHHHHhhhhccC
Confidence            9999999999999999999999999988764

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.6e-55  Score=458.02  Aligned_cols=457  Identities=14%  Similarity=0.081  Sum_probs=334.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCC-----HHHHHHHhhcCCeeEEEecccccccCccccchhhhh
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL   76 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   76 (499)
                      +++||+|+++++|+++|++++|||+++|++++|+++.++     .+++.+++++++++++|+++...    ....+... 
T Consensus        91 v~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~-  165 (614)
T PRK08180         91 LSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA----FARALAAV-  165 (614)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH----HHHHHhhh-
Confidence            689999999999999999999999999999999999988     79999999999999999975310    00000000 


Q ss_pred             hcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           77 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      ... ....+... ...    ......++.++......  ...........++|+++|+|||||||.||||++||+++...
T Consensus       166 ~~~-~~~~i~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~  237 (614)
T PRK08180        166 VPA-DVEVVAVR-GAV----PGRAATPFAALLATPPT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCAN  237 (614)
T ss_pred             ccC-CceEEEec-CCC----CCcccccHHHHhccccc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHH
Confidence            011 11111111 100    01123567776653221  00011112345799999999999999999999999999888


Q ss_pred             hhhcceeccCc--CCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCCh---hHHHHHHHHhCCeEEecchHHHHH
Q 010854          157 TAEGWAHIDLK--VGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       157 ~~~~~~~~~~~--~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~---~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      +......++..  .++++++++|++|.+++.. ++.+++.|+++++.+..+++   ..+++.++++++|+++++|+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~  317 (614)
T PRK08180        238 QQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEM  317 (614)
T ss_pred             HHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHH
Confidence            77665555553  5689999999999999765 88899999999987643333   467889999999999999999999


Q ss_pred             HHccCCC----CcccccceeEEEeecCCCChhhHHHHHhh----cc-cCceeccccccceeeeeecCCCCCCCccccccc
Q 010854          231 WRNTNCL----EGLDWTKIRSFASTGETSNVDDDLWLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFST  301 (499)
Q Consensus       231 l~~~~~~----~~~~l~~l~~i~~~G~~l~~~~~~~~~~~----~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~  301 (499)
                      |++....    ...+++++|.+++||+++++++.+.+.+.    +. +..+++.||+||++........ .....+++|.
T Consensus       318 l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~  396 (614)
T PRK08180        318 LVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGL  396 (614)
T ss_pred             HHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccC
Confidence            8764322    23457899999999999999998888754    21 2679999999999865543332 2345689999


Q ss_pred             cCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEe----ecCce
Q 010854          302 ATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR----TVGGY  376 (499)
Q Consensus       302 ~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~----~~~G~  376 (499)
                      |+||++++|+|+.+         .|||+| ++..+.+  ++.+++.+...|      +.++||+|||+|++    |++|+
T Consensus       397 p~pg~~v~i~d~~~---------~GEi~vrg~~v~~G--Y~~~p~~t~~~~------~~dgw~~TGDlg~~~~~~d~~g~  459 (614)
T PRK08180        397 PAPGCEVKLVPVGG---------KLEVRVKGPNVTPG--YWRAPELTAEAF------DEEGYYRSGDAVRFVDPADPERG  459 (614)
T ss_pred             ccCCcEEEEecCCC---------CcEEEEecCccchh--hcCChhHhHhhc------ccCCceeccceEEecCCcCCCCc
Confidence            99999999998522         399999 5544432  222333333222      34689999999999    46899


Q ss_pred             EEEecccCCeee-eCceeec--hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCC---------------
Q 010854          377 IIVQGRADDTMN-LGGIKTS--SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF---------------  438 (499)
Q Consensus       377 l~~~gR~~d~i~-~~G~~v~--~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~---------------  438 (499)
                      ++++||.||+++ .+|++|+  |.|+|.++. .||.|.+++|++.++     +.+.++|++.++.               
T Consensus       460 l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~-~~p~V~~a~V~g~~~-----~~~~a~V~~~~~~~~~~~~~~~~~~~~~  533 (614)
T PRK08180        460 LMFDGRIAEDFKLSSGTWVSVGPLRARAVSA-GAPLVQDVVITGHDR-----DEIGLLVFPNLDACRRLAGLLADASLAE  533 (614)
T ss_pred             eEEecchhhhEEcCCCcEecchhhhHHHHhh-cCchhheEEEEcCCC-----CceEEEEEcCHHHHHHHHhhcccCCHHH
Confidence            999999999888 5798766  788889886 899999999999876     4567888876541               


Q ss_pred             CCCHHHHHHHHHHHHHhh----cCCceeeeEEEEcCCCCCC------CCcHHHHHHHHHHHHhhhhh
Q 010854          439 TSQPDKLKMIFSKAIQSK----LNPLFKVSLVKVVPEFPRT------ASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       439 ~~~~~~l~~~~~~~~~~~----l~~~~~p~~~~~~~~iP~t------~~GKv~r~~l~~~~~~~~~~  495 (499)
                      ..+.+++++++++.+.+.    ...+.+|+++++++++|++      ++||+.|+++.+.|++++++
T Consensus       534 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~  600 (614)
T PRK08180        534 VLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEA  600 (614)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHH
Confidence            123345666665554321    1223389999999999975      56689999999999998875

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-55  Score=472.13  Aligned_cols=449  Identities=16%  Similarity=0.115  Sum_probs=329.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.   +++.+++++++++++|++.....         .... ...
T Consensus       494 v~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~---------~~~~-~~~  560 (994)
T PRK07868        494 VRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLE---------AARQ-LPG  560 (994)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHH---------HHHh-cCc
Confidence            6899999999999999999999999999999999985   68899999999999999864321         1111 112


Q ss_pred             ceEEecccCC-CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ..+++..... ............++++.....  ..+....+....++++++++|| ||||.||++.++|.++.......
T Consensus       561 ~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~  637 (994)
T PRK07868        561 RVLVLGGGESRDLDLPDDADVIDMEKIDPDAV--ELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGT  637 (994)
T ss_pred             eEEEecCCccccccCCcchhhhhhhhcCcccc--cCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhh
Confidence            2222221100 000000001111111111000  0000011112236899999998 58888888888887765554444


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ...+++..+|++++.+|++|.+++...+.+++.|++.+++...++++.+++.|+++++|++.++|++++.|++.......
T Consensus       638 ~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~  717 (994)
T PRK07868        638 ASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLH  717 (994)
T ss_pred             hhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccC
Confidence            45567889999999999999999987444444555544444467899999999999999999999999999886544445


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCc-eEEEE--------
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVIL--------  311 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~i~--------  311 (499)
                      +++++|.++.  +.+++++.+.+.+.+++..+++.||+||++.... ..  .....+++|+|+|++ +++|.        
T Consensus       718 ~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~  792 (994)
T PRK07868        718 GNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDL  792 (994)
T ss_pred             CCCceEEEec--CCCCHHHHHHHHHHhCchheeeeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCc
Confidence            6778998763  3488999999988886688999999999875432 11  224567999999998 66653        


Q ss_pred             ---CCCC--CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCC
Q 010854          312 ---DECG--VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD  385 (499)
Q Consensus       312 ---d~~g--~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d  385 (499)
                         |++|  ++++.|+  .|||++ ++.+++ +..    .....+|     ..+++||+|||+|++|+||+|+++||.||
T Consensus       793 li~d~~G~~~~~~~ge--~Gel~~~~~~~~~-p~~----t~~~~~~-----~~~dgw~~TGDlg~~d~dG~l~~~GR~dd  860 (994)
T PRK07868        793 ILEDDRGFVRRAEVNE--VGVLLARARGPID-PTA----SVKRGVF-----APADTWISTEYLFRRDDDGDYWLVDRRGS  860 (994)
T ss_pred             eeecCCceEEEcCCCC--ceEEEEecCCCCC-hhh----hhHhccc-----ccCCEEEeccceEEEcCCCCEEEeccCCC
Confidence               4556  5677888  499999 444331 100    0001122     13679999999999999999999999999


Q ss_pred             eeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeE
Q 010854          386 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL  465 (499)
Q Consensus       386 ~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~  465 (499)
                      +||++|.+|+|.|||++|. .||+|.+++|++++++. + +.++++|+++++...+.++|+++++     .++.|++|..
T Consensus       861 ~Ik~~G~~I~p~EIE~~L~-~hp~V~~aaVvg~~d~~-~-~~~~a~Vv~~~~~~~~~~~L~~~l~-----~l~~y~vP~~  932 (994)
T PRK07868        861 VIRTARGPVYTEPVTDALG-RIGGVDLAVTYGVEVGG-R-QLAVAAVTLRPGAAITAADLTEALA-----SLPVGLGPDI  932 (994)
T ss_pred             EEEeCCceEcHHHHHHHHh-cCCCeeEEEEEeecCCC-C-ceEEEEEEeCCCCcCCHHHHHHHHH-----hCCCCcCCeE
Confidence            9999999999999999996 99999999999998765 4 7889999988776667766666653     3899999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHHHHHh
Q 010854          466 VKVVPEFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       466 ~~~~~~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      |+++++||+|++||++|++|++....
T Consensus       933 i~~v~~lP~T~sGKi~r~~L~~~~lp  958 (994)
T PRK07868        933 VHVVPEIPLSATYRPTVSALRAAGIP  958 (994)
T ss_pred             EEEeCCCCCCccccEehHHHHhcCCC
Confidence            99999999999999999999876544

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-54  Score=439.62  Aligned_cols=457  Identities=20%  Similarity=0.146  Sum_probs=356.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..++++++++.+|+++....      .......... 
T Consensus        33 ~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~------~~~~~~~~~~~  106 (502)
T PRK08276         33 LREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALAD------TAAELAAELPA  106 (502)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEccchhh------HHHHHhhhccc
Confidence            689999999999999999999999999999999999999999999999999999999875431      1111111111 


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHh---
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---  157 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~---  157 (499)
                      ....+......      ......+.+.......        ......++.++++|||||||.||+|.++|.++....   
T Consensus       107 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~  172 (502)
T PRK08276        107 GVPLLLVVAGP------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPG  172 (502)
T ss_pred             cccEEEEeCCC------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECCCCCCCCceEEEccCCcchhhhhH
Confidence            11111111110      1223345544332111        111245778999999999999999999987654322   


Q ss_pred             ---hhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          158 ---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       158 ---~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                         ...........+++++++.|++|.+++...+.++..|+++++.+ ..++..+++.++++++|++.++|+++..+++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  251 (502)
T PRK08276        173 MMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALALIERYRVTHSQLVPTMFVRMLKL  251 (502)
T ss_pred             HhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC
Confidence               22222223356788999999999999887778999999998876 46789999999999999999999999999876


Q ss_pred             CC--CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC
Q 010854          235 NC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       235 ~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d  312 (499)
                      ..  ....+++++|.++++|++++.++.+++.+.+ +..+++.||+||++.++...........+++|.|+ ++.++++|
T Consensus       252 ~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d  329 (502)
T PRK08276        252 PEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD  329 (502)
T ss_pred             ccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC
Confidence            54  2345788999999999999999999988766 67799999999998755444333334557899999 88999999


Q ss_pred             CCCCCCCCCCCcceeeEec-ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854          313 ECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG  391 (499)
Q Consensus       313 ~~g~~~~~g~~~~Gei~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G  391 (499)
                      +++.+++.|+  .||+++. +....  .++.++..+...+      ..++||+|||+++++++|.+++.||.||+++++|
T Consensus       330 ~~~~~~~~g~--~Gel~v~~~~~~~--gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G  399 (502)
T PRK08276        330 EDGNELPPGE--IGTVYFEMDGYPF--EYHNDPEKTAAAR------NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGG  399 (502)
T ss_pred             CCCCCCcCCC--ceEEEEECCCccc--hhcCCHHHHHHHh------cCCCceeecceEEEcCCcCEEEeccCcceEEeCC
Confidence            9999999998  5999994 44432  2333333333222      2347999999999999999999999999999999


Q ss_pred             eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCC
Q 010854          392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE  471 (499)
Q Consensus       392 ~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~  471 (499)
                      .+|+|.+||.++. .+|+|.++++++..++..+ +.++++|++.++...+ +++.+.+.+.++++|+.++.|..++++++
T Consensus       400 ~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~p~~i~~~~~  476 (502)
T PRK08276        400 VNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAG-DALAAELIAWLRGRLAHYKCPRSIDFEDE  476 (502)
T ss_pred             EEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECCCCCCC-hhhHHHHHHHHHhhccCCCCCcEEEEecC
Confidence            9999999999997 8999999999999988777 8999999988754433 34455677778889999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhh
Q 010854          472 FPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       472 iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      +|+|++||++|+.|++.+.+..+
T Consensus       477 lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        477 LPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CCCCcccchhHHHHHHHHHhhhh
Confidence            99999999999999998766543

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4.4e-55  Score=426.52  Aligned_cols=466  Identities=18%  Similarity=0.164  Sum_probs=356.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc--C
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--A   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~   79 (499)
                      +++++.|+|+.-|++||+++.+||...|++.|||+..++++.+.++++++.+++++++++     .+...+.+....  .
T Consensus       130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~-----~k~~~ll~~~~~~~~  204 (691)
T KOG1256|consen  130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNA-----KKAEKLLEIKENDSL  204 (691)
T ss_pred             CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCH-----HHHHHHHhhcccccC
Confidence            568999999999999999999999999999999999999999999999999999999964     222333333332  3


Q ss_pred             C-CceEEecccCCC----CCCCCCcCCCCHHHHhcccCCCCCCCCCCC-CCCCCCCeEEEEecCCCCCCCceEEecchhh
Q 010854           80 P-LKAIVLPAIGND----VGIPLREQDLSWKDFLSSVDYHPRPNYYSP-VYNPVDAVVNILFSSGTTGEPKAIPWTQLSS  153 (499)
Q Consensus        80 ~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~  153 (499)
                      + .+.++.......    ..........+|++++..+..    ....+ ....+||+|.|+|||||||.||||++||+|+
T Consensus       205 ~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~----~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Ni  280 (691)
T KOG1256|consen  205 PSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKK----NQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNI  280 (691)
T ss_pred             ccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhccc----ccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccce
Confidence            3 344444333221    111223447899999998864    22222 4778999999999999999999999999999


Q ss_pred             HHHhhhcce------eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHH
Q 010854          154 IRCTAEGWA------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL  227 (499)
Q Consensus       154 ~~~~~~~~~------~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~  227 (499)
                      ...++....      .......|++++++|+.|++.-+.-...++.|+.+.+..+  ++..+.+.++..+||.+.++|..
T Consensus       281 v~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRV  358 (691)
T KOG1256|consen  281 VSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRV  358 (691)
T ss_pred             eehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhH
Confidence            886543221      1123346999999999999998875556699999999974  56778888999999999999999


Q ss_pred             HHHHHcc-----------------------C---CCCccc-------------------ccceeEEEeecCCCChhhHHH
Q 010854          228 VKAWRNT-----------------------N---CLEGLD-------------------WTKIRSFASTGETSNVDDDLW  262 (499)
Q Consensus       228 l~~l~~~-----------------------~---~~~~~~-------------------l~~l~~i~~~G~~l~~~~~~~  262 (499)
                      |+++-+.                       .   ...+..                   ..++|.+++|++++++++..+
T Consensus       359 l~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F  438 (691)
T KOG1256|consen  359 LERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTF  438 (691)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHH
Confidence            9877443                       0   000000                   246899999999999999999


Q ss_pred             HHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccc
Q 010854          263 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDR  340 (499)
Q Consensus       263 ~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~  340 (499)
                      ++..+ ++.+++.||+||+++..+...+... ..+++|.|+|+++++++| ++......+..  ||||| ++..+.+  +
T Consensus       439 ~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~G--Y  512 (691)
T KOG1256|consen  439 FRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMG--Y  512 (691)
T ss_pred             HHHhc-CceeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhcee--c
Confidence            99775 7999999999999966666655555 789999999999999998 55555555553  99999 7877764  5


Q ss_pred             cccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEeC
Q 010854          341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVS  419 (499)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~  419 (499)
                      +++++.+...+      +.+||+||||+|+|+++|.|.+.||.|+++|. .|++|.|+.||++.. ..+-|...+|.+-+
T Consensus       513 yK~p~~T~e~i------deDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s  585 (691)
T KOG1256|consen  513 YKDPEKTAEAI------DEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDS  585 (691)
T ss_pred             cCChHHHhhhh------ccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCc
Confidence            56666665555      57899999999999999999999999999995 899999999999996 77778888877654


Q ss_pred             CCCCCceEEEEEEEecCCCCC----------CHHH----------HHHHHHHHH-HhhcCCceeeeEEEEcC---CCC--
Q 010854          420 PAGGGPEVLVIFVVLKKGFTS----------QPDK----------LKMIFSKAI-QSKLNPLFKVSLVKVVP---EFP--  473 (499)
Q Consensus       420 ~~~~~~~~~~~~v~~~~~~~~----------~~~~----------l~~~~~~~~-~~~l~~~~~p~~~~~~~---~iP--  473 (499)
                      ..    ..++++|++++....          +-++          +...+.+.. .++|..++....|.+.+   ++.  
T Consensus       586 ~~----~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~Fsieng  661 (691)
T KOG1256|consen  586 LR----SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENG  661 (691)
T ss_pred             ch----hcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCC
Confidence            32    678999998753211          0011          111222211 34677778787777754   222  


Q ss_pred             -CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 -RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 -~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                       +||+-|+.|..+.+.|++++++
T Consensus       662 lltPTlK~KR~~l~~~yk~~Id~  684 (691)
T KOG1256|consen  662 LLTPTLKIKRPQLLKYYKKQIDE  684 (691)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHH
Confidence             5999999999999999999986

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.9e-55  Score=435.99  Aligned_cols=450  Identities=21%  Similarity=0.193  Sum_probs=336.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|++.|+++|+++.+||+.+|++.||+++..+++++.++|+++++++++++...+     .+.........+.
T Consensus        67 ~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~  141 (613)
T COG1022          67 IPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPK  141 (613)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccc
Confidence            34599999999999999999999999999999999999999999999999999999998532     1111212221111


Q ss_pred             ceEEecccC---C-------CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecch
Q 010854           82 KAIVLPAIG---N-------DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL  151 (499)
Q Consensus        82 ~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~  151 (499)
                      .........   .       ........+...+ . .....     .........+||+|.|+|||||||.||||++||+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~  214 (613)
T COG1022         142 VVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-L-IDSAG-----LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR  214 (613)
T ss_pred             hhhhhhhhhhhhhccchhhccccccccccchhh-h-hcccc-----cccccCCCCccceEEEEEcCCCCCCCceEEEehH
Confidence            000000000   0       0000000111111 0 11110     1111245778999999999999999999999999


Q ss_pred             hhHHHhhhcceecc-CcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHH
Q 010854          152 SSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       152 ~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      |+++++......+. .+++|++++++|+.|++.... ....++.|+++...   .+++.++..++.++||++.++|..|+
T Consensus       215 N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~---~~~~~~~~dl~~~rPt~m~~VPRvwE  291 (613)
T COG1022         215 NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK---EDPRTLLEDLKEVRPTVMIGVPRVWE  291 (613)
T ss_pred             HHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec---CCHHHHHHHHHHhCCeEEeechHHHH
Confidence            99999999999986 999999999999999999876 55555555555554   36789999999999999999999998


Q ss_pred             HHHcc--------CCC-----------------------C----------------cccc-cceeEEEeecCCCChhhHH
Q 010854          230 AWRNT--------NCL-----------------------E----------------GLDW-TKIRSFASTGETSNVDDDL  261 (499)
Q Consensus       230 ~l~~~--------~~~-----------------------~----------------~~~l-~~l~~i~~~G~~l~~~~~~  261 (499)
                      .+.+.        ...                       .                ...+ .++|.+++||+++++++..
T Consensus       292 ~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~  371 (613)
T COG1022         292 KVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLH  371 (613)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHH
Confidence            76443        000                       0                0011 4899999999999999999


Q ss_pred             HHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccc
Q 010854          262 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDR  340 (499)
Q Consensus       262 ~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~  340 (499)
                      +++..  ++++++.||+||+++..+.+++. ....+++|.|+|+++++|.|+            |||+| ++..+.+  +
T Consensus       372 f~~~l--Gi~i~eGYGlTEts~~~~v~~~~-~~~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~G--Y  434 (613)
T COG1022         372 FFRSL--GIPILEGYGLTETSAVVSVNPPD-RFVLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKG--Y  434 (613)
T ss_pred             HHHHc--CCCeEEEecccccccceEEcccc-CcccCCcCCcCCCceEEEccC------------ceEEEecchhcch--h
Confidence            99865  79999999999999887776654 446689999999999999993            99999 8888875  5


Q ss_pred             cccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeee-eCceeechHHHHHHHhhcCccceeeeEEEeC
Q 010854          341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILETAAISVS  419 (499)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~-~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~  419 (499)
                      +++++.+...|      +.+|||+|||+|.+|++|+|.++||.||+|+ .+|++|.|+.||+.+. .+|.|..++|++ +
T Consensus       435 yk~pe~Taeaf------~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~-~~~~I~qi~vvg-~  506 (613)
T COG1022         435 YKNPEATAEAF------TEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA-KSPLIEQICVVG-D  506 (613)
T ss_pred             cCChHHHhhhc------cccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHh-cCCCeeEEEEEe-c
Confidence            66677666666      4589999999999999999999999999999 5999999999999995 999999999998 3


Q ss_pred             CCCCCceEEEEEEEecCCCC------------CCH------HHHHHHHHHHH---HhhcCCceeeeEEEEcC-CCC----
Q 010854          420 PAGGGPEVLVIFVVLKKGFT------------SQP------DKLKMIFSKAI---QSKLNPLFKVSLVKVVP-EFP----  473 (499)
Q Consensus       420 ~~~~~~~~~~~~v~~~~~~~------------~~~------~~l~~~~~~~~---~~~l~~~~~p~~~~~~~-~iP----  473 (499)
                      +.    ..+.|.|++..+.-            .+.      .++.+.+...+   +..+..+..+..+.+.+ ++.    
T Consensus       507 ~k----~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~  582 (613)
T COG1022         507 DK----KFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENG  582 (613)
T ss_pred             CC----cceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccC
Confidence            22    67888888875211            112      22333333333   33445556666666653 333    


Q ss_pred             -CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 -RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 -~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                       .|++-|+.|..+.+.++++++.
T Consensus       583 ~~t~t~klkR~~i~~~~~~~i~~  605 (613)
T COG1022         583 ELTPTLKLKRHVILDRYKDEIEA  605 (613)
T ss_pred             ccccchhhhHHHHHHhhhhHHHH
Confidence             5899999999999999887764

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-54  Score=443.86  Aligned_cols=464  Identities=21%  Similarity=0.231  Sum_probs=352.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+++++...      ..+..+......
T Consensus        71 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  144 (560)
T PRK08974         71 LKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPV  144 (560)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCc
Confidence            67899999999999999999999999999999999999999999999999999999976432      111221111111


Q ss_pred             ceEEecccCCCCC-------------------CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 010854           82 KAIVLPAIGNDVG-------------------IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE  142 (499)
Q Consensus        82 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  142 (499)
                      ..++.........                   ....+...++.+.......    ..........+++++++|||||||.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~  220 (560)
T PRK08974        145 KHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGV  220 (560)
T ss_pred             ceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCC
Confidence            1111110000000                   0000111222222222111    1111223467899999999999999


Q ss_pred             CceEEecchhhHHHhhhcceec---cCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCC
Q 010854          143 PKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGV  218 (499)
Q Consensus       143 pk~v~~s~~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~  218 (499)
                      ||+|.++|.++..++......+   ....++.++..+|++|.+++.. ++.++..|+++++.....+...+++.++++++
T Consensus       221 PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~  300 (560)
T PRK08974        221 AKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPF  300 (560)
T ss_pred             CcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCc
Confidence            9999999999887654432222   2345667888999999988754 77788899998877655567889999999999


Q ss_pred             eEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccc
Q 010854          219 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA  298 (499)
Q Consensus       219 t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~  298 (499)
                      |.+.++|++++.|.........+++++|.++++|+++++.+...++..+ +..+++.||+||++..+..+........++
T Consensus       301 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  379 (560)
T PRK08974        301 TAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGS  379 (560)
T ss_pred             ceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCc
Confidence            9999999999999887655566678999999999999999888887654 788999999999987666554444445678


Q ss_pred             ccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceE
Q 010854          299 FSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  377 (499)
Q Consensus       299 ~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l  377 (499)
                      +|.|+|++.++|+|+++++++.|+  +|||++ ++....+  ++.+++.+...+       .++||+|||+++++++|++
T Consensus       380 ~G~~~~~~~~~i~~~~~~~~~~g~--~Gel~v~g~~~~~g--y~~~~~~~~~~~-------~~g~~~TGDl~~~~~~g~l  448 (560)
T PRK08974        380 IGLPVPSTEIKLVDDDGNEVPPGE--PGELWVKGPQVMLG--YWQRPEATDEVI-------KDGWLATGDIAVMDEEGFL  448 (560)
T ss_pred             cccCcCCCEEEEECCCCCCCCCCC--ceEEEEecCCcchh--hcCChhhhhhhh-------hcCCcccCCEEEEcCCceE
Confidence            999999999999999999999998  599999 4443332  222222222222       2479999999999999999


Q ss_pred             EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc
Q 010854          378 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       378 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  457 (499)
                      ++.||.+|+++++|.+++|.+||+++. .+++|.+++|++.+++..+ +.++++++... ...+.+++.+    ++.+.|
T Consensus       449 ~i~GR~~d~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~-~~~~~~~l~~----~l~~~l  521 (560)
T PRK08974        449 RIVDRKKDMILVSGFNVYPNEIEDVVM-LHPKVLEVAAVGVPSEVSG-EAVKIFVVKKD-PSLTEEELIT----HCRRHL  521 (560)
T ss_pred             EEEecccceEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeeecCCcc-eEEEEEEECCC-CCCCHHHHHH----HHHhhc
Confidence            999999999999999999999999996 8999999999999988777 77777776543 2334444444    456688


Q ss_pred             CCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          458 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       458 ~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      +.|+.|..++++++||+|++||++|+.|++.+..+..
T Consensus       522 ~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        522 TGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             ccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhhc
Confidence            8999999999999999999999999999998877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.1e-54  Score=483.09  Aligned_cols=458  Identities=16%  Similarity=0.143  Sum_probs=350.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+|+..+++++.+++++++++.+|+++.......    .....+..+.
T Consensus       679 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~  754 (1140)
T PRK06814        679 TPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR----LGPLIEALEF  754 (1140)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc----chhHHHHhcc
Confidence            689999999999999999999999999999999999999999999999999999999875432111    0111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++..++..      .....++.+...... ..+. .......++|+++++|||||||.||+|+++|+++........
T Consensus       755 ~~~~i~~~~~~------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~  826 (1140)
T PRK06814        755 GIRIIYLEDVR------AQIGLADKIKGLLAG-RFPL-VYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVA  826 (1140)
T ss_pred             CceEEEehHhh------ccCChHHHHHHHhhc-cCCc-cccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHH
Confidence            11111111100      001111111110000 0000 001134679999999999999999999999999998888877


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++|++++.+|++|.+++.. ++.++..|+++++.+.....+.+.+.++++++|++.++|++++.+.+..  ...
T Consensus       827 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~  904 (1140)
T PRK06814        827 ARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPY  904 (1140)
T ss_pred             HhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccc
Confidence            7888999999999999999999854 8889999999999875556677889999999999999999999987753  345


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      +++++|.+++||+++++++.+.+.+.+ +.++++.||+||++........ .....+++|+|.|++++++.+..+    .
T Consensus       905 ~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~  978 (1140)
T PRK06814        905 DFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----I  978 (1140)
T ss_pred             cccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----C
Confidence            678999999999999999998888776 7889999999999876544332 234567899999999999987543    2


Q ss_pred             CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854          321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI  399 (499)
Q Consensus       321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i  399 (499)
                      ++  .||+++ ++..+.++.  .+.+ .. .+    ....++||+|||++++|+||++++.||.||+||++|++|+|.||
T Consensus       979 ~~--~Gel~v~g~~~~~gY~--~~~~-~~-~~----~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eI 1048 (1140)
T PRK06814        979 DE--GGRLFVRGPNVMLGYL--RAEN-PG-VL----EPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAV 1048 (1140)
T ss_pred             CC--ceEEEEeCCCcchhhc--CCCC-CC-cc----ccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHH
Confidence            44  499999 555443321  1110 00 01    01246899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      |+++. .|+.+.+++|++++++..+ +.+++++..   ...+.+++.+++++   ..++.|+.|..+++++++|+|++||
T Consensus      1049 E~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~~~~---~~~~~~~l~~~~~~---~~l~~~~~P~~i~~v~~lP~t~~GK 1120 (1140)
T PRK06814       1049 EELAA-ELWPDALHAAVSIPDARKG-ERIILLTTA---SDATRAAFLAHAKA---AGASELMVPAEIITIDEIPLLGTGK 1120 (1140)
T ss_pred             HHHHH-hcCCcccEEEEEcccCCCC-ceEEEEEcC---CCcCHHHHHHHHHH---cCCCcccCCcEEEEecCcCCCCCCC
Confidence            99996 8999999999999988887 777766542   23345555555432   3599999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc
Q 010854          480 LLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       480 v~r~~l~~~~~~~~~~~~  497 (499)
                      ++|++|++++.+....+.
T Consensus      1121 i~r~~L~~~~~~~~~~~~ 1138 (1140)
T PRK06814       1121 IDYVAVTKLAEEAAAKPE 1138 (1140)
T ss_pred             CcHHHHHHHHHHhhcccc
Confidence            999999999988776553

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-55  Score=459.02  Aligned_cols=465  Identities=15%  Similarity=0.148  Sum_probs=333.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc--C
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--A   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~   79 (499)
                      +++||+|+|+++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++....      ..+......  .
T Consensus       143 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~  216 (700)
T PTZ00216        143 LTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGM  216 (700)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccC
Confidence            68999999999999999999999999999999999999999999999999999999987432      111111111  1


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      +...++.................+|+++...+... ...........++|+++++|||||||.||||+++|+++.+.+..
T Consensus       217 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~  295 (700)
T PTZ00216        217 PNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSA-GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILA  295 (700)
T ss_pred             CceEEEEECCCccccccCCceEEEHHHHHHhCCcc-ccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHH
Confidence            11222221110000001122345778777654210 01111123346899999999999999999999999999887766


Q ss_pred             cceec-----cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHH-------HHHHhCCeEEecchHH
Q 010854          160 GWAHI-----DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSL  227 (499)
Q Consensus       160 ~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~P~~  227 (499)
                      ....+     .+.++|++++++|++|.++.......+..|+.+++.+    +..+.+       .+++++||++.++|.+
T Consensus       296 ~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~  371 (700)
T PTZ00216        296 LEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRI  371 (700)
T ss_pred             HHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHH
Confidence            54332     2467899999999999998766555677888776632    333333       6899999999999999


Q ss_pred             HHHHHccCCC-------------------------Ccc----------------cccceeEEEeecCCCChhhHHHHHhh
Q 010854          228 VKAWRNTNCL-------------------------EGL----------------DWTKIRSFASTGETSNVDDDLWLSSK  266 (499)
Q Consensus       228 l~~l~~~~~~-------------------------~~~----------------~l~~l~~i~~~G~~l~~~~~~~~~~~  266 (499)
                      ++.+.+....                         .+.                ..+++|.+++||+++++++.++++..
T Consensus       372 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~  451 (700)
T PTZ00216        372 FDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVV  451 (700)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            9887642100                         000                01579999999999999998887765


Q ss_pred             cccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCC--CCCCCCCcceeeEe-ccccccccccccc
Q 010854          267 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV--PYPDDQPCVGEVGL-FPLYLGASDRLLN  343 (499)
Q Consensus       267 ~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~--~~~~g~~~~Gei~v-~~~~~~~~~~~~~  343 (499)
                      + + .+++.||+||+++....... .....+++|.|+|+++++|+|+.+.  ..+++.  .|||+| ++..+.+  ++.+
T Consensus       452 ~-~-~l~~~YG~TEt~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~--~GEL~vrG~~v~~G--Y~~~  524 (700)
T PTZ00216        452 F-G-MVIQGWGLTETVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP--RGEILLRGPFLFKG--YYKQ  524 (700)
T ss_pred             h-h-hHhhccCcccccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCC--CceEEEcCCcccch--hcCC
Confidence            5 5 89999999999765443332 2335689999999999999996542  233344  499999 6665543  3444


Q ss_pred             ccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeee-eCceeechHHHHHHHhhcCccceee--eEEEeCC
Q 010854          344 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILET--AAISVSP  420 (499)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~-~~G~~v~~~~iE~~l~~~~~~v~~~--~v~~~~~  420 (499)
                      ++.+...|      ..++||+|||+|++|+||+|+++||.||+|| ++|++|+|.+||+++. .||.|.++  +|+..++
T Consensus       525 pe~T~~~f------~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~~~~~  597 (700)
T PTZ00216        525 EELTREVL------DEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVLVHPA  597 (700)
T ss_pred             hhHhhhhc------cccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEEEecC
Confidence            55444444      2357999999999999999999999999999 8999999999999996 99999873  4444332


Q ss_pred             CCCCceEEEEEEEecCCC----------CC------CHHHHHHHHHHHH-----HhhcCCceeeeEEEEcCC-C-----C
Q 010854          421 AGGGPEVLVIFVVLKKGF----------TS------QPDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPE-F-----P  473 (499)
Q Consensus       421 ~~~~~~~~~~~v~~~~~~----------~~------~~~~l~~~~~~~~-----~~~l~~~~~p~~~~~~~~-i-----P  473 (499)
                         . ..++++|++....          ..      +..++.+.+.+.+     +.++..|..+++|+++++ +     -
T Consensus       598 ---~-~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~  673 (700)
T PTZ00216        598 ---R-SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGV  673 (700)
T ss_pred             ---C-ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCC
Confidence               2 6788888875311          00      1122333333333     347889999999988753 2     3


Q ss_pred             CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      +|+++|+.|+.+++.|++++++
T Consensus       674 lT~t~K~~R~~i~~~y~~~i~~  695 (700)
T PTZ00216        674 LTAAMKLKRRVIDERYADLIKE  695 (700)
T ss_pred             CChhhccchHHHHHHHHHHHHH
Confidence            6999999999999999998875

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=4.9e-54  Score=443.56  Aligned_cols=472  Identities=21%  Similarity=0.246  Sum_probs=349.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc---
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++.+|+++...      +........   
T Consensus        67 ~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~  140 (567)
T PLN02479         67 IGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF------TLAEEALKILAE  140 (567)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhh------hHHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999987532      111111110   


Q ss_pred             ------CCCceEEecccC-C--CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEec
Q 010854           79 ------APLKAIVLPAIG-N--DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT  149 (499)
Q Consensus        79 ------~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s  149 (499)
                            .....+++.... .  ........+...+.+++.....  .  .........++.++++|||||||.||+|.++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~s  216 (567)
T PLN02479        141 KKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDP--E--FAWKPPADEWQSIALGYTSGTTASPKGVVLH  216 (567)
T ss_pred             cccccCCCceEEEecCCcCCccccccccccCcccHHHHHhcccc--c--cccCCCCCcccceEEEECCCCCCCCcEEEec
Confidence                  111222222110 0  0000112234456666553221  0  0111122345677899999999999999999


Q ss_pred             chhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhh-hhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHH
Q 010854          150 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILF-SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV  228 (499)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~-~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l  228 (499)
                      |+++..........++++.++++++.+|++|.+++...+ ..++.|.++++ . .++++.+++.++++++|++.++|+++
T Consensus       217 h~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~  294 (567)
T PLN02479        217 HRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVL  294 (567)
T ss_pred             cHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHH
Confidence            999876655555566788899999999999999976644 34555555444 3 46789999999999999999999999


Q ss_pred             HHHHccCCCCc-ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----------CCCccc
Q 010854          229 KAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----------QPQAFG  297 (499)
Q Consensus       229 ~~l~~~~~~~~-~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----------~~~~~~  297 (499)
                      ..|.+...... .++++++.++++|+.+++.+.+.+...  +.++++.||+||+++.+......          ......
T Consensus       295 ~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (567)
T PLN02479        295 NTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNA  372 (567)
T ss_pred             HHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCccccccccc
Confidence            99987654333 256889999999999999988887654  68899999999986433221100          001123


Q ss_pred             cccccCCCce-EEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecC
Q 010854          298 AFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG  374 (499)
Q Consensus       298 ~~g~~~~~~~-~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  374 (499)
                      ..|.+.+++. ++|+| +++.+++.+...+|||++ ++..+.+  ++.+++.+...|       .++||+|||+++++++
T Consensus       373 ~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~G--Y~~~~~~t~~~~-------~~g~~~TGDl~~~~~~  443 (567)
T PLN02479        373 RQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKG--YLKNPKANEEAF-------ANGWFHSGDLGVKHPD  443 (567)
T ss_pred             ccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhh--hhcCcccccchh-------cCCceecceeEEEcCC
Confidence            5677888875 88998 678888764212699999 5443322  233333333333       2469999999999999


Q ss_pred             ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC-HHHHHHHHHHHH
Q 010854          375 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAI  453 (499)
Q Consensus       375 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~~  453 (499)
                      |++++.||.+|+|+++|++|+|.+||.+|. .||.|.+++|++.++...+ +.+++++++..+...+ .+.+.+.+.+++
T Consensus       444 g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~l~~~~  521 (567)
T PLN02479        444 GYIEIKDRSKDIIISGGENISSLEVENVVY-THPAVLEASVVARPDERWG-ESPCAFVTLKPGVDKSDEAALAEDIMKFC  521 (567)
T ss_pred             ccEEEeccccceEEeCCEEEcHHHHHHHHH-hCcccceeeEEeccchhcC-ceeEEEEEecCcccccchhhhHHHHHHHH
Confidence            999999999999999999999999999996 8999999999999887776 8899999987654322 234455677778


Q ss_pred             HhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHh-hhhhccCC
Q 010854          454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH-ELSVRSRI  499 (499)
Q Consensus       454 ~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~-~~~~~~~~  499 (499)
                      +++|+.|+.|..+++ ++||+|++||++|+.|++.+.. +...+|||
T Consensus       522 ~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~~~~~~~~~  567 (567)
T PLN02479        522 RERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEMGPVKKSRL  567 (567)
T ss_pred             HhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhhCCcccccC
Confidence            889999999988776 6799999999999999888776 77777776

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.3e-55  Score=528.83  Aligned_cols=449  Identities=17%  Similarity=0.189  Sum_probs=364.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC--
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--   79 (499)
                      +++|++|++++++++++++++||++++|++++|++|.++.+.+.+++++++++++|++..+..      .........  
T Consensus      3767 v~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~------~~~~~~~~~~~ 3840 (4334)
T PRK05691       3767 VGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACRE------QARALLDELGC 3840 (4334)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccc------hhhhhhccccc
Confidence            789999999999999999999999999999999999999999999999999999999885421      111111100  


Q ss_pred             -CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           80 -PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                       .....++                 +++.....    ...........++++|+++|||||||.||||+++|+++.+.+.
T Consensus      3841 ~~~~~~~~-----------------~~~~~~~~----~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~ 3899 (4334)
T PRK05691       3841 ANRPRLLV-----------------WEEVQAGE----VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQL 3899 (4334)
T ss_pred             ccccceee-----------------eccccccc----ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHH
Confidence             0000100                 01110100    0111122345679999999999999999999999999999999


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCC--ChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      +....++++++|+++...+++|..+.+.++.+++.|+++++++...  ++..+.+.++++++|++.++|+++..++... 
T Consensus      3900 ~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~- 3978 (4334)
T PRK05691       3900 SKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED- 3978 (4334)
T ss_pred             HHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc-
Confidence            8888899999999999999999999999999999999999987533  5778999999999999999999999887543 


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCCceEEEECC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDE  313 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~  313 (499)
                        ...+++||.+++|||++++++.+.+.+..+++++++.||+||++..+......   ......++|.|++++.++|+|+
T Consensus      3979 --~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~ 4056 (4334)
T PRK05691       3979 --RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDE 4056 (4334)
T ss_pred             --cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECC
Confidence              23467899999999999999999888888889999999999998755433222   1223457999999999999999


Q ss_pred             CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCC-CCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854          314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG  391 (499)
Q Consensus       314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G  391 (499)
                      .++++|.|.  +|||+| ++....+  ++.+++.+...|...|. ..+++||||||++++++||+|+++||.|++||++|
T Consensus      4057 ~~~~~p~g~--~GEL~i~G~~v~~G--Y~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G 4132 (4334)
T PRK05691       4057 ALELVPLGA--VGELCVAGTGVGRG--YVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRG 4132 (4334)
T ss_pred             CCCCCCCCC--ceEEEEeccccccc--ccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEece
Confidence            999999998  599999 5555443  44556666666655554 35789999999999999999999999999999999


Q ss_pred             eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCC
Q 010854          392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE  471 (499)
Q Consensus       392 ~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~  471 (499)
                      ++|.+.|||++|. .+|+|.+++|+...+ ..+ +.++++++...+.. ...+..+.++++++++|+.|+.|..++++++
T Consensus      4133 ~riel~eIE~~l~-~~~~v~~a~v~~~~~-~~~-~~l~a~~~~~~~~~-~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~ 4208 (4334)
T PRK05691       4133 YRIELGEIEARLH-EQAEVREAAVAVQEG-VNG-KHLVGYLVPHQTVL-AQGALLERIKQRLRAELPDYMVPLHWLWLDR 4208 (4334)
T ss_pred             EEecHHHHHHHHH-hCCCccEEEEEEecC-CCC-cEEEEEEeCCcccc-cchHHHHHHHHHHHhhCChhhcCcceeeccc
Confidence            9999999999996 999999988765543 344 78999998765433 3334556788888899999999999999999


Q ss_pred             CCCCCCcHHHHHHHHHH
Q 010854          472 FPRTASNKLLRRVLRDQ  488 (499)
Q Consensus       472 iP~t~~GKv~r~~l~~~  488 (499)
                      ||+|++|||||++|++.
T Consensus      4209 lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4209 LPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             CCCCCCCcccHhhcCCC
Confidence            99999999999999865

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-53  Score=436.57  Aligned_cols=457  Identities=19%  Similarity=0.143  Sum_probs=350.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+.+.+++++++++.++++....      ............
T Consensus        46 ~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~  119 (511)
T PRK13391         46 LKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPG  119 (511)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999987532      111112121111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEec--chhhHH---H
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIR---C  156 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s--~~~~~~---~  156 (499)
                      ....+......    .......+.+.......        ....+.++.++++|||||||.||+|.++  |.+...   .
T Consensus       120 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~  187 (511)
T PRK13391        120 VRHRLVLDGDG----ELEGFVGYAEAVAGLPA--------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPL  187 (511)
T ss_pred             ceEEEEecCCC----CCcccccHHHHhcCCCC--------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHH
Confidence            11111111100    01122233433321111        0112345678999999999999999965  544322   2


Q ss_pred             hhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          157 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      .......+++..+++++...|++|.+++...+.++..|+++++.+ ..+++.+++.++++++|++.++|+++..+.+...
T Consensus       188 ~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  266 (511)
T PRK13391        188 TAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPE  266 (511)
T ss_pred             HHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCch
Confidence            233344566788999999999999998887888999999999986 5678999999999999999999999998876543


Q ss_pred             --CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCC
Q 010854          237 --LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC  314 (499)
Q Consensus       237 --~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~  314 (499)
                        ....++++++.++++|+++++++.+.+.+.+ +..+++.||+||++.+............+++|.|.++ .++++|++
T Consensus       267 ~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~  344 (511)
T PRK13391        267 EVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDD  344 (511)
T ss_pred             hhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCC
Confidence              2244678999999999999999999888765 6789999999999875543333233456789999999 69999999


Q ss_pred             CCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          315 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       315 g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      |.+++.|+  .|||++....+-  .++.+++.+...+.     .+++||+|||+|+++++|++++.||.+|+++++|.+|
T Consensus       345 ~~~~~~g~--~Gel~~~g~~~~--gy~~~~~~~~~~~~-----~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v  415 (511)
T PRK13391        345 GAELPPGE--PGTIWFEGGRPF--EYLNDPAKTAEARH-----PDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNI  415 (511)
T ss_pred             CCCCCCCC--ceEEEEecCcce--EEcCChhHhHHhhc-----cCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEE
Confidence            99999998  499999333332  23333333332221     1248999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||+++. .||.|.+++|++.+++..+ +.+++++++..+...+ +++.+.+++++++.|+.|+.|..+.+++++|+
T Consensus       416 ~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~  492 (511)
T PRK13391        416 YPQEAENLLI-THPKVADAAVFGVPNEDLG-EEVKAVVQPVDGVDPG-PALAAELIAFCRQRLSRQKCPRSIDFEDELPR  492 (511)
T ss_pred             CHHHHHHHHH-hCCCcceEEEEecCCcccC-ceeEEEEEECCCCCcc-cchHHHHHHHHHhhcccCcCCcEEEEeecCCC
Confidence            9999999997 8999999999999888777 7888888877643322 33455677778889999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHh
Q 010854          475 TASNKLLRRVLRDQIKH  491 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~  491 (499)
                      |++||++|+.|++.+.+
T Consensus       493 t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        493 LPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             CCccceeHHHHHHHhhc
Confidence            99999999999998765

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.4e-53  Score=438.28  Aligned_cols=457  Identities=22%  Similarity=0.197  Sum_probs=346.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc-CC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-AP   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~   80 (499)
                      +++||+|+++++|+++++++++||+++|++++|++|..+.+++.+++++++++.+|+++..    .......+.... ..
T Consensus        68 i~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~  143 (541)
T TIGR03205        68 YGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLA----ALLPMALKFLEKGLL  143 (541)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCch----hhhHHHHHhhhcccc
Confidence            6799999999999999999999999999999999999999999999999999999987531    000111111111 11


Q ss_pred             CceEEecccCC-CC-----CCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           81 LKAIVLPAIGN-DV-----GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        81 ~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      ...++...... ..     .........++++++.....     ........++++++++|||||||.||+|+++|+++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~  218 (541)
T TIGR03205       144 DRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT  218 (541)
T ss_pred             eEEEEecccccccccccccccCCCcccccHHHHHhcCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHH
Confidence            11222211100 00     00112234556666543211     111123457899999999999999999999999987


Q ss_pred             HHhhhcce-----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHH
Q 010854          155 RCTAEGWA-----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV  228 (499)
Q Consensus       155 ~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l  228 (499)
                      ........     .......+++++.+|++|.+++.. ++.++..|+++++.. ..+++.+++.|+++++|++.++|+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~  297 (541)
T TIGR03205       219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMW  297 (541)
T ss_pred             HHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHH
Confidence            65432111     112234578899999999988766 788899999888775 56789999999999999999999999


Q ss_pred             HHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceE
Q 010854          229 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL  308 (499)
Q Consensus       229 ~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~  308 (499)
                      ..+.+.......++++++.++.+|+++++++.+++...+ +..+++.||+||++..............+++|.|++++.+
T Consensus       298 ~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~  376 (541)
T TIGR03205       298 IALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIEL  376 (541)
T ss_pred             HHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCcee
Confidence            999876544455678999999999999999988887655 6889999999999876655444334456789999999998


Q ss_pred             EEE--CCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCC
Q 010854          309 VIL--DECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD  385 (499)
Q Consensus       309 ~i~--d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d  385 (499)
                      +++  |+.+++++.|+  .|||++ ++..+.+  ++.++..+...|.       .+||+|||+++++++|++++.||.+|
T Consensus       377 ~v~~~d~~~~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~l~i~GR~~~  445 (541)
T TIGR03205       377 DVVSLDDPTKVLPPGE--VGELRIRGPNVTRG--YWNRPEESAEAFV-------GDRFLTGDIGYMDTDGYFFLVDRKKD  445 (541)
T ss_pred             EEEecCCCCccCCCCC--eeEEEEecCCcccc--ccCChhhhHhhhc-------cCCcccCceEEEcCCceEEEEccccC
Confidence            875  57888999888  599999 4443332  2222222222221       35789999999999999999999999


Q ss_pred             eeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCceeee
Q 010854          386 TMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVS  464 (499)
Q Consensus       386 ~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~p~  464 (499)
                      ++|++|++|+|.+||+++. .+++|.+++|++++++..+ +.+++++++.++.. .+.++    ++++++++|+.|+.|.
T Consensus       446 ~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----l~~~~~~~l~~~~~P~  519 (541)
T TIGR03205       446 MIISGGFNVYPQMIEQAIY-EHPGVQEVIVIGIPDQYRG-EAAKAFVKLRPGAKPFSLDE----LRAFLAGKLGKHELPV  519 (541)
T ss_pred             eEEECCEEECHHHHHHHHH-hCCCeeeEEEEecCCcccC-ceEEEEEEECCCCCcCCHHH----HHHHHHhhcccccCCc
Confidence            9999999999999999997 8999999999999987777 88899998876532 34444    4445667899999999


Q ss_pred             EEEEcCCCCCCCCcHHHHHHHH
Q 010854          465 LVKVVPEFPRTASNKLLRRVLR  486 (499)
Q Consensus       465 ~~~~~~~iP~t~~GKv~r~~l~  486 (499)
                      +++++++||+|++||++|++|+
T Consensus       520 ~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       520 AVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             EEEEeccCCCCcccceeHhhcC
Confidence            9999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-54  Score=425.17  Aligned_cols=378  Identities=15%  Similarity=0.142  Sum_probs=319.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++|++|+++++|++++++++||++++|++++|+++..+.+.+..++++++++.+++++...      .           
T Consensus        29 ~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-----------   91 (414)
T PRK08308         29 EAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGESDF------T-----------   91 (414)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecCccc------c-----------
Confidence            57899999999999999999999999999999999999999999999999999999865210      0           


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                          .             .        .            .....++++++++|||||||.||+|.++|+++...+....
T Consensus        92 ----~-------------~--------~------------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~  134 (414)
T PRK08308         92 ----K-------------L--------E------------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYN  134 (414)
T ss_pred             ----c-------------c--------c------------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHH
Confidence                0             0        0            0012457899999999999999999999999998888777


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..+.+..+|+++..+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+.....  
T Consensus       135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--  211 (414)
T PRK08308        135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGT--  211 (414)
T ss_pred             HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCcc--
Confidence            7788889999999999999999865 889999999999886 467889999999999999999999999998764321  


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                        .+++.++++|+.+++++...++..  ..++++.||+||++.......   .....++|+|+|++++++.++.      
T Consensus       212 --~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~~~------  278 (414)
T PRK08308        212 --FQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGSDE------  278 (414)
T ss_pred             --ccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEecCC------
Confidence              368889999999999998888765  468999999999986443221   2245689999999999998643      


Q ss_pred             CCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHH
Q 010854          321 DQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE  400 (499)
Q Consensus       321 g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE  400 (499)
                      ++  .||+++..                          +++||+|||+++++++|++++.||.+|++|++|++|+|.+||
T Consensus       279 ~~--~gel~v~~--------------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE  330 (414)
T PRK08308        279 NA--PEEIVVKM--------------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVE  330 (414)
T ss_pred             CC--CceEEEEc--------------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHH
Confidence            33  39998731                          235899999999999999999999999999999999999999


Q ss_pred             HHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHH
Q 010854          401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL  480 (499)
Q Consensus       401 ~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv  480 (499)
                      +++. .+|+|.+++|++.+++..+ +.++++++...  ..+.+++.++    ++++|+.|+.|..++++++||+|++||+
T Consensus       331 ~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~--~~~~~~l~~~----l~~~l~~~~~P~~i~~v~~iP~t~~GKi  402 (414)
T PRK08308        331 DVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE--EIDPVQLREW----CIQHLAPYQVPHEIESVTEIPKNANGKV  402 (414)
T ss_pred             HHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC--CCCHHHHHHH----HHHhCccccCCcEEEEeccCCCCCCcCe
Confidence            9996 8999999999999988777 88888888654  3455555544    5678899999999999999999999999


Q ss_pred             HHHHH
Q 010854          481 LRRVL  485 (499)
Q Consensus       481 ~r~~l  485 (499)
                      +|+.|
T Consensus       403 ~r~~~  407 (414)
T PRK08308        403 SRKLL  407 (414)
T ss_pred             ehhhh
Confidence            99954

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2e-54  Score=523.80  Aligned_cols=443  Identities=20%  Similarity=0.189  Sum_probs=359.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|++++++++++++++||++++|++++|++|.++.+++.+++++++++++|+++......          .....
T Consensus      1178 v~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~----------~~~~~ 1247 (4334)
T PRK05691       1178 VGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERL----------PQAEG 1247 (4334)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhc----------ccccC
Confidence            68999999999999999999999999999999999999999999999999999999987532110          00000


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      . ..+..                +++....    ...........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus      1248 ~-~~~~~----------------~~~~~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 1306 (4334)
T PRK05691       1248 V-SAIAL----------------DSLHLDS----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQ 1306 (4334)
T ss_pred             c-eEEee----------------ccccccc----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHH
Confidence            0 00100                0000000    0001111234578999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC--CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++.++|+++...|++|..++..++.+++.|+++++.+.  ..++..+++.++++++|++.++|++++.|.+...  .
T Consensus      1307 ~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~ 1384 (4334)
T PRK05691       1307 ATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--A 1384 (4334)
T ss_pred             HhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--c
Confidence            88899999999999999999999889999999999999864  3467899999999999999999999999986533  2


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC-CCCCccccccccCCCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~d~~g~~~  318 (499)
                      .+++++|.+++|||++++++.+.+...+++..+++.||+||++..+..... .......++|+|++++.++|+|+.++++
T Consensus      1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~v 1464 (4334)
T PRK05691       1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLL 1464 (4334)
T ss_pred             ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCC
Confidence            357899999999999999999999888878899999999999865543221 2223456899999999999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCC-CCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      +.|.  +|||+| ++....+  ++.+++.+...|...|.. .+.+||+|||+|++++||+++++||.|++||++|++|+|
T Consensus      1465 p~G~--~GEL~i~G~~v~~G--Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~ 1540 (4334)
T PRK05691       1465 PPGV--AGELCIGGAGLARG--YLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEP 1540 (4334)
T ss_pred             CCCC--ceEEEecCcccchh--hcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCH
Confidence            9998  599999 5554443  344555566566554443 367899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .|||++|. .+|+|.+++|+...+. .+ ..++++++...+...+.++    +++.+.++|+.|++|..++++++||+|+
T Consensus      1541 ~eIE~~l~-~~~~V~~a~v~~~~~~-~~-~~lva~~~~~~~~~~~~~~----l~~~l~~~Lp~y~vP~~~~~~~~lP~t~ 1613 (4334)
T PRK05691       1541 EEIQARLL-AQPGVAQAAVLVREGA-AG-AQLVGYYTGEAGQEAEAER----LKAALAAELPEYMVPAQLIRLDQMPLGP 1613 (4334)
T ss_pred             HHHHHHHH-hCCCcceEEEEEeeCC-CC-CEEEEEEEeCCCCCCCHHH----HHHHHHHhCccccCCcEEEEccccCCCC
Confidence            99999997 8999999999866544 44 7889999877655445444    4445667999999999999999999999


Q ss_pred             CcHHHHHHHHHH
Q 010854          477 SNKLLRRVLRDQ  488 (499)
Q Consensus       477 ~GKv~r~~l~~~  488 (499)
                      +||++|++|++.
T Consensus      1614 ~GKidr~~L~~~ 1625 (4334)
T PRK05691       1614 SGKLDRRALPEP 1625 (4334)
T ss_pred             CCCcChhhcCcc
Confidence            999999999754

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-53  Score=428.91  Aligned_cols=407  Identities=17%  Similarity=0.163  Sum_probs=328.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+++++..++++++++.++++.....       ...    .. 
T Consensus        50 ~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~----~~-  117 (458)
T PRK09029         50 VVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-------FSA----LT-  117 (458)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-------hhh----cc-
Confidence            678999999999999999999999999999999999999999999999999999998764210       000    00 


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                .         ..+.     ..     ....+....++++++++|||||||.||+|.++|+++...+....
T Consensus       118 ----------~---------~~~~-----~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  168 (458)
T PRK09029        118 ----------S---------LHLQ-----LV-----EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVL  168 (458)
T ss_pred             ----------c---------cccc-----cc-----cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHh
Confidence                      0         0000     00     00112234578999999999999999999999999999988888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++...+|+++..+|++|.+++..++.++..|+++++.+.    ..+.+.+  .++|.+..+|+++..+......    
T Consensus       169 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----  238 (458)
T PRK09029        169 SLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----  238 (458)
T ss_pred             hcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----
Confidence            88889999999999999999998778888999999998763    4566666  3799999999999999876443    


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD  321 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g  321 (499)
                      ..++|.+++||+.+++.+.+.+.. . +.++++.||+||++...+....   ....++|+|++++.+++++         
T Consensus       239 ~~~l~~i~~gG~~~~~~~~~~~~~-~-g~~~~~~YG~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~---------  304 (458)
T PRK09029        239 PLSLKAVLLGGAAIPVELTEQAEQ-Q-GIRCWCGYGLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD---------  304 (458)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHH-c-CCcEeccccccccCcceeccCC---CCCCCCCCCCCCCEEEEeC---------
Confidence            347999999999999998888764 3 7889999999999865443322   2235689999999999986         


Q ss_pred             CCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHH
Q 010854          322 QPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE  400 (499)
Q Consensus       322 ~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE  400 (499)
                          ||+++ ++..+.++  +.+++.+       ....+++||+|||+|++| +|++++.||.+|+|+++|.+|+|.+||
T Consensus       305 ----gel~v~g~~~~~gY--~~~~~~~-------~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE  370 (458)
T PRK09029        305 ----GEIWLRGASLALGY--WRQGQLV-------PLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIE  370 (458)
T ss_pred             ----CEEEEecCceeeee--ecCcccc-------ccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHH
Confidence                78888 44433321  1111111       112356899999999999 999999999999999999999999999


Q ss_pred             HHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHH
Q 010854          401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL  480 (499)
Q Consensus       401 ~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv  480 (499)
                      +++. .+|+|.+++|++.+++..+ +.++++|+...  ..+.++    ++++++++|++|+.|.++++++++|+|.+||+
T Consensus       371 ~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~v~~~~--~~~~~~----l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi  442 (458)
T PRK09029        371 RVIN-QHPLVQQVFVVPVADAEFG-QRPVAVVESDS--EAAVVN----LAEWLQDKLARFQQPVAYYLLPPELKNGGIKI  442 (458)
T ss_pred             HHHh-cCCCcceEEEEccCCcccC-ceEEEEEEcCc--ccCHHH----HHHHHHhhchhccCCeEEEEecccccCcCCCc
Confidence            9996 8999999999999998887 88999988663  234444    44456678999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 010854          481 LRRVLRDQIKHELSV  495 (499)
Q Consensus       481 ~r~~l~~~~~~~~~~  495 (499)
                      +|+.|++++.+..++
T Consensus       443 ~r~~L~~~~~~~~~~  457 (458)
T PRK09029        443 SRQALKEWVAQQLGN  457 (458)
T ss_pred             CHHHHHHHHHhccCC
Confidence            999999999987654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-52  Score=429.52  Aligned_cols=462  Identities=20%  Similarity=0.218  Sum_probs=339.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.++++....      ..+.+.....+.
T Consensus        65 ~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~  138 (545)
T PRK08162         65 IGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPG  138 (545)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999987542      222222111111


Q ss_pred             -ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 -KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                       ...++.............+..++..+......    ........+.+++++++|||||||.||+|+++|+++...+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~  214 (545)
T PRK08162        139 PKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP----DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN  214 (545)
T ss_pred             CceEEEecCccccccCCCcccccHHHHhccCCc----cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH
Confidence             12222211111000011223455555543211    1111122345689999999999999999999999876666555


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ...+.+..++++++.+|++|.+++...+...+.|++.++.. ..+++.+++.++++++|++.++|++++.|++.......
T Consensus       215 ~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~  293 (545)
T PRK08162        215 ILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA  293 (545)
T ss_pred             HHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc
Confidence            55567788899999999999999876444445666666654 46789999999999999999999999999876544333


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------CCccccccccCC-CceEE
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATM-TAGLV  309 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------~~~~~~~g~~~~-~~~~~  309 (499)
                      .+.+.+.++++|+.++....+.+.. . +..+++.||+||+++.+..+....          .....+.|.+.+ +..++
T Consensus       294 ~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  371 (545)
T PRK08162        294 GIDHPVHAMVAGAAPPAAVIAKMEE-I-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVT  371 (545)
T ss_pred             CCccceEEEECCCCCCHHHHHHHHH-h-CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEE
Confidence            4556677788999998888887764 3 788999999999864433321110          011244566554 34578


Q ss_pred             EEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCee
Q 010854          310 ILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM  387 (499)
Q Consensus       310 i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i  387 (499)
                      ++| +.+.+++.+...+|||++ ++..+.+  ++.+++.+...|.       ++||+|||++++|++|++++.||.+|++
T Consensus       372 i~d~~~~~~~~~~g~~~Gel~v~g~~~~~g--Y~~~~~~~~~~~~-------~g~~~TGDl~~~d~dg~l~~~GR~~~~i  442 (545)
T PRK08162        372 VLDPDTMQPVPADGETIGEIMFRGNIVMKG--YLKNPKATEEAFA-------GGWFHTGDLAVLHPDGYIKIKDRSKDII  442 (545)
T ss_pred             EEcCCCCcccCCCCCceeEEEEecCcchhh--hcCChhhhHHHhh-------CCCcccCceEEEcCCccEEEEecccceE
Confidence            888 578888763212599999 4443332  2333333333332       4699999999999999999999999999


Q ss_pred             eeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEE
Q 010854          388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK  467 (499)
Q Consensus       388 ~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~  467 (499)
                      +++|.+|+|.+||++|. .+|+|.+++|++.+++..+ +.+++++++.++...+.+++.+    .+++.|+.|+.|..++
T Consensus       443 ~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~~~  516 (545)
T PRK08162        443 ISGGENISSIEVEDVLY-RHPAVLVAAVVAKPDPKWG-EVPCAFVELKDGASATEEEIIA----HCREHLAGFKVPKAVV  516 (545)
T ss_pred             EeCCEEECHHHHHHHHH-hCCcccEEEEEeeeccccC-ceEEEEEEeCCCCCCCHHHHHH----HHHHhcccccCCcEEE
Confidence            99999999999999996 8999999999999887777 8899999988765555554444    4667899999998887


Q ss_pred             EcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          468 VVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       468 ~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      + ++||+|++||++|+.|++.+.+-
T Consensus       517 ~-~~iP~t~~gK~~r~~l~~~~~~l  540 (545)
T PRK08162        517 F-GELPKTSTGKIQKFVLREQAKSL  540 (545)
T ss_pred             e-cccCCCCCcCCcHHHHHHHHhhh
Confidence            5 68999999999999999886543

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.1e-53  Score=423.27  Aligned_cols=414  Identities=21%  Similarity=0.224  Sum_probs=329.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+.+.+..++++++++.+++++....      .   ..     
T Consensus        21 ~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~---~~-----   86 (436)
T TIGR01923        21 IRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSLLEE------K---DF-----   86 (436)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCcccc------c---ce-----
Confidence            679999999999999999999999999999999999999999999999999999999874210      0   00     


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                        ....+.++......    ..........+++++++|||||||.||+|+++|+++...+....
T Consensus        87 ------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~  144 (436)
T TIGR01923        87 ------------------QADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK  144 (436)
T ss_pred             ------------------eecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence                              00111111111110    01112234568999999999999999999999999998888888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++++|+++..+|++|.+++..++.++..|+++++.+..   +.+++.++++++|++.++|+++..|++.....   
T Consensus       145 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~---  218 (436)
T TIGR01923       145 ENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISLVPTQLNRLLDEGGHN---  218 (436)
T ss_pred             hhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC---
Confidence            888999999999999999999987789999999999998643   48899999999999999999999998875422   


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEE-CCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL-DECGVPYPD  320 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~-d~~g~~~~~  320 (499)
                       +++|.++++|+++++++.+++.. . +..+++.||+||++...............++|.|++++++++. ++.+     
T Consensus       219 -~~l~~~~~~G~~~~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~-----  290 (436)
T TIGR01923       219 -ENLRKILLGGSAIPAPLIEEAQQ-Y-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKE-----  290 (436)
T ss_pred             -CceEEEEECCCCCCHHHHHHHHH-h-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCC-----
Confidence             68999999999999998888764 3 7889999999999876554443322222358999999999994 4332     


Q ss_pred             CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854          321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI  399 (499)
Q Consensus       321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i  399 (499)
                       +  .||+++ ++..+.+  ++.+.....       ....++||+|||+++++++|++++.||.+|++|++|.+|+|.+|
T Consensus       291 -~--~Gel~v~~~~~~~g--y~~~~~~~~-------~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~i  358 (436)
T TIGR01923       291 -G--HGEIMVKGANLMKG--YLYQGELTP-------AFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEI  358 (436)
T ss_pred             -C--ceEEEEECCccchh--hCCChhhhh-------hhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHH
Confidence             3  499999 4443332  111111111       11245799999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      |+++. .++.|.++++++.++...+ ..+.+++++.++  .+.+++.++    +.+.|+.|+.|..++++++||+|++||
T Consensus       359 E~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~--~~~~~l~~~----l~~~l~~~~~p~~i~~~~~iP~t~~GK  430 (436)
T TIGR01923       359 ETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSESD--ISQAKLIAY----LTEKLAKYKVPIAFEKLDELPYNASGK  430 (436)
T ss_pred             HHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECCC--CCHHHHHHH----HHHhhhCCCCCeEEEEecCCCCCCCCc
Confidence            99996 8999999999988876666 788888887653  344445544    556888999999999999999999999


Q ss_pred             HHHHHH
Q 010854          480 LLRRVL  485 (499)
Q Consensus       480 v~r~~l  485 (499)
                      ++|++|
T Consensus       431 ~~r~~L  436 (436)
T TIGR01923       431 ILRNQL  436 (436)
T ss_pred             eecccC
Confidence            999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-53  Score=442.49  Aligned_cols=457  Identities=16%  Similarity=0.128  Sum_probs=329.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCH-----HHHHHHhhcCCeeEEEecccccccCccccchhhhh
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL   76 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   76 (499)
                      +++||+|+++++|+++|++++|||+++|++++|++|.++.     +++.+++++++++++|+++...     ........
T Consensus       102 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~  176 (624)
T PRK12582        102 LDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP-----FARALAAL  176 (624)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH-----HHHHHHhh
Confidence            6899999999999999999999999999999999999875     8999999999999999976310     00000111


Q ss_pred             hcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           77 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      .......+++..  ..    .......+.++......  ...........++++++++|||||||.||||+++|+++...
T Consensus       177 ~~~~~~~i~~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~  248 (624)
T PRK12582        177 DLLDVTVVHVTG--PG----EGIASIAFADLAATPPT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCAN  248 (624)
T ss_pred             hhcCceEEEEcC--CC----cccccccHHHHhhcCCc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHH
Confidence            111112222211  10    01123456665543211  00001112345789999999999999999999999999877


Q ss_pred             hhhcceeccCcC---CcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCCh---hHHHHHHHHhCCeEEecchHHHH
Q 010854          157 TAEGWAHIDLKV---GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       157 ~~~~~~~~~~~~---~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~---~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      .......+....   +++++.++|++|.+++.. ++.+++.|+++++.+..+.+   ..+++.++++++|++.++|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~  328 (624)
T PRK12582        249 IAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYA  328 (624)
T ss_pred             HHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHH
Confidence            665543333333   578999999999999865 77889999999987644433   34677788999999999999999


Q ss_pred             HHHccCCCC----cccccceeEEEeecCCCChhhHHHHHhhc----c-cCceeccccccceeeeeecCCCCCCCcccccc
Q 010854          230 AWRNTNCLE----GLDWTKIRSFASTGETSNVDDDLWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFS  300 (499)
Q Consensus       230 ~l~~~~~~~----~~~l~~l~~i~~~G~~l~~~~~~~~~~~~----~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g  300 (499)
                      .|++.....    ..+++++|.+++||+++++++.+++....    . +..+++.||+||++.+...... .....+++|
T Consensus       329 ~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG  407 (624)
T PRK12582        329 MLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIG  407 (624)
T ss_pred             HHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCC
Confidence            887643222    23468999999999999999999887642    1 2579999999999875543222 234568999


Q ss_pred             ccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEe-e---cCc
Q 010854          301 TATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR-T---VGG  375 (499)
Q Consensus       301 ~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~-~---~~G  375 (499)
                      +|+||+++++++       .|+  .|||+| ++..+.+  ++.+++.+...|      +.++||+|||+|++ |   ++|
T Consensus       408 ~p~pg~~v~i~~-------~G~--~GEl~vrg~~v~~G--Y~~~p~~t~~~f------~~dgw~~TGDlg~~~d~~~~~g  470 (624)
T PRK12582        408 LPLPGVELKLAP-------VGD--KYEVRVKGPNVTPG--YHKDPELTAAAF------DEEGFYRLGDAARFVDPDDPEK  470 (624)
T ss_pred             cCCCCcEEEEcc-------CCC--ceEEEEECCccccc--ccCCccchhhhc------CccCCccccceEEecCCcCCCC
Confidence            999999999963       455  499999 5554443  333333333333      35789999999998 4   569


Q ss_pred             eEEEecccCCeeee-CceeechHHHH--HHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecC----------CC----
Q 010854          376 YIIVQGRADDTMNL-GGIKTSSVEIE--RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK----------GF----  438 (499)
Q Consensus       376 ~l~~~gR~~d~i~~-~G~~v~~~~iE--~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~----------~~----  438 (499)
                      +|+++||.||+|+. +|++|+|.+||  .++. .||.|.+++|++.+++..+     +.|++..          +.    
T Consensus       471 ~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~-~~p~V~~a~VvG~~~~~~g-----~lv~p~~~~~~~~~~~~~~~~~~  544 (624)
T PRK12582        471 GLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAA-CSPVIHDAVVAGQDRAFIG-----LLAWPNPAACRQLAGDPDAAPED  544 (624)
T ss_pred             ceEEeccchhhEecCCCcEechHHHHHHHHHh-cCcchheEEEEcCCCCcEE-----EEEecCHHHHHHHHhcCCCCHHH
Confidence            99999999999995 89999999885  5665 8999999999998765443     3333221          11    


Q ss_pred             CCCHHHHHHHHHHHH---HhhcCCce-eeeEEEEcCCCCC------CCCcHHHHHHHHHHHHhhhhh
Q 010854          439 TSQPDKLKMIFSKAI---QSKLNPLF-KVSLVKVVPEFPR------TASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       439 ~~~~~~l~~~~~~~~---~~~l~~~~-~p~~~~~~~~iP~------t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      ..+.+++.+++++.+   ++.++.+. +|+++.+++++|+      |++||+.|+.+.+.|++++++
T Consensus       545 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~  611 (624)
T PRK12582        545 VVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVER  611 (624)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHH
Confidence            013345666655544   45677777 9999999998774      778899999999999998875

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-53  Score=397.42  Aligned_cols=471  Identities=18%  Similarity=0.175  Sum_probs=365.5

Q ss_pred             CCCCCE-EEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC
Q 010854            2 FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP   80 (499)
Q Consensus         2 v~~gd~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~   80 (499)
                      ++|+++ ++|+.+.+.+|+++.+||++.+..+|.++..+..+.+.+.|++++++.+|++.+++      +.+....+..+
T Consensus       111 ~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL------~kl~~~l~~~~  184 (678)
T KOG1180|consen  111 LKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELL------PKLKAPLKQAK  184 (678)
T ss_pred             CCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHH------HHHHHHHhccC
Confidence            455555 99999999999999999999999999999999999999999999999999999754      34444445555


Q ss_pred             CceEEecccCCC-------CC--CCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecch
Q 010854           81 LKAIVLPAIGND-------VG--IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL  151 (499)
Q Consensus        81 ~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~  151 (499)
                      ....++..+..+       .+  ........+++++++.+....    ..+.+..++|+|+|||||||||.||||+++|.
T Consensus       185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~  260 (678)
T KOG1180|consen  185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHS  260 (678)
T ss_pred             ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCCCCCceEEEEEcCCCCCCCceEEEecc
Confidence            555555544311       11  112345678999999887622    33444578999999999999999999999999


Q ss_pred             hhHHHhhhcceec-cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCCh-------hHHHHHHHHhCCeEEec
Q 010854          152 SSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-------RSFGKFVQDAGVTVLGT  223 (499)
Q Consensus       152 ~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~-------~~~~~~i~~~~~t~l~~  223 (499)
                      |+++.+....... .+.+.|+++.++|+.|.+-+..=+.+++.|+.+-..++....       ...-..+...|||.+.+
T Consensus       261 NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~  340 (678)
T KOG1180|consen  261 NIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAA  340 (678)
T ss_pred             cHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhh
Confidence            9999988777654 789999999999999999999888888999988876543211       12234567899999999


Q ss_pred             chHHHHHHHcc--------------------------CCCCc----------------ccccceeEEEeecCCCChhhHH
Q 010854          224 VPSLVKAWRNT--------------------------NCLEG----------------LDWTKIRSFASTGETSNVDDDL  261 (499)
Q Consensus       224 ~P~~l~~l~~~--------------------------~~~~~----------------~~l~~l~~i~~~G~~l~~~~~~  261 (499)
                      +|..++++.+.                          .....                .--.+||.+++||++++++.++
T Consensus       341 VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQr  420 (678)
T KOG1180|consen  341 VPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQR  420 (678)
T ss_pred             hHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHH
Confidence            99999877654                          00000                0124799999999999999999


Q ss_pred             HHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-ccccccccc
Q 010854          262 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASD  339 (499)
Q Consensus       262 ~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~  339 (499)
                      ++-..+ .+++.++||.||+++..+..+..+. ..+.+|.|++.++++++| ++|-=.+.+.|..|||++ ++....  +
T Consensus       421 F~nic~-C~Pv~qGYGLTEtca~~tv~e~~d~-~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~--g  496 (678)
T KOG1180|consen  421 FMNICF-CCPVLQGYGLTETCAAATVLEPEDF-STGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTM--G  496 (678)
T ss_pred             HHHHhc-cccccccccccchhcccEecChhhc-ccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccCh--h
Confidence            987665 5699999999999987776665443 446999999999999999 555444444434699999 555444  3


Q ss_pred             ccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee-CceeechHHHHHHHhhcCccceeeeEEEe
Q 010854          340 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISV  418 (499)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~~v~~~~v~~~  418 (499)
                      ++++++.+...|..   .+|.+||+|||+|++.+||.|.+.+|++|++|. +|+.|+++-+|+++. ..|.|...+|++-
T Consensus       497 Y~kn~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~-s~p~V~NICvyAd  572 (678)
T KOG1180|consen  497 YYKNEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALR-SSPYVDNICVYAD  572 (678)
T ss_pred             hhCChhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHh-cCcchhheEEecc
Confidence            66677777776652   467779999999999999999999999999995 999999999999996 9999999999876


Q ss_pred             CCCCCCceEEEEEEEecCCC----------CC-C------H----HHHHHHHHHHH-HhhcCCceeeeEEEEcCCCCCCC
Q 010854          419 SPAGGGPEVLVIFVVLKKGF----------TS-Q------P----DKLKMIFSKAI-QSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       419 ~~~~~~~~~~~~~v~~~~~~----------~~-~------~----~~l~~~~~~~~-~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      ...    ..++++||++++.          .. +      +    +++.+.+.+.- .++|..+.+|..|++.++ |+||
T Consensus       573 ~~~----s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e-~WTP  647 (678)
T KOG1180|consen  573 SNK----SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPE-PWTP  647 (678)
T ss_pred             ccc----ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCC-CcCC
Confidence            543    6789999998632          11 1      0    11222222222 568999999999999876 7655


Q ss_pred             -Cc------HHHHHHHHHHHHhhhhh
Q 010854          477 -SN------KLLRRVLRDQIKHELSV  495 (499)
Q Consensus       477 -~G------Kv~r~~l~~~~~~~~~~  495 (499)
                       +|      |+.|+.++..|+++++.
T Consensus       648 enGlvT~A~KLKRk~I~~~~k~ei~~  673 (678)
T KOG1180|consen  648 ENGLVTAALKLKRKEILAAYKKEIDR  673 (678)
T ss_pred             CccccHHHHHhhHHHHHHHHHHHHHH
Confidence             44      99999999999998875

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-52  Score=433.94  Aligned_cols=444  Identities=19%  Similarity=0.198  Sum_probs=333.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCC-------HHHHHHHhhcCCeeEEEecccccccCccccchhh
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK   74 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~   74 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..+       .+++.++++.++++++|+++...      +.+..
T Consensus        71 i~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~------~~~~~  144 (579)
T PRK09192         71 LKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELL------PWVNE  144 (579)
T ss_pred             CCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHH------HHHHH
Confidence            689999999999999999999999999999999986432       68999999999999999987532      11111


Q ss_pred             hhhcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           75 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      ...... ..                ...++.++......     ........++++++++|||||||.||+|.++|+++.
T Consensus       145 ~~~~~~-~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~  202 (579)
T PRK09192        145 ATHGNP-LL----------------HVLSHAWFKALPEA-----DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALM  202 (579)
T ss_pred             hhcccc-cc----------------ceeehhhhcccCCC-----ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHH
Confidence            110000 00                11123333221111     111123456899999999999999999999999999


Q ss_pred             HHhhhcce-eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854          155 RCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       155 ~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      ..+..... .++++++|+++.++|++|.+++.. ++.++..|+++++.+..   ..+..+++.+.+++++.++..|.++.
T Consensus       203 ~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~  282 (579)
T PRK09192        203 ANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYE  282 (579)
T ss_pred             HHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHH
Confidence            88877766 788999999999999999999886 77788899998776521   14678999999999998777665555


Q ss_pred             HHHccC---CCCcccccceeEEEeecCCCChhhHHHHHhhccc-----CceeccccccceeeeeecCCCCCC--------
Q 010854          230 AWRNTN---CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY-----NAIIESCGGTELSSAYIQGSLLQP--------  293 (499)
Q Consensus       230 ~l~~~~---~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~-----~~i~~~yg~tE~~~~~~~~~~~~~--------  293 (499)
                      .+....   .....+++++|.++++|+.+++.+.+.+...+..     ..+++.||+||++..+........        
T Consensus       283 l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~  362 (579)
T PRK09192        283 LCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDR  362 (579)
T ss_pred             HHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcH
Confidence            444322   1233568899999999999999998888766531     358999999999765543322110        


Q ss_pred             -------------------CccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcC
Q 010854          294 -------------------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  353 (499)
Q Consensus       294 -------------------~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~  353 (499)
                                         ....++|.|+|+++++|+|+++.+++.++  +|||++ ++..+.+  ++.+ ..+...   
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~--~Gel~i~g~~~~~g--Y~~~-~~~~~~---  434 (579)
T PRK09192        363 DRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERV--VGHICVRGPSLMSG--YFRD-EESQDV---  434 (579)
T ss_pred             HHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCC--EEEEEecCCchhhh--hcCC-cccccc---
Confidence                               11357899999999999999999999988  699999 5544432  2222 221111   


Q ss_pred             CCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccce--eeeEEEeCCCCCCceEEEEE
Q 010854          354 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIF  431 (499)
Q Consensus       354 ~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~~v~~~~~~~~~~~~~~~~  431 (499)
                         ...++||+|||+|++ ++|+++++||.+|+||++|++|+|.+||++|. .||+|.  ++++++++++. + +.++++
T Consensus       435 ---~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~p~V~~~~~~v~~~~~~~-~-~~~~~~  507 (579)
T PRK09192        435 ---LAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAE-QEPELRSGDAAAFSIAQEN-G-EKIVLL  507 (579)
T ss_pred             ---ccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHH-hcCCccCCcEEEEEeccCC-C-eeEEEE
Confidence               234679999999999 99999999999999999999999999999996 899998  88999988874 4 578888


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC--CCCCCCCcHHHHHHHHHHHHh
Q 010854          432 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       432 v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~--~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++...+...+.+++.+++++.+.   ..+..|..+++++  +||+|++||++|++|++++..
T Consensus       508 v~~~~~~~~~~~~l~~~~~~~l~---~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        508 VQCRISDEERRGQLIHALAALVR---SEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             EEecCCChHHHHHHHHHHHHHHH---HHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence            87765544455566666655442   2356776677774  899999999999999998865

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-51  Score=426.06  Aligned_cols=452  Identities=18%  Similarity=0.181  Sum_probs=319.8

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCC---CCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA   79 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   79 (499)
                      ++||+|+++++|++++++++|||+++|++++|+++   ..+.+++.+++++++++++++++....      .+.......
T Consensus        57 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~  130 (578)
T PRK05850         57 STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQ  130 (578)
T ss_pred             CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhc
Confidence            47999999999999999999999999999999997   457899999999999999999875431      111111100


Q ss_pred             C--CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHh
Q 010854           80 P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT  157 (499)
Q Consensus        80 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~  157 (499)
                      .  ....++.....              ++   ...    ..........+++++++|||||||.||||.++|+++...+
T Consensus       131 ~~~~~~~~~~~~~~--------------~~---~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~  189 (578)
T PRK05850        131 PGQSAPPVIEVDLL--------------DL---DSP----RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANF  189 (578)
T ss_pred             ccccccceEeeccc--------------cc---ccC----CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHH
Confidence            0  00001100000              00   000    0001123456899999999999999999999999998776


Q ss_pred             hhccee-cc-----CcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHH
Q 010854          158 AEGWAH-ID-----LKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL  227 (499)
Q Consensus       158 ~~~~~~-~~-----~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~  227 (499)
                      ...... +.     ...++++++++|++|.++++. ++.+++.|+++++.++.   .++..+++.+++++++++ .+|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~  268 (578)
T PRK05850        190 EQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNF  268 (578)
T ss_pred             HHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcH
Confidence            544322 11     356789999999999999876 89999999999988642   257889999999999865 45655


Q ss_pred             HH-HHHccC---CCCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCCC-----
Q 010854          228 VK-AWRNTN---CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP-----  293 (499)
Q Consensus       228 l~-~l~~~~---~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~~-----  293 (499)
                      +. .+....   .....+++++|.+++||+++++++.+++...+.     +..+++.||+||++..+........     
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  348 (578)
T PRK05850        269 AFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVR  348 (578)
T ss_pred             HHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEE
Confidence            43 333221   112346789999999999999999888877653     2468999999998754332211100     


Q ss_pred             -------------------CccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhc
Q 010854          294 -------------------QAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFR  352 (499)
Q Consensus       294 -------------------~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~  352 (499)
                                         ....++|.|. +.+++++| +++.+++.|+  .|||+| ++..+.+  ++.+++.+...|.
T Consensus       349 ~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~--~Gel~v~g~~~~~g--Y~~~~~~t~~~f~  423 (578)
T PRK05850        349 FDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT--VGEIWVHGDNVAAG--YWQKPEETERTFG  423 (578)
T ss_pred             ECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC--EEEEEEecCccccc--ccCChhhhHHHhh
Confidence                               0011334443 57899999 6688999998  599999 6555443  3445555554553


Q ss_pred             CC---C--CCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceE
Q 010854          353 GM---P--MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV  427 (499)
Q Consensus       353 ~~---~--~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~  427 (499)
                      ..   +  ....++||+|||+|+++ +|+++++||.||+||++|++|+|.+||++|. .|+.+ ++++++++++ .+ +.
T Consensus       424 ~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~  498 (578)
T PRK05850        424 ATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EK  498 (578)
T ss_pred             cccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eE
Confidence            10   0  01134799999999998 9999999999999999999999999999997 88885 5788888876 55 88


Q ss_pred             EEEEEEecCCCCCCHHH--HHHHHHHHHHhhcCCc--eeeeEEEEcC--CCCCCCCcHHHHHHHHHHHHhh
Q 010854          428 LVIFVVLKKGFTSQPDK--LKMIFSKAIQSKLNPL--FKVSLVKVVP--EFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       428 ~~~~v~~~~~~~~~~~~--l~~~~~~~~~~~l~~~--~~p~~~~~~~--~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      ++++|+.+++...+.++  ....+++.+...+..+  ..|..+++++  +||+|++||++|++|++.|.+.
T Consensus       499 ~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        499 LVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             EEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence            99999988765433332  2334444444444322  2455666664  8999999999999999998764

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-50  Score=415.74  Aligned_cols=440  Identities=19%  Similarity=0.154  Sum_probs=324.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHH-------HHHHhhcCCeeEEEecccccccCccccchhh
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE-------IATRLRVSKAKGIFTQDFILRGGRKFPLYSK   74 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~   74 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++..+.++       ...+++.++++.+++++.....      .. 
T Consensus        51 ~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~-  123 (545)
T PRK07768         51 VGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAA------AP-  123 (545)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhh------hh-
Confidence            689999999999999999999999999999999998877544       4556888899999997743210      00 


Q ss_pred             hhhcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           75 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      .....                  ......++++......       ......++++++++|||||||.||+|+++|+++.
T Consensus       124 ~~~~~------------------~~~~~~~~~l~~~~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~  178 (545)
T PRK07768        124 VLEEK------------------GIRVLTVADLLAADPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLY  178 (545)
T ss_pred             hhccc------------------CCceeehhhhcccCCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHH
Confidence            00000                  0112344444432111       1223457999999999999999999999999999


Q ss_pred             HHhhhcceeccCcCC-cEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854          155 RCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       155 ~~~~~~~~~~~~~~~-~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      ..+......+++..+ |++++.+|++|.+++.. ++.++..|+++++.++.   .++..+.+.+++++++.+.+.|.++.
T Consensus       179 ~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  258 (545)
T PRK07768        179 ANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYA  258 (545)
T ss_pred             HHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHH
Confidence            888777777777776 89999999999999876 77889999999887642   14667889999999999988887776


Q ss_pred             HHHccC----CCCcccccceeEEEeecCCCChhhHHHHHhh---cc--cCceeccccccceeeeeecCCCCC--------
Q 010854          230 AWRNTN----CLEGLDWTKIRSFASTGETSNVDDDLWLSSK---AW--YNAIIESCGGTELSSAYIQGSLLQ--------  292 (499)
Q Consensus       230 ~l~~~~----~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~---~~--~~~i~~~yg~tE~~~~~~~~~~~~--------  292 (499)
                      .+.+..    .....+++++|.++++|+++++...+++.+.   +.  ...+++.||+||++..+.......        
T Consensus       259 ~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~  338 (545)
T PRK07768        259 LLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVD  338 (545)
T ss_pred             HHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeec
Confidence            655432    1224667899999999999999998887653   21  235999999999987554322110        


Q ss_pred             -----------------CCccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCC
Q 010854          293 -----------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGM  354 (499)
Q Consensus       293 -----------------~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~  354 (499)
                                       ....+++|.|+++++++++|+++++++.|+  .||+++ ++..+.++.   +....      .
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~--~Gel~v~~~~~~~gy~---~~~~~------~  407 (545)
T PRK07768        339 ADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRG--VGVIELRGESVTPGYL---TMDGF------I  407 (545)
T ss_pred             hhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCC--EEEEEEccCccccccc---CCCCC------c
Confidence                             113468899999999999999999999998  599999 443333211   11100      1


Q ss_pred             CCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCC--CCCCceEEEEEE
Q 010854          355 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP--AGGGPEVLVIFV  432 (499)
Q Consensus       355 ~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~--~~~~~~~~~~~v  432 (499)
                      +....++||+|||+++++++|+++++||.+|+++.+|.+|+|.+||+++. .+|+|.+++|+++..  ...+ +...+++
T Consensus       408 ~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v  485 (545)
T PRK07768        408 PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAV  485 (545)
T ss_pred             ccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEE
Confidence            11234579999999999999999999999999999999999999999996 899999988776653  3333 4555555


Q ss_pred             EecCCCCCCHH---HHHHHHHHHHHhhcCCceeeeEEEEcC--CCCCCCCcHHHHHHHHHHHH
Q 010854          433 VLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQIK  490 (499)
Q Consensus       433 ~~~~~~~~~~~---~l~~~~~~~~~~~l~~~~~p~~~~~~~--~iP~t~~GKv~r~~l~~~~~  490 (499)
                      ......  +..   ++.+++++.+...+.  ..|..+.+++  +||+|++||++|+.++++|.
T Consensus       486 ~~~~~~--~~~~~~~l~~~~~~~l~~~~~--~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        486 ESNAFE--DPAEVRRIRHQVAHEVVAEVG--VRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             Eecccc--cHHHHHHHHHHHHHHHHHHhC--CCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            443321  222   344444443333222  5677787776  89999999999999999875

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-50  Score=375.73  Aligned_cols=462  Identities=20%  Similarity=0.173  Sum_probs=354.4

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      ++.||+|+++|+|+++|+...|+++++|++...||+.+.-+.+.|.++.++++++|++++++.      ...++.+... 
T Consensus       126 l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~  199 (649)
T KOG1179|consen  126 LKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIK  199 (649)
T ss_pred             cccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhh
Confidence            688999999999999999999999999999999999999999999999999999999997642      2223322221 


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ....++..+...    ...+..++...++.....+.+ .......+-.++++.+|||||||.||+.+++|..+...+...
T Consensus       200 ~~i~~~~~~~~~----~~~g~~~L~~~l~~~~~~~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~  274 (649)
T KOG1179|consen  200 NGIHVFSLGPTS----VPDGIESLLAKLSAAPKHPVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGF  274 (649)
T ss_pred             ccceEEecCCCC----CCchHHHHHHhhcccccCCCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            223333222111    122333333333333331211 122344667789999999999999999999999988888877


Q ss_pred             ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ...++++++|+++.++|++|+++.+. +..++..|+++++-. .++...+++.+.+++||+..-+..+.+.|++.+..+.
T Consensus       275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~  353 (649)
T KOG1179|consen  275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE  353 (649)
T ss_pred             HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh
Confidence            78899999999999999999999876 999999999999986 7889999999999999999999999999999987766


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCcccccccc-------CCCceEEEEC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-------TMTAGLVILD  312 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~i~d  312 (499)
                      ..-..+|..+-.|  +.+++++.|..++...++.+.||+||...... +.   ....+.+|..       .|..-++.-.
T Consensus       354 er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~-N~---d~~vGA~G~~~~~~~~l~p~~LIk~D~  427 (649)
T KOG1179|consen  354 ERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLV-NY---DGRVGACGFMSRLLKLLYPFRLIKVDP  427 (649)
T ss_pred             hcCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceee-ee---cCccccccchhhhhhhccceEEEEecC
Confidence            6567888886666  77999999999997778999999999776433 22   2334444431       1222223222


Q ss_pred             CCCCC----------CCCCCCcceeeEecccccccc----ccccc-ccccchhhcCCCCCCCccccccCceeEeecCceE
Q 010854          313 ECGVP----------YPDDQPCVGEVGLFPLYLGAS----DRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI  377 (499)
Q Consensus       313 ~~g~~----------~~~g~~~~Gei~v~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l  377 (499)
                      ++|++          |++|++  |.+. +.-....|    ..+.+ ...++.....+-+.+||.||+|||+..+|+.|++
T Consensus       428 ~t~E~iRd~~G~Ci~~~~GEp--GlLv-~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~Gyl  504 (649)
T KOG1179|consen  428 ETGEPIRDSQGLCIPCPPGEP--GLLV-GKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYL  504 (649)
T ss_pred             CCCceeecCCceEEECCCCCC--ceEE-EEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcE
Confidence            55554          455554  5322 21111111    22222 3444444444566789999999999999999999


Q ss_pred             EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhc
Q 010854          378 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL  457 (499)
Q Consensus       378 ~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l  457 (499)
                      ||.+|..|++..+|+||++.|||++|. ...++.|+.|+++.-+..+...-+|.|+..++...+.+.+.++    +.+.|
T Consensus       505 YF~DRtGDTFRWKGENVsTtEVe~~l~-~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~----l~~~L  579 (649)
T KOG1179|consen  505 YFKDRTGDTFRWKGENVSTTEVEDVLS-ALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQH----LRENL  579 (649)
T ss_pred             EEeccCCCceeecCCcccHHHHHHHHh-hhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHH----HHhhC
Confidence            999999999999999999999999995 8999999999999877665466788888888777777666666    55689


Q ss_pred             CCceeeeEEEEcCCCCCCCCcHHHHHHHHHHH
Q 010854          458 NPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI  489 (499)
Q Consensus       458 ~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~  489 (499)
                      ++|-+|.-+.++++|++|.+-|..+..|.+..
T Consensus       580 P~YA~P~FlRl~~~i~~TgTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  580 PSYARPRFLRLQDEIEKTGTFKLQKTELQKEG  611 (649)
T ss_pred             ccccchHHHHHHhhhhcccchhhHHHHHHHcc
Confidence            99999999999999999999999999887643

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=7.4e-48  Score=382.65  Aligned_cols=378  Identities=20%  Similarity=0.188  Sum_probs=301.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++.+++++.........          ..
T Consensus        22 ~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~----------~~   91 (408)
T TIGR01733        22 VGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRLAGL----------VL   91 (408)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhcccc----------CC
Confidence            68899999999999999999999999999999999999999999999999999999988643211111          00


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+..              .+.........    ..........+++++++|||||||.||+|.++|+++...+....
T Consensus        92 ~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~  153 (408)
T TIGR01733        92 PIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLA  153 (408)
T ss_pred             ceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHH
Confidence            1111100              00000000000    00111114578999999999999999999999999999888888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCC--hhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+.++++|+++...|++|.+++..++.++..|+++++.+....  +..+.+.++++++|.+.++|++++.|.+...   
T Consensus       154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---  230 (408)
T TIGR01733       154 RRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---  230 (408)
T ss_pred             HhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---
Confidence            88888999999999999999998889999999999999876554  6789999999999999999999999988754   


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC--CCCC--ccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQPQ--AFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~--~~~~--~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      .+++++|.++++|+++++++.+.+.+.+.+..+++.||+||++..+.....  ....  ...++|+|+++++++|+|+++
T Consensus       231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~  310 (408)
T TIGR01733       231 PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDL  310 (408)
T ss_pred             hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCC
Confidence            557899999999999999999999988866889999999999876642211  1111  267899999999999999889


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCcc--ccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMC--LRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      ++++.|+  .||+++ ++..+.+  ++.+++.+...+...+....++  ||+|||++++|++|++++.||.+|+++.+|+
T Consensus       311 ~~~~~g~--~Gel~v~~~~~~~g--y~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~  386 (408)
T TIGR01733       311 RPVPVGV--VGELYIGGPGVARG--YLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGY  386 (408)
T ss_pred             CCCCCCC--ceEEEecCcccccc--ccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeE
Confidence            9999998  599999 5444432  2233333443444333333333  9999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeE
Q 010854          393 KTSSVEIERVCDQADESILETAA  415 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v  415 (499)
                      +|+|.+||+++. .+++|.+++|
T Consensus       387 ~v~~~~ie~~l~-~~~~v~~~~v  408 (408)
T TIGR01733       387 RIELGEIEAALL-RHPGVREAVV  408 (408)
T ss_pred             EechHHHHHHHh-cCcchhhhcC
Confidence            999999999996 8999988764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-45  Score=356.35  Aligned_cols=322  Identities=18%  Similarity=0.168  Sum_probs=259.9

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEe--cCC
Q 010854          125 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL--YQG  202 (499)
Q Consensus       125 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~--~~~  202 (499)
                      ..++++++++|||||||.||+|+++|+++...+......  +...++.+..+|++|.+++..++.+++.|+++++  .+.
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~  109 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA  109 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence            346899999999999999999999999998877655443  3355678889999999998888889999999888  344


Q ss_pred             CCChhHHHHHHHHhC--CeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccc
Q 010854          203 SPLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE  280 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~--~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE  280 (499)
                      .+++..+++.+++++  .++...+|..+..++.... ...++++++.++++|+.+++++.+++.. . +.++++.||+||
T Consensus       110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~-~~~v~~~YG~TE  186 (358)
T PRK07824        110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAA-A-GINVVRTYGMSE  186 (358)
T ss_pred             CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHh-c-CCcEEecccCCc
Confidence            567889999999998  5667778888887766543 2345789999999999999999888764 3 788999999999


Q ss_pred             eeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCC
Q 010854          281 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKG  359 (499)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (499)
                      ++..+           ...|.|++++++++.|             ||+++ ++..+.++  +.+.. ..       ....
T Consensus       187 ~~~~~-----------~~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY--~~~~~-~~-------~~~~  232 (358)
T PRK07824        187 TSGGC-----------VYDGVPLDGVRVRVED-------------GRIALGGPTLAKGY--RNPVD-PD-------PFAE  232 (358)
T ss_pred             cCCCc-----------CcCceeCCCCEEEecC-------------CEEEEecCcccccc--CCCcc-cc-------cccC
Confidence            87532           1357899999999843             77777 44333321  11111 11       1123


Q ss_pred             ccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC
Q 010854          360 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT  439 (499)
Q Consensus       360 ~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~  439 (499)
                      ++||+|||++++ .+|++++.||.||+||++|++|+|.+||++|. .||+|.+++|++.+++..+ +.++++++...+..
T Consensus       233 ~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~~~~~  309 (358)
T PRK07824        233 PGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGDGGPA  309 (358)
T ss_pred             CCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeCCCCC
Confidence            469999999999 89999999999999999999999999999996 8999999999999988888 88999998776555


Q ss_pred             CCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          440 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       440 ~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      .+.+++.++    +++.|+.|+.|..++++++||+|++||++|++|+++|.++
T Consensus       310 ~~~~~i~~~----~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  358 (358)
T PRK07824        310 PTLEALRAH----VARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE  358 (358)
T ss_pred             cCHHHHHHH----HHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhcC
Confidence            555555544    6678899999999999999999999999999999998753

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5e-46  Score=370.51  Aligned_cols=360  Identities=24%  Similarity=0.256  Sum_probs=265.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCcccc--chhhhhhcC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP--LYSKVLGAA   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~   79 (499)
                      +++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|+ .+..   +...  .+.......
T Consensus        43 ~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~~~~~~~~~~~~  118 (417)
T PF00501_consen   43 VKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEPLKKLKSIFKQE  118 (417)
T ss_dssp             SSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHHHHHHHHHHTTS
T ss_pred             CCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeEEEE-eccc---cccccccchhhhccc
Confidence            689999999999999999999999999999999999999999999999999999997 1000   0111  111122211


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCC-CCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      .....++.....        .....+.+....... ...    .. ..++++++++|||||||.||+|.++|+++.+.+.
T Consensus       119 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~  185 (417)
T PF00501_consen  119 DPSSSIIILDRD--------DLPKKEALKSASLSD-EPQ----SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQAR  185 (417)
T ss_dssp             TTTEEEEEESHS--------SCTTCHHHHHHHHCH-CSH----STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHH
T ss_pred             cccccccccccc--------ccccccccccccccc-ccc----cCCCCccceeEeecccccccccccccccccccccccc
Confidence            122222211111        111111111110000 000    00 0569999999999999999999999999998877


Q ss_pred             hcc--eeccCcCCcEEEeecCccccchh-hhhhhhhccCcEEEecCCCCC--hhHHHHHHHHhCCeEEecchHHHHHHHc
Q 010854          159 EGW--AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRN  233 (499)
Q Consensus       159 ~~~--~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~~~~t~l~~~P~~l~~l~~  233 (499)
                      ...  ..++++  |++++.+|++|.+++ ..++.+++.|+++++.+....  ++.+++.++++++|++.++|++++.+++
T Consensus       186 ~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~  263 (417)
T PF00501_consen  186 ALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQ  263 (417)
T ss_dssp             HHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHH
T ss_pred             ccccccccccC--ceEEeeccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccc
Confidence            754  112223  699999999999999 569999999999999985432  4678999999999999999999999988


Q ss_pred             cCCCC----cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC-CCCCCccccccccCCCceE
Q 010854          234 TNCLE----GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGL  308 (499)
Q Consensus       234 ~~~~~----~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~-~~~~~~~~~~g~~~~~~~~  308 (499)
                      ..+..    ..+++++|.++++|+++++++.+.+++.++...+++.||+||++.+++... .......+++|.|+|++++
T Consensus       264 ~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  343 (417)
T PF00501_consen  264 SPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEV  343 (417)
T ss_dssp             HHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEE
T ss_pred             cccccccccccccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccccccccccccccc
Confidence            43222    357889999999999999999999998875558999999999998876443 2233466789999999999


Q ss_pred             EEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCe
Q 010854          309 VILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT  386 (499)
Q Consensus       309 ~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~  386 (499)
                      +|+|++ +++++.|+  .|||++ ++..+.+  ++.+++.+...|.      .++||+|||+|++|++|+++++||.||+
T Consensus       344 ~ivd~~~~~~~~~g~--~Gei~i~~~~~~~g--y~~~~~~~~~~~~------~~~~~~TGD~g~~d~~G~~~~~GR~~~~  413 (417)
T PF00501_consen  344 KIVDPNTGEPLPPGE--PGEIVIRGPNVFSG--YYNDPELTAEAFI------DDGWYRTGDLGRLDEDGYLYILGRSDDM  413 (417)
T ss_dssp             EEECTTTSSBESTTS--EEEEEEESTTSBSE--ETTBHHHHHHHEE------TTSEEEEEEEEEEETTSEEEEEEEGSCE
T ss_pred             ccccccccccccccc--cccccccCCcccee--eeccccccccccc------cccceecceEEEECCCCeEEEEEeeCCE
Confidence            999966 99999999  499999 5544432  2223334444443      1469999999999999999999999999


Q ss_pred             eeeC
Q 010854          387 MNLG  390 (499)
Q Consensus       387 i~~~  390 (499)
                      ||++
T Consensus       414 i~~~  417 (417)
T PF00501_consen  414 IKVR  417 (417)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1e-40  Score=360.79  Aligned_cols=430  Identities=14%  Similarity=0.077  Sum_probs=298.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      |++||+|+|+++|+++|+++.+||+++|++.+|+++  +.+++.+++++++++++|++....      ..+..+... ..
T Consensus       479 V~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~-~L  549 (1452)
T PTZ00297        479 VRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSR-KL  549 (1452)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhccc-CC
Confidence            789999999999999999999999999999999975  467999999999999999987533      222222211 22


Q ss_pred             ceEEecccCCCCC---C--CCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEe---cCCCCCCCceEEecchhh
Q 010854           82 KAIVLPAIGNDVG---I--PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSS  153 (499)
Q Consensus        82 ~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGtTG~pk~v~~s~~~~  153 (499)
                      ..++......+..   .  .......+|++++..+...+   .......+++|++.|+|   ||||||.||||++||+++
T Consensus       550 r~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~---~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nl  626 (1452)
T PTZ00297        550 ETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP---VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADV  626 (1452)
T ss_pred             cEEEEECCCcccccccccccCCcceeeHHHHHhcCcccC---ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHH
Confidence            2222222110000   0  00112467889887653211   11123346889999996   999999999999999999


Q ss_pred             HHHhhhcceec---cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          154 IRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       154 ~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      +..+.......   ...++|+++.++|++|.++....+.+++.|+++..    ++++.+++.|++++||++.++|.+++.
T Consensus       627 la~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ek  702 (1452)
T PTZ00297        627 LRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFST  702 (1452)
T ss_pred             HHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHH
Confidence            98887765322   35678999999999999997677788999999864    357899999999999999999999987


Q ss_pred             HHccCCCC--------------------------ccc----------------ccceeEEEeecC--CCChhhHHHHHhh
Q 010854          231 WRNTNCLE--------------------------GLD----------------WTKIRSFASTGE--TSNVDDDLWLSSK  266 (499)
Q Consensus       231 l~~~~~~~--------------------------~~~----------------l~~l~~i~~~G~--~l~~~~~~~~~~~  266 (499)
                      +.+....+                          +..                -.++|.+++||.  .++..     ...
T Consensus       703 I~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~-----l~~  777 (1452)
T PTZ00297        703 SRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFS-----LLE  777 (1452)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChH-----HhC
Confidence            75431000                          000                146888888873  33322     212


Q ss_pred             cccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEecccccccccccccccc
Q 010854          267 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH  346 (499)
Q Consensus       267 ~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~  346 (499)
                        +..++..||.||+..   .+....   ....|.|+|+++++|.+....-..+.   .||++++  +.+      +++ 
T Consensus       778 --~i~i~~g~glTE~~~---~~~~~~---~~~~G~PlpgvEvKI~~~~E~~~~~~---~GEIlvr--~~k------dpe-  837 (1452)
T PTZ00297        778 --HISVCYVPCLREVFF---LPSEGV---FCVDGTPAPSLQVDLEPFDEPSDGAG---IGQLVLA--KKG------EPR-  837 (1452)
T ss_pred             --CceEEEecceEEeee---ecCCCC---cccCCeecCceEEEEcccccccCCCC---CCeEEEE--ECC------ChH-
Confidence              466888999999542   222221   22349999999999987321111222   4999983  112      222 


Q ss_pred             cchhhcCCCCCCCccccccCce-eEeecCceEEEecccCCeee-eCceeechHHHHHHHhhcCccceeeeEEEeCCCCCC
Q 010854          347 EEVYFRGMPMYKGMCLRRHGDI-IKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILETAAISVSPAGGG  424 (499)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~TGD~-~~~~~~G~l~~~gR~~d~i~-~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~  424 (499)
                                       .|++. +.|++||+|+|.||+||+|| .+|++|+|+.||+.+. .+|.|..++|++-..    
T Consensus       838 -----------------~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~-~sp~I~qi~V~Gd~~----  895 (1452)
T PTZ00297        838 -----------------RTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFS-QSRYVNDIFLYADPS----  895 (1452)
T ss_pred             -----------------HHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHh-cCCCccEEEEEecCC----
Confidence                             22222 24557999999999999999 5999999999999996 899999999997653    


Q ss_pred             ceEEEEEEEecCCCC-------------------CCHHHHHH----HHHHH---H--HhhcCCceeeeEEEEcC-CC---
Q 010854          425 PEVLVIFVVLKKGFT-------------------SQPDKLKM----IFSKA---I--QSKLNPLFKVSLVKVVP-EF---  472 (499)
Q Consensus       425 ~~~~~~~v~~~~~~~-------------------~~~~~l~~----~~~~~---~--~~~l~~~~~p~~~~~~~-~i---  472 (499)
                       ..++|+|+++...-                   .+..++.+    .+.+.   +  .+.+..+++++.+++++ ++   
T Consensus       896 -k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~e  974 (1452)
T PTZ00297        896 -RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDH  974 (1452)
T ss_pred             -CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCC
Confidence             44888888764111                   02233322    12221   2  12356677887777764 44   


Q ss_pred             --CCCCCcHHHHHHHHHHHHhhhhh
Q 010854          473 --PRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       473 --P~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                        -+|++.|+.|+.+.+.|++++++
T Consensus       975 nGlLTPTlKlKR~~I~~kY~~~Ie~  999 (1452)
T PTZ00297        975 STFLTPYGKIRRDAVHSYFSSVIER  999 (1452)
T ss_pred             CCcCChhhhhhHHHHHHHHHHHHHH
Confidence              36999999999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=3.5e-40  Score=319.07  Aligned_cols=289  Identities=14%  Similarity=0.130  Sum_probs=226.3

Q ss_pred             CCeEEEEecCCCCCCCceEEecchhhHHHhhhcceeccCcC--CcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC
Q 010854          128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP  204 (499)
Q Consensus       128 ~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~  204 (499)
                      +..++++|||||||.||+|+++|+++...+......++++.  .++++..+|++|.+++.. ++.++..|+++++.+ .+
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence            56889999999999999999999999888877766666643  468999999999999765 788899999999886 45


Q ss_pred             ChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeee
Q 010854          205 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA  284 (499)
Q Consensus       205 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  284 (499)
                      ++..+++.++.+  |++.++|++++.+.+..    .++++++. +++|+++++++.+.+... ....+++.||+||++++
T Consensus       174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i  245 (386)
T TIGR02372       174 PASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI  245 (386)
T ss_pred             ChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence            667777777643  89999999999997752    34667775 678999999999888764 22469999999999875


Q ss_pred             eecCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccc
Q 010854          285 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR  364 (499)
Q Consensus       285 ~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (499)
                      .....      .+..+.+.|+.++.+ + ++.          +.                        +     ...|++
T Consensus       246 ~~~~~------~~~~~~~~p~~~~~~-~-~~~----------~~------------------------g-----~~~~~~  278 (386)
T TIGR02372       246 GLREA------PDDPFRLLPDLACFA-D-TLS----------SA------------------------G-----LARRLD  278 (386)
T ss_pred             ccccC------CCCCcccCCCccccC-C-Ccc----------CC------------------------C-----ccceee
Confidence            43221      123456666655432 1 110          00                        0     012579


Q ss_pred             cCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHH
Q 010854          365 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK  444 (499)
Q Consensus       365 TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  444 (499)
                      |||++++|++|+++++||.||+||++|++|+|.+||+++. .||+|.+++|+.     .+ +++.++|++.++.  +.+.
T Consensus       279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~~~--~~~~  349 (386)
T TIGR02372       279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAEDA--DEAE  349 (386)
T ss_pred             cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECCCC--ChHH
Confidence            9999999999999999999999999999999999999997 899999998852     24 7889999987543  2334


Q ss_pred             HHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHH
Q 010854          445 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL  481 (499)
Q Consensus       445 l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~  481 (499)
                      +.+.+++++.++|+.|+.|..+.++++||+|++||++
T Consensus       350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            5566777788899999999999999999999999974

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=3.6e-36  Score=298.64  Aligned_cols=327  Identities=19%  Similarity=0.176  Sum_probs=237.2

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh---cceeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEEec
Q 010854          125 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALY  200 (499)
Q Consensus       125 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~---~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~  200 (499)
                      .+.++++.+++||||||.||++.++|.++......   ....++++++|++++..+..+..+.. ..+.+...|++++.+
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            35578899999999999999999999987654332   23346788999988766655433333 356678889999877


Q ss_pred             CCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceeccccc
Q 010854          201 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  278 (499)
Q Consensus       201 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~  278 (499)
                      +. ..++.+++.|++++||++.++|+++..|++.....+.+  ..++|.++++||++++++.+.+.+.+ ++++++.||+
T Consensus       152 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~  229 (422)
T TIGR02155       152 SG-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGL  229 (422)
T ss_pred             CC-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccc
Confidence            64 35688999999999999999999999988754433332  35899999999999999998887766 7899999999


Q ss_pred             cceee--eeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCC
Q 010854          279 TELSS--AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  355 (499)
Q Consensus       279 tE~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~  355 (499)
                      ||+++  +...+...   ..+ ...+.++..++|+| ++|+++++|+.  |||+++.....             .   .|
T Consensus       230 tE~~~~~~~~~~~~~---~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~~~~-------------~---~p  287 (422)
T TIGR02155       230 SEVIGPGVAMECVET---QDG-LHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTLTKE-------------A---LP  287 (422)
T ss_pred             hhhcCCceeeccccc---CCC-ceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecCCcc-------------c---cc
Confidence            99852  22222111   111 11223467788999 68999999994  99999532111             1   11


Q ss_pred             CCCCccccccCceeEeecC-c-----eEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEE
Q 010854          356 MYKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV  429 (499)
Q Consensus       356 ~~~~~~~~~TGD~~~~~~~-G-----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~  429 (499)
                          ..||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||+++. .+|+|...+.+........ +.+.
T Consensus       288 ----~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~~  361 (422)
T TIGR02155       288 ----VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DELT  361 (422)
T ss_pred             ----eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEEE
Confidence                247999999999876 4     46899999999999999999999999996 8999985555555544333 5677


Q ss_pred             EEEEecCCCC-----CCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHH
Q 010854          430 IFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR  483 (499)
Q Consensus       430 ~~v~~~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~  483 (499)
                      +.|+...+..     .+.+.+.+.+++.+++.+..+.. ..++.+++||+|+ ||++|.
T Consensus       362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             EEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence            7777664332     12234456677777777766431 3344457999988 998763

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-32  Score=287.05  Aligned_cols=362  Identities=22%  Similarity=0.236  Sum_probs=282.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      ++++++|+++++.+++++++++|++++|+.++|+++.++.+.+..++++++++.+++...........+          .
T Consensus       274 ~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~  343 (642)
T COG1020         274 VGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLP----------G  343 (642)
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCC----------c
Confidence            468999999999999999999999999999999999999999999999999999999843210000000          0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                          ....+......   ... .......+++.++++|||||||.||||..+|+++.+.+.+..
T Consensus       344 --------------------~~~~~~~~~~~---~~~-~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~  399 (642)
T COG1020         344 --------------------LALDDALSEIP---DTD-PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG  399 (642)
T ss_pred             --------------------cccccccccCC---ccC-cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHH
Confidence                                00000000000   000 002234568999999999999999999999999999888877


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCC--ChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+.+...|+++...++.+..+...++.++..|+++++.+...  ++..+.+.++++++|++..+|.++..++.......
T Consensus       400 ~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~  479 (642)
T COG1020         400 ARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD  479 (642)
T ss_pred             HhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc
Confidence            7799999999999999999999999999999999999997533  57789999999999999999999999887622221


Q ss_pred             --ccccceeEEEeecCCCChhhHHHHHhhcc-cCceeccccccceeeeeecCCCCCCCc-cccccccCCCceEEEECCCC
Q 010854          240 --LDWTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 --~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~d~~g  315 (499)
                        ...+.++.++++||.++..+...+..... ...+.+.||.||+.............. ..++|.|+++..++|+|+.+
T Consensus       480 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~  559 (642)
T COG1020         480 LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGL  559 (642)
T ss_pred             ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCC
Confidence              22335999999999999998887765544 467999999999554332222111111 46899999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.|..  ||+++ +.+...+  +...++.+...|...      .+|+|||++++..+|.+.++||.|+++|++|.+|
T Consensus       560 ~~~p~gv~--gel~i~g~~~a~g--y~~~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Ri  629 (642)
T COG1020         560 RPLPLGVP--GELYIAGLGLALG--YLNRPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRI  629 (642)
T ss_pred             CcCCCCCC--eeeEECCcchhhh--hcCChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEec
Confidence            99999995  99999 4333332  445555555555432      3899999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCc
Q 010854          395 SSVEIERVCDQADE  408 (499)
Q Consensus       395 ~~~~iE~~l~~~~~  408 (499)
                      .+.|||..+. .+|
T Consensus       630 el~eie~~l~-~~~  642 (642)
T COG1020         630 ELGEIEAALA-EQP  642 (642)
T ss_pred             CcHHHHHHHh-cCC
Confidence            9999999996 654

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.97  E-value=3.7e-30  Score=255.67  Aligned_cols=330  Identities=15%  Similarity=0.080  Sum_probs=223.8

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEe
Q 010854          124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLAL  199 (499)
Q Consensus       124 ~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~  199 (499)
                      ..+.++++.+.+||||||.||++.+||.++.........   ..+++++|+++...+..+..+... .+++...|++++.
T Consensus        82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            345678999999999999999999999987765544332   347899999998888887666544 5666788888764


Q ss_pred             cCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc--cccceeEEEeecCCCChhhHHHHHhhcccCceecccc
Q 010854          200 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG  277 (499)
Q Consensus       200 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~--~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg  277 (499)
                      .. .  ....++.|+.+++|.+.++|+.+..|++.....+.  ...++|.++++||+++++..+.+.+.+ ++++++.||
T Consensus       162 ~~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG  237 (445)
T TIGR03335       162 EG-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYG  237 (445)
T ss_pred             CC-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCC
Confidence            43 2  24568999999999999999988887765433332  236899999999999999888887655 799999999


Q ss_pred             ccceeeeeecCCCCCCCccccccccCCCceEEEECC-CCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCC
Q 010854          278 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM  356 (499)
Q Consensus       278 ~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~-~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (499)
                      +||++.. ..+.. .    .....+.+.+.++|+|+ ++.++++|+  .|||+++..+...            .-.++|+
T Consensus       238 ~TE~~~~-~~c~~-~----~g~h~~~d~~~vEIvDp~~~~~vp~Ge--~GELvvT~L~~~~------------~r~~~Pl  297 (445)
T TIGR03335       238 STEGTMC-GECQA-V----AGLHVPEDLVHLDVYDPRHQRFLPDGE--CGRIVLTTLLKPG------------ERCGSLL  297 (445)
T ss_pred             hhhhhhe-EEecC-C----CCccccCCceEEEEEcCCCCCCCcCCC--ceEEEEEecCCCC------------ccCCceE
Confidence            9998632 22211 1    11233446688999995 567799999  5999996543210            0013566


Q ss_pred             CCCccccccCceeEee--cC---c----eEEEecccCCeeeeCceeechHHHHHHHhhc---CccceeeeEEEeCCCCCC
Q 010854          357 YKGMCLRRHGDIIKRT--VG---G----YIIVQGRADDTMNLGGIKTSSVEIERVCDQA---DESILETAAISVSPAGGG  424 (499)
Q Consensus       357 ~~~~~~~~TGD~~~~~--~~---G----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~---~~~v~~~~v~~~~~~~~~  424 (499)
                      ++    |+|||++++.  +.   |    ++...||.||+++++|.+|+|.+||++|. .   .+++...+-+.+.....+
T Consensus       298 iR----YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~~~  372 (445)
T TIGR03335       298 IN----YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEEEG  372 (445)
T ss_pred             EE----eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCCCC
Confidence            66    8999999973  22   2    24456999999999999999999999997 6   355543343333332222


Q ss_pred             ceEEEEEEEecCCCCCCHHHHHHHHHHH----H---HhhcCCceeeeEEEEc--CCCCCCC-CcHHHH
Q 010854          425 PEVLVIFVVLKKGFTSQPDKLKMIFSKA----I---QSKLNPLFKVSLVKVV--PEFPRTA-SNKLLR  482 (499)
Q Consensus       425 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~----~---~~~l~~~~~p~~~~~~--~~iP~t~-~GKv~r  482 (499)
                      ...+...|...+....+.+++.+.+.+.    +   ...+........+.++  .++||++ .||..|
T Consensus       373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       373 EITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             CceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            2455555666554333344544444443    1   1112222222344455  4799984 688765

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=4.2e-30  Score=264.76  Aligned_cols=453  Identities=17%  Similarity=0.112  Sum_probs=285.5

Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCc
Q 010854            3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK   82 (499)
Q Consensus         3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (499)
                      .+|+.|++++..+.+++++.+++|++|..+++++|.++.-+....+....  ....+.. .+-....+.......     
T Consensus        92 ~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia--~~~~s~~-~~i~~~l~i~~~~~~-----  163 (1032)
T KOG1178|consen   92 LRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIA--HFLTSVE-LEIVRRLNIIDILLN-----  163 (1032)
T ss_pred             ccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhh--hhheecc-ceehhhhhhHHHHhh-----
Confidence            47899999999999999999999999999999999999111111111000  0000000 000000011110000     


Q ss_pred             eEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce
Q 010854           83 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA  162 (499)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~  162 (499)
                             +...+.......-.+..+....      ........-+|..+.+.||||+||.||+|..+|..+++...|...
T Consensus       164 -------~~~~~~sv~~~~~~f~~~~~~~------~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~  230 (1032)
T KOG1178|consen  164 -------SLFPKLSVETIADSFQMVLHNE------DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFT  230 (1032)
T ss_pred             -------ccccccchhhccchhhhhhccC------CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccc
Confidence                   0000000001111111111111      111112344577899999999999999999999999999999999


Q ss_pred             eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCC--hhHHHHHHHHhCCeEEecchHHHHHHHccCCCC-
Q 010854          163 HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-  238 (499)
Q Consensus       163 ~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~--~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~-  238 (499)
                      .+....++++......+.....-. ....++.|+.+..+.+...  +..+.+.+++++++.++.+|++.+.++...... 
T Consensus       231 ~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~  310 (1032)
T KOG1178|consen  231 TFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSL  310 (1032)
T ss_pred             cCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcch
Confidence            998888888744444433333333 4445555555555543332  678999999999999999999988776654331 


Q ss_pred             ------------cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC---CccccccccC
Q 010854          239 ------------GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP---QAFGAFSTAT  303 (499)
Q Consensus       239 ------------~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~---~~~~~~g~~~  303 (499)
                                  ...-+.|+....+||+....+...+...+.-.-+..-|+.++.........-...   .....+..+.
T Consensus       311 ~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p  390 (1032)
T KOG1178|consen  311 PLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVP  390 (1032)
T ss_pred             hhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEecc
Confidence                        0112368999999999877776644333322222234777775543321111000   0001111111


Q ss_pred             -------CCceEEEECCCCCCCCCCCCcceeeEecccccccccc---cccccc--cchhhcCCCCCCCccccccCceeEe
Q 010854          304 -------MTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDR---LLNADH--EEVYFRGMPMYKGMCLRRHGDIIKR  371 (499)
Q Consensus       304 -------~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~TGD~~~~  371 (499)
                             +....++....|.+.+.++   |..+++...+.....   +..++.  +..++.   ....+++|+|||+|+.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~~~~r~y~tgD~gr~  464 (1032)
T KOG1178|consen  391 KFDSIIGSLTVLESLYRAGGEGEGGV---GKGCLGAEQNLSSWVVDGYSTPENFLPNFLTV---DGVKARIYRTGDNGRS  464 (1032)
T ss_pred             chhhccCCCcceeeeeccCcccCCcc---cceeecccccccceeeccccchhhcCCccccc---ccchhhccccccccee
Confidence                   1223344444444544444   333432222221111   111111  111111   0123568999999999


Q ss_pred             ecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHH
Q 010854          372 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK  451 (499)
Q Consensus       372 ~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~  451 (499)
                      .++|.+.+.||.|++||.+|.++...+|+.++. .||.|.++++....+...+ +.+++||+...+..   ......|+.
T Consensus       465 l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~~~~---~~~~~~i~~  539 (1032)
T KOG1178|consen  465 LKNGGLEISGRADRQIKDRGVRIELGELNTVVE-VHPDVKEAITLARENSTVG-QTLLAFVVERGGSK---SVLIRDIRN  539 (1032)
T ss_pred             ecCCCEEEEEeccceEEEccEEEehhhhchhhc-cCcchhhhheeeeeccccC-ceEEEEEeccCCCC---chhHHHHHH
Confidence            999999999999999999999999999999996 7899999999999988777 89999999886543   333667888


Q ss_pred             HHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHH
Q 010854          452 AIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD  487 (499)
Q Consensus       452 ~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~  487 (499)
                      +++++|+.|+.|..+++++++|+|++||||+++|.+
T Consensus       540 ~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~  575 (1032)
T KOG1178|consen  540 YLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE  575 (1032)
T ss_pred             hhcccccceecceEEEEhhhCCcCCCCCcChhhhhh
Confidence            899999999999999999999999999999999998

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=236.66  Aligned_cols=467  Identities=15%  Similarity=0.134  Sum_probs=311.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCC------CHHHHHHHhhcCCeeEEEecccccccCccccchhhh
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF------AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV   75 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   75 (499)
                      +++||+|+++.++++|++++++||+.+|.+++|+.|..      ....+..+++.+++++|+++......++..+.....
T Consensus       824 lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~  903 (1363)
T KOG3628|consen  824 LKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHV  903 (1363)
T ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHh
Confidence            78999999999999999999999999999999999854      346788999999999999998654333333322222


Q ss_pred             hhcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           76 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      .++.-+...+++.           -..++..-.+....  ......+...+++.+|++-+.--++|.-.++.++|.++++
T Consensus       904 ~~s~~p~i~~~~~-----------~~~t~~k~~~~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla  970 (1363)
T KOG3628|consen  904 DQSAIPLILVLPK-----------LPETIRKRKKNIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLA  970 (1363)
T ss_pred             hhhcchhhhcccc-----------cchhhhhhhhhhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHH
Confidence            2222222222211           01112111111111  1222334446678999999999999999999999999999


Q ss_pred             HhhhcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC---ChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          156 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       156 ~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      .+......+.+.+...++...+.+...|+.. ++..++.|.+.+++++..   ++..|++.|+++++.-++.+-..++.+
T Consensus       971 ~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c 1050 (1363)
T KOG3628|consen  971 FCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLC 1050 (1363)
T ss_pred             HHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHH
Confidence            9999999999999999999999999889887 899999999988887532   578899999999999999999999988


Q ss_pred             HccCCCCccccccee-----EEEe-ecCCCChhhHHHHHhhcc--c---Cceecc-------------ccccceeeeeec
Q 010854          232 RNTNCLEGLDWTKIR-----SFAS-TGETSNVDDDLWLSSKAW--Y---NAIIES-------------CGGTELSSAYIQ  287 (499)
Q Consensus       232 ~~~~~~~~~~l~~l~-----~i~~-~G~~l~~~~~~~~~~~~~--~---~~i~~~-------------yg~tE~~~~~~~  287 (499)
                      .+....+..+++...     .+++ .-++....+..-+.+.+.  +   ..+...             |...|-...+..
T Consensus      1051 ~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D 1130 (1363)
T KOG3628|consen 1051 QKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLD 1130 (1363)
T ss_pred             HhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeec
Confidence            876554433332111     2222 233322333332322221  1   112223             333332222221


Q ss_pred             CCCCCCCccc-------------cccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhc-
Q 010854          288 GSLLQPQAFG-------------AFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR-  352 (499)
Q Consensus       288 ~~~~~~~~~~-------------~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~-  352 (499)
                      ..........             --|...+++++.|++ ++..||..|+  .||||+....-.....+...+.....|. 
T Consensus      1131 ~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge--~GEIW~~S~hnA~~~~~~~d~~~~~~fn~ 1208 (1363)
T KOG3628|consen 1131 ARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE--LGEIWVNSAHNASCSFTIGDELRSNHFNA 1208 (1363)
T ss_pred             hhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC--cceEEeccccccccccccCchhhhhhhhh
Confidence            1111111111             226778899999999 8888999998  6999993221111111111111111111 


Q ss_pred             --CCCCCCCccccccCceeEee------cC----ceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCC
Q 010854          353 --GMPMYKGMCLRRHGDIIKRT------VG----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP  420 (499)
Q Consensus       353 --~~~~~~~~~~~~TGD~~~~~------~~----G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~  420 (499)
                        ......+..|-||||+|+..      .+    ..||++|-.++.+-++|.+.+|.+||..+...||.|.+|+|+... 
T Consensus      1209 rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~- 1287 (1363)
T KOG3628|consen 1209 RLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT- 1287 (1363)
T ss_pred             hccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC-
Confidence              11223366799999999973      22    358999999999999999999999999998889999999998754 


Q ss_pred             CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee-eEEEEcC--CCCCCCCcHHHHHHHHHHH-Hhhhh
Q 010854          421 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVP--EFPRTASNKLLRRVLRDQI-KHELS  494 (499)
Q Consensus       421 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p-~~~~~~~--~iP~t~~GKv~r~~l~~~~-~~~~~  494 (499)
                           ..++.++....  +....+|.-.+   ++..|..|..+ ..+.||+  -+|+++.|..+|..+++.+ .++++
T Consensus      1288 -----glvVvviE~~g--q~~~~~LvPlI---v~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~ 1355 (1363)
T KOG3628|consen 1288 -----GLVVVVIECHG--QQELADLVPLI---VNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLD 1355 (1363)
T ss_pred             -----CeEEEEEEecC--chhHhhhhHHH---HHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccc
Confidence                 55565555543  22333333332   45677888888 6677786  6999999999999987754 44443

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.95  E-value=5.2e-26  Score=214.19  Aligned_cols=324  Identities=23%  Similarity=0.228  Sum_probs=234.9

Q ss_pred             CCCCCCCeEEEEecCCCCCCCceEEecchhhH---HHhhhcceeccCcCCcEEEeecCcc-ccchhhhhhhhhccCcEEE
Q 010854          123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLA  198 (499)
Q Consensus       123 ~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~---~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~~~~l~~G~~~~  198 (499)
                      ...+.+++..+--||||||.|+.+.+++..+.   ..++......+...+|++..+.... +..|+..-+++-..|++++
T Consensus        85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            34556778889999999999999999987644   4444444556889999987666543 3334444556666888887


Q ss_pred             ecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc--ccccceeEEEeecCCCChhhHHHHHhhcccCceeccc
Q 010854          199 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC  276 (499)
Q Consensus       199 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~y  276 (499)
                      -..+ -..+..+++++.+++|++.++|+.+..|++...+.+  ..-.++|.+++|+|+++++.++.+..++ +++.++.|
T Consensus       165 p~~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diY  242 (438)
T COG1541         165 PISG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIY  242 (438)
T ss_pred             ccCC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeecc
Confidence            6653 355889999999999999999999999998877665  2235899999999999999999998776 89999999


Q ss_pred             cccceeeee-ecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCC
Q 010854          277 GGTELSSAY-IQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM  354 (499)
Q Consensus       277 g~tE~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~  354 (499)
                      |+||..+.. ..|....     ......+..-++|+| ++|+++++|+.  ||++++.....                ++
T Consensus       243 GltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~~----------------~~  299 (438)
T COG1541         243 GLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTKE----------------GM  299 (438)
T ss_pred             ccccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEecccc----------------Cc
Confidence            999987652 2222211     122345778899999 99999999995  99999644321                35


Q ss_pred             CCCCCccccccCceeEeecC----ce-----EEEecccCCeeeeCceeechHHHHHHHhhcCccce-eeeEEEeCCCCCC
Q 010854          355 PMYKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGG  424 (499)
Q Consensus       355 ~~~~~~~~~~TGD~~~~~~~----G~-----l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~-~~~v~~~~~~~~~  424 (499)
                      |+++    |+|||+..+.++    |.     ..+.||.+|++++.|.+|+|..||++|. +.+++. +..++... ....
T Consensus       300 PlIR----YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~-~~~~  373 (438)
T COG1541         300 PLIR----YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR-NGGL  373 (438)
T ss_pred             ceEE----EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec-CCCC
Confidence            6666    999999998763    33     3489999999999999999999999997 889888 55555555 3333


Q ss_pred             ceEEEEEEEecCCCCCCHH--HHHHHHHHHHHhhcCCceee-eEEEEcCCCCCCCCcHHH
Q 010854          425 PEVLVIFVVLKKGFTSQPD--KLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLL  481 (499)
Q Consensus       425 ~~~~~~~v~~~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p-~~~~~~~~iP~t~~GKv~  481 (499)
                       ..+.+-|++.+.......  .+.+.+.+.+...+.  ..+ ..++.+.++||+.. |..
T Consensus       374 -d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~v~~v~~g~l~r~~~-K~k  429 (438)
T COG1541         374 -DELTVRVELENEAEELEDERRLAKKLIKNIKSELG--VRVEVELVEPGELPRTEG-KAK  429 (438)
T ss_pred             -ceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcC--CceEEEEEeccceecccC-cee
Confidence             777888888765221222  222344444443333  222 34444569999965 543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=1.2e-21  Score=185.53  Aligned_cols=121  Identities=16%  Similarity=0.185  Sum_probs=105.7

Q ss_pred             CccccccCceeEe-ecCceEEEecccCCeeeeCc---eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEe
Q 010854          359 GMCLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL  434 (499)
Q Consensus       359 ~~~~~~TGD~~~~-~~~G~l~~~gR~~d~i~~~G---~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~  434 (499)
                      .++||+|||+|++ |++|+|++.||.+     +|   ++|+|. ||++|. +||+|.+++|++++++.+| +.++|+|++
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~  278 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEA  278 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEE
Confidence            5689999999998 7999999999998     78   799999 999996 9999999999999999998 999999997


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          435 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       435 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      ..  ..+.+++.++    ++.+|+. +.|.+++++++||+|++||++|+.|++++.+..+
T Consensus       279 ~~--~~~~~el~~~----l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~  331 (365)
T PRK09188        279 EL--PADEKSLRAR----LAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQID  331 (365)
T ss_pred             CC--CCCHHHHHHH----HHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccc
Confidence            63  3345555555    5567888 9999999999999999999999999998765543

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.81  E-value=1.4e-18  Score=155.95  Aligned_cols=174  Identities=17%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|+|             ++++++++++++......           .+.
T Consensus        50 v~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----------~~~  105 (227)
T TIGR03089        50 AEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----------GSG  105 (227)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----------cCC
Confidence            68999999999999999999999999999999995             789999999886542211           111


Q ss_pred             ceEEeccc--CCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCC-CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           82 KAIVLPAI--GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        82 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      ....+...  ..........+..++.+.+.....     ...+. ...++|++.++||||+         +|+++.... 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~-  170 (227)
T TIGR03089       106 EVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD-----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA-  170 (227)
T ss_pred             ceEEEeccccccCCCCCCCCcccchhhhhhccCC-----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH-
Confidence            22222110  000000112232455554442111     11111 3456899999999986         566655544 


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCe
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVT  219 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t  219 (499)
                         ..++++++|+++ .+|++|.+|+.. ++.+++.|+++++.+ .++++.+++.|+++|+|
T Consensus       171 ---~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~-rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 ---RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVT-HPDPARLDQIAETERVT  227 (227)
T ss_pred             ---hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence               456789999999 999999999975 999999999999996 78999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.80  E-value=2e-17  Score=160.65  Aligned_cols=246  Identities=17%  Similarity=0.080  Sum_probs=161.4

Q ss_pred             eEEEEecCCCCCCCceEEecchhhHHHhhhc---ceeccCcCCcEEEeecCccccchhhhhhhhhccCcE-EEecCCCCC
Q 010854          130 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL  205 (499)
Q Consensus       130 ~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~-~~~~~~~~~  205 (499)
                      -..+..||||||.|-.+..+........+..   +...++..++++...+.   ..+  .+...+..... +-..+-..+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~--~ly~~~~~~~~~~~~~~l~~~  175 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADN--NLYQSVNNRWISLDFFDLLAP  175 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cCh--hHHHHHHhccceeeecCCCcC
Confidence            4567789999999999999987543332222   12235566666554421   111  11111211111 222222234


Q ss_pred             hhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeee
Q 010854          206 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY  285 (499)
Q Consensus       206 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  285 (499)
                      .+.+++.|++++|+++.++|+.+..|++.....+.+ ..++.++++||.++++..+.+++.+ ++++++.||+|| |.++
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la  252 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA  252 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE
Confidence            688999999999999999999999999876554444 3789999999999998888887666 799999999999 5555


Q ss_pred             ecCCCCCCCccccccccCCCceEE--EECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCcccc
Q 010854          286 IQGSLLQPQAFGAFSTATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR  363 (499)
Q Consensus       286 ~~~~~~~~~~~~~~g~~~~~~~~~--i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (499)
                      ..+...      ....-.+.+-++  ++|+.++         +..+|+..+.                ..+|.++    |
T Consensus       253 ~eC~~g------~lHl~ed~~~vE~~ivD~~~~---------~~~ViT~L~n----------------~~~PlIR----Y  297 (430)
T TIGR02304       253 STCRCG------TLHLNEDLVHIEKQYLDEHKR---------FVPIITDFTR----------------TTQPIVR----Y  297 (430)
T ss_pred             EecCCC------CEEEccccEEEEeeEECCCCc---------eEEEEecCCC----------------ccceEEe----e
Confidence            444321      122223344455  7886653         2334432211                2366666    9


Q ss_pred             ccCceeEeecC----ce----E-EEecccCCeeee---Cc--eeechHHHHHHHhhcCccceeeeEEEe
Q 010854          364 RHGDIIKRTVG----GY----I-IVQGRADDTMNL---GG--IKTSSVEIERVCDQADESILETAAISV  418 (499)
Q Consensus       364 ~TGD~~~~~~~----G~----l-~~~gR~~d~i~~---~G--~~v~~~~iE~~l~~~~~~v~~~~v~~~  418 (499)
                      +|||++.+.++    |.    + .+.||.+|+++.   +|  .+++|..+++++....++|.+..++..
T Consensus       298 rtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~  366 (430)
T TIGR02304       298 RLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT  366 (430)
T ss_pred             eCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence            99999987543    32    3 388999999985   34  456999999886546789988887753

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.66  E-value=1.3e-14  Score=146.85  Aligned_cols=445  Identities=13%  Similarity=0.091  Sum_probs=278.9

Q ss_pred             CCCCCEEEEEcCCc--HHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcC
Q 010854            2 FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   79 (499)
                      +.++|+|.++...+  ++++++.++|...|.+.+|+.+..+.+++...++....+++++.....+          +..+.
T Consensus       147 l~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r----------~~~~~  216 (1363)
T KOG3628|consen  147 LKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGER----------AFIND  216 (1363)
T ss_pred             CCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHH----------Hhhhc
Confidence            57899999999887  8999999999999999999999999999999999999999998775321          11100


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCC-----CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP-----RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      -                   ...++...++......     ...........-. ..+|-||.+++|.--|++.+|. +.
T Consensus       217 ~-------------------~~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~  275 (1363)
T KOG3628|consen  217 N-------------------SPVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FL  275 (1363)
T ss_pred             c-------------------CcccHHHHHHhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cc
Confidence            0                   0111111111000000     0011111122223 8899999999999999999997 43


Q ss_pred             HHhh---------------hc-----ceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC--ChhHHHH
Q 010854          155 RCTA---------------EG-----WAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP--LERSFGK  211 (499)
Q Consensus       155 ~~~~---------------~~-----~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~--~~~~~~~  211 (499)
                      .+++               ++     ...++....+.++....+.-..|++. ++.++++|.+.+.++...  .+..+.+
T Consensus       276 ~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~  355 (1363)
T KOG3628|consen  276 PQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIAN  355 (1363)
T ss_pred             cchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhh
Confidence            3321               11     11234455677777777777778776 999999999999998643  4678999


Q ss_pred             HHHHhCCeEEecchHHHHHHHccCC-----------CCcccccceeEEEeecCCCChhhHHHHHhhcc---cC-------
Q 010854          212 FVQDAGVTVLGTVPSLVKAWRNTNC-----------LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW---YN-------  270 (499)
Q Consensus       212 ~i~~~~~t~l~~~P~~l~~l~~~~~-----------~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~---~~-------  270 (499)
                      .+.+++++++..--..+++......           .+-.+++++|.+++..+.+..+..+....+.-   ++       
T Consensus       356 l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~  435 (1363)
T KOG3628|consen  356 LITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVD  435 (1363)
T ss_pred             hhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceee
Confidence            9999999998877655554433211           12256899999999999888776554332211   11       


Q ss_pred             -----------ceeccccccceeeeeecCCCCC-----------------------------CCccccccccCCC-ceEE
Q 010854          271 -----------AIIESCGGTELSSAYIQGSLLQ-----------------------------PQAFGAFSTATMT-AGLV  309 (499)
Q Consensus       271 -----------~i~~~yg~tE~~~~~~~~~~~~-----------------------------~~~~~~~g~~~~~-~~~~  309 (499)
                                 -....-+++|.+....-.+...                             ......+|...|| ..+.
T Consensus       436 ~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~  515 (1363)
T KOG3628|consen  436 FPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLA  515 (1363)
T ss_pred             chhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEE
Confidence                       0111112233332221111100                             0011223333444 3445


Q ss_pred             EEC-CCCCCCCCCCCcceeeEec-----ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc
Q 010854          310 ILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA  383 (499)
Q Consensus       310 i~d-~~g~~~~~g~~~~Gei~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~  383 (499)
                      +++ ++.+.|.+++  +|||||.     ..+++....+.+.+....++..++...+..|.|||=+|++. +|.++++|-.
T Consensus       516 vv~~~t~~LC~~~e--VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k  592 (1363)
T KOG3628|consen  516 VVNPDTNQLCKTDE--VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLK  592 (1363)
T ss_pred             EeCCCcccccccCc--ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEec
Confidence            666 7778888998  7999992     34555555666666667777777777778899999999995 5556666666


Q ss_pred             CCeee-eCceeechHHHH----------HHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHH
Q 010854          384 DDTMN-LGGIKTSSVEIE----------RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA  452 (499)
Q Consensus       384 ~d~i~-~~G~~v~~~~iE----------~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~  452 (499)
                      +|.+. ..|...+..+|-          -+. +..+.|-++.++-      . ++++..++-++..  .+++-.++..+-
T Consensus       593 ~d~llq~~~~~h~~d~iv~thya~~~iktV~-R~v~~VF~~saf~------~-E~~~Vv~~esP~a--~e~~~~q~~~~v  662 (1363)
T KOG3628|consen  593 EDGLLQVSGWRHNADDIVATHYAVELIKTVM-RGVIAVFDVSAFE------D-EHIVVVVLESPDA--TEENSFQWMSRV  662 (1363)
T ss_pred             hhhhhhhhhhhhhhhhhHhhHHHHHHHHHHH-hccceEEEEeeee------c-ceEEEEEEeCcch--hhhhhhhHHHHH
Confidence            66665 567665544333          333 3566676776663      1 6655555444433  344444444443


Q ss_pred             HHhhcCCceeeeE----EEEcCCCCCCCCcHHHHHHHHHHHHh
Q 010854          453 IQSKLNPLFKVSL----VKVVPEFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       453 ~~~~l~~~~~p~~----~~~~~~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      ++ .+...+....    ++.-+.+|||+.|.|.-..++++|.+
T Consensus       663 ~q-~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  663 FQ-ALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             HH-HHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence            32 2333333322    22236899999999999999999875

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.26  E-value=1.3e-11  Score=89.30  Aligned_cols=70  Identities=34%  Similarity=0.428  Sum_probs=57.4

Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee--eEEEEcCC-CCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--SLVKVVPE-FPR  474 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p--~~~~~~~~-iP~  474 (499)
                      |||+++. +||+|.+++|++.+++.+| +.+++++++      +.    +.++++++++|+.|+.|  ..++.+++ ||+
T Consensus         1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~------~~----~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~   68 (73)
T PF13193_consen    1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL------DE----EEIRDHLRDKLPPYMVPRRIRFVRLDEELPR   68 (73)
T ss_dssp             HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE------HH----HHHHHHHHHHS-GGGS-SEEEEEEESSSEEB
T ss_pred             CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe------ee----cccccchhhhCCCcceeeEEEEccccCcCCC
Confidence            7999996 9999999999999998888 999999998      22    44555567789999999  56666677 999


Q ss_pred             CCCcH
Q 010854          475 TASNK  479 (499)
Q Consensus       475 t~~GK  479 (499)
                      |++||
T Consensus        69 t~~GK   73 (73)
T PF13193_consen   69 TPSGK   73 (73)
T ss_dssp             ETTSS
T ss_pred             CCCCC
Confidence            99998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.04  E-value=9.3e-09  Score=98.12  Aligned_cols=228  Identities=17%  Similarity=0.046  Sum_probs=130.1

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCc--EEEeecCccc---cch--hhhhhhhhccC
Q 010854          125 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGD--VYCWPTNLGW---VMG--PVILFSSFLNG  194 (499)
Q Consensus       125 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~--~~l~~~p~~~---~~~--~~~~~~~l~~G  194 (499)
                      ...+++...+.||||||.|.-+.+.+..+..+......   .+......  .++...|-..   .++  ....+..+..+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            34567888999999999986666665544444322222   12111111  2222223221   111  12233444555


Q ss_pred             cEEEecCCCCChhHHHHHH----HHhCCeEEecchHHHHHHHccCCCCcc--ccc-ceeEEEeecC------CCChh-hH
Q 010854          195 ATLALYQGSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLEGL--DWT-KIRSFASTGE------TSNVD-DD  260 (499)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~i----~~~~~t~l~~~P~~l~~l~~~~~~~~~--~l~-~l~~i~~~G~------~l~~~-~~  260 (499)
                      ....+-....+.+.+...+    .+.++..++++|.++..++...++.+.  .++ ..+.+-.||-      .++.+ ..
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            5544433334555555444    456788999999987776655443433  333 4555666653      35444 44


Q ss_pred             HHHHhhccc---CceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEe-ccccc
Q 010854          261 LWLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-FPLYL  335 (499)
Q Consensus       261 ~~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v-~~~~~  335 (499)
                      +.+.+.+..   ..+++.||+||....++.+.....       ...|.  +.|.| .+.++++.|+.  |-|.+ .+...
T Consensus       246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~-------~~p~w--V~iRDp~tl~~~~~Ge~--Gli~vidl~~~  314 (365)
T PF04443_consen  246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF-------HVPPW--VIIRDPETLEPLPPGET--GLIQVIDLANT  314 (365)
T ss_pred             HHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc-------cCCCe--EEEECCCCCcCCCCCCe--eEEEEEccccc
Confidence            455555522   369999999998876665533222       12234  55667 77899999984  88888 33222


Q ss_pred             ccccccccccccchhhcCCCCCCCccccccCceeEeecC--------ceEEEecccCC
Q 010854          336 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADD  385 (499)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------G~l~~~gR~~d  385 (499)
                      +.+                      +...|.|+|.+..+        .++.++||.+.
T Consensus       315 s~p----------------------~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  315 SYP----------------------GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             CCC----------------------cEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            211                      11469999987654        27899999873

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.56  E-value=4.6e-07  Score=91.73  Aligned_cols=165  Identities=17%  Similarity=0.129  Sum_probs=85.7

Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCc-eeccccccceeeeeecCCCCCCCccccccccCC-CceEEEECCCC----
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECG----  315 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~-i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~i~d~~g----  315 (499)
                      |++|+.+.+.+..-...-...+++.+++.. +...|++||+...+... ......   .=.|-. ..+..-+++.+    
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~~~~---~l~~~~~ffEFip~~~~~~~~~  341 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PEDPGY---VLAPDSGFFEFIPVDEDEQNPS  341 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC--E---EE-TTSSEEEEEE-STT-----
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCCCce---EeecCCeEEEEEeccCCccccc
Confidence            688996665554444566677777776755 44699999965433322 111111   111111 22333344322    


Q ss_pred             ---CC-----CCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeec--Cc--eEEEeccc
Q 010854          316 ---VP-----YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV--GG--YIIVQGRA  383 (499)
Q Consensus       316 ---~~-----~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~--~G--~l~~~gR~  383 (499)
                         +.     +..|+  .-|++++.. .|             .|+          |+.||+++...  ++  .+.|+||.
T Consensus       342 ~~~~~l~~~ele~G~--~YelviTt~-~G-------------LyR----------Y~iGDvVrv~gf~~~~P~i~F~~R~  395 (528)
T PF03321_consen  342 EQPKTLLLHELEVGE--EYELVITTN-SG-------------LYR----------YRIGDVVRVTGFYNQTPRIEFVGRR  395 (528)
T ss_dssp             --SSSEEGGG--TT---EEEEEEEST-TS--------------SS----------EEECEEEEEEEEETTEEEEEEEEET
T ss_pred             CCCceecHHHhcCCC--eEEEEEecc-cc-------------eee----------eecCCEEEEeeccCCCcEEEEeccC
Confidence               22     22333  144555221 11             333          89999999853  33  78999999


Q ss_pred             CCeeeeCceeechHHHHHHHhhc----CccceeeeEEEeCCCCCCceEEEEEEEecCC
Q 010854          384 DDTMNLGGIKTSSVEIERVCDQA----DESILETAAISVSPAGGGPEVLVIFVVLKKG  437 (499)
Q Consensus       384 ~d~i~~~G~~v~~~~iE~~l~~~----~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~  437 (499)
                      +.++.+.|++++-.+|++++.+.    .-.+.+..+......... ..-+.++.+...
T Consensus       396 ~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~~~~  452 (528)
T PF03321_consen  396 GQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWELEGE  452 (528)
T ss_dssp             TEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEECS-
T ss_pred             CceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEeCCC
Confidence            99999999999999999998744    233556666554222222 455666666643

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.22  E-value=0.00019  Score=73.19  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             cccCceeEeec----CceEEEecccCCeeeeCceeechHHHHHHHhh
Q 010854          363 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  405 (499)
Q Consensus       363 ~~TGD~~~~~~----~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  405 (499)
                      |+.||.+++..    --.+.|+||.+.++.+.|++++-++++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            89999999853    34689999999999999999999999998864

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.11  E-value=1.1e-05  Score=61.46  Aligned_cols=87  Identities=22%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCceee-eEE
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKV-SLV  466 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~~~p-~~~  466 (499)
                      |.||||..||+++. .+|++...+.+.+...... +.+...|...++...   +.+++.+.+.+.+++.+.  ..| ..+
T Consensus         1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v~~~~~~-D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg--v~~~V~l   76 (96)
T PF14535_consen    1 GVNVFPSQIEEVLR-EFPEVSPEYQIVVTREGGL-DELTVRVELRPGFSDDAEDLEALAERIAERLKERLG--VRPEVEL   76 (96)
T ss_dssp             TEEE-HHHHHHHHC-TSTTEEEEEEEEEEEETTE-EEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS--S-EEEEE
T ss_pred             CcEECHHHHHHHHH-hCcCCCCcEEEEEEcCCCC-cEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC--ceEEEEE
Confidence            78999999999996 8999995555555544444 778888888875532   345677778888877776  334 333


Q ss_pred             EEcCCCCCCCCcHHHH
Q 010854          467 KVVPEFPRTASNKLLR  482 (499)
Q Consensus       467 ~~~~~iP~t~~GKv~r  482 (499)
                      +-..+|||+ .||..|
T Consensus        77 v~~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   77 VPPGTLPRS-EGKAKR   91 (96)
T ss_dssp             E-TT-S----SSSS-S
T ss_pred             ECCCCccCC-CCcceE
Confidence            444589998 678654

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.98  E-value=0.0022  Score=65.10  Aligned_cols=43  Identities=21%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             cccCceeEee----cCceEEEecccCCeeeeCceeechHHHHHHHhh
Q 010854          363 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  405 (499)
Q Consensus       363 ~~TGD~~~~~----~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  405 (499)
                      ||.||+.+..    ....+.|++|.+.+..+.|++.+-.++-.++.+
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence            8999999874    446799999999999999999999999888763

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.95  E-value=0.00095  Score=67.49  Aligned_cols=136  Identities=15%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCCCccccccccCCCc---eEEEECC-CC-
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA---GLVILDE-CG-  315 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~i~d~-~g-  315 (499)
                      |++++.|.+.-..-..+-...++...++..++ ..|++||+...+-..+...+....  ....|+.   |.--+++ ++ 
T Consensus       303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~s--y~L~p~~~yFEFip~~~~~~~  380 (612)
T PLN02620        303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVS--YTLIPTMAYFEFLPVHRNNGV  380 (612)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcccce--eeecCCcEEEEEeeccCcccc
Confidence            67777766654433355556666666677655 599999976554333322222111  1112222   2222221 11 


Q ss_pred             ----------------CC-----CCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEee--
Q 010854          316 ----------------VP-----YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT--  372 (499)
Q Consensus       316 ----------------~~-----~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~--  372 (499)
                                      ++     +..|+  .-|++|+. +.|             .|+          ||.||+.+..  
T Consensus       381 ~~~~~~~~~~~~~~~~~~v~l~ev~~G~--~YelvvTt-~~G-------------LyR----------YrlGDvv~V~Gf  434 (612)
T PLN02620        381 TNSISLPKSLNEKEQQELVDLVDVKLGQ--EYELVVTT-YAG-------------LYR----------YRVGDVLRVAGF  434 (612)
T ss_pred             cccccccccccccccCccccHHHccCCC--eEEEEEEe-cCc-------------eEE----------EecCCEEEEeee
Confidence                            11     22333  24455521 111             343          8999999974  


Q ss_pred             --cCceEEEecccCCeeeeCceeechHHHHHHHhh
Q 010854          373 --VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ  405 (499)
Q Consensus       373 --~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  405 (499)
                        ....+.|++|.+-+..+.|++.+-.++-.++.+
T Consensus       435 ~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        435 KNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN  469 (612)
T ss_pred             cCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence              346799999999999999999999999887753

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=81.53  E-value=6.4  Score=38.92  Aligned_cols=89  Identities=16%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .+|.+|++.        -....+|+..+...+..+.   ...+++.++++....+-+. ..++..++++..|+..+.+++
T Consensus         8 ~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~-~~~~~~~A~~~~G~~~v~l~~   78 (417)
T PF00501_consen    8 YPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSI-EFVVAFLACLRAGAIPVPLDP   78 (417)
T ss_dssp             STTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH-HHHHHHHHHHHTT-EEEEEET
T ss_pred             CCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccc-eeeeeeccccccccccccccc
Confidence            467788766        1245567776655544433   3467889999888777653 334558899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEec
Q 010854          203 SPLERSFGKFVQDAGVTVLGT  223 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~  223 (499)
                      ....+.+...+++.++.++++
T Consensus        79 ~~~~~~~~~~l~~~~~~~ii~   99 (417)
T PF00501_consen   79 SLSEDELRHILRQSGPKVIIT   99 (417)
T ss_dssp             TSSHHHHHHHHHHHTESEEEE
T ss_pred             ccccccccccccccceeEEEE
Confidence            888899999999999999996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	499
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		8e-32
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-31
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-31
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-31
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		5e-31
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		8e-31
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-30
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		1e-20
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		4e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-09
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		3e-09
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		3e-09
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		4e-07
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		9e-07
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-06
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-05
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-05
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		8e-04

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVEKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       +  ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVAKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S  ++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGAIMRRILR 616

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A R+  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R G   PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             KGD +AI MPM   A +  LA    G V   I   F+   +A  +  S ++ + T D 
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADE 188
Query: 62  ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
            +R GR  PL   V  A       +    IVL   G+D+      +DL W+D +      
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
             P +     N  D +  IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y 
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
              ++GWV G   +L+     GAT  +++G P   +  +  Q      V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
           A        +EG D + +R   S GE  N +   W     W     E C   +       
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
           G  +     GA      +A          ++D  G  +P +    G + +   + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
            L  DHE         +K M     GD  +R   GY  + GR DD +N+ G +  + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
                A   I E A + +  A  G + +  +V L  G    P+ L       ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
               ++      P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 217/513 (42%), Gaps = 48/513 (9%)
Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +A+ MPM   A+I  LAI   G +   +   F++  +  R+    +K + T D   
Sbjct: 138 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 197
Query: 64  RGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 118
           RGG+      +    L   P ++ +++    N+  +     +DL W     + +      
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW-----ATEKKKYKT 252
Query: 119 YYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-------LSSIRCTAEGWAHIDLKVG 169
           YY     PVD+   + +L++SG+TG PK +  +        L ++R T       D    
Sbjct: 253 YYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT------FDTHQE 304
Query: 170 DVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 225
           DV+    ++GW+ G   +++   L G    +++G+P   ++ ++   + +  VT     P
Sbjct: 305 DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAP 364
Query: 226 SLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTEL 281
           + ++  +    + +E      +R   S GE    +   W S K   N   I+++   TE 
Sbjct: 365 TALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424
Query: 282 SSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASD 339
            S  +      + P   G+ S        V+LD       +     G + +   +   + 
Sbjct: 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA- 483
Query: 340 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
           R +  +H+      +  Y G      GD   +   GYI + GR DD +N+ G + S+ EI
Sbjct: 484 RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI 541
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG---FTSQPDKLKMIFSK---AI 453
           E    + D  + E A +  +    G + +  FVVLK      T+  D+L+ I       +
Sbjct: 542 EAAIIE-DPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV 599
Query: 454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
           +  + P     L+ +V + P+T S K++RR+LR
Sbjct: 600 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 26/367 (7%)
Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMG 183
           D +   L+SSG+TG+PK    T  +++  TAE +A   L +   DV      L   + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 184 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
             + F   +    + + +    +  F + V+    TV   VP+L      +  L      
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADV 300
Query: 244 KIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTA 302
            IR   S GE   +  ++     A +   I++  G TE+   ++       + +G     
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRP 357
Query: 303 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMC 361
                + + DE G   PD     GEVG   LY+ G S  ++  ++ E   +    + G  
Sbjct: 358 VPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEW 407
Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
           +R  GD   R   G  +  GR+DD + + G   S VE+E V  Q D ++LE A + V   
Sbjct: 408 IRS-GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVVGVD-- 463
Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
            GG      FVVLK+ F    + L       ++ +L P      +  V + P+TA+ K+ 
Sbjct: 464 HGGLVKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 482 RRVLRDQ 488
           R  LR+Q
Sbjct: 523 RFKLREQ 529

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 191/500 (38%), Gaps = 67/500 (13%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
            +KGD +A+ MP +V    ++      G V V I    AA E++  L  S +K       
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 118
Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           ++ G    P+   +   A     V   IG D    L E+  S      +V+     N + 
Sbjct: 119 VIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAERLRSAAADEPAVECGGDDNLF- 174
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGW 180
                      I+++SGTTG PK +  T   S+   A  WA  ID++  D    P  +  
Sbjct: 175 -----------IMYTSGTTGHPKGVVHTH-ESVHSAASSWASTIDVRYRDRLLLPLPMFH 222
Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           V     +  S + G TL         + +   V++  V + G VP+++   R       L
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAEL 281
Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AIIESCGGTELSSAYIQGSLLQP 293
           D    R F + G       +  +   A  N       A+ ESCGG  L        LL  
Sbjct: 282 DAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYALTESCGGGTL--------LLSE 330
Query: 294 QAF---GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 350
            A    G+   ATM   + +  + GV     +   GEV +       SD LL    +E +
Sbjct: 331 DALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVVI------KSDILL----KEYW 377
Query: 351 FRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 408
            R             R GDI +    GY+ ++ R  D +  GG      EIE V      
Sbjct: 378 NRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGV-P 436
Query: 409 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV 468
            + E A I +     G E+    VV  +   S+   ++   ++  + KL    KV   + 
Sbjct: 437 GVSEVAVIGLPDEKWG-EIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPK--KVIFAEA 493
Query: 469 VPEFPRTASNKLLRRVLRDQ 488
           +P  P   + K+L+ VLR+Q
Sbjct: 494 IPRNP---TGKILKTVLREQ 510

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 205/536 (38%), Gaps = 102/536 (19%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD +A+ +P      ++ L  I AG + +       + +I  RL++SKAK I   D 
Sbjct: 96  LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD- 154
Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD--LSWKDFLSSVDYHPRPNY 119
                       +V+      A   P++   + +  +  D  L++K  L+          
Sbjct: 155 ------------EVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS-----TT 197
Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPT 176
           +  V         I F+SGT+G PK    +  SS+   A+   GW    L+  D+    +
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWT--GLQASDIMWTIS 254
Query: 177 NLGWV-------MGPVIL-----------FSSFLNGATLALY-----QGSPL-------- 205
           + GW+       M P  L           F   +   TL+ Y      G+P+        
Sbjct: 255 DTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314
Query: 206 ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 263
           + S  KF        +G   +P  ++ WR      GLD  +      TG T  V   + +
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI 371
Query: 264 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 323
             K  Y     SC   ++     +G++L P   G               + G+     +P
Sbjct: 372 --KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP 412
Query: 324 CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 383
               +G+F  Y+       N D      RG            GD   +   GY    GRA
Sbjct: 413 ----IGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRA 455
Query: 384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-P 442
           DD +N  G +    E+E    +   +++ETA IS SP     EV+  FVVL   F S  P
Sbjct: 456 DDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 443 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSR 498
           ++L     + ++S   P      ++ V   P+T + K+ R  LRD+ + ++S ++R
Sbjct: 514 EQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 205/536 (38%), Gaps = 102/536 (19%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD +A+ +P      ++ L  I AG + +       + +I  RL++SKAK I   D 
Sbjct: 96  LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD- 154
Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD--LSWKDFLSSVDYHPRPNY 119
                       +V+      A   P++   + +  +  D  L++K  L+          
Sbjct: 155 ------------EVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS-----TT 197
Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPT 176
           +  V         I F+SGT+G PK    +  SS+   A+   GW    L+  D+    +
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWT--GLQASDIMWTIS 254
Query: 177 NLGWV-------MGPVIL-----------FSSFLNGATLALY-----QGSPL-------- 205
           + GW+       M P  L           F   +   TL+ Y      G+P+        
Sbjct: 255 DTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314
Query: 206 ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 263
           + S  KF        +G   +P  ++ WR      GLD  +      TG T  V   + +
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI 371
Query: 264 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 323
             K  Y     SC   ++     +G++L P   G               + G+     +P
Sbjct: 372 --KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP 412
Query: 324 CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 383
               +G+F  Y+       N D      RG            GD   +   GY    GRA
Sbjct: 413 ----IGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRA 455
Query: 384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-P 442
           DD +N  G +    E+E    +   +++ETA IS SP     EV+  FVVL   F S  P
Sbjct: 456 DDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 443 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSR 498
           ++L     + ++S   P      ++ V   P+T + K+ R  LRD+ + ++S ++R
Sbjct: 514 EQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 358 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 417
           KG    R GD+      G++  Q R  + +   G   +  E+E +  +  E++ + A I 
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXK-HEAVXDVAVIG 471
Query: 418 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 477
             P     EV   F+VLK  +  + D+  +I  + ++ +++   +V  V+ V E PRTAS
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGKVDEEDII--EWVRERISGYKRVREVEFVEELPRTAS 528
Query: 478 NKLLRRVLRDQ 488
            KLLRR+LR++
Sbjct: 529 GKLLRRLLREK 539

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 111/318 (34%), Gaps = 65/318 (20%)
Query: 114 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 170
           HP  ++ +   +P D V     S GTTG PK IP T      S+R + E       +   
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 171 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
           +   P    + M        FL G T+ L         F   ++   V V   VP  V  
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 287
           W     +EG    ++ S                         +   GG  LS+       
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 288 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 332
              G  LQ Q FG      M  GLV           I+   G P  PDD+  V +    P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 333 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 384
           L  G   RL+        FRG    P +       +G     D+I     GYI VQGR  
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 385 DTMNLGGIKTSSVEIERV 402
           D +N GG K ++ EIE +
Sbjct: 435 DQINRGGEKIAAEEIENL 452

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 328 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 387
           VGLF  Y    +R     H+  Y               GD+      GY+   GRADD +
Sbjct: 432 VGLFVHYGKDPERTEETWHDGYY-------------HTGDMAWMDEDGYLWFVGRADDII 478
Query: 388 NLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLK 446
              G K    E+E    Q   ++LE A   V  P  G  +V+   +VL K +T   D LK
Sbjct: 479 KTSGYKVGPFEVESALIQH-PAVLECAITGVPDPVRG--QVIKATIVLTKDYTPS-DSLK 534
Query: 447 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
                 +++   P     +++ VPE P+T S K+ R  +RD+
Sbjct: 535 NELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 150/405 (37%), Gaps = 104/405 (25%)
Query: 130 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 189
           V  ++F+SG+TG PK +  +   ++  T  G  +      +V+   + + W    + LF 
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 190 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVL------------------------- 221
           + L GA   L  G    PLE   G+ V   GVT+L                         
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAI 332
Query: 222 -----GTVPSLVKAWRNTNCLE-GLDWTKIRSFASTGETSNVDDDLW---------LSSK 266
                 +VP + KA R+   L  G  +    S   T   + V  DL          L+ K
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392
Query: 267 AWY--NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 324
             Y  +  ++      L   Y+ G+ L   A G  S   +TA   + D          P 
Sbjct: 393 RAYVLDDDLKPAANGALGELYVAGAGL---AHGYVSRPALTAERFVAD----------PF 439
Query: 325 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 384
            G  G                 E +Y             R GD+ +R   G +   GRAD
Sbjct: 440 AGPGG-----------------ERMY-------------RTGDLARRRADGVLEYVGRAD 469
Query: 385 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD- 443
           D + + G +    E+E          +  AA+    +  G + LV +VV ++   + PD 
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-DAPPDA 526
Query: 444 -KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVL 485
            +L+   ++A+ + + P      V+ VP  E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVP------VECVPVDELPRTPNGKLDRRAL 565

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           R GDI++ T  GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S+     
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFL 468
Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
           G E   +F++ +       +    +  + + +   P      V+ V  FP+T   K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 484 VLRDQIKHEL 493
            LR+ I  +L
Sbjct: 524 ALREAISEKL 533

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
           R GDI++ T  GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S      
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAXVSXPDQFL 468
Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
           G E   +F++ +       +    +  + + +   P      V+ V  FP+T   K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 484 VLRDQIKHEL 493
            LR+ I  +L
Sbjct: 524 ALREAISEKL 533

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 110/288 (38%), Gaps = 34/288 (11%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
            +KGD +A+ MP +V    ++      G V V I    AA E++  L  S +K       
Sbjct: 51  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 104
Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
           ++ G    P+   +   A     V   IG D    L E+  S      +V+     N + 
Sbjct: 105 VIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAERLRSAAADEPAVECGGDDNLF- 160
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGW 180
                      I+++SGTTG PK +  T   S+   A  WA  ID++  D    P  +  
Sbjct: 161 -----------IMYTSGTTGHPKGVVHTH-ESVHSAASSWASTIDVRYRDRLLLPLPMFH 208
Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
           V     +  S + G TL         + +   V++  V + G VP+++   R       L
Sbjct: 209 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAEL 267
Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AIIESCGGTEL 281
           D    R F + G       +  +   A  N       A+ ESCGG  L
Sbjct: 268 DAPDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTL 312

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 149/391 (38%), Gaps = 45/391 (11%)
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCT-AEGWAHIDLKVGDVYCWPT 176
           PV  P  A   + +++GTTG PK + ++     L S+  +  +G A   L   DV     
Sbjct: 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 226
Query: 177 NLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236
            +  V    + +++ L GA   L        S  +     GVT    VP++  A  +   
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 286
Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG-------S 289
             G     +R     G  S     L    +     + +  G TE S   +Q        S
Sbjct: 287 STGHRLKTLRRLVVGG--SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344
Query: 290 LLQPQAFGAFSTATMTAGLVIL---DECGVPYPDDQPCVGEVGLFPL-----YLGASDRL 341
           L + +     +   +   LV L   DE G P P D   +GEV L        Y G  +  
Sbjct: 345 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 342 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
            +A   + +FR             GDI      GY+ ++ R  D +  GG   SSV++E 
Sbjct: 405 RSALTPDGFFRT------------GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN-PL 460
                   + E A +++         L   VV+ +G    P++L     KA  +K   P 
Sbjct: 453 AL-MGHPKVKEAAVVAIPHPKWQERPLA--VVVPRGEKPTPEELNEHLLKAGFAKWQLPD 509
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 491
             V       E PRT++ K L+R LR+Q K+
Sbjct: 510 AYV----FAEEIPRTSAGKFLKRALREQYKN 536

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 102/506 (20%), Positives = 190/506 (37%), Gaps = 61/506 (12%)
Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD I + +P +   V+ +L     G ++ +        E+A   + S+AK + TQ  
Sbjct: 71  IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQAC 130
Query: 62  ILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 117
                + F   S V    + +AP           D  +   E   + ++    VD  P  
Sbjct: 131 YYEKVKDFARESDVKVMCVDSAP-----------DGCLHFSELTQADENEAPQVDISP-- 177
Query: 118 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 177
                     D VV + +SSGTTG PK +  T    I   A+    +D    ++Y    +
Sbjct: 178 ----------DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ---QVDGDNPNLYFHSED 224
Query: 178 LGWVMGPVILFSSFLNGATLALYQGSPLE-------RSFGKFVQDAGVTVLGTVPSLVKA 230
           +   + P+    +  +     L  G+P+         S    ++   V++   VP ++ +
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 290
              +  L+  D + +R   S G     + +  + +K     + +  G TE          
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 291 LQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNAD 345
              + F    GA  T    A + I+D E G   P +QP  GE+ +        D+++   
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICI------RGDQIMKGY 396
Query: 346 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 405
             +       + K   L               IV  R  + +   G + +  E+E +   
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKELIKYKGFQVAPAELEALL-I 454
Query: 406 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF--KV 463
           A   I + A + +     G EV V FVV  +   +  D++K   SK +      +F  ++
Sbjct: 455 AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQYISKQV------IFYKRI 507
Query: 464 SLVKVVPEFPRTASNKLLRRVLRDQI 489
             V  +   P+  S K+LR+ L++++
Sbjct: 508 KRVFFIEAIPKAPSGKILRKNLKEKL 533

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 106/523 (20%), Positives = 188/523 (35%), Gaps = 81/523 (15%)
Query: 3   SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62
           ++ D + + +P     V+ +LA    G    +    F   EIA + + S  K I T+   
Sbjct: 111 NQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY 170
Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
           +   +  PL +          +V+  I ++  +P+ E  L + +   S          S 
Sbjct: 171 VDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST------TEASE 215
Query: 123 VYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNL 178
           V + V    D VV + +SSGTTG PK +  T    +   A+    +D +  ++Y    ++
Sbjct: 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGENPNLYFHSDDV 272
Query: 179 GWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
              + P+        I+      GA + +     +     + +Q   VTV   VP +V A
Sbjct: 273 ILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTVAPMVPPIVLA 331
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 290
              ++  E  D + IR   S       + +  +++K     + +  G TE          
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLG 391
Query: 291 LQPQAF----GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 346
              + F    GA  T    A + I+D      PD                  D L     
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVD------PD----------------TGDSLSRNQP 429
Query: 347 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGY--------------IIVQGRADDTMNLGGI 392
            E+  RG  + KG               G+              + +  R  + +   G 
Sbjct: 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGF 489
Query: 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 452
           + +  E+E +       I + A +++     G EV V FVV  K      D +K   SK 
Sbjct: 490 QVAPAELEALL-IGHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQFVSKQ 547
Query: 453 I--QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 493
           +    ++N +F           P+  S K+LR+ LR ++ + L
Sbjct: 548 VVFYKRINKVF------FTESIPKAPSGKILRKDLRAKLANGL 584

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 149/374 (39%), Gaps = 34/374 (9%)
Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 192
           I+++SGTTG+PK    T  ++I+   +   ++     D +   +N  +       ++S L
Sbjct: 612 IMYTSGTTGKPKGNITTH-ANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASML 670
Query: 193 NGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSF 248
           N A L +     L   ER     +Q+  V V+    +L     +     G DW K +R  
Sbjct: 671 NAARLIIADEHTLLDTERLTDLILQE-NVNVMFATTALFNLLTDA----GEDWMKGLRCI 725
Query: 249 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTE---LSSAYIQGSLLQPQAFGAFSTATMT 305
              GE ++V              +I   G TE    ++A++   L    +          
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISN 785
Query: 306 AGLVILDECGVPYPDDQPCVGEVGLFPLY-LGASDRLLN-ADHEEVYFRGMPMYKGMCLR 363
           A + IL+E     P      G VG   +  +G S   +N AD  +  F   P   G  L 
Sbjct: 786 ASVYILNEQSQLQP-----FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLY 840
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI-LETAAISVSPAG 422
           R GD+ +    G I   GR DD + + G +   +E+E +  Q  E   ++ A +      
Sbjct: 841 RTGDLARWLPDGTIEYAGRIDDQVKIRGHR---IELEEIEKQLQEYPGVKDAVVVADRHE 897
Query: 423 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 482
            G   +  ++V +   +++   +K    K + + + P         + E P T + K+ +
Sbjct: 898 SGDASINAYLVNRTQLSAE--DVKAHLKKQLPAYMVP----QTFTFLDELPLTTNGKVNK 951
Query: 483 RVL----RDQIKHE 492
           R+L    +DQ+  E
Sbjct: 952 RLLPKPDQDQLAEE 965

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-47
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-40
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-34
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	5e-29
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	6e-29
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	9e-29
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-24
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	8e-21
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-20
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-20
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	5e-07
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-20
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-06
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-19
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-04
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-18
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-07
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-17
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-11
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-17
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-09
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-16
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-06
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-13
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-10
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-09
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-08
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	9e-09
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-08
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	5e-06
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-05
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	5e-05
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-04

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  170 bits (434), Expect = 3e-47
 Identities = 108/500 (21%), Positives = 179/500 (35%), Gaps = 57/500 (11%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
             + I + M  TV   + +L  + AG V V         +    L  S A+ +     ++
Sbjct: 72  PEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV 131

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                    ++ L +A      L         P       +++ + +             
Sbjct: 132 ------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AAPAAKAA 178

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWV 181
               D +   L+SSG+TG+PK    T  +++  TAE +A   + +   DV      L + 
Sbjct: 179 ATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFA 237

Query: 182 MGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
            G    L      GAT  L    P   +    + +   TV   VP+L      +  L   
Sbjct: 238 YGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR 297

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGSLLQPQAF 296
               IR   S GE      ++    + +       I++  G TE+   ++  +      +
Sbjct: 298 ADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL-SNRAGAVEY 351

Query: 297 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYF 351
           G          + + DE G   PD +  VG++         +Y        N +     F
Sbjct: 352 GTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMYWN------NREKSRATF 403

Query: 352 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 411
            G          R GD   R   G  +  GR+DD + + G   S VE+E V  Q  +++L
Sbjct: 404 LG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ-HDAVL 455

Query: 412 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKV-SLVKV 468
           E A + V   G        FVVLK+ F       + +  F K    +L P  K    +  
Sbjct: 456 EAAVVGVDHGGL--VKTRAFVVLKREFAPSEILAEELKAFVKD---RLAP-HKYPRDIVF 509

Query: 469 VPEFPRTASNKLLRRVLRDQ 488
           V + P+TA+ K+ R  LR+Q
Sbjct: 510 VDDLPKTATGKIQRFKLREQ 529

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  152 bits (387), Expect = 1e-40
 Identities = 109/515 (21%), Positives = 185/515 (35%), Gaps = 83/515 (16%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +GD +A+ +P      ++ L  I AG + +       + +I  RL++SKAK I   D   
Sbjct: 98  RGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD--- 154

Query: 64  RGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 119
                  +  +V   A     L+  +L      V     +  L++K  L+          
Sbjct: 155 ------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA-----STT 197

Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 179
           +  V         I F+SGT+G PK    +  S             L+  D+    ++ G
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTG 257

Query: 180 WVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVKAWRN 233
           W++  +  L   +  GA   ++     +     K +    +  +   P     L++    
Sbjct: 258 WILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-- 315

Query: 234 TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS 289
              L    +  +++  + GE+     +     + W       I ES G TE +      S
Sbjct: 316 ---LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE-TGLTCMVS 366

Query: 290 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLGASD 339
                  G   TA     + I+D+ G   P      G+          +G+F  Y+   D
Sbjct: 367 KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGYVDNPD 424

Query: 340 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
           +       + +               GD   +   GY    GRADD +N  G +    E+
Sbjct: 425 KTAANIRGDFWLL-------------GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471

Query: 400 ERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAIQ--- 454
           E        +++ETA IS   P  G  EV+  FVVL   F S   ++L     K +Q   
Sbjct: 472 ENAL-MEHPAVVETAVISSPDPVRG--EVVKAFVVLASQFLSHDPEQLT----KELQQHV 524

Query: 455 -SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
            S   P      ++ V   P+T + K+ R  LRD+
Sbjct: 525 KSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  133 bits (338), Expect = 6e-34
 Identities = 107/521 (20%), Positives = 181/521 (34%), Gaps = 90/521 (17%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD + + +          L +   G + V        R+I  R+  +  K I       
Sbjct: 110 KGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA--- 166

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSP 122
                     +           +P     VG  + E  + ++  L  S     RP     
Sbjct: 167 -EDDVPEQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVS 221

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-PTNL 178
                D  + + FSSGT G PK +       L  I  TA+ W   +++   ++ +   + 
Sbjct: 222 T-KNEDICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLH-YTVADS 275

Query: 179 GWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWR 232
           GW       L+  ++ G  + +Y     E ++  +     GVT     P     L+K   
Sbjct: 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED- 334

Query: 233 NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYI 286
               L   +++ ++     GE  N   +++     +       ++E  G TE  ++ A  
Sbjct: 335 ----LSHYNFSTLKYAVVAGEPLN--PEVF---NRFLEFTGIKLMEGFGQTETVVTIATF 385

Query: 287 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLG 336
                +P   G+    T    + ++D  G      +   GE          VGLF  Y  
Sbjct: 386 PWMEPKP---GSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGK 440

Query: 337 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
             +R     H+  Y               GD+      GY+   GRADD +   G K   
Sbjct: 441 DPERTEETWHDGYYHT-------------GDMAWMDEDGYLWFVGRADDIIKTSGYKVGP 487

Query: 397 VEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSK 451
            E+E        ++LE A   V      P     +V+   +VL K +T   D LK     
Sbjct: 488 FEVESAL-IQHPAVLECAITGV------PDPVRGQVIKATIVLTKDYTPS-DSLK----N 535

Query: 452 AIQ----SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
            +Q    +   P     +++ VPE P+T S K+ R  +RD+
Sbjct: 536 ELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  119 bits (300), Expect = 5e-29
 Identities = 103/520 (19%), Positives = 178/520 (34%), Gaps = 88/520 (16%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           + D + + +P       +  A+   G + V    S  + EI      ++A      D   
Sbjct: 74  QKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AY 132

Query: 64  RGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
            G     L  +V    P LK I++       G    E+ L  +D  +     P       
Sbjct: 133 SGFDYRSLARQVQSKLPTLKNIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--- 181

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT--- 176
                  V  +  S G+TG  K IP T    + S++ + E      L    VY       
Sbjct: 182 -----SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMA 233

Query: 177 -NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 234
            N       V+       G  + L    SP + +F   ++   VT+   VP L   W + 
Sbjct: 234 HNYPLSSPGVL--GVLYAGGRVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVWMDA 289

Query: 235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC-GGTELSSAYIQGSLLQP 293
                 D + ++     G  +    +     KA +   ++   G  E       G +   
Sbjct: 290 ASSRRDDLSSLQVLQVGG--AKFSAEAARRVKAVFGCTLQQVFGMAE-------GLVNYT 340

Query: 294 QAFGAFSTATMTAGLVIL--DECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHEEVY 350
           +          T G  +   DE  V    D+    GE G                   + 
Sbjct: 341 RLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG------------------HLL 382

Query: 351 FRG---MPMYKGM------CLRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396
            RG   +  Y              G     DI++ T  GYI+V+GRA D +N GG K ++
Sbjct: 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA 442

Query: 397 VEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 455
            E+E     A  ++ + A +S+     G  E   +F++ +       +    +  + + +
Sbjct: 443 EEVENHL-LAHPAVHDAAMVSMPDQFLG--ERSCVFIIPRDEAPKAAELKAFLRERGLAA 499

Query: 456 KLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
                +K+   V+ V  FP+T   K+ ++ LR+ I  +L 
Sbjct: 500 -----YKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  119 bits (301), Expect = 6e-29
 Identities = 104/531 (19%), Positives = 168/531 (31%), Gaps = 107/531 (20%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            G+   + +       I + A++  G   V    S    E+       +   +       
Sbjct: 74  PGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR--- 130

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
               +  L+S              +I     +     D    +   ++++       +P 
Sbjct: 131 ----QHALFSGDDFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS 181

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT---- 176
             P D V     S GTTG PK IP T      S+R + E            Y        
Sbjct: 182 --PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAH 236

Query: 177 NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 235
           N      P  L   FL G T+ L    S     F   ++   V V   VP  V  W    
Sbjct: 237 NYAMSS-PGSL-GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLWLQ-- 290

Query: 236 CLEGLDWTKIRSFASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQ------G 288
                        A     S       L+S K          GG  LS+          G
Sbjct: 291 -------------ALIEGESRAQ----LASLKLLQ------VGGARLSATLAARIPAEIG 327

Query: 289 SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 348
             LQ Q FG      M  GLV            +  +   G  P+       + +A+   
Sbjct: 328 CQLQ-QVFG------MAEGLVN---YTRLDDSAEKIIHTQGY-PMCPDDEVWVADAEGNP 376

Query: 349 V------------------YFRGMPMYKGMCLRRHG-----DIIKRTVGGYIIVQGRADD 385
           +                  Y++  P +       +G     D+I     GYI VQGR  D
Sbjct: 377 LPQGEVGRLMTRGPYTFRGYYK-SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435

Query: 386 TMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDK 444
            +N GG K ++ EIE +      +++  A +S+     G  E    ++V+K+       +
Sbjct: 436 QINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG--EKSCAYLVVKEPLR--AVQ 490

Query: 445 LKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
           ++    + ++ +    FK+   V+ V   P TA  K+ ++ LR  +    S
Sbjct: 491 VR----RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 537

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  119 bits (300), Expect = 9e-29
 Identities = 137/548 (25%), Positives = 209/548 (38%), Gaps = 125/548 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAK 54
           KGD +AI MPM   A +  LA         +I  G         F+   +A  +  S ++
Sbjct: 131 KGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGCIIDSSSR 181

Query: 55  GIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLREQDLSWKD 106
            + T D  +R GR  PL   V               IVL   G+D+     R  DL W+D
Sbjct: 182 LVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR--DLWWRD 239

Query: 107 FLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---W 161
            +           + P    ++A   + IL++SG+TG+PK +  T       T  G   +
Sbjct: 240 LIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------TG-GYLVY 284

Query: 162 AHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF- 212
           A        D   GD+Y W T ++GWV G   +L+     GAT  +++G P   +  +  
Sbjct: 285 AATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343

Query: 213 --VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLS 264
             V    V +L T P+ ++A       EG    +      +R   S GE  N   + W  
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN--PEAWE- 396

Query: 265 SKAWYNAIIESCGGTELSSAYI-----Q----GSLLQPQAFGAFSTATMTAGL------- 308
              WY   I   G        +     Q    G ++ P   GA      +A         
Sbjct: 397 ---WYWKKI---GK---EKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATRPFFGVQP 446

Query: 309 VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKG 359
            ++D  G P           G     L  +D      R L  DHE   + YF     +K 
Sbjct: 447 ALVDNEGHPQEG-----ATEG----NLVITDSWPGQARTLFGDHERFEQTYF---STFKN 494

Query: 360 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 419
           M     GD  +R   GY  + GR DD +N+ G +  + EIE     A   I E A + + 
Sbjct: 495 MYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIP 551

Query: 420 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479
            A  G + +  +V L  G      +L       ++ ++ PL    ++      P+T S K
Sbjct: 552 HAIKG-QAIYAYVTLNHGEEP-SPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609

Query: 480 LLRRVLRD 487
           ++RR+LR 
Sbjct: 610 IMRRILRK 617

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  103 bits (259), Expect = 8e-24
 Identities = 86/520 (16%), Positives = 166/520 (31%), Gaps = 99/520 (19%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           +   + + +  +++++I+  A  LA   +  I       E+  ++R    + IF      
Sbjct: 47  QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL--- 103

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
                 PL  +      L  I          G+      + +     +V     P+    
Sbjct: 104 ------PLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILN 157

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWV 181
               +D + +I+F+SGTTG  KA+P T   +   +A G    +       +     +  +
Sbjct: 158 TSFNLDDIASIMFTSGTTGPQKAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHI 216

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
            G  +L  + + G T+ +      E+     +++  +T +  VP  +            +
Sbjct: 217 SGLSVLLRAVIEGFTVRIVDKFNAEQIL-TMIKNERITHISLVPQTLNWLMQQ---GLHE 272

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
              ++     G  + +   +  ++  +   I  S G TE  S   Q     P+       
Sbjct: 273 PYNLQKILLGG--AKLSATMIETALQYNLPIYNSFGMTETCS---QFLTATPE------- 320

Query: 302 ATMTAGLVILDECGVPYP-------DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 353
                     D  G+P         +        G                  E+  +G 
Sbjct: 321 ----MLHARPDTVGMPSANVDVKIKNPNK--EGHG------------------ELMIKGA 356

Query: 354 --MPMYKGMCLRR------------H-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 398
             M  Y    L              + GDI +    GY+++  R  D +  GG      +
Sbjct: 357 NVMNGY----LYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412

Query: 399 IERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAI 453
           IE V  Q    I +   +      G P     +V  ++ V +   +    +L   +    
Sbjct: 413 IETVAKQ-FPGISDAVCV------GHPDDTWGQVPKLYFVSESDIS--KAQLIA-YLSK- 461

Query: 454 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHE 492
              L   +KV    + V   P T++ KL R  L  +  H 
Sbjct: 462 --HLAK-YKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 94.2 bits (235), Expect = 8e-21
 Identities = 103/522 (19%), Positives = 163/522 (31%), Gaps = 115/522 (22%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +A+ MP +V    ++      G V V I    AA E++  L  S +K +       
Sbjct: 67  KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                 P+   +   A     V   IG D          S  + L S             
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
               D  + I+++SGTTG PK +  T  S     +   + ID++  D    P  +  V  
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA 225

Query: 184 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLE 238
              +  S + G TL           F        + +  V + G VP+++   R      
Sbjct: 226 LTTVIFSAMRGVTLI------SMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA 279

Query: 239 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 298
            LD    R F + G  + + + L     A    +++    TE       G+LL  +    
Sbjct: 280 ELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG---GTLLLSE---- 330

Query: 299 FSTATMTAGLVILDECGVPYP---------DDQPCVGEVGLFPLYLGASDRLLNADHEEV 349
                    L      G             D        G                  EV
Sbjct: 331 -------DALRKAGSAGRATMFTDVAVRGDDGVIREHGEG------------------EV 365

Query: 350 YFRG---MPMYKGMCLRR-------------H-GDIIKRTVGGYIIVQGRADDTMNLGGI 392
             +    +  Y      R               GDI +    GY+ ++ R  D +  GG 
Sbjct: 366 VIKSDILLKEY----WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421

Query: 393 KTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKM 447
                EIE V       + E A I +      P     E+    VV  +       ++  
Sbjct: 422 NVYPAEIESVIIGVPG-VSEVAVIGL------PDEKWGEIAAAIVVADQN-EVSEQQIVE 473

Query: 448 IFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 488
            +      +L   +K+   V      PR  + K+L+ VLR+Q
Sbjct: 474 -YCGT---RLAR-YKLPKKVIFAEAIPRNPTGKILKTVLREQ 510

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 93.4 bits (233), Expect = 2e-20
 Identities = 80/515 (15%), Positives = 143/515 (27%), Gaps = 101/515 (19%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +AI        + +  A+ L G +++ +     A EIA  L       +       
Sbjct: 55  TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                  + + VL +                  + +    +  F       P        
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
                    I+ ++   G P+    +Q + +   +       L   DV      L  V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215

Query: 184 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLE 238
             ++ +    G          +   F      + ++   VTV+     ++      +   
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFAPML--GNILDQAA 267

Query: 239 GLDWTKIRSFASTG--ETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQA 295
                 +R+       ET      +        NA    + G +E S      +    + 
Sbjct: 268 PAQLASLRAVTGLDTPET------IERFEATCPNATFWATFGQSETSGL---STFAPYRD 318

Query: 296 -FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 353
              +         + ++D    P P      GEVG                  E+  RG 
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLP-----PGEVG------------------EIVLRGP 355

Query: 354 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRAD--DTMNLGGIKTSSVEI 399
                Y           R      GD+ +    GY+   GRA   + +  GG      E+
Sbjct: 356 TVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415

Query: 400 ERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 454
           E    Q   +I +   I V      P     E +    V K G +   D L   F  +  
Sbjct: 416 EGALKQ-HPAIADAVVIGV------PDPQWSEAIKAVCVCKPGESIAADAL-AEFVAS-- 465

Query: 455 SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 488
             +   +K    V  V   P+ A   + R  ++  
Sbjct: 466 -LIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTA 498

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 93.4 bits (233), Expect = 2e-20
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 24/258 (9%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
                 IA+         I  +A +  G  V    + +  RE+   L +SK   +F+   
Sbjct: 74  LVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSK- 132

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS--SVDYHPRPNY 119
                       KV+        +   +  D              F+   +       ++
Sbjct: 133 --------KGLDKVITVQKTVTTIKTIVILD-SKVDYRGYQCLDTFIKRNTPPGFQASSF 183

Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT 176
            +   +  + V  I+ SSG+TG PK +  T    ++      +      +  G       
Sbjct: 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVV 243

Query: 177 NLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR 232
                 G        + G  + +     L +    +F K +QD   T +  VP+L     
Sbjct: 244 PFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298

Query: 233 NTNCLEGLDWTKIRSFAS 250
            +  L   D + +   AS
Sbjct: 299 KSELLNKYDLSNLVEIAS 316

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 408 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 464
            SI +     V  P  G  E+    VVL+ G      ++       + S+++   K    
Sbjct: 464 PSIFDAGVAGVPDPVAG--ELPGAVVVLESGKNMTEKEVM----DYVASQVSN-AKRLRG 516

Query: 465 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
            V+ V E P+  + K+  R +R+ +K  ++
Sbjct: 517 GVRFVDEVPKGLTGKIDGRAIREILKKPVA 546

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 34/263 (12%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
            +    I +    +++  +  L  +  G  V    D +  RE+   + +S+   +F    
Sbjct: 72  LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK- 130

Query: 62  ILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD--YH 114
                       K+L          K I++ +  +  G        S   F++S      
Sbjct: 131 --------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ------SMYTFVTSHLPPGF 176

Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV 171
              ++    ++    +  I+ SSG+TG PK +               +      +     
Sbjct: 177 NEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236

Query: 172 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSL 227
                      G        + G  + L     + R     F + +QD  +     VP+L
Sbjct: 237 ILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEEELFLRSLQDYKIQSALLVPTL 291

Query: 228 VKAWRNTNCLEGLDWTKIRSFAS 250
              +  +  ++  D + +   AS
Sbjct: 292 FSFFAKSTLIDKYDLSNLHEIAS 314

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 408 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 464
            +I +     +     G  E+    VVL+ G T    ++       + S++    K    
Sbjct: 462 PNIFDAGVAGLPDDDAG--ELPAAVVVLEHGKTMTEKEIV----DYVASQVTT-AKKLRG 514

Query: 465 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
            V  V E P+  + KL  R +R+ +     
Sbjct: 515 GVVFVDEVPKGLTGKLDARKIREILIKAKK 544

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 89.7 bits (223), Expect = 5e-19
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 39/245 (15%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
            ++ D + + +P     V+ +LA    G    +    F   EIA + + S  K I T+  
Sbjct: 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEA- 168

Query: 62  ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
                       K+        +V+  I ++  +P+ E  L + +   S           
Sbjct: 169 --------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTT--EASEVID 218

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-HIDLKVGDVYCWPTN 177
            V    D VV + +SSGTTG PK +  T    ++S+    +G   ++     DV      
Sbjct: 219 SVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI----- 273

Query: 178 LGW-----VMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVP 225
           L       +       +S +      L  G+ +            + +Q   VTV   VP
Sbjct: 274 LCVLPMFHIYA----LNSIMLC---GLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP 326

Query: 226 SLVKA 230
            +V A
Sbjct: 327 PIVLA 331

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 408 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 467
             I + A +++     G EV V FVV  K      D +K    + +  ++    +++ V 
Sbjct: 504 PDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVK----QFVSKQVVFYKRINKVF 558

Query: 468 VVPEFPRTASNKLLRRVLRDQIKHE 492
                P+  S K+LR+ LR ++ + 
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANG 583

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 86.5 bits (215), Expect = 3e-18
 Identities = 42/257 (16%), Positives = 89/257 (34%), Gaps = 39/257 (15%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KG+ + + +P ++  V+   A+       V I   + + E+   L  S+A  +     + 
Sbjct: 76  KGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY 135

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                   +  VL    ++ + +             +  S  + + S       ++ +  
Sbjct: 136 ------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDS----GSEDFENVK 175

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
            NP + V  I ++ GTTG PK +  T  +      +      L   D          ++G
Sbjct: 176 VNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVG 226

Query: 184 PVILFSSF-LNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 235
            + +F S       L +  G+         +    + ++    T    VP  +    NT 
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTL 286

Query: 236 C--LEGLDWTKIRSFAS 250
               +  DW+ ++ FA+
Sbjct: 287 ESSNKTYDWSYLKVFAT 303

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 424
           GD+      G++  Q R  + +   G   +  E+E +     E++++ A I       G 
Sbjct: 421 GDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL-MKHEAVMDVAVIGKPDEEAG- 478

Query: 425 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 483
            EV   F+VLK  +  + D+  +I  + ++ +++  +K    V+ V E PRTAS KLLRR
Sbjct: 479 -EVPKAFIVLKPEYRGKVDEEDII--EWVRERISG-YKRVREVEFVEELPRTASGKLLRR 534

Query: 484 VLRDQIK 490
           +LR++  
Sbjct: 535 LLREKEA 541

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 84.5 bits (210), Expect = 1e-17
 Identities = 50/249 (20%), Positives = 81/249 (32%), Gaps = 32/249 (12%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD   + +P      I++ A++ AG VV++   S    E+   ++  + K +       
Sbjct: 79  KGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR--- 135

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
               +  ++S       L   V  +    + +  +  D    D++ +    P   +    
Sbjct: 136 ----QHEVFSNNQFIDSLHD-VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFS 186

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT---- 176
             P D V     S G+TG PK IP T      S+R +AE      L              
Sbjct: 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPH 243

Query: 177 NLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 235
           N                G  + +     P    F   +Q   V +   VPS V  W    
Sbjct: 244 NFMLSSP--GALGVLHAGGCVVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW---- 295

Query: 236 CLEGLDWTK 244
            LE     K
Sbjct: 296 -LEKAAQYK 303

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 424
           GD+++RT  G + V GR  D +N GG K +S EIE++       ++  A +++     G 
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI-LLHPEVMHAALVAIVDEQFG- 478

Query: 425 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 483
            E    F+V +         L+    +   ++    +K+   +K++   P TA  K+ ++
Sbjct: 479 -EKSCAFIVSRNPELKAVV-LRRHLMELGIAQ----YKLPDQIKLIESLPLTAVGKVDKK 532

Query: 484 VLRDQIKHELS 494
            LR  +    +
Sbjct: 533 QLRSILNTSTT 543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 83.4 bits (207), Expect = 4e-17
 Identities = 67/307 (21%), Positives = 119/307 (38%), Gaps = 73/307 (23%)

Query: 4   KGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAK 54
           KGD +A+ MPM   A+I  LA         ++ AG         F++  +  R+    +K
Sbjct: 138 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSK 188

Query: 55  GIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFL 108
            + T D   RGG+       V   L   P     +V     N   +     +DL W    
Sbjct: 189 VVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEK 247

Query: 109 SSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAH 163
                     YY     PVD+   + +L++SG+TG PK +  +       TA G    A 
Sbjct: 248 KKY-----KTYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGAL 292

Query: 164 I------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF--- 212
           +      D    DV+ +   ++GW+ G   +++   L G    +++G+P   ++ ++   
Sbjct: 293 LTMRYTFDTHQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351

Query: 213 VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSK 266
           + +  VT     P+ ++  +      G  + +      +R   S GE      ++W    
Sbjct: 352 IDEHKVTQFYVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE--- 402

Query: 267 AWYNAII 273
            WY+  I
Sbjct: 403 -WYSEKI 408

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 345 DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
           +H+   + Y      Y G      GD   +   GYI + GR DD +N+ G + S+ EIE 
Sbjct: 489 NHDRYLDTYL---NPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEA 543

Query: 402 VCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQP------DKLKMIFS 450
                D  + E A +      G       + +  FVVLK   +           +K    
Sbjct: 544 AII-EDPIVAECAVV------GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLV 596

Query: 451 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
             ++  + P     L+ +V + P+T S K++RR+LR  +  E  
Sbjct: 597 FTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 640

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 48/266 (18%), Positives = 97/266 (36%), Gaps = 49/266 (18%)

Query: 2   FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
             +GD I + +P +   V+ +L     G ++ +        E+A   + S+AK + TQ  
Sbjct: 71  IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQA- 129

Query: 62  ILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 118
                     Y KV   A    +K + + +  +          L + +   + +      
Sbjct: 130 --------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSELTQADENEAPQ- 172

Query: 119 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-HIDLKVGDVYCW 174
                 +P D V  + +SSGTTG PK +  T    ++S+    +G   ++     DV   
Sbjct: 173 ---VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVI-- 226

Query: 175 PTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTV 224
              L       +     I+      GA + +     + +    S    ++   V++   V
Sbjct: 227 ---LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLIEKYKVSIAPVV 278

Query: 225 PSLVKAWRNTNCLEGLDWTKIRSFAS 250
           P ++ +   +  L+  D + +R   S
Sbjct: 279 PPVMMSIAKSPDLDKHDLSSLRMIKS 304

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 408 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 466
             I + A + +     G  EV V FVV  +   +  D++K    + I  ++    ++  V
Sbjct: 457 PEISDAAVVGLKDEDAG--EVPVAFVVKSEKSQATEDEIK----QYISKQVIFYKRIKRV 510

Query: 467 KVVPEFPRTASNKLLRRVLRDQIK 490
             +   P+  S K+LR+ L++++ 
Sbjct: 511 FFIEAIPKAPSGKILRKNLKEKLA 534

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 70.7 bits (174), Expect = 4e-13
 Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 43/257 (16%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A     +V A+++YLA + AG V + +  ++   E+   +  ++ K +       
Sbjct: 52  VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP--- 108

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
               K    + +          L   G            S  D  +              
Sbjct: 109 ---SKRDGIAAIAAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA- 154

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL-- 178
               D +  IL++SGTTG  K    +     S+     + W        DV      +  
Sbjct: 155 ----DDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYH 207

Query: 179 --GWVMGPVILFSSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRN 233
             G  +       +     ++           F   K +   A  TVL  VP+       
Sbjct: 208 THGLFVA---SNVTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQ 258

Query: 234 TNCLEGLDWTKIRSFAS 250
           +  L       +R F S
Sbjct: 259 SPRLTKETTGHMRLFIS 275

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 424
           GD+ K    GY+ + GR  D +  GG      EIE   D     ++E+A I V     G 
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFG- 438

Query: 425 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 483
            E +   VV  KG T    ++       +  +L   FK+   V  V + PR    K+ + 
Sbjct: 439 -EGVTAVVVRDKGATIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKN 492

Query: 484 VLRDQIKH 491
           VLR+  K 
Sbjct: 493 VLRETYKD 500

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 36/229 (15%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
               +A+  P +   VI  LA+   G V   +     + E+A  ++  +           
Sbjct: 53  PQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV--- 109

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                  +   +  +     I+         +    +  S+   +      P        
Sbjct: 110 ----GRQVADAIFQSGSGARIIFLG-----DLVRDGEPYSYGPPIEDPQREP-------- 152

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--- 178
                    I ++SGTTG PKA    Q ++          + L+ G  +V      L   
Sbjct: 153 ----AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208

Query: 179 -GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVP 225
            G+      L ++     T  + +   P++    + VQ   VT L   P
Sbjct: 209 VGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLVQQEQVTSLFATP 252

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
            D+   T  G + + GR DD +  GG      EIERV   A   + E   I +       
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIGL------A 436

Query: 426 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 479
                + +   VV + G T   D L   F ++  S+L   FK      ++ + P+ A NK
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDT-FCRS--SELAD-FKRPKRYFILDQLPKNALNK 492

Query: 480 LLRRVLRDQ 488
           +LRR L  Q
Sbjct: 493 VLRRQLVQQ 501

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 51/204 (25%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 62
               +A+     +   +  +A +LAG   V +      +E+A  L  S    +    D  
Sbjct: 67  GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE 126

Query: 63  LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
           L            LGA     + + A G        + D +                   
Sbjct: 127 LPPA---------LGALERVDVDVRARGAVPEDGADDGDPAL------------------ 159

Query: 123 VYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL- 178
                     ++++SGTTG PK     +    +++   A+ W        DV      L 
Sbjct: 160 ----------VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLF 206

Query: 179 ---GWVMGPVILFSSFLNGATLAL 199
              G V+G   +      G ++  
Sbjct: 207 HVHGLVLG---ILGPLRRGGSVRH 227

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 366 GDIIKRTVGGYIIVQGRAD-DTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGG 423
           GD+  R   GY+ + GR   D +  GG K  + EIE         + E A      P  G
Sbjct: 387 GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDLG 445

Query: 424 GPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLL 481
             E +V ++V            L       + ++L P  K   +V+ +   PR    K++
Sbjct: 446 --ERIVAWIVPADPAAPPALGTLA----DHVAARLAP-HKRPRVVRYLDAVPRNDMGKIM 498

Query: 482 RRVLRD 487
           +R L  
Sbjct: 499 KRALNR 504

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 373 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVI 430
               + V GR  D + + G      +IE     +    +  + AA  +         L +
Sbjct: 447 HENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHE--YKLTV 504

Query: 431 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLR 486
              +K  F     +  +     I   +    ++ +  +V       P T S K+ R   R
Sbjct: 505 MCEVKNRFMDDVAQDNLF--NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCR 562

Query: 487 DQ 488
             
Sbjct: 563 KH 564

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 76/400 (19%), Positives = 132/400 (33%), Gaps = 94/400 (23%)

Query: 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 181
           P + VV +  SSGTTG+P  + +T    I   A   A        + GD        G  
Sbjct: 90  PREQVVRVHASSGTTGKPTVVGYTA-RDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148

Query: 182 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 236
            G + +       G  +    G   E+   + ++D    ++   PS    L+        
Sbjct: 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQV-QLIRDFEPKIILVTPSYMLNLIDEMVR--- 204

Query: 237 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 291
            +G+D   + ++      E              W  A+   +E+  G +    Y    ++
Sbjct: 205 -QGMDPAESSLKIGIFGAE-------------PWTQALRNEVETRVGIDALDIYGLSEVM 250

Query: 292 QPQAFGAFSTATMTAGLV---------ILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRL 341
            P    A        G V         I+D   G   PD     G  G            
Sbjct: 251 GP--GVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPD-----GSQG------------ 291

Query: 342 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK---------RTVGGYIIVQGRADDTM 387
                E V+       MP+     +R R  D+           R +     + GR+DD +
Sbjct: 292 -----ELVFTSLTKEAMPV-----IRYRTRDLTALLPPTARAMRRLAK---ITGRSDDML 338

Query: 388 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 447
            + G+     +IE +       +     I++S  G    + +   +  +   S  D  + 
Sbjct: 339 IVRGVNVFPSQIEEIVVALPL-LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397

Query: 448 IFSKAIQSKLNPLFKVSL-VKVVP--EFPRTASNKLLRRV 484
             ++ +Q ++  +  VS  V V+     P TA+ K  RRV
Sbjct: 398 ALARELQHRIKTMVGVSSGVTVLAAGGIPATATGK-ARRV 436

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 28/136 (20%)

Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKT-----SSVEIERVCDQADESILETAAISVSP 420
           GDI      GY+ ++ R  D      IK+     SSV++E         + E A +++  
Sbjct: 417 GDIAVWDEEGYVEIKDRLKDL-----IKSGGEWISSVDLENAL-MGHPKVKEAAVVAI-- 468

Query: 421 AGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPR 474
               P     E  +  VV +    +  +  + +            +++        E PR
Sbjct: 469 ----PHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF-----AKWQLPDAYVFAEEIPR 519

Query: 475 TASNKLLRRVLRDQIK 490
           T++ K L+R LR+Q K
Sbjct: 520 TSAGKFLKRALREQYK 535

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 49/238 (20%), Positives = 83/238 (34%), Gaps = 49/238 (20%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 62
            GD +A       R +  Y A+   G V+ +     + +EIA  L  ++ K +    + +
Sbjct: 71  VGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL 130

Query: 63  LRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
                  PL   + G    ++  V       +     E  L++++ L       R     
Sbjct: 131 -------PLVEAIRGELKTVQHFV------VMDEKAPEGYLAYEEALGEEADPVRV---- 173

Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIR-CTAEGWAHIDLKVGDVYCWPT 176
               P  A   + +++GTTG PK + ++     L S+     +G A   L   DV     
Sbjct: 174 ----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 226

Query: 177 -----NLGWVMGPVILFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVP 225
                N  W + P   +++ L GA   L       + L           GVT    VP
Sbjct: 227 PMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPASLVE----LFDGEGVTFTAGVP 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 58/443 (13%), Positives = 123/443 (27%), Gaps = 134/443 (30%)

Query: 99  EQDLSWKD--------FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP-KAIPWT 149
           E    +KD        F+ + D     +    + +     ++ +  S         + WT
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWT 70

Query: 150 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-----------ILFSSFLNGATLA 198
            LS      + +      V +V     N  ++M P+            ++    +     
Sbjct: 71  LLSKQEEMVQKF------VEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRD----R 118

Query: 199 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD---WTKIRSFASTGETS 255
           LY  + +   F K+           V  L    +    L  L       I     +G+T 
Sbjct: 119 LYNDNQV---FAKY----------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT- 164

Query: 256 NVDDDLWLSSKAWYNAIIESCGGTE---LSSAYIQ--GSLLQP-QAFGAFSTATMTAGLV 309
                 W++     +  ++     +   L+        ++L+  Q             L 
Sbjct: 165 ------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-----------LY 207

Query: 310 ILDECGVPYPDDQPCVGEVGLFPLYLG-ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 368
            +D       D    +       L +      L      + Y          CL      
Sbjct: 208 QIDPNWTSRSDHSSNI------KLRIHSIQAELRRLLKSKPYEN--------CL------ 247

Query: 369 IKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 428
                   +++     +  N       ++     C    + +L T    V+         
Sbjct: 248 --------LVL----LNVQNAKAWNAFNLS----C----KILLTTRFKQVTDFLSAATTT 287

Query: 429 VIFVV-LKKGFTSQPDKLKMIFSKAIQSKL----------NPLFKVSLV-KVVPEFPRTA 476
            I +       T  PD++K +  K +  +           NP  ++S++ + + +   T 
Sbjct: 288 HISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATW 344

Query: 477 SNKLLRRVLRDQIKH--ELSVRS 497
            N   + V  D++    E S+  
Sbjct: 345 DN--WKHVNCDKLTTIIESSLNV 365

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 75/388 (19%), Positives = 125/388 (32%), Gaps = 89/388 (22%)

Query: 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 181
           P D +  I  SSGTTG+P  + +T  + I   A   A        + GD        G  
Sbjct: 88  PQDRISRIHASSGTTGKPTVVGYTA-ADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146

Query: 182 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 236
            G +         G T+  + G   E+   + +QD    ++   PS    +         
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQV-QLIQDFRPDIIMVTPSYMLSIADEIER--- 202

Query: 237 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 291
            +GLD   + +R      E              W N +   IE   G +    Y    ++
Sbjct: 203 -QGLDPVQSSLRIGIFGAE-------------PWTNDMRVAIEQRMGIDAVDIYGLSEVM 248

Query: 292 QPQAFGAFSTATMTAGLVILDEC----------GVPYPDDQPCVGEVGLFPLYLGASDRL 341
            P    A        G  I ++           G   PD     GE+G            
Sbjct: 249 GPGV--ASECVETKDGPTIWEDHFYPEIIDPETGEVLPD-----GELG------------ 289

Query: 342 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK------RTVGGYIIVQGRADDTMNLG 390
                E V+       +P+     +R R  D+ +      RT+     + GR+DD M + 
Sbjct: 290 -----ELVFTSLTKEALPI-----IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVR 339

Query: 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 450
           G+     +IE    +     L      V    G  +VL + V            +++   
Sbjct: 340 GVNVFPTQIEEQLLKQRA--LAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVA-K 396

Query: 451 KAIQSKLNPLFKVSL-VKVVP--EFPRT 475
           +A+   +  L  V+  + V+P     R+
Sbjct: 397 QALAYDIKSLIGVTAVINVLPVNGIERS 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.59
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.58
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.87
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.85
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.8
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	84.57
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	84.28
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	84.13
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	83.05
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	82.21
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	80.28

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.3e-70  Score=558.95  Aligned_cols=454  Identities=19%  Similarity=0.228  Sum_probs=375.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....      ..+.........
T Consensus        71 v~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~  144 (536)
T 3ni2_A           71 IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDV  144 (536)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCc
Confidence            68999999999999999999999999999999999999999999999999999999987542      222222222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+..        ...+...+.++......     ........++++++++|||||||.||||+++|+++...+....
T Consensus       145 ~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~  211 (536)
T 3ni2_A          145 KVMCVDS--------APDGCLHFSELTQADEN-----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQV  211 (536)
T ss_dssp             EEEESSC--------CCTTCEETHHHHTSCGG-----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHH
T ss_pred             eEEEecC--------CCCCccCHHHHhhcccc-----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHH
Confidence            2222211        11234456666543221     1223345689999999999999999999999999988766543


Q ss_pred             e----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          162 A----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       162 ~----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      .    .+++.++|++++.+|++|.+++.. ++.+++.|+++++.+ .+++..+++.++++++|++.++|+++..|++...
T Consensus       212 ~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  290 (536)
T 3ni2_A          212 DGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD  290 (536)
T ss_dssp             CSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC
T ss_pred             hhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc
Confidence            3    456889999999999999999865 889999999999987 5678999999999999999999999999999887


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC----CCCCCccccccccCCCceEEEEC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~i~d  312 (499)
                      ....+++++|.+++||+++++++.+.++..++++++++.||+||++.....+.    .......+++|.|+++++++|+|
T Consensus       291 ~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d  370 (536)
T 3ni2_A          291 LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD  370 (536)
T ss_dssp             GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC
T ss_pred             cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe
Confidence            77788999999999999999999999999988899999999999986654432    12234568899999999999999


Q ss_pred             -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                       ++|++++.|+  .|||+| ++..+.+  ++.+++.+...|      ++++||+|||+|++|++|+++++||.||+||++
T Consensus       371 ~~~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~~------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  440 (536)
T 3ni2_A          371 PETGASLPRNQ--PGEICIRGDQIMKG--YLNDPEATSRTI------DKEGWLHTGDIGYIDDDDELFIVDRLKELIKYK  440 (536)
T ss_dssp             TTTCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEECSCCEEET
T ss_pred             CCCCcCCCCCC--ccEEEEeCcccchh--hcCChhHHHhhc------cCCCceEcccEEEEcCCceEEEEecccceEEEC
Confidence             7899999999  599999 6655543  333444444444      356899999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.+||++|. .||+|.+++|++++++..+ +.++++|+..++...+.++++++    ++++|+.|+.|..+++++
T Consensus       441 G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~  514 (536)
T 3ni2_A          441 GFQVAPAELEALLI-AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQY----ISKQVIFYKRIKRVFFIE  514 (536)
T ss_dssp             TEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HHTTSCGGGCCSEEEECS
T ss_pred             CEEECHHHHHHHHH-hCCCcceEEEEeeecCCCC-ceeEEEEEecCCCCCCHHHHHHH----HHHhccCCccccEEEEEe
Confidence            99999999999996 9999999999999988888 99999999988766676666555    567899999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHh
Q 010854          471 EFPRTASNKLLRRVLRDQIKH  491 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~  491 (499)
                      +||+|++|||+|++|++++++
T Consensus       515 ~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          515 AIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             CCCBCTTSCBCHHHHHTC---
T ss_pred             cCCCCCCCCeeHHHHHHHhcc
Confidence            999999999999999987753

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.7e-69  Score=549.06  Aligned_cols=450  Identities=20%  Similarity=0.217  Sum_probs=372.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.........
T Consensus        50 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~  123 (503)
T 4fuq_A           50 LQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGA  123 (503)
T ss_dssp             CCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCc
Confidence            68999999999999999999999999999999999999999999999999999999988543      222222222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+..  .        ....+.+......     .........++++++++|||||||.||||+++|+++.+.+....
T Consensus       124 ~~~~~~~--~--------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  188 (503)
T 4fuq_A          124 TVETLGP--D--------GRGSLTDAAAGAS-----EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLV  188 (503)
T ss_dssp             EEEECCT--T--------SCSHHHHHHHTSC-----SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHH
T ss_pred             eEEEecC--C--------cccccchhhhcCC-----CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHH
Confidence            2222211  0        1112222222111     12223345689999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..++++++|+++..+|++|.+++.. ++.+++.|+++++.+ .++++.+++.++  ++|++.++|+++..+++.......
T Consensus       189 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~  265 (503)
T 4fuq_A          189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE  265 (503)
T ss_dssp             HHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred             HHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc
Confidence            8889999999999999999999765 788999999999987 568889999998  899999999999999998877777


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYP  319 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~  319 (499)
                      +++++|.+++||+++++++.+.+...+ ++.+++.||+||++.... .........+++|+|+|+++++|+| ++|++++
T Consensus       266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~  343 (503)
T 4fuq_A          266 TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELP  343 (503)
T ss_dssp             TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCC
T ss_pred             chhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCc
Confidence            789999999999999999999988776 788999999999987543 3333445568899999999999999 8999999


Q ss_pred             CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854          320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE  398 (499)
Q Consensus       320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~  398 (499)
                      .|+  +|||+| ++..+.+  ++.+++.+...|      +.++||+|||+|++|++|+++++||.||+||++|++|+|.|
T Consensus       344 ~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  413 (503)
T 4fuq_A          344 RGD--IGMIEVKGPNVFKG--YWRMPEKTKSEF------RDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE  413 (503)
T ss_dssp             TTC--CEEEEEESTTSCCC--BTTCHHHHHHTB------CTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH
T ss_pred             CCC--ceEEEEECCchhhh--hcCChhhhHhhh------CCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH
Confidence            999  599999 6655543  334445454444      34679999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. .||+|.+++|++++++..+ +.++++|+..++...+.+++.++    ++++|+.|+.|..|+++++||+|++|
T Consensus       414 IE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~G  487 (503)
T 4fuq_A          414 IESEID-AMPGVVESAVIGVPHADFG-EGVTAVVVRDKGATIDEAQVLHG----LDGQLAKFKMPKKVIFVDDLPRNTMG  487 (503)
T ss_dssp             HHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HBTTBCGGGCCSEEEEESCCCBCTTS
T ss_pred             HHHHHH-hCCCeeEEEEEEeEchhcC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhcccCCCCCEEEEECCCCCCccc
Confidence            999996 9999999999999988888 89999999988777776665555    66789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 010854          479 KLLRRVLRDQIKHEL  493 (499)
Q Consensus       479 Kv~r~~l~~~~~~~~  493 (499)
                      |++|++|++++++..
T Consensus       488 Ki~R~~L~~~~~~~~  502 (503)
T 4fuq_A          488 KVQKNVLRETYKDIY  502 (503)
T ss_dssp             CBCHHHHHHHTTTTT
T ss_pred             ceeHHHHHHHHHHhh
Confidence            999999999987653

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.4e-69  Score=561.59  Aligned_cols=475  Identities=25%  Similarity=0.352  Sum_probs=376.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCcccc---chhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP---LYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~   78 (499)
                      |++||+|+|+++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++......+..+   ........
T Consensus       129 v~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  208 (652)
T 1pg4_A          129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN  208 (652)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTS
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhc
Confidence            789999999999999999999999999999999999999999999999999999999876533211111   11222222


Q ss_pred             CC----CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           79 AP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        79 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                      .+    ...+++......... .......|.+++.....     ........++++++++|||||||.||||+++|++++
T Consensus       209 ~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~  282 (652)
T 1pg4_A          209 PNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL  282 (652)
T ss_dssp             TTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHH
T ss_pred             CCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCccccCCCCCEEEEeccCCCCCCceEEECchHHH
Confidence            11    122222211111110 01123457777654321     122234567999999999999999999999999987


Q ss_pred             HHhh-hcceeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854          155 RCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       155 ~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      ..+. .....++++++|++++..|++|.+++. .++.++++|+++++.+..   .++..+++.|+++++|+++++|++++
T Consensus       283 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~  362 (652)
T 1pg4_A          283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR  362 (652)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHH
Confidence            7654 344457889999999999999999984 589999999999998752   46789999999999999999999999


Q ss_pred             HHHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc--cCceeccccccceeeeeecCCCC-CCCccccccccCC
Q 010854          230 AWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATM  304 (499)
Q Consensus       230 ~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~  304 (499)
                      .|++...  ....++++||.++++||++++++.+++.+.+.  .+.+++.||+||++..+...... .....+++|.|++
T Consensus       363 ~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~  442 (652)
T 1pg4_A          363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF  442 (652)
T ss_dssp             HHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT
T ss_pred             HHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcC
Confidence            9998754  34567899999999999999999999988763  27899999999998765544322 2446689999999


Q ss_pred             CceEEEECCCCCCCCCCCCcceeeEe-c--ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEec
Q 010854          305 TAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG  381 (499)
Q Consensus       305 ~~~~~i~d~~g~~~~~g~~~~Gei~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~g  381 (499)
                      |++++|+|++|++++.|+  .|||+| +  +..+.+  ++.+++.+...|-    ...++||+|||+|++|+||+|+++|
T Consensus       443 g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~g--Y~~~~e~~~~~~~----~~~~g~y~TGDlg~~d~dG~l~i~G  514 (652)
T 1pg4_A          443 GVQPALVDNEGHPQEGAT--EGNLVITDSWPGQART--LFGDHERFEQTYF----STFKNMYFSGDGARRDEDGYYWITG  514 (652)
T ss_dssp             TCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCE--ETTCHHHHHHHHH----SSSTTSEEEEEEEEECTTSCEEEEE
T ss_pred             CCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhh--hcCCHHHHHhhhh----hcCCCEEECCcEEEEcCCCcEEEEe
Confidence            999999999999999998  599999 4  233332  2223332222221    1235799999999999999999999


Q ss_pred             ccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCce
Q 010854          382 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF  461 (499)
Q Consensus       382 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  461 (499)
                      |.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+ +++.+.++++++++|+.|+
T Consensus       515 R~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~  591 (652)
T 1pg4_A          515 RVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLA  591 (652)
T ss_dssp             ESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGG
T ss_pred             cCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999996 8999999999999988777 8999999998765433 3466678888889999999


Q ss_pred             eeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          462 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       462 ~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      .|..|+++++||+|++|||+|++|++.+.+++
T Consensus       592 ~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~  623 (652)
T 1pg4_A          592 TPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT  623 (652)
T ss_dssp             CCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             CCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence            99999999999999999999999999998753

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.8e-69  Score=551.96  Aligned_cols=464  Identities=19%  Similarity=0.172  Sum_probs=375.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.......+ 
T Consensus        74 v~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  147 (548)
T 2d1s_A           74 LVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTT  147 (548)
T ss_dssp             CCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTT
T ss_pred             CCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCC
Confidence            68999999999999999999999999999999999999999999999999999999987532      12222222222 


Q ss_pred             CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCC-CCCCCCC-CCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN-YYSPVYN-PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      ...++.. ....    ...+...+.++.........+. ...+... .++++++++|||||||.||||+++|+++...+.
T Consensus       148 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~  222 (548)
T 2d1s_A          148 IKTIVIL-DSKV----DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS  222 (548)
T ss_dssp             CCEEEET-TCSS----CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHH
T ss_pred             CCEEEEe-CCcc----cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHH
Confidence            1222221 1110    0112345667665432100000 0000011 238999999999999999999999999998887


Q ss_pred             hccee---ccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          159 EGWAH---IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       159 ~~~~~---~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      .....   ++++++|+++..+|++|.+++.. ++.++ .|+++++.+ .++++.+++.|+++++|+++++|+++..|.+.
T Consensus       223 ~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  300 (548)
T 2d1s_A          223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKS  300 (548)
T ss_dssp             HHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC
T ss_pred             HhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC
Confidence            76665   67889999999999999999877 66677 999999987 56889999999999999999999999999987


Q ss_pred             CCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-C
Q 010854          235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-E  313 (499)
Q Consensus       235 ~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~  313 (499)
                      ......+++++|.+++||+++++++.+.+...++++.+++.||+||++..+.... ......+++|+|+|+++++|+| +
T Consensus       301 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~  379 (548)
T 2d1s_A          301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLD  379 (548)
T ss_dssp             SCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTT
T ss_pred             cccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCC
Confidence            7666677899999999999999999999998887788999999999987655432 2334568999999999999999 8


Q ss_pred             CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      +|++++.|+  .|||+| ++..+.+  ++.+++.+...|      ..++||+|||+|++|++|+++++||.||+||++|+
T Consensus       380 ~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~  449 (548)
T 2d1s_A          380 TKKSLGPNR--RGEVCVKGPMLMKG--YVNNPEATKELI------DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY  449 (548)
T ss_dssp             TCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTC
T ss_pred             cCccCCCCC--CeEEEECCHHHhhh--hcCChHHhhhcc------cCCcEEEccCEEEEcCCCeEEEeccccceEEECCE
Confidence            999999999  599999 5555443  333444444444      24679999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeee-EEEEcCC
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPE  471 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~-~~~~~~~  471 (499)
                      +|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.++++++    ++++|+.|+.|. .++++++
T Consensus       450 ~v~p~eIE~~l~-~~p~V~~a~V~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~p~~~i~~v~~  523 (548)
T 2d1s_A          450 QVPPAELESVLL-QHPSIFDAGVAGVPDPVAG-ELPGAVVVLESGKNMTEKEVMDY----VASQVSNAKRLRGGVRFVDE  523 (548)
T ss_dssp             CBCHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HHTTSCGGGSCTTCEEECSS
T ss_pred             EECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eeeEEEEEEcCCCCCCHHHHHHH----HHHhccccccccccEEEccC
Confidence            999999999996 8999999999999988887 89999999987766666555555    667899999998 9999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          472 FPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       472 iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      ||+|++||++|++|++++++.+++
T Consensus       524 lP~t~~GKi~r~~L~~~~~~~i~~  547 (548)
T 2d1s_A          524 VPKGLTGKIDGRAIREILKKPVAK  547 (548)
T ss_dssp             CCBCTTSCBCHHHHHHHHHSCC--
T ss_pred             CCCCCcchhHHHHHHHHHhhhhhc
Confidence            999999999999999999887653

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.5e-69  Score=552.31  Aligned_cols=462  Identities=19%  Similarity=0.208  Sum_probs=356.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-   80 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-   80 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..    ....+.......+ 
T Consensus       108 v~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~  183 (580)
T 3etc_A          108 IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGD  183 (580)
T ss_dssp             CCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCC
Confidence            78999999999999999999999999999999999999999999999999999999987421    0011222222222 


Q ss_pred             --CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           81 --LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                        ...+.+.  ..     ...+..++.+.+...... ...........++|+++++|||||||.||+|+++|.++...+.
T Consensus       184 ~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~  255 (580)
T 3etc_A          184 IPLKKAKVG--GD-----VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHIL  255 (580)
T ss_dssp             CCCEEEEES--SS-----CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHH
T ss_pred             cceEEEEeC--Cc-----cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHH
Confidence              2222221  11     123445666665543321 0011111346789999999999999999999999998888777


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      .....+++.++++++...|++|..+.+. ++.++..|+++++.+ ..++++.+++.|+++++|+++++|++++.|++. .
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~  334 (580)
T 3etc_A          256 TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-D  334 (580)
T ss_dssp             HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-C
T ss_pred             HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-c
Confidence            6666678899999999999999988876 888999999998874 466889999999999999999999999999886 3


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ....++++||.++++||++++++.+++.+.+ ++++++.||+||++..+.... ......+++|+|+|+++++|+|++|+
T Consensus       335 ~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~  412 (580)
T 3etc_A          335 LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGR  412 (580)
T ss_dssp             C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSC
T ss_pred             cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCC
Confidence            4456789999999999999999999998765 789999999999986554433 33456789999999999999999999


Q ss_pred             CCCCCCCcceeeEec------ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          317 PYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       317 ~~~~g~~~~Gei~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                      +++.|+  .|||+|+      +..+.  .++.+++.+...|.       ++||+|||+|++|+||+|+++||.||+||++
T Consensus       413 ~~~~g~--~GEl~v~~~~g~~~~~~~--gY~~~p~~t~~~f~-------~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~  481 (580)
T 3etc_A          413 LCEVGE--EGEIVINTMEGKPVGLFV--HYGKDPERTEETWH-------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTS  481 (580)
T ss_dssp             BCCTTC--CEEEEEECTTCCCTTCCC--EETTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEESSSCEEET
T ss_pred             CCCCCC--ceEEEEecCCCCCCeeec--cccCCHhHHHhhcC-------CCEEecCcEEEECCCCcEEEEecCCCEEEEC
Confidence            999999  5999994      22332  24445555555553       4799999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.|||++|. .||+|.+++|++++++..+ +.++++|++.++...+ +++.+.+++++++.|+.|+.|+.+++++
T Consensus       482 G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~  558 (580)
T 3etc_A          482 GYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPS-DSLKNELQDHVKNVTAPYKYPRIIEFVP  558 (580)
T ss_dssp             TEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHSCGGGCCSEEEEEC
T ss_pred             CEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCccCCeEEEEeC
Confidence            99999999999996 8999999999999998888 9999999998876533 4566678888889999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhh
Q 010854          471 EFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +||+|++|||+|++|+++++++
T Consensus       559 ~lP~t~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          559 ELPKTISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             C---------------------
T ss_pred             CCCCCCCcCCcHHHHHhHhhcC
Confidence            9999999999999999988753

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.1e-69  Score=554.64  Aligned_cols=461  Identities=18%  Similarity=0.180  Sum_probs=338.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....      ..+.........
T Consensus        74 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~  147 (549)
T 3g7s_A           74 VRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV  147 (549)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999988542      222233333332


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCC-CCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG  160 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~  160 (499)
                      ..++...          ....++.++......     ........ ++++++++|||||||.||||+++|+++...+...
T Consensus       148 ~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  212 (549)
T 3g7s_A          148 ERVFVVG----------GEVNSLSEVMDSGSE-----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQL  212 (549)
T ss_dssp             CEEEEET----------CSSSCHHHHHHHSCS-----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHH
T ss_pred             cEEEEeC----------CCCcCHHHHHhcCcc-----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHH
Confidence            2222221          134466776654432     11122223 3899999999999999999999999999999888


Q ss_pred             ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc-
Q 010854          161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-  239 (499)
Q Consensus       161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~-  239 (499)
                      ...+++.++|+++..+|++|.+++..++.++..|+++++.+ .++++.+++.|+++++|+++++|+++..|++...... 
T Consensus       213 ~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  291 (549)
T 3g7s_A          213 AVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK  291 (549)
T ss_dssp             HHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC
T ss_pred             HHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc
Confidence            88889999999999999999999888888999999999987 5688999999999999999999999999987654333 


Q ss_pred             -ccccceeEEEeecCCCChhhHHHHHhh----cc--cCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC
Q 010854          240 -LDWTKIRSFASTGETSNVDDDLWLSSK----AW--YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       240 -~~l~~l~~i~~~G~~l~~~~~~~~~~~----~~--~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d  312 (499)
                       .+++++|.+++||+++++++.+.+...    +.  ..++++.||+||++..+............++|.|+++++++|+|
T Consensus       292 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d  371 (549)
T 3g7s_A          292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVIS  371 (549)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEEC
T ss_pred             cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEe
Confidence             678899999999999999999888766    32  27899999999999877766655556678999999999999999


Q ss_pred             -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                       ++|++++.|+  .|||+| ++..+.+  ++.+++.+...|...  .++.+||+|||+|++|++|+|+++||.||+||++
T Consensus       372 ~~~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~--~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  445 (549)
T 3g7s_A          372 LEDGRELGVGE--SGEIVIRGPNIFKG--YWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK  445 (549)
T ss_dssp             SSSCCEECTTC--CEEEEEESTTSCSE--ETTCTTGGGTSEEEC--TTCCEEEEEEEEEEECTTSCEEEEEEC-------
T ss_pred             CCCCcCCCCCC--ceEEEEECcchhhh--hCCChhhhhhhhhcc--CCCCceEccCcEEEEcCCceEEEeccccceEEEC
Confidence             9999999999  599999 6555543  333444444444211  1345699999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC--CCCCHHHHHHHHHHHHHhhcCCceeeeEEEE
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV  468 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~  468 (499)
                      |++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++  ...+.++++++    ++++|+.|+.|..+++
T Consensus       446 G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~  519 (549)
T 3g7s_A          446 GYTIAPFELEALLM-KHEAVMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDIIEW----VRERISGYKRVREVEF  519 (549)
T ss_dssp             -----CHHHHHHHT-TSTTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHH----HHTTCC-----CCCCE
T ss_pred             CEEECHHHHHHHHH-hCCCeeeEEEEeeEccccC-ceEEEEEEECCCccCcCCHHHHHHH----HHHhccCcccceEEEE
Confidence            99999999999996 9999999999999988888 899999999876  34455555554    6678999999999999


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHhhhhhc
Q 010854          469 VPEFPRTASNKLLRRVLRDQIKHELSVR  496 (499)
Q Consensus       469 ~~~iP~t~~GKv~r~~l~~~~~~~~~~~  496 (499)
                      +++||+|++|||+|++|++++.++-.++
T Consensus       520 v~~lP~t~~GKi~R~~L~~~~~~~~~~~  547 (549)
T 3g7s_A          520 VEELPRTASGKLLRRLLREKEAEGHHHH  547 (549)
T ss_dssp             EEECC-----------------------
T ss_pred             eccCCCCCCcCEeHHHHHHHhhcccccc
Confidence            9999999999999999999988765544

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.4e-68  Score=544.05  Aligned_cols=453  Identities=19%  Similarity=0.178  Sum_probs=380.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....     ...         
T Consensus        49 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~~~---------  114 (511)
T 3e7w_A           49 GEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI-----DAV---------  114 (511)
T ss_dssp             SSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT-----TCC---------
T ss_pred             CCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc-----hhc---------
Confidence            457899999999999999999999999999999999999999999999999999999663210     000         


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                    .......++.++......    .........++++++++|||||||.||+|+++|+++...+.+..
T Consensus       115 --------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  176 (511)
T 3e7w_A          115 --------------GQQIQTVSAEELLENEGG----SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC  176 (511)
T ss_dssp             --------------CCSSCEEEHHHHHTSCSC----CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH
T ss_pred             --------------ccccceecHhhhhccccC----CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH
Confidence                          000112334444433221    11122335678999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++.++|+++..+|++|.+++..++.+++.|+++++.+..  .++..+++.++++++|++.++|+++..++.......
T Consensus       177 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  256 (511)
T 3e7w_A          177 ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ  256 (511)
T ss_dssp             HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST
T ss_pred             HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc
Confidence            888999999999999999999988899999999999998642  467889999999999999999999999998877777


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      ..++++|.++++|+++++++.+.+.+.++++++++.||+||++..+......    ......++|.|.|+++++|+|++|
T Consensus       257 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g  336 (511)
T 3e7w_A          257 DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEG  336 (511)
T ss_dssp             TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTS
T ss_pred             ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCC
Confidence            7789999999999999999999999998889999999999998655433221    223456799999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.|+  +|||+| ++..+.+  ++.+++.+...|..   ..+.+||+|||+|++ +||+|+++||.||+||++|++|
T Consensus       337 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~---~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v  408 (511)
T 3e7w_A          337 QPLPEGE--KGEIVIAGPSVSRG--YLGEPELTEKAFFS---HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRM  408 (511)
T ss_dssp             CBCCTTC--CEEEEEESTTSCCC--BTTCHHHHHHHEEE---SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEE
T ss_pred             CCCCCCC--ceEEEEecCccChh--hCCCcccchhhhcC---CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEe
Confidence            9999999  599999 6655543  33444544444432   135668999999999 5999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||++|. .||+|.+++|++++++..+ +.++++|++.++...+..++.+.++++++++|+.|+.|..++++++||+
T Consensus       409 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~  486 (511)
T 3e7w_A          409 ELEEIEFHVR-QSQYVRSAVVIPYQPNGTV-EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQM  486 (511)
T ss_dssp             EHHHHHHHHH-HSTTEEEEEEEEECSSSSC-CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCB
T ss_pred             CHHHHHHHHH-hCCCcceEEEEEEcCCCCc-eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCC
Confidence            9999999996 8999999999999988777 8999999998876666667788888999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhhhhc
Q 010854          475 TASNKLLRRVLRDQIKHELSVR  496 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~~~~~~  496 (499)
                      |++|||+|++|++++.++-...
T Consensus       487 t~~GKi~R~~L~~~~~~~~~~~  508 (511)
T 3e7w_A          487 TANGKIDRKRIGEEVLVRSHHH  508 (511)
T ss_dssp             CTTSCBCHHHHHHHHHHHHTCC
T ss_pred             CCCcCccHHHHHhHHhhhcccc
Confidence            9999999999999998865443

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.7e-69  Score=549.72  Aligned_cols=456  Identities=18%  Similarity=0.168  Sum_probs=373.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.....     ..       . .
T Consensus        48 ~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~-----~~-------~-~  114 (512)
T 3fce_A           48 PDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV-----TD-------L-P  114 (512)
T ss_dssp             TTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS-----SC-------C-S
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc-----cc-------c-c
Confidence            689999999999999999999999999999999999999999999999999999999754210     00       0 0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ... .             ....+.++......   ..........++++++++|||||||.||+|+++|+++.+.+.+..
T Consensus       115 ~~~-~-------------~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~  177 (512)
T 3fce_A          115 VRI-V-------------SEDNLKDIFFTHKG---NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV  177 (512)
T ss_dssp             SEE-E-------------ETHHHHHHHHHTTT---CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH
T ss_pred             cce-e-------------chhhhhhhcccccc---cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH
Confidence            000 0             00112222211111   111122345679999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|++++.+|++|.+++..++.+++.|+++++.+..  .++..+++.++++++|++.++|+++..++.......
T Consensus       178 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  257 (512)
T 3fce_A          178 EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE  257 (512)
T ss_dssp             HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST
T ss_pred             HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc
Confidence            888999999999999999999998899999999999998742  467899999999999999999999999998877777


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG  315 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g  315 (499)
                      .+++++|.++++|+++++++.+.+.+.++++.+++.||+||++..+......    ......++|.|.++++++|+|++|
T Consensus       258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g  337 (512)
T 3fce_A          258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG  337 (512)
T ss_dssp             TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSS
T ss_pred             hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCC
Confidence            7889999999999999999999999998889999999999998765433222    122456899999999999999999


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.|+  .|||+| ++..+.+  ++.+++.+...|.   ..++++||+|||+|++ ++|++++.||.||+||++|++|
T Consensus       338 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v  409 (512)
T 3fce_A          338 TIAPDGE--KGEIVIVGPSVSVG--YLGSPELTEKAFT---MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRM  409 (512)
T ss_dssp             CBCCTTS--CEEEEEESTTSCSC--BTTCHHHHHHHEE---EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEE
T ss_pred             CCCCCCC--eEEEEEeccccChh--hcCCchhhhhccc---cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEE
Confidence            9999999  599999 6655543  3344444444442   1356789999999999 7999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~  474 (499)
                      +|.+||++|. .||+|.+++|+++++...+ +.++++|++.++...+..++.+.++++++++|+.|+.|+.++++++||+
T Consensus       410 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~  487 (512)
T 3fce_A          410 ELEEIEHHLR-ACSYVEGAVIVPIKKGEKY-DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPM  487 (512)
T ss_dssp             CHHHHHHHHH-HSTTEEEEEEEEEEETTEE-EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCB
T ss_pred             CHHHHHHHHH-hCCCcceEEEEEEecCCCc-eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCC
Confidence            9999999996 8999999999999887777 8899999998766556667778899999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhhhhcc
Q 010854          475 TASNKLLRRVLRDQIKHELSVRS  497 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~~~~~~~  497 (499)
                      |++||++|++|++.++++-...+
T Consensus       488 t~~GKi~R~~L~~~~~~~~~~~~  510 (512)
T 3fce_A          488 TPNGKVDRKKLLSEVTALEHHHH  510 (512)
T ss_dssp             CTTSSBCHHHHHHHHHC------
T ss_pred             CCCcChHHHHHHhhhhhcccccc
Confidence            99999999999999988776554

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=6.9e-69  Score=549.27  Aligned_cols=459  Identities=19%  Similarity=0.198  Sum_probs=367.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... ..............+.
T Consensus        72 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~  150 (539)
T 1mdb_A           72 IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPT  150 (539)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCC
Confidence            689999999999999999999999999999999999999999999999999999999875310 0000111122222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++.....          ..+.++......     ........++++++++|||||||.||||+++|+++.+.+....
T Consensus       151 ~~~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~  215 (539)
T 1mdb_A          151 LKNIIVAGEA----------EEFLPLEDLHTE-----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV  215 (539)
T ss_dssp             CCCEEEESCC----------TTSEEGGGCCCC-----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHH
T ss_pred             ccEEEEcCCc----------cchhhhhhcccc-----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHH
Confidence            1111111100          012222211111     1112345679999999999999999999999999999888887


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|++++.+|++|.+++..  ++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++......
T Consensus       216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  294 (539)
T 1mdb_A          216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR  294 (539)
T ss_dssp             HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred             HhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC
Confidence            7788999999999999999999864  889999999999987 4678999999999999999999999999988765556


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCC-ceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT-AGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~i~d~~g~~~  318 (499)
                      .+++++|.+++||+++++++.+++.+.+ ++.+++.||+||++..+...........+++|+|+++ .+++|+|++|+++
T Consensus       295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~  373 (539)
T 1mdb_A          295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV  373 (539)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC
T ss_pred             CCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCC
Confidence            6789999999999999999999888776 7899999999997644332221112345789999976 5899999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  +|||+| ++..+.+  ++.+++.+...|.      .++||+|||+|++|++|+|+++||.||+||++|++|+|.
T Consensus       374 ~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~------~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~  443 (539)
T 1mdb_A          374 KPGE--TGHLLTRGPYTIRG--YYKAEEHNAASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE  443 (539)
T ss_dssp             CTTC--CEEEEEECTTSCSS--CTTCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred             cCCC--cceEEeeCcccchh--hcCChhhhhhhcc------CCCCeecCceEEECCCCcEEEeccccceEEECCEEECHH
Confidence            9999  599999 6655543  3334444444442      357999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCceeeeEEEEcCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~p~~~~~~~~iP~t~  476 (499)
                      |||++|. .||+|.+++|++.+++..+ +.++++|++.+ ...+.+++.++    ++++ |+.|+.|..++++++||+|+
T Consensus       444 eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~l~~~----l~~~~L~~~~~P~~i~~v~~lP~t~  516 (539)
T 1mdb_A          444 EVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRD-EAPKAAELKAF----LRERGLAAYKIPDRVEFVESFPQTG  516 (539)
T ss_dssp             HHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS-SCCCHHHHHHH----HHHTTCCGGGSCSEEEECSSCCBCT
T ss_pred             HHHHHHH-hCCCcceEEEEeccccccC-ceEEEEEEECC-CCCCHHHHHHH----HHhCCCCcccCCCEEEEeccCCCCC
Confidence            9999996 9999999999999988777 89999999874 34455566555    4455 99999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhhh
Q 010854          477 SNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       477 ~GKv~r~~l~~~~~~~~~~  495 (499)
                      +||++|++|++++.+++++
T Consensus       517 ~GKi~r~~L~~~~~~~i~~  535 (539)
T 1mdb_A          517 VGKVSKKALREAISEKLLA  535 (539)
T ss_dssp             TSCBCHHHHHHHHHHHHHT
T ss_pred             CcCEeHHHHHHHHHHHHhc
Confidence            9999999999999988765

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.4e-69  Score=547.22  Aligned_cols=450  Identities=22%  Similarity=0.210  Sum_probs=365.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....      +...........
T Consensus        65 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  138 (517)
T 3r44_A           65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADP  138 (517)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSC
T ss_pred             CCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCC
Confidence            68999999999999999999999999999999999999999999999999999999987532      122222211111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++..          .....+.+.......     ........++++++++|||||||.||||+++|+++.+.+....
T Consensus       139 ~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  203 (517)
T 3r44_A          139 PGTVTDW----------IGADSLAERLRSAAA-----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA  203 (517)
T ss_dssp             CTTCCEE----------EEHHHHHHHHHHCCC-----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHH
T ss_pred             ccEEEEc----------cCcccHHHHhhccCc-----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHH
Confidence            0000000          001123333332221     1223345689999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++++|++++.+|++|.+++...+.+++.|+++++.+ .+++..+++.++++++|++.++|+++..|.+.......+
T Consensus       204 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  282 (517)
T 3r44_A          204 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD  282 (517)
T ss_dssp             HHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC
T ss_pred             HhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC
Confidence            8889999999999999999999987555555999999987 568899999999999999999999999998876666677


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPD  320 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~~  320 (499)
                      ++++|.+++||+++++++.+.+...  ++++++.||+||++...+..... .....+++|.|.++++++++|++|.+++.
T Consensus       283 ~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~  360 (517)
T 3r44_A          283 APDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH  360 (517)
T ss_dssp             CTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESS
T ss_pred             CCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCC
Confidence            8999999999999999999988765  78999999999997655443332 24566899999999999999999999988


Q ss_pred             CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854          321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI  399 (499)
Q Consensus       321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i  399 (499)
                      |.   |||+| ++..+.+  ++.+++.+...|       .++||+|||+|++|++|+|+++||.||+||++|++|+|.||
T Consensus       361 g~---GEl~v~g~~v~~G--Y~~~p~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI  428 (517)
T 3r44_A          361 GE---GEVVIKSDILLKE--YWNRPEATRDAF-------DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEI  428 (517)
T ss_dssp             EE---EEEEEEETTSCSE--ETTCHHHHHHTE-------ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHH
T ss_pred             CC---eEEEEeCcchhhh--hCCChhhhHhhh-------cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHH
Confidence            83   99999 6555543  334455554445       25799999999999999999999999999999999999999


Q ss_pred             HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854          400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK  479 (499)
Q Consensus       400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK  479 (499)
                      |++|. .||+|.+++|++.+++..+ +.++++| ..++...+.++++++    ++++|+.|+.|..++++++||+|++||
T Consensus       429 E~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~v-~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~GK  501 (517)
T 3r44_A          429 ESVII-GVPGVSEVAVIGLPDEKWG-EIAAAIV-VADQNEVSEQQIVEY----CGTRLARYKLPKKVIFAEAIPRNPTGK  501 (517)
T ss_dssp             HHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEE-EECTTTCCHHHHHHH----HHHHSCGGGSCSEEEECSCCCBCTTCC
T ss_pred             HHHHH-hCCCEeEEEEEeccccccC-ceEEEEE-ECCCCCCCHHHHHHH----HHHhCCCCCCCCEEEEECCCCCCCCcC
Confidence            99996 9999999999999988887 8888888 555555566666555    557899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 010854          480 LLRRVLRDQIKHELS  494 (499)
Q Consensus       480 v~r~~l~~~~~~~~~  494 (499)
                      ++|++|+++|.+++.
T Consensus       502 i~R~~L~~~~~~~~~  516 (517)
T 3r44_A          502 ILKTVLREQYSATVP  516 (517)
T ss_dssp             BCHHHHHHHHGGGCC
T ss_pred             ccHHHHHHHHHhhcc
Confidence            999999999987753

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.8e-68  Score=555.66  Aligned_cols=475  Identities=23%  Similarity=0.358  Sum_probs=371.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccc---hhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL---YSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~   78 (499)
                      |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...+..+..+.   +......
T Consensus       136 v~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~  215 (663)
T 1ry2_A          136 VRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE  215 (663)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999999999998865332222111   1222222


Q ss_pred             CCC--ceEEecccCC-CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854           79 APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR  155 (499)
Q Consensus        79 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~  155 (499)
                      .+.  ..+++..... .... .......|.++......     ........++++++|+|||||||.||||+++|.++..
T Consensus       216 ~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~  289 (663)
T 1ry2_A          216 TPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT-----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLL  289 (663)
T ss_dssp             CTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS-----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHH
T ss_pred             CCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC-----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHH
Confidence            222  2222221111 1110 01123456776653221     1223345679999999999999999999999999876


Q ss_pred             Hhh-hcceeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          156 CTA-EGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      .+. .....++++++|++++..|++|..++. .++.+++.|+++++.+..   .++..+++.|+++++|+++++|++++.
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~  369 (663)
T 1ry2_A          290 GALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRL  369 (663)
T ss_dssp             HHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHH
Confidence            654 334457889999999999999999984 488999999999998752   467899999999999999999999999


Q ss_pred             HHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc--cCceeccccccceeeeeecCCC--CCCCccccccccCC
Q 010854          231 WRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATM  304 (499)
Q Consensus       231 l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~--~~~~~~~~~g~~~~  304 (499)
                      |++...  ....++++||.++++||++++++.+++.+.+.  .+.+++.||+||++..+.....  ......+++|.|++
T Consensus       370 l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~  449 (663)
T 1ry2_A          370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF  449 (663)
T ss_dssp             HTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred             HHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence            988764  34567899999999999999999999988763  2789999999999866554432  23456789999999


Q ss_pred             CceEEEECC-CCCCCCC-CCCcceeeEe-cc--cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEE
Q 010854          305 TAGLVILDE-CGVPYPD-DQPCVGEVGL-FP--LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV  379 (499)
Q Consensus       305 ~~~~~i~d~-~g~~~~~-g~~~~Gei~v-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~  379 (499)
                      |++++|+|+ +|++++. |+  .|||++ ++  ..+.+  ++.+++.+...|.    .+.++||+|||+|++|+||+|++
T Consensus       450 g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~g--y~~~~~~~~~~~~----~~~~g~y~TGDlg~~d~dG~l~i  521 (663)
T 1ry2_A          450 GIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFART--IWKNHDRYLDTYL----NPYPGYYFTGDGAAKDKDGYIWI  521 (663)
T ss_dssp             TCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCE--ETTCHHHHHHHHT----SSSTTSEEEEEEEEECTTCCEEE
T ss_pred             CCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhcc--cccChHHHHHhhh----cCCCCEEEcCCEEEEcCCCCEEE
Confidence            999999997 9999988 77  599999 42  33332  2333333222221    12357999999999999999999


Q ss_pred             ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC---CCHH---HHHHHHHHHH
Q 010854          380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT---SQPD---KLKMIFSKAI  453 (499)
Q Consensus       380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~~~~  453 (499)
                      +||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|+++++..   ...+   ++.+.+++++
T Consensus       522 ~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l  599 (663)
T 1ry2_A          522 LGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV  599 (663)
T ss_dssp             CSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC------------CCSHHHHHHHHH
T ss_pred             EeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHH
Confidence            9999999999999999999999996 9999999999999988777 88999999987643   2112   4667788888


Q ss_pred             HhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       454 ~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +++|++|+.|..|+++++||+|++||++|++|++++.++
T Consensus       600 ~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          600 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             HHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             HHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence            899999999999999999999999999999999988765

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=5.1e-69  Score=551.90  Aligned_cols=466  Identities=17%  Similarity=0.184  Sum_probs=279.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.......+.
T Consensus        72 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  145 (550)
T 3rix_A           72 LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPI  145 (550)
T ss_dssp             CCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTT
T ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999988532      222233333332


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ...++......    ......++.++..........  .........++++++++|||||||.||||+++|+++...+..
T Consensus       146 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~  221 (550)
T 3rix_A          146 IQKIIIMDSKT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH  221 (550)
T ss_dssp             CCEEEETTCSS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred             cceEEEEcCCc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHH
Confidence            22222221111    123445666666543321110  111112234588999999999999999999999999888776


Q ss_pred             ccee---ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          160 GWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       160 ~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      ....   +++.+++++++.+|++|.+++..++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++...
T Consensus       222 ~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  300 (550)
T 3rix_A          222 ARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL  300 (550)
T ss_dssp             HTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG
T ss_pred             hhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc
Confidence            6554   57889999999999999999988889999999999986 5678999999999999999999999999999887


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECG  315 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g  315 (499)
                      ..+.+++++|.+++||+++++++.+++.+.++...+++.||+||++..+..... .....+++|+|+|+++++|+| ++|
T Consensus       301 ~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~  379 (550)
T 3rix_A          301 IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTG  379 (550)
T ss_dssp             GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTC
T ss_pred             ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCC
Confidence            777889999999999999999999999988754569999999999876655443 345668999999999999999 789


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.|+  .|||+| ++..+.+  ++.+++.+...|      +.++||+|||+|++|++|+++++||.||+||++|++|
T Consensus       380 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~~------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v  449 (550)
T 3rix_A          380 KTLGVNQ--RGELCVRGPMIMSG--YVNNPEATNALI------DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV  449 (550)
T ss_dssp             CBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEC--------------
T ss_pred             cCCCCCC--CeEEEEeCCCcchh--hcCChhhhhhhc------CCCCCeecCcEEEEeCCceEEEEecchheeEECCEEE
Confidence            9999999  599999 6655543  334444444444      3567999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee-eEEEEcCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFP  473 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p-~~~~~~~~iP  473 (499)
                      +|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.+++.++    ++++|+.|+.| ..++++++||
T Consensus       450 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~~~~~i~~v~~lP  523 (550)
T 3rix_A          450 APAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDY----VASQVTTAKKLRGGVVFVDEVP  523 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHH-hCCCcceEEEEEeecCCCC-ceEEEEEEecCCCCCCHHHHHHH----HHHhcccccccCCceEEEeecC
Confidence            9999999996 8999999999999998888 89999999887766666666655    45677777666 5799999999


Q ss_pred             CCCCcHHHHHHHHHHHHhhhhh
Q 010854          474 RTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      +|++||++|++|++++.++.+.
T Consensus       524 ~t~~GKi~r~~L~~~~~~~~~~  545 (550)
T 3rix_A          524 KGLTGKLDARKIREILIKAKKG  545 (550)
T ss_dssp             ----------------------
T ss_pred             CCCCcceeHHHHHHHHHhhccc
Confidence            9999999999999999876544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.8e-67  Score=534.95  Aligned_cols=440  Identities=19%  Similarity=0.165  Sum_probs=354.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEe--cccccccCccccchhhhhhcC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAA   79 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~   79 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+|+  +....         .......
T Consensus        51 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~  121 (504)
T 1t5h_X           51 LRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSG  121 (504)
T ss_dssp             CCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhcc
Confidence            689999999999999999999999999999999999999999999999999999999  55321         1110111


Q ss_pred             CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ....+ +                .+.++...................++++++++|||||||.||||+++|+++.+.+..
T Consensus       122 ~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~  184 (504)
T 1t5h_X          122 SGARI-I----------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF  184 (504)
T ss_dssp             CCCEE-E----------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHH
T ss_pred             cccee-E----------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHH
Confidence            11111 1                122222211000000111113456799999999999999999999999999988877


Q ss_pred             cceeccC--cCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          160 GWAHIDL--KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       160 ~~~~~~~--~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      ....+++  .++|++++.+|++|.+++.. ++.+++.|+++++.+ .+++..+++.|+++++|+++++|+++..|++...
T Consensus       185 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  263 (504)
T 1t5h_X          185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAA  263 (504)
T ss_dssp             HHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHC
T ss_pred             HHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhc
Confidence            7766777  88999999999999999854 889999999999987 4678999999999999999999999999987652


Q ss_pred             --CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCC
Q 010854          237 --LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC  314 (499)
Q Consensus       237 --~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~  314 (499)
                        ....+++++|.+++||+++++++.+.+...+ +..+++.||+||++..+...    ....+++|.|.++++++++|+.
T Consensus       264 ~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~----~~~~~~~g~p~~~~~~~i~~~~  338 (504)
T 1t5h_X          264 HAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMR----QPKTGTEMAPGFFSEVRIVRIG  338 (504)
T ss_dssp             CTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEE----SCSSSSEEBCCTTCCEEEECTT
T ss_pred             cccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccccccccc----CCCCCccccCCCCCceeEEecc
Confidence              2445688999999999999999999998876 67899999999984333221    2355789999999999999987


Q ss_pred             C---CCCCCCCCcceeeEec-c-cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee
Q 010854          315 G---VPYPDDQPCVGEVGLF-P-LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL  389 (499)
Q Consensus       315 g---~~~~~g~~~~Gei~v~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~  389 (499)
                      +   ++++.|+  .|||+|+ . ..+.  .++.+++.+...|.       ++||+|||+|++|+||+|+++||.||+||+
T Consensus       339 ~~~~~~~~~g~--~GEl~v~gg~~~~~--GY~~~~~~t~~~f~-------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~  407 (504)
T 1t5h_X          339 GGVDEIVANGE--EGELIVAASDSAFV--GYLNQPQATAEKLQ-------DGWYRTSDVAVWTPEGTVRILGRVDDMIIS  407 (504)
T ss_dssp             SCTTCBCCTTC--CEEEEEECCTTSCC--CBTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEE
T ss_pred             CCCCCcCCCCC--cceEEEeCCceeec--eecCCchhhhhhhc-------CCccccCcEEEECCCceEEEeCcccCEEEE
Confidence            7   8999998  5999995 3 2222  23344444444442       469999999999999999999999999999


Q ss_pred             CceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEE
Q 010854          390 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKV  468 (499)
Q Consensus       390 ~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~  468 (499)
                      +|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.+++.++    +++ +|+.|+.|+++++
T Consensus       408 ~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~~L~~~~~P~~i~~  481 (504)
T 1t5h_X          408 GGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTF----CRSSELADFKRPKRYFI  481 (504)
T ss_dssp             TTEEECHHHHHHHHT-TSTTEEEEEEEEEECSSSS-EEEEEEEEECTTCCCCHHHHHHH----HHTSSCCGGGSCSEEEE
T ss_pred             CCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-cEEEEEEEecCCcCcCHHHHHHH----HhhccCcccccceEEEE
Confidence            999999999999996 9999999999999998888 99999999987766666666555    556 8999999999999


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHH
Q 010854          469 VPEFPRTASNKLLRRVLRDQIK  490 (499)
Q Consensus       469 ~~~iP~t~~GKv~r~~l~~~~~  490 (499)
                      +++||+|++|||+|++|+++++
T Consensus       482 v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          482 LDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             CSCCCBCTTSCBCHHHHHHHHC
T ss_pred             hhhCCCCCCCCEeHHHHHHHhc
Confidence            9999999999999999999874

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=6.4e-69  Score=549.74  Aligned_cols=458  Identities=22%  Similarity=0.223  Sum_probs=334.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      +.+.......+.
T Consensus        69 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  142 (541)
T 1v25_A           69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKT  142 (541)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSS
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999987542      122222222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh--
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE--  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~--  159 (499)
                      ...++......     ......+.++......        .....++++++++|||||||.||||+++|+++......  
T Consensus       143 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  209 (541)
T 1v25_A          143 VQHFVVMDEKA-----PEGYLAYEEALGEEAD--------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS  209 (541)
T ss_dssp             CCEEEESSSCC-----CTTCEEHHHHCCSCCC--------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT
T ss_pred             ccEEEEecCCC-----CcccccHHHHhhccCC--------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh
Confidence            22222111111     1123356665443221        12345789999999999999999999999999876654  


Q ss_pred             cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ....++++++|++++.+|++|.+++..++.+++.|+++++.+..++++.+++.++++++|++.++|+++..|++......
T Consensus       210 ~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (541)
T 1v25_A          210 LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG  289 (541)
T ss_dssp             STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred             hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC
Confidence            33456788999999999999999987788899999999998766688999999999999999999999999988655455


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------CCccccccccCCCceEE
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLV  309 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~  309 (499)
                      .+++++|.+++||+++++++.+.+ ..+ ++++++.||+||++..++......          .....++|+|+|+++++
T Consensus       290 ~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  367 (541)
T 1v25_A          290 HRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR  367 (541)
T ss_dssp             CCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred             CcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEE
Confidence            678899999999999999999988 454 789999999999987665443221          02357899999999999


Q ss_pred             EECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeee
Q 010854          310 ILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN  388 (499)
Q Consensus       310 i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~  388 (499)
                      |+|++|++++.+...+|||+| ++..+.+  ++.+++.+...|.      .++||+|||+|++|++|+|+++||.||+||
T Consensus       368 i~d~~g~~~~~~~~~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~------~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik  439 (541)
T 1v25_A          368 VADEEGRPVPKDGKALGEVQLKGPWITGG--YYGNEEATRSALT------PDGFFRTGDIAVWDEEGYVEIKDRLKDLIK  439 (541)
T ss_dssp             EECTTSCBCCSSSCCCEEEEEESTTSBSS--CBTCHHHHHTTBC------TTSCEEEEEEEEECTTCCEEEEEESSCEEE
T ss_pred             EECCCCCCCCCCCCcceEEEEeCcchhcc--ccCChhhhhhhcc------CCCCeEcCCEEEEcCCceEEEeecccceee
Confidence            999999999853111599999 6655543  3334444444442      367999999999999999999999999999


Q ss_pred             eCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEE
Q 010854          389 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVK  467 (499)
Q Consensus       389 ~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~  467 (499)
                      ++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++. +...+.+++.++    +.+ +|+.|+.|..++
T Consensus       440 ~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~~----~~~~~L~~~~~P~~i~  512 (541)
T 1v25_A          440 SGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPR-GEKPTPEELNEH----LLKAGFAKWQLPDAYV  512 (541)
T ss_dssp             ETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC------------------------CCCTTTSCSBC-
T ss_pred             eCCEEECHHHHHHHHH-hCCCceEEEEEEecCCCcC-ceEEEEEEEC-CCCCCHHHHHHH----HHhccCccccCCcEEE
Confidence            9999999999999996 8999999999999998888 8999999876 333344445444    555 899999999999


Q ss_pred             EcCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          468 VVPEFPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       468 ~~~~iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      ++++||+|++||++|++|++.+++++++
T Consensus       513 ~v~~lP~t~~GKi~r~~L~~~~~~~~~~  540 (541)
T 1v25_A          513 FAEEIPRTSAGKFLKRALREQYKNYYGG  540 (541)
T ss_dssp             -------------CCTTHHHHSTTSSCC
T ss_pred             EeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence            9999999999999999999998876543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=3.7e-67  Score=539.02  Aligned_cols=457  Identities=22%  Similarity=0.277  Sum_probs=368.9

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.......+.
T Consensus        96 v~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  169 (570)
T 3c5e_A           96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPS  169 (570)
T ss_dssp             CCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTT
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCc
Confidence            68999999999999999999999999999999999999999999999999999999987532      122222222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH--Hhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~--~~~~  159 (499)
                      ...++......     ..+...+.+++.....     ........++++++++|||||||.||||+++|+ ++.  ....
T Consensus       170 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~  238 (570)
T 3c5e_A          170 LRIKLLVSEKS-----CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD  238 (570)
T ss_dssp             CCEEEEESSSC-----CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH
T ss_pred             eeEEEEecccC-----ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh
Confidence            21222111110     1123456666554322     111233567999999999999999999999999 444  3333


Q ss_pred             cceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                      . ..++++++|+++..+|++|.+++.. ++.+++.|+++++.+. .+++..+++.|+++++|+++++|++++.|++.. .
T Consensus       239 ~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~  316 (570)
T 3c5e_A          239 A-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-L  316 (570)
T ss_dssp             T-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-T
T ss_pred             h-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-c
Confidence            3 5678899999999999999999874 8899999999999864 567899999999999999999999999998863 3


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      ...+++++|.++++|+++++++.+.+...+ ++++++.||+||++..+.... ......+++|.|+++++++|+|++|++
T Consensus       317 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~  394 (570)
T 3c5e_A          317 SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNV  394 (570)
T ss_dssp             TTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCB
T ss_pred             cccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCC
Confidence            345678999999999999999999998776 788999999999986554433 223456899999999999999999999


Q ss_pred             CCCCCCcceeeEec------ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854          318 YPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG  391 (499)
Q Consensus       318 ~~~g~~~~Gei~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G  391 (499)
                      ++.|+  +|||+|.      +..+.  +++.+++.+...|.       ++||+|||+|++|++|+|+++||.||+||++|
T Consensus       395 ~~~G~--~GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G  463 (570)
T 3c5e_A          395 LPPGT--EGDIGIRVKPIRPIGIFS--GYVDNPDKTAANIR-------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSG  463 (570)
T ss_dssp             CCTTC--CEEEEEECSSBCCTTCCC--EETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETT
T ss_pred             CCCCC--CCeeEEeccCCCCchhhc--cccCChhHhhhhhc-------CCccccceeEEEcCCceEEEEecCCCEEEECC
Confidence            99999  5999994      22222  23334444444442       47999999999999999999999999999999


Q ss_pred             eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       392 ~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      ++|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++.. .+.+.+.+.++++++++|+.|+.|..|++++
T Consensus       464 ~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~  541 (570)
T 3c5e_A          464 YRIGPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVL  541 (570)
T ss_dssp             EEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEES
T ss_pred             EEECHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEec
Confidence            9999999999996 8999999999999988777 89999999876532 2345567778888889999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhh
Q 010854          471 EFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      +||+|++||++|++|++.+.+.
T Consensus       542 ~lP~t~~GKi~R~~L~~~~~~~  563 (570)
T 3c5e_A          542 NLPKTVTGKIQRAKLRDKEWKM  563 (570)
T ss_dssp             CCCBCTTCCBCHHHHHHHHTC-
T ss_pred             cCCCCCCcCCcHHHHHHHHHhh
Confidence            9999999999999999988654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.6e-68  Score=547.19  Aligned_cols=460  Identities=18%  Similarity=0.201  Sum_probs=282.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++..... ................
T Consensus        77 v~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~  155 (544)
T 3o83_A           77 LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV-FSNNQFIDSLHDVNLS  155 (544)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG-GSSSHHHHHHHHTTCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc-ccHHHHHHHHhhcccC
Confidence            689999999999999999999999999999999999999999999999999999999875310 0011111122222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++......       ....+.++......    .........++++++++|||||||.||||+++|+++...+....
T Consensus       156 ~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~  224 (544)
T 3o83_A          156 PEIILMLNHQA-------TDFGLLDWIETPAE----TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASA  224 (544)
T ss_dssp             CSEEEEETCCT-------TSEEHHHHHHSCCS----SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHH
T ss_pred             cceEEEecCCc-------cccchhhhhhcccc----cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHH
Confidence            22222111110       11234444433221    11112345689999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++.++|++++.+|++|.+++..  ++.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..|++......
T Consensus       225 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  303 (544)
T 3o83_A          225 EICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK  303 (544)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred             HHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc
Confidence            8889999999999999999998764  889999999999987 4678999999999999999999999999998877667


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~~~  318 (499)
                      .+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+............++|.|+ ++++++|+|++++++
T Consensus       304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~  382 (544)
T 3o83_A          304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV  382 (544)
T ss_dssp             HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBC
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCC
Confidence            7789999999999999999999998776 78999999999988655443333333457899996 899999999999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.|+  +|||+| ++..+.+  ++.+++.+...|      ..++||+|||+|++|++|+++++||.||+||++|++|+|.
T Consensus       383 ~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~  452 (544)
T 3o83_A          383 PEGE--IGMLATRGPYTFCG--YYQSPEHNSQVF------DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASE  452 (544)
T ss_dssp             CTTC--CEEEEEECTTSCSC--CTTCHHHHHHHB------CTTCCEEEEEEEEECTTSCEEEEEEEC-------------
T ss_pred             CCCC--eeEEEEecCCcchh--hcCChhhhhhhC------CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHH
Confidence            9999  599999 6555443  334444444444      3467999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEEcCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      |||++|. .||+|.+++|++++++..+ +.++++|+..+. ..+.++++++    +.+ .|+.|+.|..++++++||+|+
T Consensus       453 eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~lP~t~  525 (544)
T 3o83_A          453 EIEKLIL-LHPEVMHAALVAIVDEQFG-EKSCAFIVSRNP-ELKAVVLRRH----LMELGIAQYKLPDQIKLIESLPLTA  525 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH-hCCCccEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHH----HHhCCCCcccCCcEEEEeccCCCCC
Confidence            9999996 8999999999999998888 889999987752 2344444444    445 799999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhh
Q 010854          477 SNKLLRRVLRDQIKHE  492 (499)
Q Consensus       477 ~GKv~r~~l~~~~~~~  492 (499)
                      +||++|++|++++++.
T Consensus       526 ~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          526 VGKVDKKQLRSILNTS  541 (544)
T ss_dssp             ----------------
T ss_pred             CCCCcHHHHHHHHhhc
Confidence            9999999999988764

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=9.6e-68  Score=539.65  Aligned_cols=457  Identities=15%  Similarity=0.128  Sum_probs=360.1

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.......             .
T Consensus        51 ~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-------------~  117 (521)
T 3l8c_A           51 LLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-------------G  117 (521)
T ss_dssp             CCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-------------T
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-------------c
Confidence            689999999999999999999999999999999999999999999999999999999875321000             0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                                       .....+.++......  ...........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus       118 -----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  178 (521)
T 3l8c_A          118 -----------------ISLVSLSEIESAKLA--EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI  178 (521)
T ss_dssp             -----------------SEEEEHHHHHHHHHH--TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHH
T ss_pred             -----------------Ccccchhhhhhcccc--cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHh
Confidence                             011122222111100  0011123345689999999999999999999999999998777665


Q ss_pred             ee--ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          162 AH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       162 ~~--~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                      ..  +++..+++++...|++|..++..++.+++.|+++++.+..  .++..+++.++++++|++.++|+++..++.....
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  258 (521)
T 3l8c_A          179 EDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF  258 (521)
T ss_dssp             HCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC
T ss_pred             hccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc
Confidence            54  6788999999999999999988899999999999998743  2678899999999999999999999999888776


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDE  313 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~  313 (499)
                      ...+++++|.++++|+++++++.+.+.+.++++++++.||+||++..++.....    ......++|+|+|+++++|+|+
T Consensus       259 ~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~  338 (521)
T 3l8c_A          259 CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE  338 (521)
T ss_dssp             STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECT
T ss_pred             ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECC
Confidence            777789999999999999999999999898889999999999998755433221    1224568999999999999999


Q ss_pred             CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854          314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI  392 (499)
Q Consensus       314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~  392 (499)
                      +|++++.|+  .|||+| ++..+.+  ++.+++.+...|..   .++++||+|||+|++|++|++++.||.||+||++|+
T Consensus       339 ~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~---~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~  411 (521)
T 3l8c_A          339 DGKELSSGE--QGEIIVTGPAVSKG--YLNNPEKTAEAFFT---FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGY  411 (521)
T ss_dssp             TSCBCCTTC--CEEEEEESTTSCSC--BTTCHHHHHHHEEE---ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC----
T ss_pred             CcCCCCCCC--ceEEEecccccChh--hcCCchHhhccCcC---CCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCE
Confidence            999999999  599999 6655543  33444544444421   246789999999999999999999999999999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCceeeeEEEEc
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLVKVV  469 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~~~p~~~~~~  469 (499)
                      +|+|.+||++|. .||+|.+++|++..+...+.+.++++|++.++...   ...++.+.++++++++|+.|+.|..++++
T Consensus       412 ~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v  490 (521)
T 3l8c_A          412 RIELEDVSQQLN-QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYR  490 (521)
T ss_dssp             -CBHHHHHHHHH-TSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEEC
T ss_pred             EeCHHHHHHHHH-cCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEe
Confidence            999999999996 89999999999887654433889999999876432   22345677888899999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhhhhccC
Q 010854          470 PEFPRTASNKLLRRVLRDQIKHELSVRSR  498 (499)
Q Consensus       470 ~~iP~t~~GKv~r~~l~~~~~~~~~~~~~  498 (499)
                      ++||+|++|||+|++|+++++++..+.+|
T Consensus       491 ~~lP~t~~GKidr~~L~~~~~~~~~~~~~  519 (521)
T 3l8c_A          491 DSLPLTPNGKIDIKTLINEVNNREGHHHH  519 (521)
T ss_dssp             SSCCBCTTSSBCHHHHHHHTC--------
T ss_pred             cccCCCCCcCccHHHHhhhhhcCCccccC
Confidence            99999999999999999999887766543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=3.2e-66  Score=529.20  Aligned_cols=454  Identities=22%  Similarity=0.244  Sum_probs=355.3

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.........
T Consensus        70 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  143 (529)
T 2v7b_A           70 VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEH  143 (529)
T ss_dssp             CCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC--
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccc
Confidence            68999999999999999999999999999999999999999999999999999999987532      112222211111


Q ss_pred             --ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhh-HHHhh
Q 010854           82 --KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTA  158 (499)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~-~~~~~  158 (499)
                        ..++.......    .......++++......     ........++|+++++|||||||.||+|+++|+++ .....
T Consensus       144 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~  214 (529)
T 2v7b_A          144 DGCQLIVSQPRES----EPRLAPLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAEL  214 (529)
T ss_dssp             -CCEEEEECC----------CCCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred             cCceEEEeccccc----ccccccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHH
Confidence              11221111100    01112356666543221     11223456799999999999999999999999999 66666


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL  237 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  237 (499)
                      .....+++.++|+++..+|++|.+++.. ++.+++.|+++++.+..++++.+++.++++++|++.++|+++..+++....
T Consensus       215 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  294 (529)
T 2v7b_A          215 YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL  294 (529)
T ss_dssp             TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC
T ss_pred             HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc
Confidence            6666778999999999999999999876 778999999999886567889999999999999999999999999887554


Q ss_pred             CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854          238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      ......++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+...... ....+++|+|+++++++|+|++|++
T Consensus       295 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~  372 (529)
T 2v7b_A          295 PARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHA  372 (529)
T ss_dssp             CCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCB
T ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCC
Confidence            433123899999999999999999998776 78999999999997655444332 2456889999999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      ++.|+  +|||+| ++..+.+  ++.+++.+...|.       ++||+|||+|+++++|+++++||.||+||++|++|+|
T Consensus       373 ~~~g~--~GEl~v~g~~~~~g--Y~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p  441 (529)
T 2v7b_A          373 VPDGE--VGDLYIKGPSAAVM--YWNNREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSP  441 (529)
T ss_dssp             CCTTS--CEEEEEECTTCCCC--BTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCH
T ss_pred             CCCCC--ccEEEEecCCcccc--cCCChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECH
Confidence            99999  599999 5555443  3444444444443       4699999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. .||+|.+++|++. ++..+ +.++++|++.++... .+.+.+.++++++++|+.|+.|..++++++||+|+
T Consensus       442 ~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~~~~a~vv~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~  517 (529)
T 2v7b_A          442 VEVEMVLV-QHDAVLEAAVVGV-DHGGL-VKTRAFVVLKREFAP-SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTA  517 (529)
T ss_dssp             HHHHHHHT-TSTTEEEEEEEEE-EETTE-EEEEEEEEECTTCCC-CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCT
T ss_pred             HHHHHHHH-hCCCcceEEEEEe-cCCCc-eEEEEEEEecCCCCc-chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCC
Confidence            99999996 8999999999999 55555 889999998765321 23344567778889999999999999999999999


Q ss_pred             CcHHHHHHHHH
Q 010854          477 SNKLLRRVLRD  487 (499)
Q Consensus       477 ~GKv~r~~l~~  487 (499)
                      +||++|++|++
T Consensus       518 ~GKi~r~~L~~  528 (529)
T 2v7b_A          518 TGKIQRFKLRE  528 (529)
T ss_dssp             TSCBCHHHHHC
T ss_pred             ccchhHHhHhh
Confidence            99999999985

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1e-66  Score=534.94  Aligned_cols=437  Identities=17%  Similarity=0.158  Sum_probs=352.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.......      .+ . ...
T Consensus        86 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~------~~-~-~~~  157 (563)
T 1amu_A           86 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH------NI-Q-FNG  157 (563)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT------TS-C-CCS
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhh------hc-c-ccC
Confidence            689999999999999999999999999999999999999999999999999999999875321100      00 0 001


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+.  ...              +.. ..     .........++|+++++|||||||.||||+++|+++.+.+....
T Consensus       158 ~~~~~~--~~~--------------~~~-~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  215 (563)
T 1amu_A          158 QVEIFE--EDT--------------IKI-RE-----GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE  215 (563)
T ss_dssp             EEEECC--CST--------------TTT-SC-----CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH
T ss_pred             ceeeec--chh--------------hcc-cc-----CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            111110  000              000 00     00111234578999999999999999999999999998888777


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..++++++|++++.+|++|..++..++.+++.|+++++.+..  .++..+++.++++++|++.++|+++..+...     
T Consensus       216 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-----  290 (563)
T 1amu_A          216 NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-----  290 (563)
T ss_dssp             HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-----
T ss_pred             HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-----
Confidence            778899999999999999999988888999999999998642  4678899999999999999999999877532     


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC--CCCccccccccCCCceEEEECCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                       .++++|.+++||+++++++.+.+...   +.+++.||+||++..+......  ......++|+|+++++++|+|++|++
T Consensus       291 -~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~  366 (563)
T 1amu_A          291 -RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL  366 (563)
T ss_dssp             -TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCB
T ss_pred             -ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCC
Confidence             35789999999999999998888653   7899999999998654433221  22345789999999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      ++.|+  +|||+| ++..+.+  ++.+++.+...|...+...+++||+|||+|++|++|+|+++||.||+||++|++|+|
T Consensus       367 ~~~g~--~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p  442 (563)
T 1amu_A          367 KSVGE--AGELCIGGEGLARG--YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL  442 (563)
T ss_dssp             CCTTC--EEEEEEEETTCCCE--ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             CCCCC--cEEEEEechhhChh--hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCH
Confidence            99999  599999 6665543  445666666667666666788999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. .||+|.+++|++.+++..+ +.++++|+...  ..+.++++++    ++++|+.|+.|..++++++||+|+
T Consensus       443 ~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l~~~L~~y~~P~~i~~v~~lP~t~  514 (563)
T 1amu_A          443 EEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEK--HIPLEQLRQF----SSEELPTYMIPSYFIQLDKMPLTS  514 (563)
T ss_dssp             HHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESS--CCCHHHHHHH----HHHHSCGGGSCSEEEECSSCCBCT
T ss_pred             HHHHHHHH-hCCCcceEEEEEeecCCCC-eEEEEEEEeCC--CCCHHHHHHH----HHhhCchhhCCcEEEEecccCCCC
Confidence            99999996 8999999999999988777 89999998764  3355555554    667899999999999999999999


Q ss_pred             CcHHHHHHHHHHH
Q 010854          477 SNKLLRRVLRDQI  489 (499)
Q Consensus       477 ~GKv~r~~l~~~~  489 (499)
                      +||++|++|++..
T Consensus       515 ~GKi~r~~L~~~~  527 (563)
T 1amu_A          515 NGKIDRKQLPEPD  527 (563)
T ss_dssp             TSSBCGGGSCCCC
T ss_pred             CcChhHHhcCCcc
Confidence            9999999998754

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.5e-67  Score=543.00  Aligned_cols=439  Identities=19%  Similarity=0.205  Sum_probs=272.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.......             ..
T Consensus       122 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~  188 (570)
T 4gr5_A          122 VAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TG  188 (570)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CS
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cC
Confidence            68999999999999999999999999999999999999999999999999999999987532110             01


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...+......                ...     ...........++|+++++|||||||.||||+++|+++.+.+.. .
T Consensus       189 ~~~~~~~~~~----------------~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~  246 (570)
T 4gr5_A          189 TTTLYVEDEA----------------ASD-----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-Q  246 (570)
T ss_dssp             SEEEECCC----------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-C
T ss_pred             Ccceeeeccc----------------ccc-----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-h
Confidence            1111110000                000     01112223456899999999999999999999999999877665 3


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..+++.++|+++..+|++|..+...++.+++.|+++++.+. ..++..+++.|+++++|++.++|+++..|++...   .
T Consensus       247 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~  323 (570)
T 4gr5_A          247 DYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---E  323 (570)
T ss_dssp             CSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---G
T ss_pred             hhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---h
Confidence            55688999999999999998887778999999999998864 4578899999999999999999999999987643   3


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCCceEEEECCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      +++++|.+++||++++++..+.+...++++++++.||+||++.........   ......++|+|+++++++|+|+++++
T Consensus       324 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~  403 (570)
T 4gr5_A          324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKP  403 (570)
T ss_dssp             GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCB
T ss_pred             hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCC
Confidence            578999999999999999988888888889999999999988655433221   22344679999999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCC--CCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++.|+  +|||+| ++..+.+  ++.+++.+...|...+.  ..+++||+|||+|++|++|+|+++||.||+||++|++|
T Consensus       404 ~~~G~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v  479 (570)
T 4gr5_A          404 AANGA--LGELYVAGAGLAHG--YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRV  479 (570)
T ss_dssp             CCTTC--EEEEEEEETTCCCE--ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------
T ss_pred             CCCCC--cEEEEEeecccchh--cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEe
Confidence            99999  599999 6665553  44455556556654433  24568999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP  473 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP  473 (499)
                      +|.|||++|. .||+|.+++|++.+++.++ +.++++|+...+. ..+.+++++    +++++|+.|+.|..++++++||
T Consensus       480 ~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP  553 (570)
T 4gr5_A          480 EPGEVEARLV-GHPAVRQAAVLAQDSRLGD-KQLVAYVVAERADAPPDAAELRR----HVAEALPAYMVPVECVPVDELP  553 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHh-cCCCcceEEEEEeeCCCCC-eEEEEEEEecCCCCCcCHHHHHH----HHHhhCccccCCcEEEEcccCC
Confidence            9999999996 8999999999999888777 8899999876532 234444444    4667899999999999999999


Q ss_pred             CCCCcHHHHHHHHHH
Q 010854          474 RTASNKLLRRVLRDQ  488 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~  488 (499)
                      +|++|||+|++|++.
T Consensus       554 ~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          554 RTPNGKLDRRALTGS  568 (570)
T ss_dssp             ---------------
T ss_pred             CCCCcCcchHhhhcc
Confidence            999999999999875

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.2e-67  Score=533.99  Aligned_cols=451  Identities=16%  Similarity=0.143  Sum_probs=269.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....      ............
T Consensus        53 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  126 (509)
T 3ivr_A           53 VHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGG  126 (509)
T ss_dssp             CCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCC
Confidence            68999999999999999999999999999999999999999999999999999999987542      111122222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...++....         ....+.++......    .........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus       127 ~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  193 (509)
T 3ivr_A          127 VKKAYAIGD---------GSGPFAPFKDLASD----TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLV  193 (509)
T ss_dssp             CCEEEESSC---------CCSSCEEGGGTCCC----SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHH
T ss_pred             ceEEEEcCC---------CCcChhhHhhccCC----CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            222222111         11122222221111    11223446789999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD  241 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  241 (499)
                      ..++++++|+++..+|++|.+++...+.+++.|++.++.. .+++..+++.|+++++|++.++|+++..|++..  ...+
T Consensus       194 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~  270 (509)
T 3ivr_A          194 DAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQ  270 (509)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGG
T ss_pred             HhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccc
Confidence            8889999999999999999999988666666666666665 678899999999999999999999999998876  3556


Q ss_pred             ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCC
Q 010854          242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD  321 (499)
Q Consensus       242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g  321 (499)
                      ++++|.++.+|++   +..+.+...++++++++.||+||++...+.....  ....++|+|+++++++|+|+++++++.|
T Consensus       271 l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g  345 (509)
T 3ivr_A          271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPG  345 (509)
T ss_dssp             GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTT
T ss_pred             hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCC
Confidence            7899999999986   7777787788789999999999998765544332  2234589999999999999999999999


Q ss_pred             CCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc--CCeeeeCceeechHH
Q 010854          322 QPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVE  398 (499)
Q Consensus       322 ~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~--~d~i~~~G~~v~~~~  398 (499)
                      +  +|||+| ++..+.+  ++.+++.+...|.       ++||+|||+|++|++|++++.||.  +|+||++|++|+|.+
T Consensus       346 ~--~GEl~v~g~~~~~g--Y~~~~~~t~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~e  414 (509)
T 3ivr_A          346 E--VGEIVLRGPTVFKG--YWNNAAATQHAFR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE  414 (509)
T ss_dssp             C--CEEEEEESTTSCCE--ETTCHHHHHHHTG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred             C--ceEEEEecCCcccc--ccCCHHHhHHHhh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHH
Confidence            9  599999 5555443  3344555554452       579999999999999999999999  999999999999999


Q ss_pred             HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854          399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN  478 (499)
Q Consensus       399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G  478 (499)
                      ||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.++++++    ++++|+.|+.|..++++++||+|++|
T Consensus       415 iE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~G  488 (509)
T 3ivr_A          415 VEGALK-QHPAIADAVVIGVPDPQWS-EAIKAVCVCKPGESIAADALAEF----VASLIARYKKPKHVVFVEALPKDAKG  488 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-hCCCceeEEEEeccccccC-cEEEEEEEeCCCCCCCHHHHHHH----HHhhCcccCCCcEEEEecCCCCCCCC
Confidence            999996 8999999999999998887 88999999887665555555555    55689999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhc
Q 010854          479 KLLRRVLRDQIKHELSVR  496 (499)
Q Consensus       479 Kv~r~~l~~~~~~~~~~~  496 (499)
                      ||+|++|++++++.-.++
T Consensus       489 Kidr~~Lr~~~~~~~~~~  506 (509)
T 3ivr_A          489 AIDRAAVKTAHGQEGHHH  506 (509)
T ss_dssp             ------------------
T ss_pred             CccHHHHHHHHhhccccc
Confidence            999999999998765543

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.4e-66  Score=524.75  Aligned_cols=430  Identities=19%  Similarity=0.194  Sum_probs=333.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      ++.||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....        .....   ..
T Consensus        65 L~~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~---~~  133 (505)
T 3nyq_A           65 IGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--------LPPAL---GA  133 (505)
T ss_dssp             CC---CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC--------CCGGG---TT
T ss_pred             ccCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc--------cchhh---cc
Confidence            45799999999999999999999999999999999999999999999999999999986410        00000   00


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...+... .                     .   ...........++++++++|||||||.||||+++|+++...+....
T Consensus       134 ~~~~~~~-~---------------------~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  188 (505)
T 3nyq_A          134 LERVDVD-V---------------------R---ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALA  188 (505)
T ss_dssp             SEEEECC-T---------------------T---CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHH
T ss_pred             ccccccc-c---------------------c---cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHH
Confidence            0000000 0                     0   0011112335678999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC--
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--  238 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~--  238 (499)
                      ..+++.++|++++.+|++|..++.. ++.+++.|+++++.+ .++++.+++.+ ++++|+++++|+++..+++.....  
T Consensus       189 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~  266 (505)
T 3nyq_A          189 DAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE  266 (505)
T ss_dssp             HHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred             HHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence            8889999999999999999999875 899999999999886 56788888888 889999999999999998753322  


Q ss_pred             -cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854          239 -GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       239 -~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                       ..+++++|.+++||+++++++.+++...+ ++++++.||+||++..+.... ......+++|+|+++++++|+|++|++
T Consensus       267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~  344 (505)
T 3nyq_A          267 LAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTP  344 (505)
T ss_dssp             HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----C
T ss_pred             hhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCC
Confidence             24577899999999999999999988765 789999999999987655433 334556899999999999999999999


Q ss_pred             CCC---CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc-CCeeeeCce
Q 010854          318 YPD---DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGI  392 (499)
Q Consensus       318 ~~~---g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~-~d~i~~~G~  392 (499)
                      ++.   |+  +|||+| ++..+.+  ++.+++.+...|      ..++||+|||+|++|++|+++++||. ||+||++|+
T Consensus       345 ~~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~  414 (505)
T 3nyq_A          345 IAALDGES--VGEIQVRGPNLFTE--YLNRPDATAAAF------TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGY  414 (505)
T ss_dssp             CCCCCSCC--CEEEEEESTTSCCE--ETTCHHHHHHTB------CTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTE
T ss_pred             cccCCCCc--eEEEEEecCchhhh--hCCChhHhhhhh------cCCCCCccCCeEEECCCccEEEeCCccCceEEeCCE
Confidence            876   66  599999 5555443  333444444444      24679999999999999999999998 589999999


Q ss_pred             eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC-CCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCC
Q 010854          393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE  471 (499)
Q Consensus       393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~  471 (499)
                      +|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.+. ...+.++++++    ++++|+.|+.|..++++++
T Consensus       415 ~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~l~a~vv~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~  488 (505)
T 3nyq_A          415 KIGAGEIENALL-EHPEVREAAVTGEPDPDLG-ERIVAWIVPADPAAPPALGTLADH----VAARLAPHKRPRVVRYLDA  488 (505)
T ss_dssp             EECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSTTSCCCHHHHHHH----HHHHTCGGGSCSEEEECSC
T ss_pred             EECHHHHHHHHH-HCcCccEEEEEeeECCCCC-cEEEEEEEECCCCCCCCHHHHHHH----HHhhCCCCcCccEEEEECC
Confidence            999999999996 9999999999999998888 999999998763 33444555544    6678999999999999999


Q ss_pred             CCCCCCcHHHHHHHHH
Q 010854          472 FPRTASNKLLRRVLRD  487 (499)
Q Consensus       472 iP~t~~GKv~r~~l~~  487 (499)
                      ||+|++||++|++|++
T Consensus       489 lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          489 VPRNDMGKIMKRALNR  504 (505)
T ss_dssp             CCC-------------
T ss_pred             CCCCCCcCeeHHhhcc
Confidence            9999999999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.3e-65  Score=530.19  Aligned_cols=459  Identities=18%  Similarity=0.196  Sum_probs=369.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++...... ...............
T Consensus        72 v~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~-~~~~~~~~~~~~~~~  150 (617)
T 3rg2_A           72 IKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF-SGDDFLNTFVTEHSS  150 (617)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHHSTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEeccccccc-ccHHHHHHHhhcCCc
Confidence            6899999999999999999999999999999999999999999999999999999998753200 000111122222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...+.....        .....+.+.......     ........++++|+++|||||||.||||+++|+++.+.+....
T Consensus       151 ~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~  217 (617)
T 3rg2_A          151 IRVVQLLND--------SGEHNLQDAINHPAE-----DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV  217 (617)
T ss_dssp             CCEEEEETC--------CSTTBHHHHHHSCCS-----SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHH
T ss_pred             cceeeeccc--------ccccchhhhhccccc-----ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHH
Confidence            222221111        112234444433221     1222345679999999999999999999999999999998888


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC-
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-  238 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~-  238 (499)
                      ..+++.++|++++.+|++|.+++..  ++.+++.|+++++.+ ..++..+++.++++++|++.++|+++..|++..... 
T Consensus       218 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  296 (617)
T 3rg2_A          218 EICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE  296 (617)
T ss_dssp             HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc
Confidence            8889999999999999999988764  899999999999987 457889999999999999999999999988754322 


Q ss_pred             -cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCC
Q 010854          239 -GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGV  316 (499)
Q Consensus       239 -~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~  316 (499)
                       ..+++++|.+++|||++++++.+.+...+ ++++++.||+||++..+............++|.|+ ++.+++|+|++++
T Consensus       297 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~  375 (617)
T 3rg2_A          297 SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGN  375 (617)
T ss_dssp             CTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSC
T ss_pred             ccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCC
Confidence             33688999999999999999999988776 78999999999998755443332223446889997 7889999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  +|||+| ++....+  ++.+++.+...|      ..++||+|||+|++++||+|+++||.||+||++|++|+
T Consensus       376 ~~p~G~--~GEl~i~G~~v~~G--Y~~~p~~t~~~f------~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~  445 (617)
T 3rg2_A          376 PLPQGE--VGRLMTRGPYTFRG--YYKSPQHNASAF------DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIA  445 (617)
T ss_dssp             BCCTTC--CEEEEEECSSSCSC--CTTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEE
T ss_pred             CCCCCC--ceEEEecCccccch--hcCChhhhhhcc------CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeC
Confidence            999999  599999 5555443  344555555555      24579999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEEcCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPR  474 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~~~~iP~  474 (499)
                      |.|||++|. .||+|.+++|++.+++..+ +.++++++..+  ..+.+++.++    +.+ .|+.|+.|..++++++||+
T Consensus       446 ~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l~~~~lp~~~vP~~~~~v~~lP~  517 (617)
T 3rg2_A          446 AEEIENLLL-RHPAVIYAALVSMEDELMG-EKSCAYLVVKE--PLRAVQVRRF----LREQGIAEFKLPDRVECVDSLPL  517 (617)
T ss_dssp             HHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHTTTCCGGGSCSEEEECSCCCB
T ss_pred             HHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEEEEEEeCC--CCCHHHHHHH----HHhCCCccccCCcEEEEecccCC
Confidence            999999996 8999999999999888777 88999999876  3455555555    445 6999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhhh
Q 010854          475 TASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       475 t~~GKv~r~~l~~~~~~~~~  494 (499)
                      |++||++|++|++++.+...
T Consensus       518 t~~GKidR~~L~~~~~~~~~  537 (617)
T 3rg2_A          518 TAVGKVDKKQLRQWLASRAS  537 (617)
T ss_dssp             CTTSSBCHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHhcccc
Confidence            99999999999998876543

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2e-66  Score=566.37  Aligned_cols=466  Identities=20%  Similarity=0.227  Sum_probs=288.8

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++++++.+++++++++++|+++...      ..+.........
T Consensus       110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  183 (979)
T 3tsy_A          110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYV------DKIKPLQNDDGV  183 (979)
T ss_dssp             CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTT------TTSHHHHHTSCC
T ss_pred             CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHH------HHHHHHhhcCCc
Confidence            68999999999999999999999999999999999999999999999999999999988543      222333222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+.+. ..  .......+...+.++......  ...........++|+++++|||||||.||||+++|+++...+....
T Consensus       184 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  258 (979)
T 3tsy_A          184 VIVCID-DN--ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  258 (979)
T ss_dssp             EEEECC-CC--TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred             eEEEeC-Cc--ccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence            222221 11  111122334455555433221  1112223346789999999999999999999999999988776543


Q ss_pred             e----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          162 A----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       162 ~----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      .    .+++.++|++++.+|++|.+++.. ++.++..|+++++.+ .++++.+++.|+++++|++.++|+++..|++...
T Consensus       259 ~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  337 (979)
T 3tsy_A          259 DGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE  337 (979)
T ss_dssp             CSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred             HhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence            3    456889999999999999999865 888999999999987 5678999999999999999999999999999887


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC----CCCCCccccccccCCCceEEEEC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD  312 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~i~d  312 (499)
                      ....+++++|.+++||+++++++.+++...++++++++.||+||++.......    .......+++|.|+++++++|+|
T Consensus       338 ~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d  417 (979)
T 3tsy_A          338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD  417 (979)
T ss_dssp             GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC
T ss_pred             ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe
Confidence            77788999999999999999999999998888899999999999987654432    12234567899999999999999


Q ss_pred             -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854          313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG  390 (499)
Q Consensus       313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~  390 (499)
                       ++|++++.|+  .|||+| ++..+.+  ++.+++.+...|      ..++||+|||+|++|++|+|+++||.||+||++
T Consensus       418 ~~~~~~~~~g~--~GEl~i~g~~v~~G--Y~~~p~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  487 (979)
T 3tsy_A          418 PDTGDSLSRNQ--PGEICIRGHQIMKG--YLNNPAATAETI------DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYK  487 (979)
T ss_dssp             TTSCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEESCC-----
T ss_pred             CCCCCCCCCCC--ccEEEEECCCcccc--ccCChhhhhhhc------cCCCcEEcCCEEEEcCCceEEEecCCCCEEEEC
Confidence             7799999999  499999 6655543  334444444444      356799999999999999999999999999999


Q ss_pred             ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854          391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP  470 (499)
Q Consensus       391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~  470 (499)
                      |++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|+..++...+.++++++    ++++|+.|+.|..+++++
T Consensus       488 G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~  561 (979)
T 3tsy_A          488 GFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQF----VSKQVVFYKRINKVFFTE  561 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCCCCCCHHHHHHH----HHHhcccccCCeEEEEeC
Confidence            99999999999996 8999999999999988887 89999999877655555555554    567899999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854          471 EFPRTASNKLLRRVLRDQIKHELSV  495 (499)
Q Consensus       471 ~iP~t~~GKv~r~~l~~~~~~~~~~  495 (499)
                      +||+|++||++|++|++++.+.+++
T Consensus       562 ~lP~t~~GKi~r~~L~~~~~~~~~~  586 (979)
T 3tsy_A          562 SIPKAPSGKILRKDLRAKLANGLGS  586 (979)
T ss_dssp             -------------------------
T ss_pred             CcCcCCCCCeeHHHHHHHHHhhcCC
Confidence            9999999999999999998875543

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.5e-65  Score=530.49  Aligned_cols=433  Identities=19%  Similarity=0.164  Sum_probs=343.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.....      ...       .
T Consensus        74 v~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~------~~~-------~  140 (620)
T 4dg8_A           74 PQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT------PAN-------G  140 (620)
T ss_dssp             CSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC------CCT-------T
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc------ccc-------C
Confidence            689999999999999999999999999999999999999999999999999999997653210      000       0


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....                 .+...   ..   ...........++++|+++|||||||.||||+++|+++.+.+.. .
T Consensus       141 ~~~~-----------------~~~~~---~~---~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~  196 (620)
T 4dg8_A          141 LPCV-----------------PVRHL---PA---APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-Q  196 (620)
T ss_dssp             SCEE-----------------EGGGC---CC---CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-C
T ss_pred             Ccee-----------------eeccC---Cc---CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-H
Confidence            0000                 00000   00   01111222346799999999999999999999999999887766 4


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL  240 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~  240 (499)
                      ..+++.++++++...|++|..++..++.+++.|+++++.+ ...++..+++.|+++++|++.++|+++..|++..   ..
T Consensus       197 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~  273 (620)
T 4dg8_A          197 SFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PD  273 (620)
T ss_dssp             GGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GG
T ss_pred             HhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hh
Confidence            5678899999999999999999988999999999999874 3457889999999999999999999999998753   34


Q ss_pred             cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC---CCCCccccccccCCCceEEEECCCCCC
Q 010854          241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      +++++|.+++|||+++++..+.+...++++++++.||+||++...+....   .......++|+|+++++++|+|+++++
T Consensus       274 ~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~  353 (620)
T 4dg8_A          274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQE  353 (620)
T ss_dssp             GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCB
T ss_pred             hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCC
Confidence            57899999999999998888888778778999999999999865443222   123345789999999999999998888


Q ss_pred             -CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCc--cccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854          318 -YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK  393 (499)
Q Consensus       318 -~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~  393 (499)
                       ++.|+  +|||+| ++..+.+  ++.+++.+...|...+. .+.  +||+|||+|++++||+|+++||.||+||++|++
T Consensus       354 ~~~~g~--~GEl~i~G~~v~~G--Y~~~p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~r  428 (620)
T 4dg8_A          354 IAEPDR--AGEIVAFGAGLAQG--YRNDAARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR  428 (620)
T ss_dssp             CCSSSC--CEEEEEEETTCCSE--ETTCHHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEE
T ss_pred             CCCCCC--ceEEEEeccccccc--cCCChhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEE
Confidence             78888  599999 6655543  34455666666654332 233  799999999999999999999999999999999


Q ss_pred             echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854          394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP  473 (499)
Q Consensus       394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP  473 (499)
                      |+|.|||++|. .||+|.+++|++.++...  ..++++++...      +.+.+    ++.++|+.|+.|..++++++||
T Consensus       429 i~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~--~~lv~~~~~~~------~~~~~----~l~~~Lp~y~~P~~~~~v~~lP  495 (620)
T 4dg8_A          429 LDLPALEQRFR-RQPGILDCALLVRERNGV--KQLLCAWTGKA------DASPQ----ALLRQLPTWQRPHACVRVEALP  495 (620)
T ss_dssp             EEHHHHHHHHH-TSTTEEEEEEEEEEETTE--EEEEEEEEECT------TCCCH----HHHHHSCGGGSCSEEEECSSCC
T ss_pred             cCHHHHHHHHH-hCCCccEEEEEEEeCCCc--eEEEEEEecCh------HHHHH----HHHHhChhhcCCcEEEEECcCC
Confidence            99999999997 899999999999887644  34444444321      11222    3456899999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhh
Q 010854          474 RTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~  492 (499)
                      +|++||++|++|++.+.+.
T Consensus       496 ~t~~GKidR~~L~~~~~~~  514 (620)
T 4dg8_A          496 LTAHGKLDRAALLRRLEEP  514 (620)
T ss_dssp             CC----CCHHHHHHHTCSC
T ss_pred             CCcccCHhHHHHhhccccc
Confidence            9999999999999877554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7.5e-65  Score=515.77  Aligned_cols=450  Identities=16%  Similarity=0.177  Sum_probs=330.2

Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCce
Q 010854            4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA   83 (499)
Q Consensus         4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (499)
                      +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++........      ..........
T Consensus        47 ~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~------~~~~~~~~~~  120 (501)
T 3ipl_A           47 QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF------QIVSLDDIEF  120 (501)
T ss_dssp             CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTS------EEEETTC---
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccc------ccccccccee
Confidence            7999999999999999999999999999999999999999999999999999999875432110      0000000000


Q ss_pred             EEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhccee
Q 010854           84 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH  163 (499)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~  163 (499)
                      .........  .........+.....................+++++++++|||||||.||+|+++|+++...+......
T Consensus       121 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~  198 (501)
T 3ipl_A          121 AGRDITTNG--LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES  198 (501)
T ss_dssp             -------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH
T ss_pred             eeeeccccc--ccccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh
Confidence            000000000  000000000000000000000000111234568999999999999999999999999999998888888


Q ss_pred             ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccccc
Q 010854          164 IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT  243 (499)
Q Consensus       164 ~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~  243 (499)
                      +++.++|++++.+|++|.+++..++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++.......   
T Consensus       199 ~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  274 (501)
T 3ipl_A          199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---  274 (501)
T ss_dssp             TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---
T ss_pred             hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---
Confidence            89999999999999999999988999999999999987 46889999999999999999999999999887654432   


Q ss_pred             ceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCCCCC
Q 010854          244 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQ  322 (499)
Q Consensus       244 ~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~  322 (499)
                      ++|.+++||+++++++.+.+.. + ++++++.||+||+++.+...... ......++|.|+++++++|+|++     .++
T Consensus       275 ~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~  347 (501)
T 3ipl_A          275 NLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG  347 (501)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC
T ss_pred             cccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC
Confidence            8999999999999999888875 3 78999999999998655443322 22356789999999999999965     334


Q ss_pred             CcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHH
Q 010854          323 PCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER  401 (499)
Q Consensus       323 ~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~  401 (499)
                        .|||+| ++..+.++  +.+++.+.. +       .++||+|||+|++|++|++++.||.||+||++|++|+|.+||+
T Consensus       348 --~GEl~v~g~~~~~gY--~~~~~~t~~-~-------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~  415 (501)
T 3ipl_A          348 --HGELMIKGANVMNGY--LYPTDLTGT-F-------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIET  415 (501)
T ss_dssp             --CEEEEEESTTSCSCC--SBSTTCCCS-E-------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHH
T ss_pred             --ccEEEEeccchhhhh--CcChhhcch-h-------cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHH
Confidence              499999 65555432  222222221 1       3579999999999999999999999999999999999999999


Q ss_pred             HHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHH
Q 010854          402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL  481 (499)
Q Consensus       402 ~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~  481 (499)
                      +|. .||+|.+++|++.+++..+ +.++++++...  ..+.++++++    ++++|+.|+.|..++++++||+|++||++
T Consensus       416 ~l~-~~p~V~~~~vv~~~~~~~g-~~~~a~v~~~~--~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~GKi~  487 (501)
T 3ipl_A          416 VAK-QFPGISDAVCVGHPDDTWG-QVPKLYFVSES--DISKAQLIAY----LSKHLAKYKVPKHFEKVDTLPYTSTGKLQ  487 (501)
T ss_dssp             HHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHHHSCGGGSCSEEEECSSCC--------
T ss_pred             HHH-hCCCccEEEEEEEecccCC-ceEEEEEEeCC--CCCHHHHHHH----HHhhCccccCCCEEEEecccCCCCCCCEe
Confidence            996 9999999999999988888 88999988743  3455555555    55689999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 010854          482 RRVLRDQIKHE  492 (499)
Q Consensus       482 r~~l~~~~~~~  492 (499)
                      |++|++...++
T Consensus       488 R~~l~~~~~~~  498 (501)
T 3ipl_A          488 RNKLYREGHHH  498 (501)
T ss_dssp             -----------
T ss_pred             HHHHhhccccc
Confidence            99999887664

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.7e-63  Score=516.39  Aligned_cols=458  Identities=14%  Similarity=0.088  Sum_probs=352.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCC---CHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF---AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   78 (499)
                      +++||+|+++++|++++++++|||+++|++++|+++..   +.+++.++++.+++++++++...........  ......
T Consensus        62 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~  139 (590)
T 3kxw_A           62 AKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADE--LNTNPK  139 (590)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-------CCE
T ss_pred             CCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhh--hhhccc
Confidence            68999999999999999999999999999999999988   4578999999999999999875431111000  000000


Q ss_pred             CCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           79 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      ... ..++                ..+++.....     .........++++++++|||||||.||||+++|+++...+.
T Consensus       140 ~~~-~~~~----------------~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~  197 (590)
T 3kxw_A          140 FLK-IPAI----------------ALESIELNRS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN  197 (590)
T ss_dssp             ETT-EEEE----------------EGGGCCGGGG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHH
T ss_pred             ccc-ccee----------------echhcccccc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHH
Confidence            000 0000                0111100000     11122345689999999999999999999999999999999


Q ss_pred             hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC---ChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      +....+++.++|++++++|++|.+++.. ++.+++.|+++++.+...   ++..+++.|+++++|++.++|+++..+++.
T Consensus       198 ~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  277 (590)
T 3kxw_A          198 KIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR  277 (590)
T ss_dssp             HHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHH
T ss_pred             HHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHH
Confidence            8888899999999999999999999987 899999999999986432   578899999999999999999999988775


Q ss_pred             C---CCCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCC---------------
Q 010854          235 N---CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLL---------------  291 (499)
Q Consensus       235 ~---~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~---------------  291 (499)
                      .   .....+++++|.+++||+++++++.+.+...+.     +..+++.||+||++..++.....               
T Consensus       278 ~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (590)
T 3kxw_A          278 IREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQD  357 (590)
T ss_dssp             CCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSS
T ss_pred             hhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhc
Confidence            3   334567899999999999999999999887763     35799999999998766543221               


Q ss_pred             -----------CCCccccccccCCCceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCC
Q 010854          292 -----------QPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK  358 (499)
Q Consensus       292 -----------~~~~~~~~g~~~~~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (499)
                                 ......++|.|+++  ++|+|++ +++++.|+  +|||+| ++..+.+  ++.+++.+...|...+...
T Consensus       358 ~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~  431 (590)
T 3kxw_A          358 HRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ--VGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDD  431 (590)
T ss_dssp             SBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB--CEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC
T ss_pred             CceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC--EEEEEEeCCccccc--ccCChhHHHHHHhccccCC
Confidence                       11234688999998  8889955 99999998  599999 6665553  4556666666675443333


Q ss_pred             --CccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccce--eeeEEEeCCCCCCceEEEEEEEe
Q 010854          359 --GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVL  434 (499)
Q Consensus       359 --~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~~v~~~~~~~~~~~~~~~~v~~  434 (499)
                        +.+||+|||+|++| +|+|+++||.||+||++|++|+|.|||++|.+.+|+|.  +++|++++++. + +.++++++.
T Consensus       432 ~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~  508 (590)
T 3kxw_A          432 ERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEV  508 (590)
T ss_dssp             ---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEE
T ss_pred             CCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEe
Confidence              34499999999999 99999999999999999999999999999944899998  79999988765 4 788888888


Q ss_pred             cCCC--CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854          435 KKGF--TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       435 ~~~~--~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~  492 (499)
                      .++.  ..+.+++.+++++.+...+.....+..++.+++||+|++|||+|++|++++.+.
T Consensus       509 ~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~  568 (590)
T 3kxw_A          509 KNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK  568 (590)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred             ccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence            7654  234556777776666443222122334444589999999999999999998764

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=5.4e-63  Score=552.30  Aligned_cols=443  Identities=18%  Similarity=0.182  Sum_probs=363.0

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++..........+        ...
T Consensus       511 v~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~  582 (1304)
T 2vsq_A          511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTG  582 (1304)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCS
T ss_pred             cCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCC
Confidence            689999999999999999999999999999999999999999999999999999999875421110000        001


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ..+++..               ...... .      .........++++|+++|||||||.||||+++|+++.+. .+..
T Consensus       583 ~~~~~~~---------------~~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~  639 (1304)
T 2vsq_A          583 TTLFIDD---------------QTRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHV  639 (1304)
T ss_dssp             EEEESSC---------------GGGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSC
T ss_pred             cEEEecc---------------cccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHH
Confidence            1111110               000000 0      011122356799999999999999999999999999876 4555


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++.++|+++...|++|..+...++.+++.|+++++.+..  .++..+.+.|+++++|++.++|++++.+.+..   .
T Consensus       640 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~  716 (1304)
T 2vsq_A          640 DYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---E  716 (1304)
T ss_dssp             CSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---S
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---h
Confidence            667889999999999999999988899999999999998753  46789999999999999999999999998653   2


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCCceEEEECCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      ..++++|.+++|||+++++..+.+...+++.++++.||+||++..++.....   ......++|+|+++++++|+|++++
T Consensus       717 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~  796 (1304)
T 2vsq_A          717 DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQ  796 (1304)
T ss_dssp             HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSC
T ss_pred             hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcC
Confidence            3467899999999999999988888777678899999999998655433221   2234568999999999999999999


Q ss_pred             CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854          317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS  395 (499)
Q Consensus       317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~  395 (499)
                      +++.|+  +|||+| +++...+  ++.+++.+...|...|...+++||+|||+|++++||+|+++||.||+||++|++|+
T Consensus       797 ~~p~G~--~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie  872 (1304)
T 2vsq_A          797 LQPFGA--VGELCISGMGVSKG--YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIE  872 (1304)
T ss_dssp             BCCTTC--CEEEEEEETTCCCC--BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEE
T ss_pred             CCCCCC--ceEEEEeccccCcc--ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeC
Confidence            999999  599999 6665543  44566667777776777778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854          396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT  475 (499)
Q Consensus       396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t  475 (499)
                      |.|||++|. .+|+|.+++|++.++...+ +.++++++...  ..+.++++++    ++++|+.|++|..++++++||+|
T Consensus       873 ~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~~----l~~~Lp~ymvP~~~~~l~~lP~t  944 (1304)
T 2vsq_A          873 LEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKAH----LKKQLPAYMVPQTFTFLDELPLT  944 (1304)
T ss_dssp             HHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHHH----HHHHSCGGGSCSEEEEESCCCCC
T ss_pred             HHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHHH----HHHhChHhhhccEEEEecccCCC
Confidence            999999996 8999999999999887777 89999999765  3455555544    66789999999999999999999


Q ss_pred             CCcHHHHHHHHHHHH
Q 010854          476 ASNKLLRRVLRDQIK  490 (499)
Q Consensus       476 ~~GKv~r~~l~~~~~  490 (499)
                      ++|||+|++|++...
T Consensus       945 ~~GKidR~~L~~~~~  959 (1304)
T 2vsq_A          945 TNGKVNKRLLPKPDQ  959 (1304)
T ss_dssp             SSCSSCCSCCCCCCG
T ss_pred             CCcccCHhhcCCcch
Confidence            999999999876443

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.2e-63  Score=513.99  Aligned_cols=447  Identities=18%  Similarity=0.199  Sum_probs=259.3

Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCce
Q 010854            4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA   83 (499)
Q Consensus         4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (499)
                      +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.......           .....
T Consensus        78 ~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~  146 (562)
T 3ite_A           78 HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPET  146 (562)
T ss_dssp             SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTC
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccc
Confidence            6999999999999999999999999999999999999999999999999999999864321100           00111


Q ss_pred             EEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce-
Q 010854           84 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-  162 (499)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~-  162 (499)
                      .++..           ....+.+.......     ........++++++++|||||||.||||+++|+++.+.+..... 
T Consensus       147 ~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  210 (562)
T 3ite_A          147 KVLDT-----------KNQSFIENLSTQDT-----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKL  210 (562)
T ss_dssp             EEEET-----------TCHHHHHHHHHSCC-----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH
T ss_pred             eeecc-----------cchhhhhhcccccc-----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhh
Confidence            11110           11122222222211     11122345788999999999999999999999999877655433 


Q ss_pred             -------eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccC
Q 010854          163 -------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN  235 (499)
Q Consensus       163 -------~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~  235 (499)
                             .+.+...+++++..|++|..++..++.++..|+++++.+.....+.+.+.++++++|++.++|++++.+... 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-  289 (562)
T 3ite_A          211 IGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-  289 (562)
T ss_dssp             HHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-
T ss_pred             hccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-
Confidence                   245778899999999999988888889999999999876443457788999999999999999999887443 


Q ss_pred             CCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CC
Q 010854          236 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC  314 (499)
Q Consensus       236 ~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~  314 (499)
                         ..+++++|.+++||+++++++.+.+... .++.+++.||+||++..+............++|.|+++++++|+| +.
T Consensus       290 ---~~~~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~  365 (562)
T 3ite_A          290 ---PEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGS  365 (562)
T ss_dssp             ---GGGSTTCCEEEEESSCCCHHHHHHHTTC-SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTS
T ss_pred             ---ccccCceEEEEEecCCCCHHHHHHHhhC-CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCC
Confidence               4567899999999999999999988764 478999999999998765554444455667899999999999999 67


Q ss_pred             CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854          315 GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK  393 (499)
Q Consensus       315 g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~  393 (499)
                      +++++.|+  +|||+| ++..+.+  ++.+++.+...+     .++++||+|||+|++|++|+|+++||.||+||++|++
T Consensus       366 ~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~  436 (562)
T 3ite_A          366 NEHVKKGM--AGELVIEGSLVANG--YLNRPDAKGFCD-----INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQR  436 (562)
T ss_dssp             SCBCCTTS--CEEEEEESTTSCCE--ESSCTTCCSEEE-----ETTEEEEEEEEEEEECTTSCEEEEEEC----------
T ss_pred             CCCCCCCC--ceEEEEeccccchh--hCCCcccccccc-----CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEE
Confidence            88999999  599999 6555443  222333222111     2456799999999999999999999999999999999


Q ss_pred             echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC---------HHHHHHHHHHHHHhhcCCceeee
Q 010854          394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---------PDKLKMIFSKAIQSKLNPLFKVS  464 (499)
Q Consensus       394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~l~~~~~~~~~~~l~~~~~p~  464 (499)
                      |+|.|||++|.+.++.+.+++|++.+++..+ +..++.++...+....         ...+.+.++++++++|+.|++|+
T Consensus       437 v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~  515 (562)
T 3ite_A          437 LELGEVSEVIRSLSPTDIDVVTLLLNHPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPD  515 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECHHHHHHHHHhcCCCceeEEEEEecCCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCc
Confidence            9999999999733488889998888887777 5444444443322211         12234467777888999999999


Q ss_pred             EEEEcCCCCCC-CCcHHHHHHHHHHHHhh
Q 010854          465 LVKVVPEFPRT-ASNKLLRRVLRDQIKHE  492 (499)
Q Consensus       465 ~~~~~~~iP~t-~~GKv~r~~l~~~~~~~  492 (499)
                      .|+++++||+| ++||++|++|++++++.
T Consensus       516 ~i~~v~~lP~t~~~GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          516 FIIPISFIPLRDTSAKTDAKALEHMFHTL  544 (562)
T ss_dssp             -----------------------------
T ss_pred             EEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence            99999999998 89999999999998754

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.9e-53  Score=411.04  Aligned_cols=318  Identities=17%  Similarity=0.131  Sum_probs=265.4

Q ss_pred             CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCCh
Q 010854          127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE  206 (499)
Q Consensus       127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  206 (499)
                      .|++|+|+|||||||.||||+++|+++.+.+......++++++|++++++|++|.+|+..++.+++.|+++++.++..  
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~--  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA--  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS--
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc--
Confidence            378999999999999999999999999999988888899999999999999999999988999999999999987543  


Q ss_pred             hHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeee
Q 010854          207 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI  286 (499)
Q Consensus       207 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  286 (499)
                       ..++.|+++++|++.++|+++..|++.... ..+++++|.+++||+++++++.+++...  +.++++.||+||++....
T Consensus       114 -~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~  189 (358)
T 4gs5_A          114 -NPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA  189 (358)
T ss_dssp             -CTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred             -cHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence             345678899999999999999999887653 4468999999999999999999988753  789999999999987655


Q ss_pred             cCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccC
Q 010854          287 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG  366 (499)
Q Consensus       287 ~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  366 (499)
                      .... .....+.+|.+.|++++.+.+            .||+++...+                       ..++||+||
T Consensus       190 ~~~~-~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~-----------------------~~~g~~~TG  233 (358)
T 4gs5_A          190 LKAL-NGPEASELYVFLPGIQYGVDE------------RGCLHISGAV-----------------------TNGQTVQTN  233 (358)
T ss_dssp             EEEC-SSTTCCSCEEECTTCEEEECT------------TSEEEEESGG-----------------------GTTCCEEEE
T ss_pred             cccc-cccccceeeccCCCeEEEecC------------cCceEEeccc-----------------------ccCcceecC
Confidence            4433 233457889999999888744            2898873211                       234689999


Q ss_pred             ceeEeecCceEEEecccCCeeeeCceeechHHHHHHHh--hcCccceeeeEE-EeCCCCCCceEEEEEEEecCCCCCCHH
Q 010854          367 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD  443 (499)
Q Consensus       367 D~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~--~~~~~v~~~~v~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  443 (499)
                      |+|++|++| ++++||.||+||++|++|+|.|||++|.  ..||+|.+++|+ ..+++..+ +.++++|+...+     +
T Consensus       234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-----~  306 (358)
T 4gs5_A          234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-----E  306 (358)
T ss_dssp             EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-----H
T ss_pred             CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-----C
Confidence            999999998 5567999999999999999999998773  157999998886 56677777 888888875432     3


Q ss_pred             HHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          444 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       444 ~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      ...+.++++++++|+.|++|++|+++++||+|++|||+|++|++++++..
T Consensus       307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred             cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence            34455667778899999999999999999999999999999999887654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4.6e-48  Score=385.31  Aligned_cols=326  Identities=19%  Similarity=0.222  Sum_probs=257.9

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEE
Q 010854          124 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLA  198 (499)
Q Consensus       124 ~~~~-~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  198 (499)
                      ...+ +++++++|||||||.||+|+++|+++...+....   ..+++.++|+++...|++|..+.+ .++.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3455 8999999999999999999999999877655543   345789999999999987666655 4888899999999


Q ss_pred             ecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceeccc
Q 010854          199 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC  276 (499)
Q Consensus       199 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~y  276 (499)
                      +.+ ..+++.+++.|+++++|++.++|+++..|++.....+.+  ++++|.+++|||++++++.+.+...+ ++++++.|
T Consensus       161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y  238 (436)
T 3qov_A          161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF  238 (436)
T ss_dssp             CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred             eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence            886 457899999999999999999999999998875444443  78999999999999999999998877 89999999


Q ss_pred             cccceeee-eecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCC
Q 010854          277 GGTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM  354 (499)
Q Consensus       277 g~tE~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~  354 (499)
                      |+||+++. ......    .....+.+.+++.++|+| ++|++++.|+  .|||+|+.....             .+   
T Consensus       239 G~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~--~Gel~v~~~~~~-------------~~---  296 (436)
T 3qov_A          239 GMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGE--IGELVLTTLDRE-------------MM---  296 (436)
T ss_dssp             EEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTC--CEEEEEEESSCC-------------SS---
T ss_pred             cchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCC--ceEEEEeccCcC-------------Cc---
Confidence            99999433 222211    112356778899999999 8999999999  599999431110             11   


Q ss_pred             CCCCCccccccCceeEeecCc------e---EEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCc
Q 010854          355 PMYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP  425 (499)
Q Consensus       355 ~~~~~~~~~~TGD~~~~~~~G------~---l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~  425 (499)
                          ..+||+|||+|+++++|      +   +++.||.||+||++|++|+|.+||++|. .||+|.+++|++..++..+ 
T Consensus       297 ----~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-  370 (436)
T 3qov_A          297 ----PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-  370 (436)
T ss_dssp             ----CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-
T ss_pred             ----eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-
Confidence                24689999999999998      5   6999999999999999999999999996 8999999999999887766 


Q ss_pred             eEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCceeeeEEEEcC--CCCCCCCcHHHHHH
Q 010854          426 EVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRV  484 (499)
Q Consensus       426 ~~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~~p~~~~~~~--~iP~t~~GKv~r~~  484 (499)
                      +.++++|++. +...+    .+++.+++++.+.+.+   +.|..+.+++  +||+|+ ||++|..
T Consensus       371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~---~~p~~i~~v~~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEI---LVTPKVKLVKKGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHH---SSCCEEEEECTTCCC--------CEE
T ss_pred             cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhc---CCceEEEEeCCCcccCcC-CcceEEE
Confidence            8999999998 55444    4456666555544332   5677888888  999999 9998853

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.8e-47  Score=386.42  Aligned_cols=345  Identities=16%  Similarity=0.128  Sum_probs=260.6

Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCC---CCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC
Q 010854            4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP   80 (499)
Q Consensus         4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~   80 (499)
                      +||+|+++++|++++++++|||+++|++++|+++   .++.+++.+++++++++++|++.....      .+........
T Consensus        81 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~  154 (480)
T 3t5a_A           81 TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD------DVVQHVARRP  154 (480)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH------HHHHTCC---
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHH------HHHHHHhccc
Confidence            8999999999999999999999999999999999   778999999999999999999875321      1111111110


Q ss_pred             C--ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854           81 L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA  158 (499)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~  158 (499)
                      .  ...++..                +.+...     ...........++++++++|||||||.||||+++|+++...+.
T Consensus       155 ~~~~~~~~~~----------------~~~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~  213 (480)
T 3t5a_A          155 GESPPSIIEV----------------DLLDLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFE  213 (480)
T ss_dssp             ---CCEEEEG----------------GGSCTT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHH
T ss_pred             cccccceeEe----------------cccccc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHH
Confidence            0  0011110                000000     1111223345678999999999999999999999999999888


Q ss_pred             hcceeccCcC------CcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHH
Q 010854          159 EGWAHIDLKV------GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLV  228 (499)
Q Consensus       159 ~~~~~~~~~~------~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l  228 (499)
                      +....+.+..      +|+++.++|++|.+++.. ++.+++.|+++++.+..   .++..+++.++++++| +.++|+++
T Consensus       214 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~  292 (480)
T 3t5a_A          214 QLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFA  292 (480)
T ss_dssp             HHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHH
T ss_pred             HHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHH
Confidence            8777777777      999999999999999765 89999999999998643   3678999999999999 88999988


Q ss_pred             HHHHcc----CCCCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCC-------
Q 010854          229 KAWRNT----NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ-------  292 (499)
Q Consensus       229 ~~l~~~----~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~-------  292 (499)
                      ..++..    ......++++||.+++||+++++++.+.+.+.+.     ++.+++.||+||++..+.......       
T Consensus       293 ~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  372 (480)
T 3t5a_A          293 FELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDF  372 (480)
T ss_dssp             HHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEE
T ss_pred             HHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEe
Confidence            887763    2334567899999999999999999999988873     457999999999988766544321       


Q ss_pred             -----------------CCccccccccCCCceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcC
Q 010854          293 -----------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG  353 (499)
Q Consensus       293 -----------------~~~~~~~g~~~~~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~  353 (499)
                                       .....++|+|++ ++++|+|++ |++++.|+  +|||+| ++..+.+  ++.+++.+...|..
T Consensus       373 ~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~  447 (480)
T 3t5a_A          373 DTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT--VGEIWVHGDNVANG--YWQKPDESERTFGG  447 (480)
T ss_dssp             CHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB--CEEEEEESTTSCCC--BTTBHHHHHHHHCB
T ss_pred             cHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC--EEEEEEeCCccccc--cccCcchhHHHHhh
Confidence                             124468999999 999999955 89999999  599999 6665553  45566666666642


Q ss_pred             CC-----CCCCccccccCceeEeecCceEEEecc
Q 010854          354 MP-----MYKGMCLRRHGDIIKRTVGGYIIVQGR  382 (499)
Q Consensus       354 ~~-----~~~~~~~~~TGD~~~~~~~G~l~~~gR  382 (499)
                      .+     ..++++||+|||+|++| ||+|+++||
T Consensus       448 ~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          448 KIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             CCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             hhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            22     22357899999999997 999999998

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.6e-46  Score=375.05  Aligned_cols=327  Identities=18%  Similarity=0.144  Sum_probs=259.6

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCcc-ccchhhhhhhhhccCcEEEec
Q 010854          125 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLALY  200 (499)
Q Consensus       125 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~-~~~~~~~~~~~l~~G~~~~~~  200 (499)
                      ..++++++++|||||||.||+|+++|+++...+....   ..++++++|+++..+|++ |..++...+.++..|+++++.
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            4678999999999999999999999999876554332   356889999999999984 666666688899999999988


Q ss_pred             CCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceeccccc
Q 010854          201 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG  278 (499)
Q Consensus       201 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~  278 (499)
                      +. .+++.+++.|+++++|++.++|+++..|++.....+.+  ++++|.+++||+++++++.+.+.+.+ ++++++.||+
T Consensus       169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  246 (443)
T 2y4o_A          169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL  246 (443)
T ss_dssp             CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence            64 47899999999999999999999999998764433333  57999999999999999999998776 8899999999


Q ss_pred             cce-ee-eeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCC
Q 010854          279 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  355 (499)
Q Consensus       279 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~  355 (499)
                      ||+ +. +...+.. .   ....+.+.+++.++|+| ++|++++.|+  .|||+|+.....             .+    
T Consensus       247 TE~~g~~~~~~~~~-~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~--~Gel~v~~~t~~-------------~~----  303 (443)
T 2y4o_A          247 SEVMGPGVACECVE-T---KDGPVIWEDHFYPEIIDPVTGEVLPDGS--QGELVFTSLTKE-------------AM----  303 (443)
T ss_dssp             TTTTEEEEEEECTT-T---CCSEEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS----
T ss_pred             hhhcCCeEEeccCC-C---CCceEEccCCeEEEEEcCCCCCCCCCCC--ceEEEEeCCCcc-------------cC----
Confidence            997 43 3332221 1   11245677899999999 6799999999  599999531110             11    


Q ss_pred             CCCCccccccCceeEeecC-ceE-----EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEE
Q 010854          356 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV  429 (499)
Q Consensus       356 ~~~~~~~~~TGD~~~~~~~-G~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~  429 (499)
                         ..+||+|||+|+++++ |++     ++.||.||+||++|++|+|.+||++|. .||+|.++++++++++..+ +.++
T Consensus       304 ---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~  378 (443)
T 2y4o_A          304 ---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD  378 (443)
T ss_dssp             ---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred             ---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence               2468999999999999 986     899999999999999999999999996 8999999999988776666 8889


Q ss_pred             EEEEecC--CCC---CCHHHHHHHHHHHHHhhcCCc-eeeeEEEEc--CCCCCCCCcHHHHHHH
Q 010854          430 IFVVLKK--GFT---SQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRVL  485 (499)
Q Consensus       430 ~~v~~~~--~~~---~~~~~l~~~~~~~~~~~l~~~-~~p~~~~~~--~~iP~t~~GKv~r~~l  485 (499)
                      ++|++.+  +..   .+.+++.+++    ++.|+.| ..|..+.++  ++||+|++||++|+..
T Consensus       379 a~v~~~~~~~~~~~~~~~~~l~~~l----~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~  438 (443)
T 2y4o_A          379 LAVELRSEAAASVTDGERAALAREL----QHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID  438 (443)
T ss_dssp             EEEEECHHHHTTCCHHHHHHHHHHH----HHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred             EEEEECCcccccchhhHHHHHHHHH----HHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence            9998865  321   1234455554    4455555 366677777  5999999999998653

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2e-46  Score=373.58  Aligned_cols=326  Identities=18%  Similarity=0.153  Sum_probs=260.6

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCc-cccchhhhhhhhhccCcEEEe
Q 010854          124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL  199 (499)
Q Consensus       124 ~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~~~  199 (499)
                      ...++++++++|||||||.||+|+++|+++...+....   ..++++++|+++..+|+ +|..++...+.++..|+++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34678999999999999999999999999876654332   35678999999999998 577776668889999999998


Q ss_pred             cCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceecccc
Q 010854          200 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG  277 (499)
Q Consensus       200 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg  277 (499)
                      .+. .+++.+++.|+++++|++.++|+++..|++.....+.+  ++++|.+++||+++++++.+.+.+.+ ++++++.||
T Consensus       166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG  243 (437)
T 2y27_A          166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG  243 (437)
T ss_dssp             CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred             CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence            764 57899999999999999999999999998764433333  57999999999999999999998776 789999999


Q ss_pred             ccce-ee-eeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCC
Q 010854          278 GTEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM  354 (499)
Q Consensus       278 ~tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~  354 (499)
                      +||+ +. +...+.. .   ....+.+.+++.++|+| ++|++++.|+  .|||+|+.....             .+   
T Consensus       244 ~TE~~g~~~~~~~~~-~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~t~~-------------~~---  301 (437)
T 2y27_A          244 LSEVMGPGVASECVE-T---KDGPTIWEDHFYPEIIDPETGEVLPDGE--LGELVFTSLTKE-------------AL---  301 (437)
T ss_dssp             ETTTTEEEEEECCTT-T---CSSCEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS---
T ss_pred             chhhcCCeeEEecCC-C---CCceeEccCceEEEEEcCCCCCCCCCCC--ccEEEEecCCcC-------------Cc---
Confidence            9997 43 3333221 1   11256677899999999 6799999999  599999531100             11   


Q ss_pred             CCCCCccccccCceeEeec-CceE-----EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEE
Q 010854          355 PMYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL  428 (499)
Q Consensus       355 ~~~~~~~~~~TGD~~~~~~-~G~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~  428 (499)
                          ..+||+|||+|++++ +|++     ++.||.||+||++|++|+|.+||++|. .||+|.++++++++++..+ +.+
T Consensus       302 ----~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l  375 (437)
T 2y27_A          302 ----PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVL  375 (437)
T ss_dssp             ----CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEE
T ss_pred             ----hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceE
Confidence                246899999999999 6985     899999999999999999999999996 8999999999998876666 889


Q ss_pred             EEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCc-eeeeEEEEc--CCCCCCCCcHHHHHH
Q 010854          429 VIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRV  484 (499)
Q Consensus       429 ~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~-~~p~~~~~~--~~iP~t~~GKv~r~~  484 (499)
                      +++|++.++...   +.+++.++    +++.|+.| ..|..+.++  ++||+|+ ||++|+.
T Consensus       376 ~a~v~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          376 TLNVEPCPETAPDTAAIQVAKQA----LAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             EEEECBCTTTTTCHHHHHHHHHH----HHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             EEEEEECCCccchhhhHHHHHHH----HHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            999998765432   22344444    55566666 367778888  5999999 9999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=2.6e-30  Score=251.38  Aligned_cols=238  Identities=15%  Similarity=0.066  Sum_probs=179.4

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh---cceeccCcCCcEEEeecCc-cccchhhhhhhhhccCcEEEe
Q 010854          124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL  199 (499)
Q Consensus       124 ~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~---~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~~~  199 (499)
                      ...++++++++|||||||.||+|+++|+++...+.+   ....+++.++|+++..+|+ +|..++...+.++..|+ +++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~  165 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF  165 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence            346789999999999999999999999999888774   3455678999999999999 89999888777799999 444


Q ss_pred             cCCCCChh-----------------------HHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCC
Q 010854          200 YQGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN  256 (499)
Q Consensus       200 ~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~  256 (499)
                      .. .+++.                       .+++.|+++++|++.++|+++..|++.......+++++|.+++|||+++
T Consensus       166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~  244 (369)
T 3hgu_A          166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN  244 (369)
T ss_dssp             CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred             Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence            43 34555                       7777999999999999999999998875444456789999999999999


Q ss_pred             hhhHHHHH-hhcccCceeccccccceeeeeecCCCCCCCcccccccc------CCCceEEEECC-CCCCCCCCCCcceee
Q 010854          257 VDDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEV  328 (499)
Q Consensus       257 ~~~~~~~~-~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~d~-~g~~~~~g~~~~Gei  328 (499)
                      +++.+.+. +.++++++++.||+||+++++..+..      .++|.+      .|+++++|+|+ +|++++.|+  .|||
T Consensus       245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl  316 (369)
T 3hgu_A          245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNV  316 (369)
T ss_dssp             HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEE
T ss_pred             HHHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEE
Confidence            99999999 78778999999999999876643321      147888      99999999996 999999999  5999


Q ss_pred             EecccccccccccccccccchhhcCCCCCCCccccccCceeEeecC--c-------eEEEecccCCeeeeCce
Q 010854          329 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--G-------YIIVQGRADDTMNLGGI  392 (499)
Q Consensus       329 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--G-------~l~~~gR~~d~i~~~G~  392 (499)
                      +|+......            .+         ..|+|||++++.+.  |       .+..++|.++..++.|.
T Consensus       317 ~vt~l~~~~------------~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          317 IVTHLSPWA------------FY---------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEETTE------------EE---------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             EEEEcCccc------------cc---------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            995322111            01         12899999987543  2       34566777777777663

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.59  E-value=1.8e-15  Score=118.51  Aligned_cols=96  Identities=21%  Similarity=0.303  Sum_probs=73.2

Q ss_pred             cccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHH---HHHHHHHHHHHhhc
Q 010854          381 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKL  457 (499)
Q Consensus       381 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~~~~~~~l  457 (499)
                      .|.||+|+++|.||||.+||++|. .||+|.++++++++++.++ +.+.++|+..++...+..   ++.+.+++++...+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~   78 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI   78 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence            599999999999999999999996 9999999999999988887 889999998887655543   34555555555544


Q ss_pred             CCceeeeEEEEc--CCCCCCCCcHHHH
Q 010854          458 NPLFKVSLVKVV--PEFPRTASNKLLR  482 (499)
Q Consensus       458 ~~~~~p~~~~~~--~~iP~t~~GKv~r  482 (499)
                      .   .+..+.++  ++||+| +||++|
T Consensus        79 g---v~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           79 L---VTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             S---SCCEEEEECTTCSCCC----CCC
T ss_pred             C---CccceEEEcCCeecCC-CCCcch
Confidence            2   23345565  489998 799877

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.87  E-value=3.4e-08  Score=98.70  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             chHHHHHHHccCCCCc------ccccc---eeEEEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCC
Q 010854          224 VPSLVKAWRNTNCLEG------LDWTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQP  293 (499)
Q Consensus       224 ~P~~l~~l~~~~~~~~------~~l~~---l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~  293 (499)
                      .|.+++.+.+...+..      .=|++   +..++.||  + ..-...++....+..++ ..|++||+...+...+...+
T Consensus       277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p  353 (609)
T 4b2g_A          277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKP  353 (609)
T ss_dssp             CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCG
T ss_pred             CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCc
Confidence            3445555655433221      12677   44555565  2 33344555444456666 89999997543322221111


Q ss_pred             Cccccccc-cCCC-ceEEEEC--CC-----C---------CCCCCCCCcceeeEecccccccccccccccccchhhcCCC
Q 010854          294 QAFGAFST-ATMT-AGLVILD--EC-----G---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP  355 (499)
Q Consensus       294 ~~~~~~g~-~~~~-~~~~i~d--~~-----g---------~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~  355 (499)
                         +..+. .+|+ .-.+.++  +.     +         ..+..|+  .+|++++.. .|             .++   
T Consensus       354 ---~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~--~YelViTt~-~G-------------L~R---  411 (609)
T 4b2g_A          354 ---SEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGK--EYELVITTY-AG-------------LYR---  411 (609)
T ss_dssp             ---GGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTC--EEEEEEECT-TS-------------CCS---
T ss_pred             ---ccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCC--eEEEehhhh-hh-------------hhh---
Confidence               11121 1222 3344443  22     1         1345565  377777322 11             333   


Q ss_pred             CCCCccccccCceeEeec----CceEEEecccCCeeeeCceeechHHHHHHHhhcC-----c--cceeeeEEE
Q 010854          356 MYKGMCLRRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS  417 (499)
Q Consensus       356 ~~~~~~~~~TGD~~~~~~----~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~v~~  417 (499)
                             |++||+++++.    ..++.+.||.++++++.|+++++.+||+++.++.     .  .|.|..++.
T Consensus       412 -------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~  477 (609)
T 4b2g_A          412 -------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA  477 (609)
T ss_dssp             -------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred             -------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence                   89999999974    4789999999999999999999999999986322     2  355666543

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.85  E-value=3.6e-08  Score=98.43  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             ccc---eeEEEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCCCccccccc-cCCC-ceEEEEC--C
Q 010854          242 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVILD--E  313 (499)
Q Consensus       242 l~~---l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~d--~  313 (499)
                      |++   +..++.||-   ..-...++...++.+++ ..|++||+...+...+...+   ...+. .+|+ .-.+.++  +
T Consensus       296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~---~~~~~~L~~~~~ffEFip~~~  369 (581)
T 4eql_A          296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKP---EDVSYTFMPNMSYFEFIPMDG  369 (581)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCG---GGCCEEECTTSSEEEEEECST
T ss_pred             CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCc---ccCceeecCCcEEEEEEeccc
Confidence            677   555666662   33445555555566666 89999996543322221111   11122 1222 3344553  2


Q ss_pred             C--CC-----CCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeec----CceEEEecc
Q 010854          314 C--GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR  382 (499)
Q Consensus       314 ~--g~-----~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~G~l~~~gR  382 (499)
                      .  .+     .+..|+  .+|++++.. .|             .++          |++||+++++.    ..++.|.||
T Consensus       370 ~~~~~~v~l~eVe~G~--~YelViTt~-~G-------------L~R----------Yr~GD~v~v~~f~~~~p~i~f~gR  423 (581)
T 4eql_A          370 GDKNDVVDLEDVKLGC--TYEPVVTNF-AG-------------LYR----------MRVGDIVLVTGFYNNAPQFKFVRR  423 (581)
T ss_dssp             TCCSSCEEGGGCCTTC--EEEEEEECS-SS-------------CCS----------EECCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCcEeCHHHcCCCc--eEEEEEeec-cc-------------eee----------EEcCCEEEEcccCCCCcEEEEEEe
Confidence            2  11     234555  377877432 11             232          89999999976    467999999


Q ss_pred             cCCeeeeCceeechHHHHHHHhhcC
Q 010854          383 ADDTMNLGGIKTSSVEIERVCDQAD  407 (499)
Q Consensus       383 ~~d~i~~~G~~v~~~~iE~~l~~~~  407 (499)
                      .++++.+.|+++++++||+++.+..
T Consensus       424 ~~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          424 ENVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             cCCEEEeeeeECCHHHHHHHHHHHH
Confidence            9999999999999999999997443

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.80  E-value=8.4e-08  Score=95.51  Aligned_cols=145  Identities=16%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             ccceeE--EEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCCCccccccc-cCCC-ceEEEE--CCC
Q 010854          242 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVIL--DEC  314 (499)
Q Consensus       242 l~~l~~--i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~--d~~  314 (499)
                      |++++.  ++.+|..  ..-...++...++.++. ..|++||+...+...+...+   +..+. .+|+ .-.+.+  ++.
T Consensus       301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~---~~~~~~L~p~~~ffEFiP~~~~  375 (581)
T 4epl_A          301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSP---EEATFAVIPNLGYFEFLPVSET  375 (581)
T ss_dssp             CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCT---TTCCEEECTTSCEEEEEEC---
T ss_pred             CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCc---cccceeecCCcEEEEEEecccc
Confidence            677753  3444432  33334555445566666 89999997544332222111   11111 1222 223333  322


Q ss_pred             C---------CCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecC----ceEEEec
Q 010854          315 G---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQG  381 (499)
Q Consensus       315 g---------~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~----G~l~~~g  381 (499)
                      +         ..+..|+  .+|++++.. .+             .++          |++||++++..-    .++.|.|
T Consensus       376 ~~~~~~~v~l~eve~G~--~YelviTt~-~G-------------L~R----------Yr~GD~v~v~g~~~~~p~~~~~g  429 (581)
T 4epl_A          376 GEGEEKPVGLTQVKIGE--EYEVVITNY-AG-------------LYR----------YRLGDVVKVIGFYNNTPQLKFIC  429 (581)
T ss_dssp             ----CCCEEGGGCCTTC--EEEEEEEST-TS-------------CSS----------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCceeeHHHcCCCC--eEEEEEeec-cc-------------eee----------EEcCCEEEEecccCCCcEEEEEe
Confidence            2         1345666  388887432 01             232          899999998752    5789999


Q ss_pred             ccCCeeeeCceeechHHHHHHHhhcC-------ccceeeeEEE
Q 010854          382 RADDTMNLGGIKTSSVEIERVCDQAD-------ESILETAAIS  417 (499)
Q Consensus       382 R~~d~i~~~G~~v~~~~iE~~l~~~~-------~~v~~~~v~~  417 (499)
                      |.++++++.|+++++.+||+++.+..       -.|.|..++.
T Consensus       430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~  472 (581)
T 4epl_A          430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI  472 (581)
T ss_dssp             ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred             ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence            99999999999999999999986322       2366666655

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=84.57  E-value=4.5  Score=39.92  Aligned_cols=95  Identities=11%  Similarity=-0.051  Sum_probs=72.5

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .+|.+|++.         .+..+|+..+...+..+..   ..+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus        19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~   88 (509)
T 3ivr_A           19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNY   88 (509)
T ss_dssp             STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred             CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCC
Confidence            357777664         1246788877666555444   4588999999888776533 33458899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVPSLVKA  230 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~  230 (499)
                      ....+.+...++..++..++..+.....
T Consensus        89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~  116 (509)
T 3ivr_A           89 RLNADEIAFVLGDGAPSVVVAGTDYRDI  116 (509)
T ss_dssp             TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred             CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence            8888999999999999999998876655

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=84.28  E-value=2  Score=42.99  Aligned_cols=85  Identities=9%  Similarity=-0.086  Sum_probs=66.2

Q ss_pred             EecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec
Q 010854          147 PWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT  223 (499)
Q Consensus       147 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~  223 (499)
                      .+|+..+...+..+..   ..+++++|++...++-+.. .++.+++++..|+..+.+.+....+.+...++..++..++.
T Consensus        50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~  128 (550)
T 3rix_A           50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV  128 (550)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred             EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence            5788776655544443   4589999999888776532 34458899999999999988888899999999999999999


Q ss_pred             chHHHHHHH
Q 010854          224 VPSLVKAWR  232 (499)
Q Consensus       224 ~P~~l~~l~  232 (499)
                      ....+..+.
T Consensus       129 ~~~~~~~~~  137 (550)
T 3rix_A          129 SKKGLQKIL  137 (550)
T ss_dssp             CGGGHHHHH
T ss_pred             cHHHHHHHH
Confidence            887666543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=84.13  E-value=7  Score=38.92  Aligned_cols=99  Identities=15%  Similarity=-0.012  Sum_probs=72.5

Q ss_pred             CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854          127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS  203 (499)
Q Consensus       127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~  203 (499)
                      ++.+|++....+     ....+|+..+...+..+.   ...+++++|++...++-+.. .++.+++++..|+..+.+++.
T Consensus        32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~  105 (541)
T 1v25_A           32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANPR  105 (541)
T ss_dssp             TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred             CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCcc
Confidence            466776543211     245678877766554444   34588999999888776532 334488999999999999888


Q ss_pred             CChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          204 PLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       204 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      ...+.+...++..++..++..+.+...+
T Consensus       106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~  133 (541)
T 1v25_A          106 LSPKEIAYILNHAEDKVLLFDPNLLPLV  133 (541)
T ss_dssp             SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred             cCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence            8889999999999999999988766544

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=83.05  E-value=5  Score=40.04  Aligned_cols=103  Identities=10%  Similarity=-0.043  Sum_probs=74.1

Q ss_pred             CCCeEEEEecCCC-CCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          127 VDAVVNILFSSGT-TGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       127 ~~~~a~i~~TSGt-TG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      ++.+|++....+. .+.  ...+|+..+...+..+.   ...+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus        33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~  109 (549)
T 3g7s_A           33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPINP  109 (549)
T ss_dssp             TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred             CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccCC
Confidence            5778776653221 121  23567777665554444   34588999999888876532 33448899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVPSLVKAWR  232 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  232 (499)
                      ....+.+...++..+++.++..+.....+.
T Consensus       110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~  139 (549)
T 3g7s_A          110 MYKSFELEHILNDSEATTLVVHSMLYENFK  139 (549)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence            888899999999999999999887665543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=82.21  E-value=9.2  Score=38.37  Aligned_cols=102  Identities=8%  Similarity=-0.057  Sum_probs=73.8

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---ec-cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ  201 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~  201 (499)
                      .++.+|++....  .|  ....+|+..+...+..+..   .. +++++|++...++-+.. .++.+++++..|+..+.++
T Consensus        56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl~  130 (570)
T 3c5e_A           56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPGT  130 (570)
T ss_dssp             SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEECC
T ss_pred             CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEecC
Confidence            357777765421  11  2356788777655544443   34 78999999888776543 2344889999999999998


Q ss_pred             CCCChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854          202 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR  232 (499)
Q Consensus       202 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~  232 (499)
                      +....+.+...++..++..++..+.....+.
T Consensus       131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  161 (570)
T 3c5e_A          131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD  161 (570)
T ss_dssp             TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence            8888899999999999999998877665553

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=80.28  E-value=4.5  Score=40.23  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=71.8

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .++.+|++...   +|    ..+|+..+...+..+..   ..+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus        35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~  106 (536)
T 3ni2_A           35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP  106 (536)
T ss_dssp             STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred             CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence            46777765422   22    34788776655544443   4588999999888776533 33448899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      ....+.+...++..++..++..+.....+
T Consensus       107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~  135 (536)
T 3ni2_A          107 FSTPAELAKHAKASRAKLLITQACYYEKV  135 (536)
T ss_dssp             TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred             CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence            88889999999999999999887655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	499
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-65
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-56
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-45
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	8e-43
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-39
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-36
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-31

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  219 bits (559), Expect = 6e-65
 Identities = 122/510 (23%), Positives = 206/510 (40%), Gaps = 35/510 (6%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +AI MPM   A +  LA    G V   I   F+   +A  +  S ++ + T D  +
Sbjct: 127 KGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGV 186

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYY 120
           R GR  PL   V  A  LK   + ++ + + +     D+ W   +D             +
Sbjct: 187 RAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 244

Query: 121 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLG 179
            P     +  + IL++SG+TG+PK +  T    +   A  + ++ D   GD+Y    ++G
Sbjct: 245 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVG 304

Query: 180 WVMGPV-ILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN 235
           WV G   +L+     GAT  +++G P   +     + V    V +L T P+ ++A     
Sbjct: 305 WVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEG 364

Query: 236 --CLEGLDWTKIRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLL 291
              +EG D + +R   S GE  N +   W   K       ++++   TE +  ++   L 
Sbjct: 365 DKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLP 423

Query: 292 QPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGE--VGLFPLYLGASDRLLNA 344
                 A S      G    ++D  G P          + +   G      G  +R    
Sbjct: 424 GAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERF--- 480

Query: 345 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
             E+ YF              GD  +R   GY  + GR DD +N+ G +  + EIE    
Sbjct: 481 --EQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL- 532

Query: 405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
            A   I E A + +  A  G + +  +V L  G    P+    +    ++ ++ PL    
Sbjct: 533 VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIGPLATPD 590

Query: 465 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 494
           ++      P+T S K++RR+LR     + S
Sbjct: 591 VLHWTDSLPKTRSGKIMRRILRKIAAGDTS 620

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  195 bits (497), Expect = 4e-56
 Identities = 106/506 (20%), Positives = 197/506 (38%), Gaps = 22/506 (4%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           KGD +A+ MPM   A+I  LAI   G +   +   F++  +  R+    +K + T D   
Sbjct: 115 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 174

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
           RGG+       V  A      V   +             + +D   + +      YY   
Sbjct: 175 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCT 234

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 182
               +  + +L++SG+TG PK +  +    +        +  D    DV+    ++GW+ 
Sbjct: 235 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 294

Query: 183 GPV-ILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--C 236
           G   +++   L G    +++G+P   ++ ++   + +  VT     P+ ++  +      
Sbjct: 295 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY 354

Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQ--GSLLQ 292
           +E      +R   S GE    +   W S K       I+++   TE  S  +      + 
Sbjct: 355 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT 414

Query: 293 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR 352
           P   G+ S        V+LD       +     G + +   +   +  +   +H+     
Sbjct: 415 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK-NHDRYLDT 473

Query: 353 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 412
            +  Y G      GD   +   GYI + GR DD +N+ G + S+ EIE      D  + E
Sbjct: 474 YLNPYPGYY--FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI-IEDPIVAE 530

Query: 413 TAAISVSPAGGGPEVLVIFVVLKKGFTSQP------DKLKMIFSKAIQSKLNPLFKVSLV 466
            A +  +    G + +  FVVLK   +           +K      ++  + P     L+
Sbjct: 531 CAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI 589

Query: 467 KVVPEFPRTASNKLLRRVLRDQIKHE 492
            +V + P+T S K++RR+LR  +  E
Sbjct: 590 ILVDDLPKTRSGKIMRRILRKILAGE 615

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  163 bits (412), Expect = 8e-45
 Identities = 100/507 (19%), Positives = 167/507 (32%), Gaps = 56/507 (11%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
            GD +A       R +  Y A+   G V+ +     + +EIA  L  ++ K +     +L
Sbjct: 64  VGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL 123

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                            ++AI          + + E+                     PV
Sbjct: 124 ---------------PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PV 164

Query: 124 YNPVDAVVNILFSSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
             P  A   + +++GTTG PK        L      A       L   DV      +  V
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
               + +++ L GA   L        S  +     GVT    VP++  A  +     G  
Sbjct: 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR 284

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGA 298
              +R     G  +          +     + +  G TE S   +Q    S L+  +   
Sbjct: 285 LKTLRRLVVGGSAAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEE 342

Query: 299 FSTATMTAG-------LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADH 346
             T     G       L + DE G P P D   +GEV      +   Y G  +   +A  
Sbjct: 343 KLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT 402

Query: 347 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 406
            + +F            R GDI      GY+ ++ R  D +  GG   SSV++E      
Sbjct: 403 PDGFF------------RTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL-MG 449

Query: 407 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 466
              + E A +++       E  +  VV +    +  +    +    +++           
Sbjct: 450 HPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEE----LNEHLLKAGFAKWQLPDAY 504

Query: 467 KVVPEFPRTASNKLLRRVLRDQIKHEL 493
               E PRT++ K L+R LR+Q K+  
Sbjct: 505 VFAEEIPRTSAGKFLKRALREQYKNYY 531

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  157 bits (397), Expect = 8e-43
 Identities = 78/494 (15%), Positives = 158/494 (31%), Gaps = 36/494 (7%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
               I +    +++  +  L  +  G  V    D +  RE+   + +S+   +F     L
Sbjct: 71  TNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL 130

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
           +          ++     K I++ +  +  G       ++        +Y   P      
Sbjct: 131 QKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP----ES 182

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 180
           ++    +  I+ SSG+TG PK +               +      +              
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242

Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
             G        + G  + L      E  F + +QD  +     VP+L   +  +  ++  
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY 301

Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 300
           D + +   AS G   + +    ++ +     I +  G TE +SA +  +       GA  
Sbjct: 302 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-ITPEGDDKPGAVG 360

Query: 301 TATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 356
                    ++D + G     +Q    CV    +   Y+       N +           
Sbjct: 361 KVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN------NPEATNALIDKDGW 414

Query: 357 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 416
                    GDI       +  +  R    +   G + +  E+E +  Q    I +    
Sbjct: 415 L------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IFDAGVA 467

Query: 417 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRT 475
            +     G E+    VVL+ G T    ++       + S++    K+   V  V E P+ 
Sbjct: 468 GLPDDDAG-ELPAAVVVLEHGKTMTEKEIV----DYVASQVTTAKKLRGGVVFVDEVPKG 522

Query: 476 ASNKLLRRVLRDQI 489
            + KL  R +R+ +
Sbjct: 523 LTGKLDARKIREIL 536

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  147 bits (372), Expect = 2e-39
 Identities = 81/490 (16%), Positives = 160/490 (32%), Gaps = 58/490 (11%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           K   + I M  ++   I  LA++ AG   V I   +    I   L  S+A+ + TQ  ++
Sbjct: 72  KDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV 131

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                                ++  I  +  + + E+D              R      V
Sbjct: 132 H--------------------LIHNIQFNGQVEIFEED----------TIKIREGTNLHV 161

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
            +    +  ++++SGTTG PK                   +++   D      ++ +   
Sbjct: 162 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDAS 221

Query: 184 PVILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241
              +F + L GA+L +     +     F +++    +TV+               L+   
Sbjct: 222 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPER 275

Query: 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 301
              I++  + G  ++         K  Y         T  ++ ++               
Sbjct: 276 ILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATK-ETIGHSVPIGA 334

Query: 302 ATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYK 358
                 + I+DE        +    C+G  GL   Y          +     F   P   
Sbjct: 335 PIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWK------RPELTSQKFVDNPFVP 388

Query: 359 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 418
           G  L + GD  +    G I   GR D+ + + G +    E+E +  +    I ETA    
Sbjct: 389 GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMY-ISETAVSVH 447

Query: 419 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTAS 477
                    L  + V +K      ++L+    +    +L P + + S    + + P T++
Sbjct: 448 KDHQEQ-PYLCAYFVSEKHIP--LEQLR----QFSSEEL-PTYMIPSYFIQLDKMPLTSN 499

Query: 478 NKLLRRVLRD 487
            K+ R+ L +
Sbjct: 500 GKIDRKQLPE 509

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  138 bits (348), Expect = 4e-36
 Identities = 87/493 (17%), Positives = 158/493 (32%), Gaps = 36/493 (7%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
           + D + + +P       +  A+   G + V    S  + EI      ++A      D   
Sbjct: 74  QKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYS 133

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                          A      LP + N +     E+ L  +D  +     P        
Sbjct: 134 G--------FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVA 185

Query: 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 183
           +        +  S G+TG  K IP T    I           L    VY     +     
Sbjct: 186 F--------LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP 237

Query: 184 -PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 242
                    L      +   SP        ++   VT+   VP L   W +       D 
Sbjct: 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDL 297

Query: 243 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 302
           + ++     G   + +    + +  +   + +  G  E    Y +    +          
Sbjct: 298 SSLQVLQVGGAKFSAEAARRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356

Query: 303 -TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 361
            +      + D+            GE G   L       +      E +        G  
Sbjct: 357 MSPYDESRVWDDHDRDVKP-----GETGH--LLTRGPYTIRGYYKAEEHNAASFTEDGFY 409

Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
             R GDI++ T  GYI+V+GRA D +N GG K ++ E+E     A  ++ + A +S+   
Sbjct: 410 --RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQ 466

Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 480
             G E   +F++ +       +         ++ +    +K+   V+ V  FP+T   K+
Sbjct: 467 FLG-ERSCVFIIPRDEAPKAAE-----LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520

Query: 481 LRRVLRDQIKHEL 493
            ++ LR+ I  +L
Sbjct: 521 SKKALREAISEKL 533

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  125 bits (313), Expect = 1e-31
 Identities = 85/491 (17%), Positives = 140/491 (28%), Gaps = 46/491 (9%)

Query: 4   KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
               +A+  P +   VI  LA+   G V   +     + E+A  ++  +           
Sbjct: 53  PQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV--- 109

Query: 64  RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 123
                              A  +   G+   I      +   +  S       P      
Sbjct: 110 ---------------GRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQR---- 150

Query: 124 YNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 181
                    I ++SGTTG PKA   P     S          +     +V      L  V
Sbjct: 151 --EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208

Query: 182 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-- 239
           +G   +  + L      +           + VQ   VT L   P+ + A        G  
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268

Query: 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 299
           L    +R     G T  + D +  +          +  GT  +   +     +     A 
Sbjct: 269 LKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAP 326

Query: 300 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKG 359
              +    + I         + +     V               A  E    +       
Sbjct: 327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE--KLQDGWYRTS 384

Query: 360 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 419
                  +       G + + GR DD +  GG      EIERV   A   + E   I ++
Sbjct: 385 DVAVWTPE-------GTVRILGRVDDMIISGGENIHPSEIERVLGTAPG-VTEVVVIGLA 436

Query: 420 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 478
               G + +   VV + G T   D L        +S     FK      ++ + P+ A N
Sbjct: 437 DQRWG-QSVTACVVPRLGETLSADALD----TFCRSSELADFKRPKRYFILDQLPKNALN 491

Query: 479 KLLRRVLRDQI 489
           K+LRR L  Q+
Sbjct: 492 KVLRRQLVQQV 502

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	91.71
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	91.01
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	85.99
d1amua_	514	Phenylalanine activating domain of gramicidin synt	85.41
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	83.99

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.5e-70  Score=568.80  Aligned_cols=477  Identities=25%  Similarity=0.361  Sum_probs=376.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhh----
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG----   77 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~----   77 (499)
                      |++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++.................    
T Consensus       125 v~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~  204 (643)
T d1pg4a_         125 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN  204 (643)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTS
T ss_pred             CCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999998765443333222222211    


Q ss_pred             -cCCC--ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854           78 -AAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI  154 (499)
Q Consensus        78 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~  154 (499)
                       ....  ..+++.......... ........+......     ....+...+++|+++|+|||||||.||||+++|++++
T Consensus       205 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l  278 (643)
T d1pg4a_         205 PNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKAS-----PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL  278 (643)
T ss_dssp             TTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSC-----SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHH
T ss_pred             cccccceEEEEeccCCcccccc-cccchhhhhhhcccC-----cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHH
Confidence             1111  222222211111111 111122333333221     2233445678999999999999999999999999976


Q ss_pred             HHhh-hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854          155 RCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK  229 (499)
Q Consensus       155 ~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~  229 (499)
                      .... .....++++++|++++..|++|.+++.. ++.+|++|+++++.++.   .++..+++.|+++++|+++++|++++
T Consensus       279 ~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~  358 (643)
T d1pg4a_         279 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR  358 (643)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHH
Confidence            5544 3445578999999999999999999876 78899999999987542   36789999999999999999999999


Q ss_pred             HHHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc--cCceeccccccceeeeeecCCC-CCCCccccccccCC
Q 010854          230 AWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATM  304 (499)
Q Consensus       230 ~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~-~~~~~~~~~g~~~~  304 (499)
                      .|++...  ....++++||.++++|+++++++.+++.+.+.  ++.+++.||+||+++.+..... ......+++|.|++
T Consensus       359 ~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~  438 (643)
T d1pg4a_         359 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF  438 (643)
T ss_dssp             HHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT
T ss_pred             HHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccC
Confidence            9988754  34667899999999999999999999988874  4679999999999876554433 23456789999999


Q ss_pred             CceEEEECCCCCCCCCCCCcceeeEecccccccc-cccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc
Q 010854          305 TAGLVILDECGVPYPDDQPCVGEVGLFPLYLGAS-DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA  383 (499)
Q Consensus       305 ~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~  383 (499)
                      |++++|+|++|++++.|+  .|||+|.....+.. .++.+.+.+...+.    ...++||+|||+|++|++|+|+++||.
T Consensus       439 g~~v~ivd~~g~~~~~g~--~Gel~v~~~~p~~~~~~~~~~~~~~~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~  512 (643)
T d1pg4a_         439 GVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFEQTYF----STFKNMYFSGDGARRDEDGYYWITGRV  512 (643)
T ss_dssp             TCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHHHHHH----SSSTTSEEEEEEEEECTTSCEEEEEES
T ss_pred             CCEEEEECCCCCCCCCCc--eEEEEEecCCCcccccccCChhhchhhhc----ccCCCeEEcCCEEEECCCceEEEeccc
Confidence            999999999999999998  59999943222221 11222222222111    245679999999999999999999999


Q ss_pred             CCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee
Q 010854          384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV  463 (499)
Q Consensus       384 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p  463 (499)
                      ||+||++|++|+|.|||++|. .||+|.+++|++++++..| +.+++||+++++...+ +++.+.++++++++|++|++|
T Consensus       513 dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~~a~Vv~~~~~~~~-~~~~~~i~~~~~~~L~~~~vP  589 (643)
T d1pg4a_         513 DDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLATP  589 (643)
T ss_dssp             SSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGGCC
T ss_pred             ccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCcccCc
Confidence            999999999999999999997 8999999999999998888 8999999999876655 456667888888999999999


Q ss_pred             eEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          464 SLVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       464 ~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      +.|+++++||+|++|||+|++|++++..+.
T Consensus       590 ~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         590 DVLHWTDSLPKTRSGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             SEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             cEEEEECCCCCCCCcCccHHHHHHHhcCCc
Confidence            999999999999999999999999997753

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-68  Score=552.32  Aligned_cols=479  Identities=23%  Similarity=0.329  Sum_probs=365.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhh---hhc
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGA   78 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~---~~~   78 (499)
                      |++||+|+|+++|++++++++|||+++|++++|+++.++++++.+++++++++.++++...............+   ...
T Consensus       113 v~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (640)
T d1ry2a_         113 VRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE  192 (640)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTS
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhh
Confidence            78999999999999999999999999999999999999999999999999999999988654433332222211   111


Q ss_pred             CCCceEEecc--cCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH
Q 010854           79 APLKAIVLPA--IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC  156 (499)
Q Consensus        79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~  156 (499)
                      ..........  .......................     ..........++|+++++|||||||.||||+++|++++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~  267 (640)
T d1ry2a_         193 TPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKY-----KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLG  267 (640)
T ss_dssp             CTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTS-----CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHH
T ss_pred             hcccceeeeeccccccccccccccccccccccccc-----ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHH
Confidence            1111111111  11111101111111222222211     1223344456789999999999999999999999997776


Q ss_pred             hhhcc-eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854          157 TAEGW-AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAW  231 (499)
Q Consensus       157 ~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l  231 (499)
                      ..... ..+.++++|++++++|++|.+++.. ++.+++.|+++++.+..   .++..+++.|+++++|++.++|++++.|
T Consensus       268 ~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  347 (640)
T d1ry2a_         268 ALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL  347 (640)
T ss_dssp             HHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred             HHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHH
Confidence            55444 4567899999999999999999775 88899999999887643   2568899999999999999999999999


Q ss_pred             HccCC--CCcccccceeEEEeecCCCChhhHHHHHhhccc--CceeccccccceeeeeecCCC--CCCCccccccccCCC
Q 010854          232 RNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMT  305 (499)
Q Consensus       232 ~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~--~~i~~~yg~tE~~~~~~~~~~--~~~~~~~~~g~~~~~  305 (499)
                      .+...  ....++++||.+.++|+++++++.+++.+.++.  ..+++.||+||++........  ......+++|.|+++
T Consensus       348 ~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g  427 (640)
T d1ry2a_         348 KRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFG  427 (640)
T ss_dssp             TTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTT
T ss_pred             HhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCC
Confidence            87654  346779999999999999999999999988753  468999999999876544333  234567899999999


Q ss_pred             ceEEEECCCCCCCCCCCCcceeeEe-c--ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecc
Q 010854          306 AGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR  382 (499)
Q Consensus       306 ~~~~i~d~~g~~~~~g~~~~Gei~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR  382 (499)
                      ++++|+|+.+.....+....||+++ +  +.++.+  ++.+++.+...|..    +.++||+|||+|++|++|+|+++||
T Consensus       428 ~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~g--y~~~~e~t~~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR  501 (640)
T d1ry2a_         428 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART--IWKNHDRYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGR  501 (640)
T ss_dssp             CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCE--ETTCHHHHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSC
T ss_pred             ceEEEEeCCCCcccCCCCceEEEEEEecCCCcccc--cccCHHHHHhhhcc----CCCCeEEcCCceeECCCCCEEEEEc
Confidence            9999999655443222222599998 3  333332  33344433333321    4568999999999999999999999


Q ss_pred             cCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCH------HHHHHHHHHHHHhh
Q 010854          383 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP------DKLKMIFSKAIQSK  456 (499)
Q Consensus       383 ~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~~~~~~~  456 (499)
                      .||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++++|+++++...+.      +++.+++.+.++++
T Consensus       502 ~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  579 (640)
T d1ry2a_         502 VDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKD  579 (640)
T ss_dssp             TTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHH
T ss_pred             CCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999996 8999999999999998888 89999999988654322      45778888889999


Q ss_pred             cCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854          457 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       457 l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~  493 (499)
                      |++|++|+.|+++++||+|++|||+|++||++++++.
T Consensus       580 L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~  616 (640)
T d1ry2a_         580 IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES  616 (640)
T ss_dssp             TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred             CCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCc
Confidence            9999999999999999999999999999999987653

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1e-64  Score=518.52  Aligned_cols=464  Identities=16%  Similarity=0.180  Sum_probs=358.5

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|++++++.+|+++...      +.+.+.....+.
T Consensus        69 i~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~  142 (541)
T d1lcia_          69 LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPI  142 (541)
T ss_dssp             CCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTT
T ss_pred             cCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeecccc------ccchhccccccc
Confidence            78999999999999999999999999999999999999999999999999999999988532      333444444444


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCC--CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~  159 (499)
                      ...++.......    ......+.+........  ............++++++++|||||||.||+|+++|+++.....+
T Consensus       143 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~  218 (541)
T d1lcia_         143 IQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH  218 (541)
T ss_dssp             CCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred             cceeeeecCCcc----ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhh
Confidence            444433322210    12333344433322111  112223334456789999999999999999999999998876655


Q ss_pred             ccee---ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854          160 GWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC  236 (499)
Q Consensus       160 ~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~  236 (499)
                      ....   ..+.++++++.++|++|.++....+..+..|+..+... ..........+..+++|.+.++|+++..+++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~  297 (541)
T d1lcia_         219 ARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL  297 (541)
T ss_dssp             HTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccccc-ccccchhHHHHhhhhccccccCcccccccccccc
Confidence            5443   35778999999999999999988888888888887775 4567888899999999999999999999999888


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECG  315 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g  315 (499)
                      ....++++++.+++||+.+++....++.+.+....+++.||+||+++.++.... .....+++|+|+|+++++|+| ++|
T Consensus       298 ~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~~~~~~~i~d~d~~  376 (541)
T d1lcia_         298 IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTG  376 (541)
T ss_dssp             GGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCC-C---CCCCBEECTTCEEEEECTTTC
T ss_pred             ccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCc-ccCCCCccccccCCCEEEEEECCCC
Confidence            888889999999999999999999999988866789999999999886665443 445678999999999999999 789


Q ss_pred             CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854          316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT  394 (499)
Q Consensus       316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v  394 (499)
                      ++++.|+  .|||+| ++..+.++  +.+...+...      ..+++||+|||+|+++++|++++.||.+|+||++|++|
T Consensus       377 ~~~~~g~--~Gel~v~g~~~~~gY--~~~~~~~~~~------~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v  446 (541)
T d1lcia_         377 KTLGVNQ--RGELCVRGPMIMSGY--VNNPEATNAL------IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV  446 (541)
T ss_dssp             CBCCTTC--CEEEEEESTTSCSEE--TTBHHHHHHH------BCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEE
T ss_pred             cCCCCCC--eEEEEEccCccCCee--CCChhhhhhc------ccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEE
Confidence            9999999  599999 55544432  1122222212      24568999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCce-eeeEEEEcCCCC
Q 010854          395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF-KVSLVKVVPEFP  473 (499)
Q Consensus       395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~p~~~~~~~~iP  473 (499)
                      +|.+||++|. .||+|.+++|++++++..+ ++++++|+++++...+.+++.+++    +++|.++. .|..++++++||
T Consensus       447 ~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~~----~~~l~~~~~~p~~i~~v~~lP  520 (541)
T d1lcia_         447 APAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDYV----ASQVTTAKKLRGGVVFVDEVP  520 (541)
T ss_dssp             CHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHHH----HHHSCGGGSCTTEEEEESSCC
T ss_pred             CHHHHHHHHH-hCCCccEEEEEEEECCCCC-EEEEEEEEECCCCCCCHHHHHHHH----HHhCCccccCCcEEEEeCCCC
Confidence            9999999996 9999999999999988777 899999999988777777766664    45677665 578999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhhh
Q 010854          474 RTASNKLLRRVLRDQIKHEL  493 (499)
Q Consensus       474 ~t~~GKv~r~~l~~~~~~~~  493 (499)
                      +|++|||+|++|++++.++-
T Consensus       521 ~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         521 KGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             C-----CCHHHHHHHHHHHT
T ss_pred             cCCCcCccHHHHHHHHHHhC
Confidence            99999999999999998763

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-64  Score=514.45  Aligned_cols=458  Identities=21%  Similarity=0.202  Sum_probs=334.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|++|.++++++.++|++++++.++++....      ..........+.
T Consensus        62 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~  135 (534)
T d1v25a_          62 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKT  135 (534)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSS
T ss_pred             cCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccc
Confidence            78999999999999999999999999999999999999999999999999999999988543      233333333333


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh--h
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA--E  159 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~--~  159 (499)
                      ....+.......      ......+....       .........++++++++|||||||.||+|+++|.+++..+.  .
T Consensus       136 ~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~  202 (534)
T d1v25a_         136 VQHFVVMDEKAP------EGYLAYEEALG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS  202 (534)
T ss_dssp             CCEEEESSSCCC------TTCEEHHHHCC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT
T ss_pred             cceeEEeecccc------ccccccccccc-------ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhh
Confidence            333332221110      11111111111       11223345678999999999999999999999999976553  3


Q ss_pred             cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ....+.+..+++++..+|++|.+++...+..+..|+++++.++.+++..+...++++++|++.++|+++..++.......
T Consensus       203 ~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~  282 (534)
T d1v25a_         203 LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG  282 (534)
T ss_dssp             STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred             hhcccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc
Confidence            33456678899999999999999999888888889988888878889999999999999999999999999988777677


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCC----------CccccccccCCCceEE
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLV  309 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~~  309 (499)
                      .++++||.+++||+++++...+++...  +.++++.||+||++..+........          ...+++|+|+||++++
T Consensus       283 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~  360 (534)
T d1v25a_         283 HRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR  360 (534)
T ss_dssp             CCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred             ccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEE
Confidence            789999999999999999998888643  7889999999999987765443221          1246899999999999


Q ss_pred             EECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeee
Q 010854          310 ILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN  388 (499)
Q Consensus       310 i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~  388 (499)
                      |+|++|++++.+..++|||+| ++..+.+  ++.+++.+...+      ..++||+|||+|++++||+++++||.+|+||
T Consensus       361 i~d~~~~~~~~~~~~~Gel~v~g~~v~~g--Y~~~~~~t~~~~------~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~  432 (534)
T d1v25a_         361 VADEEGRPVPKDGKALGEVQLKGPWITGG--YYGNEEATRSAL------TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK  432 (534)
T ss_dssp             EECTTSCBCCSSSCCCEEEEEESTTSBSS--CBTCHHHHHTTB------CTTSCEEEEEEEEECTTCCEEEEEESSCEEE
T ss_pred             EECCCCCCCCCCCCeeEEEEEcCCcccce--ecCChhhhhhhc------ccCCCCccCceeEECCCccEEEecccccEEE
Confidence            999999999875544799999 6655543  222333322222      4568999999999999999999999999999


Q ss_pred             eCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEE
Q 010854          389 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV  468 (499)
Q Consensus       389 ~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~  468 (499)
                      ++|++|+|.+||++|. +||+|.+++|++++++..+ +.++++|+++++.. ..+++.++   .+++.|++|++|..|++
T Consensus       433 ~~G~~v~~~eIE~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~-~~~~~~~~---~~~~~l~~~~~P~~i~~  506 (534)
T d1v25a_         433 SGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKP-TPEELNEH---LLKAGFAKWQLPDAYVF  506 (534)
T ss_dssp             ETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC-----------------------CCCTTTSCSBC--
T ss_pred             ECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEeCCCCC-CHHHHHHH---HHHhcCCcCCCccEEEE
Confidence            9999999999999996 8999999999999998888 89999999876543 23334333   25568999999999999


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHhhhh
Q 010854          469 VPEFPRTASNKLLRRVLRDQIKHELS  494 (499)
Q Consensus       469 ~~~iP~t~~GKv~r~~l~~~~~~~~~  494 (499)
                      +++||+|++|||+|++||++|++-.+
T Consensus       507 ~~~lP~t~~GKi~R~~lr~~~~~~~~  532 (534)
T d1v25a_         507 AEEIPRTSAGKFLKRALREQYKNYYG  532 (534)
T ss_dssp             ------------CCTTHHHHSTTSSC
T ss_pred             ECCCCCCCCccccHHHHHHHHHhhhC
Confidence            99999999999999999999987554

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.4e-59  Score=479.79  Aligned_cols=459  Identities=19%  Similarity=0.215  Sum_probs=361.7

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++.+++++........ ............
T Consensus        72 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  150 (536)
T d1mdba_          72 IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPT  150 (536)
T ss_dssp             CCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTT
T ss_pred             cCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhcccc
Confidence            7899999999999999999999999999999999999999999999999999999998753211000 000111111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ....+....       ......+.++..        ........+++|+++++|||||||.||+|++||+++...+....
T Consensus       151 ~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~  215 (536)
T d1mdba_         151 LKNIIVAGE-------AEEFLPLEDLHT--------EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV  215 (536)
T ss_dssp             CCCEEEESC-------CTTSEEGGGCCC--------CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHH
T ss_pred             ccceeeeec-------cccccchhhccc--------CCcCCCccCccchHHhhhcccccccceecccccccccccccccc
Confidence            111111100       111122222111        12223346789999999999999999999999999999999998


Q ss_pred             eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+++.++|++++..|++|.+++..  .+..+..|.+++..+ .+++..++..+++++++.+..+|..+..+........
T Consensus       216 ~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (536)
T d1mdba_         216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR  294 (536)
T ss_dssp             HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccccceeeccccccccccccccccC-CCCHHHHHHHHhhhccccccccchhhhhhhhhccccc
Confidence            8899999999999999999999764  444444456665554 6788999999999999999999999999888777677


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCC-CceEEEECCCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPY  318 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~i~d~~g~~~  318 (499)
                      ..+++++.+++||+.+++....++...+ +......|+.+|.+..+...........+++|.|++ +..+.+.+++|+++
T Consensus       295 ~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~  373 (536)
T d1mdba_         295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV  373 (536)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC
T ss_pred             cccCcceeEEEeccccccccccchhhcc-CceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCee
Confidence            7789999999999999999998888776 677888888888776666555555556788999975 56667777999999


Q ss_pred             CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854          319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV  397 (499)
Q Consensus       319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~  397 (499)
                      +.++  .|||++ ++..+.++  ..+...+...+      ..++||+|||++++++||+|++.||.||+||++|++|+|.
T Consensus       374 ~~~~--~Gel~v~g~~~~~gY--~~~~~~~~~~~------~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~  443 (536)
T d1mdba_         374 KPGE--TGHLLTRGPYTIRGY--YKAEEHNAASF------TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE  443 (536)
T ss_dssp             CTTC--CEEEEEECTTSCSSC--TTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred             cccc--cceeecCCCcccccc--ccccccccccc------cccCccccCccccccCCCceecCCCcceEEEECCEEECHH
Confidence            9999  599999 55544432  22222222222      4568999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCC
Q 010854          398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS  477 (499)
Q Consensus       398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~  477 (499)
                      +||++|. +||+|.+++|++.+++..+ ++++++|++.++ ..+.+++++++++   +.|+.|+.|..|+++++||+|++
T Consensus       444 ~IE~~l~-~~p~V~~a~vvg~~~~~~g-~~~~a~v~~~~~-~~~~~~l~~~l~~---~~l~~~~~P~~i~~v~~lP~t~~  517 (536)
T d1mdba_         444 EVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDE-APKAAELKAFLRE---RGLAAYKIPDRVEFVESFPQTGV  517 (536)
T ss_dssp             HHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSS-CCCHHHHHHHHHH---TTCCGGGSCSEEEECSSCCBCTT
T ss_pred             HHHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECCC-CCCHHHHHHHHHh---cCCCcCcCccEEEEECCCCcCCC
Confidence            9999996 9999999999999988877 899999998765 3466667666543   35999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhh
Q 010854          478 NKLLRRVLRDQIKHELS  494 (499)
Q Consensus       478 GKv~r~~l~~~~~~~~~  494 (499)
                      |||+|++|++++++++-
T Consensus       518 GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         518 GKVSKKALREAISEKLL  534 (536)
T ss_dssp             SCBCHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHh
Confidence            99999999999988764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.4e-59  Score=475.54  Aligned_cols=435  Identities=17%  Similarity=0.160  Sum_probs=350.6

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+++++|+++|++++|||+++|++++|+++.++++++.++++.++++++|++.....         .+......
T Consensus        70 v~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~  140 (514)
T d1amua_          70 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------LIHNIQFN  140 (514)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------HHTTSCCC
T ss_pred             cCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhh---------hhhhhccc
Confidence            789999999999999999999999999999999999999999999999999999999885421         11111111


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...........                 ..    ...........++++++++|||||||.||+++++|.++...+....
T Consensus       141 ~~~~~~~~~~~-----------------~~----~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  199 (514)
T d1amua_         141 GQVEIFEEDTI-----------------KI----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE  199 (514)
T ss_dssp             SEEEECCCSTT-----------------TT----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH
T ss_pred             ccccccccccc-----------------cc----cccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccc
Confidence            11111100000                 00    0111122334678999999999999999999999999999999998


Q ss_pred             eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854          162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG  239 (499)
Q Consensus       162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~  239 (499)
                      ..+....+++++...|++|.+++..++.+++.|+++++.+..  .+....++.+..+..+.+..+|......      ..
T Consensus       200 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  273 (514)
T d1amua_         200 NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DP  273 (514)
T ss_dssp             HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CT
T ss_pred             ccccccccccccceeccccccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cc
Confidence            889999999999999999999999988999999999987532  2346678899999999999999765532      34


Q ss_pred             ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC--CCCccccccccCCCceEEEECCCCCC
Q 010854          240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVP  317 (499)
Q Consensus       240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~d~~g~~  317 (499)
                      .++++++.++++|+.+++++..++..   +..+++.||+||++.+.......  ......+.+.+.++..+.+.|+++++
T Consensus       274 ~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  350 (514)
T d1amua_         274 ERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL  350 (514)
T ss_dssp             TTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCB
T ss_pred             cccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeeccccee
Confidence            56789999999999999998776654   56799999999998765433322  33345678899999999999999999


Q ss_pred             CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      ++.|+  .|||+| ++..+.+  ++.++..+...+...+..++++||+|||+|++|++|+|++.||.+|+|+++|++|+|
T Consensus       351 ~~~g~--~GEl~v~~~~~~~g--Y~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p  426 (514)
T d1amua_         351 KSVGE--AGELCIGGEGLARG--YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL  426 (514)
T ss_dssp             CCTTC--EEEEEEEETTCCCE--ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             cCCCC--eeEEEEccCccccc--ccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECH
Confidence            99999  599999 6555543  444555555566777778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. +||+|.+++|++.+++..+ ++++++|+++++.  +.++++++    ++++|+.|++|..|+++++||+|+
T Consensus       427 ~~IE~~l~-~~~~V~~~~V~~~~~~~~g-~~~~a~v~~~~~~--~~~~l~~~----~~~~l~~~~~p~~i~~v~~lP~t~  498 (514)
T d1amua_         427 EEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEKHI--PLEQLRQF----SSEELPTYMIPSYFIQLDKMPLTS  498 (514)
T ss_dssp             HHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESSCC--CHHHHHHH----HHHHSCGGGSCSEEEECSSCCBCT
T ss_pred             HHHHHHHH-hCCCccEEEEEEEECCCCC-EEEEEEEEcCCCC--CHHHHHHH----HHhhCCcccCceEEEEeCCCCCCC
Confidence            99999997 8999999999999998888 9999999987653  45555544    667899999999999999999999


Q ss_pred             CcHHHHHHHHH
Q 010854          477 SNKLLRRVLRD  487 (499)
Q Consensus       477 ~GKv~r~~l~~  487 (499)
                      +|||+|++||+
T Consensus       499 ~GKi~R~~L~~  509 (514)
T d1amua_         499 NGKIDRKQLPE  509 (514)
T ss_dssp             TSSBCGGGSCC
T ss_pred             CcChhHHhcCC
Confidence            99999999986

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.8e-56  Score=452.71  Aligned_cols=447  Identities=18%  Similarity=0.127  Sum_probs=347.2

Q ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854            2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL   81 (499)
Q Consensus         2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (499)
                      +++||+|+|+++|++++++++|||+++|++++|+++.++++++++++++++++++|++...       ............
T Consensus        51 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~  123 (503)
T d3cw9a1          51 LRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSG  123 (503)
T ss_dssp             CCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH-------HHHHHHHHTTCC
T ss_pred             cCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecch-------HHHHHHhhhccc
Confidence            6899999999999999999999999999999999999999999999999999999987642       111122222222


Q ss_pred             ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854           82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW  161 (499)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~  161 (499)
                      ...+.                 +.++..................+++++++++|||||||.||++.++|+++...+....
T Consensus       124 ~~~i~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~  186 (503)
T d3cw9a1         124 ARIIF-----------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS  186 (503)
T ss_dssp             CEEEE-----------------HHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred             ccccc-----------------chhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcc
Confidence            22222                 2222222221112223334456789999999999999999999999999988887766


Q ss_pred             eec--cCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC--
Q 010854          162 AHI--DLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--  236 (499)
Q Consensus       162 ~~~--~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--  236 (499)
                      ..+  .....++++..+|++|..+... .+.+...++.+++.+ ...+..+...+..++++++..+|+.+..+.....  
T Consensus       187 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  265 (503)
T d3cw9a1         187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA  265 (503)
T ss_dssp             HTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcccccccccccccccccccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccc
Confidence            544  4466688999999988888765 666666777777665 5688999999999999999999999887655422  


Q ss_pred             CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCC
Q 010854          237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV  316 (499)
Q Consensus       237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~  316 (499)
                      .....+++||.+++||++++++...++...+ +..+.+.||++|++........... .....+.+.+.....+.+..++
T Consensus       266 ~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  343 (503)
T d3cw9a1         266 GSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKTG-TEMAPGFFSEVRIVRIGGGVDE  343 (503)
T ss_dssp             CTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSSS-SEEBCCTTCCEEEECTTSCTTC
T ss_pred             cccccccceEEEEeccccccccccccccccc-cccccccccccccceeeeecccccc-ccccccccccceeeeeecccCc
Confidence            3345578999999999999999998888776 6779999999999876655444332 2233344445555556668888


Q ss_pred             CCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854          317 PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS  396 (499)
Q Consensus       317 ~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~  396 (499)
                      .++.|+.  |++.+............++..+...+       .++||+|||+|++++||+|+++||.||+||++|++|+|
T Consensus       344 ~~~~g~~--g~~~~~~~~~~~~~~~~~~~~t~~~~-------~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~  414 (503)
T d3cw9a1         344 IVANGEE--GELIVAASDSAFVGYLNQPQATAEKL-------QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP  414 (503)
T ss_dssp             BCCTTCC--EEEEEECCTTSCCCBTTCHHHHHHHE-------ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECH
T ss_pred             ccCCCcc--ccccccccccccccccCChhhhHHHh-------cCCceecccccccccCCeEEeCCCcCCeEEECCEEECH
Confidence            9999985  88777222222222333333333333       24799999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854          397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA  476 (499)
Q Consensus       397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~  476 (499)
                      .+||++|. .||+|.+++|++.+++..+ +.++++|+++.+...+.+++.++++   +++|+.|++|+.|+++++||+|+
T Consensus       415 ~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a~v~~~~~~~~~~~~l~~~~~---~~~l~~~~~P~~i~~v~~~P~t~  489 (503)
T d3cw9a1         415 SEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTFCR---SSELADFKRPKRYFILDQLPKNA  489 (503)
T ss_dssp             HHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHHHH---HSSSCGGGSCSEEEECSCCCBCT
T ss_pred             HHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEEEEEeCCCCCCCHHHHHHHHH---hcCCCCCCCccEEEEECCCCcCC
Confidence            99999996 8999999999999988887 8999999998887778777777654   35899999999999999999999


Q ss_pred             CcHHHHHHHHHHH
Q 010854          477 SNKLLRRVLRDQI  489 (499)
Q Consensus       477 ~GKv~r~~l~~~~  489 (499)
                      +|||+|++|++++
T Consensus       490 ~GKi~R~~L~~~~  502 (503)
T d3cw9a1         490 LNKVLRRQLVQQV  502 (503)
T ss_dssp             TSCBCHHHHHHHH
T ss_pred             CcCccHHHHHHhc
Confidence            9999999999875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=91.71  E-value=0.15  Score=48.60  Aligned_cols=102  Identities=10%  Similarity=-0.049  Sum_probs=75.1

Q ss_pred             EEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEe
Q 010854          146 IPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG  222 (499)
Q Consensus       146 v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~  222 (499)
                      ..+|+..+...+..+.   ...+++++|++...++-+. -.++.+++++..|+..+.+......+.+...++..++..++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF  124 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence            3578877766554444   3468999999988777653 23445889999999999998888889999999999999999


Q ss_pred             cchHHHHHHHccCCCCcccccceeEEEeec
Q 010854          223 TVPSLVKAWRNTNCLEGLDWTKIRSFASTG  252 (499)
Q Consensus       223 ~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G  252 (499)
                      .....+..+.+..    ..++.++.+++..
T Consensus       125 ~~~~~~~~~~~~~----~~~~~~~~~~~~~  150 (541)
T d1lcia_         125 VSKKGLQKILNVQ----KKLPIIQKIIIMD  150 (541)
T ss_dssp             ECGGGHHHHHHHH----HHCTTCCEEEETT
T ss_pred             eeccccccchhcc----ccccccceeeeec
Confidence            9998887765542    2234555555443

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=91.01  E-value=1.4  Score=41.47  Aligned_cols=103  Identities=15%  Similarity=-0.030  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .+|.+|++...+|.     .-.+|...+......+.   ...+++++|++...++.+.. ..+.+++++..|+..+.+++
T Consensus        24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~   97 (534)
T d1v25a_          24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANP   97 (534)
T ss_dssp             STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred             cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence            46788877665542     23467776655544443   45689999999888886543 34458999999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      ....+.+...++..++..++........+...
T Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~  129 (534)
T d1v25a_          98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI  129 (534)
T ss_dssp             TSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHhhccccccccchhhhhHHHH
Confidence            88889999999999999999888877766544

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=85.99  E-value=0.67  Score=45.10  Aligned_cols=96  Identities=15%  Similarity=0.027  Sum_probs=71.4

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .+|.+|++.. +..++.  ...+|++.+...+..+.   ...++++||++...+|.+..+ .+.+++++..|+..+.+.+
T Consensus        85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l~~  160 (643)
T d1pg4a_          85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG  160 (643)
T ss_dssp             HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred             CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEecCC
Confidence            4678887654 333333  34567777665554444   456899999999988876543 4458899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecch
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVP  225 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P  225 (499)
                      ...++.+...++..++..++...
T Consensus       161 ~~~~~~l~~~l~~~~~~~li~~~  183 (643)
T d1pg4a_         161 GFSPEAVAGCIIDSSSRLVITAD  183 (643)
T ss_dssp             TSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCHHHHHHHHHhcCCCEEEEcc
Confidence            88899999999999999988653

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=85.41  E-value=1.4  Score=41.00  Aligned_cols=115  Identities=9%  Similarity=-0.047  Sum_probs=84.0

Q ss_pred             cCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEee
Q 010854           99 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWP  175 (499)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~  175 (499)
                      +...++.+++.....           ..||.+|++..         +-.+|...+...+..+.   ...+++++|++...
T Consensus        20 ~~~~tl~~l~~~~a~-----------~~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~   79 (514)
T d1amua_          20 PRDKTIHQLFEEQVS-----------KRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIM   79 (514)
T ss_dssp             CTTCCHHHHHHHHHH-----------HCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCcHHHHHHHHHH-----------hCCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence            345566666654321           24688887641         13578877766555444   34689999999887


Q ss_pred             cCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854          176 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT  234 (499)
Q Consensus       176 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  234 (499)
                      ++-+..+ .+..++++..|+..+.+++....+.+...++..++..++..+.....+...
T Consensus        80 ~~n~~~~-v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~  137 (514)
T d1amua_          80 MEKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI  137 (514)
T ss_dssp             CCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS
T ss_pred             eCCCHHH-HHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh
Confidence            7776532 445889999999999998888889999999999999999999888776544

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=83.99  E-value=1.1  Score=41.59  Aligned_cols=93  Identities=10%  Similarity=-0.042  Sum_probs=68.9

Q ss_pred             CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854          126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG  202 (499)
Q Consensus       126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  202 (499)
                      .+|.+|++.-.+|       ..+|...+......+.   ...+++++|++...++-+. -..+..++++..|+..+.+++
T Consensus        15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpi~~   86 (503)
T d3cw9a1          15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLNP   86 (503)
T ss_dssp             STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred             CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCcEEEEeCC
Confidence            4677887665444       3467776655444443   4467899999988777543 233448899999999999988


Q ss_pred             CCChhHHHHHHHHhCCeEEecchH
Q 010854          203 SPLERSFGKFVQDAGVTVLGTVPS  226 (499)
Q Consensus       203 ~~~~~~~~~~i~~~~~t~l~~~P~  226 (499)
                      ...++.+...+++.++..++....
T Consensus        87 ~~~~~~i~~~l~~~~~~~~i~~~~  110 (503)
T d3cw9a1          87 RLKSAELAELIKRGEMTAAVIAVG  110 (503)
T ss_dssp             TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred             CCCHHHHHHHHHhcCCcEEEeecc
Confidence            888899999999999999876654