Citrus Sinensis ID: 010864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Secondary Structure (PSIPRED)
cccccccccHHccccccccccccccccccHHHHHHHHccccccHHHHHccccHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHccHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHccccccccccccccccHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHcHHcccccccccccccccccccccHHHccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHcEEEEEccccccccccccccHHHHHEEcHHHHHccccccccccccccccccccccccccEEEEEcccEEEEccccccccccccEEEEEcccccEEEEEccHHHHcHHHHHHHHHHHHHHccccHEHEEEEcc
Coil and Loop (DISEMBL)
msaaveepqfqngvastdepkpepaadpkveetketliqpppsteqtekqhpsteqtekqppsteqtlnpalrkdegnrTFTMRELLTELksegedsvtdasfsqgntphqLAEQNNAAMELINSvtgvdeegrSRQRILTFAAKRYANAIernpedydALYNWALVLQEsadnvsldstspskDALLEEACKKYDeatrlcptlHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAedtlrtggtvnprevspnelysQSAIYIAAAHALKPSYSVYSSALRLVRSmlplpylkagyltappagipvaphsdwkrsqfvlnheglqqasKNEQKQVTRslsgrtgdfspdrrairievpdivsvsacadltlppgaglcietihgpvflvADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Flexible Loop (DISEMBL)
msaaveepqfqngvastdepkpepaadpkveetketliqpppsteqtekqhpsteqtekqppsteqtlnpalrkdegnrTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSvtgvdeegrsRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEglqqaskneqkqvtrslsgrtgdfspdrraIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Low Complexity Region (SEG)
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered region (IsUnstruct)
*****************************************************************************************************************************************RILTFAAKRYANAIERNPEDYDALYNWALVLQE*****************LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK*********ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVL********************************AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGII**
Disordered Region (DISOPRED)
*****EE************************ETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNE*********************IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered Region (DISEMBL)
*******************************************************************LNPALRKDEGNRTFTMRELLTEL******************PHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD********PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA*********EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQ*****************TGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Disordered Region (DISPRO)
******************************************************************************************K**********SFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS********************DRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	498	2.2.26 [Sep-21-2011]
Q8CGY8	1046	UDP-N-acetylglucosamine--	yes	no	0.257	0.122	0.276	0.0007
P56558	1036	UDP-N-acetylglucosamine--	yes	no	0.257	0.123	0.276	0.0007
O15294	1046	UDP-N-acetylglucosamine--	yes	no	0.257	0.122	0.276	0.0007
P81436	1046	UDP-N-acetylglucosamine--	yes	no	0.257	0.122	0.276	0.0007
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	no	0.257	0.122	0.276	0.0008

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 336 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 381

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 429

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 430 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 463

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 439

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
255555737	505	conserved hypothetical protein [Ricinus	0.913	0.900	0.820	0.0
225426605	500	PREDICTED: uncharacterized protein LOC10	0.983	0.98	0.748	0.0
449456793	550	PREDICTED: uncharacterized protein LOC10	0.973	0.881	0.745	0.0
356535272	534	PREDICTED: uncharacterized protein LOC10	0.959	0.895	0.747	0.0
356535274	540	PREDICTED: uncharacterized protein LOC10	0.961	0.887	0.742	0.0
224075226	380	predicted protein [Populus trichocarpa]	0.759	0.994	0.897	0.0
356576620	528	PREDICTED: uncharacterized protein LOC10	0.977	0.922	0.709	0.0
365222856	569	Hop-interacting protein THI002 [Solanum	0.855	0.748	0.793	0.0
297742432	425	unnamed protein product [Vitis vinifera]	0.833	0.976	0.821	0.0
449528708	430	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.787	0.911	0.857	0.0

>gi|255555737|ref|XP_002518904.1| conserved hypothetical protein [Ricinus communis] gi|223541891|gb|EEF43437.1| conserved hypothetical protein [Ricinus communis]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/474 (82%), Positives = 418/474 (88%), Gaps = 19/474 (4%)

Query: 25  AADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMR 84
            ADPK EE KE  IQ   + E               P S +Q   P LRKDEG+RTFTMR
Sbjct: 51  GADPKAEERKEAPIQLKEAYE---------------PQSDDQNARPELRKDEGSRTFTMR 95

Query: 85  ELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAA 144
           ELL+ELKSE  D VT    SQ +TPH    QNNAAMELINSVTG DEEGRSRQRILTFAA
Sbjct: 96  ELLSELKSEEADDVTTPQ-SQQSTPHL---QNNAAMELINSVTGADEEGRSRQRILTFAA 151

Query: 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 204
           +RYA+AIERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPT
Sbjct: 152 RRYASAIERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPT 211

Query: 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
           LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL
Sbjct: 212 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 271

Query: 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324
           SAIVPAREKQTIV+TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG +NP++V
Sbjct: 272 SAIVPAREKQTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGAINPKDV 331

Query: 325 SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHS 384
           SPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLPYLK GYLTAPPAG  +APHS
Sbjct: 332 SPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKVGYLTAPPAGKSIAPHS 391

Query: 385 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT 444
           DWK+SQFVLNHEGLQQ SK +QKQ+ +SLSGRT   + D++AI+IEVPDIVSVSAC+DLT
Sbjct: 392 DWKKSQFVLNHEGLQQVSKLDQKQLPQSLSGRTDVTNSDKKAIKIEVPDIVSVSACSDLT 451

Query: 445 LPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 498
           LPPGAGLC++T+HGPVFLVADSWE+LDGWLDAIR VYTIYARGK++VLAGI+TG
Sbjct: 452 LPPGAGLCVDTVHGPVFLVADSWESLDGWLDAIRSVYTIYARGKSEVLAGIVTG 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426605|ref|XP_002272828.1| PREDICTED: uncharacterized protein LOC100232876 [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/508 (74%), Positives = 417/508 (82%), Gaps = 18/508 (3%)

Query: 1   MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQ 60
           M++  +E + QNG     E  PE   +PKV    E   +     EQT  Q    + T   
Sbjct: 1   MASPSDESELQNGGG---EAAPESVPEPKVGVNTEAEAKVDGDPEQTVIQSNDADNT--- 54

Query: 61  PPSTEQTLNPALRKDEGNRTFTMRELLTELKS--------EGEDSVTDASFSQGNTPHQL 112
            PS EQ+  P L+KDEG++TFTMRELL+ELK         EGE       +S  +T  Q 
Sbjct: 55  -PSAEQSAKPELQKDEGSQTFTMRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQH 113

Query: 113 -AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171
             + N+ AM+LINSVTGVDEEGRSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQES
Sbjct: 114 HIDHNDPAMDLINSVTGVDEEGRSRQRILAFAARRYASAIERNSEDYDALYNWALVLQES 173

Query: 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231
           ADNV  DS+SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE
Sbjct: 174 ADNVGPDSSSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 233

Query: 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291
           LWKQAT+NYEKAVQLNWNSPQALNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQ
Sbjct: 234 LWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQ 293

Query: 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351
           FDFHRAIYNLGTVLYGLAEDTLR G  V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY 
Sbjct: 294 FDFHRAIYNLGTVLYGLAEDTLRAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYR 352

Query: 352 SALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTR 411
           SALRLVRSMLPLPYLK GYL APPAG PVAPH DWKR+QFVLNHEGLQQ +K EQKQ  +
Sbjct: 353 SALRLVRSMLPLPYLKVGYLAAPPAGNPVAPHGDWKRTQFVLNHEGLQQLNKVEQKQTPQ 412

Query: 412 SLSGRTGD-FSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEAL 470
           +LSGR+GD    D+ AI+++VPDIVSVSACADLTLP GAGLCI+TIHGPVFLVADSWE+L
Sbjct: 413 TLSGRSGDAVHIDKAAIKVDVPDIVSVSACADLTLPAGAGLCIDTIHGPVFLVADSWESL 472

Query: 471 DGWLDAIRLVYTIYARGKADVLAGIITG 498
           DGW DAIRLVYTI+ARGK+DVLAGIITG
Sbjct: 473 DGWFDAIRLVYTIFARGKSDVLAGIITG 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456793|ref|XP_004146133.1| PREDICTED: uncharacterized protein LOC101213929 [Cucumis sativus]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/506 (74%), Positives = 411/506 (81%), Gaps = 21/506 (4%)

Query: 6   EEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTE 65
           E     NGV  ++   P       +     T +  P   E  E   PS   TE       
Sbjct: 53  ESESVSNGVPDSEPESPRKQLSESIHLHVVTGVTDPSVEEHKETSTPSNGNTEN------ 106

Query: 66  QTLNPALRKDEGNRTFTMRELLTELKSE-GEDSVTDASFS--QGNT--------PHQ-LA 113
             L PALRKDEG+RTFTMRELL  LK E G DS+ ++     +GN+        PHQ  +
Sbjct: 107 --LQPALRKDEGSRTFTMRELLNGLKGEDGSDSLNESEGERPEGNSGYSLNQDSPHQPYS 164

Query: 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173
           EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWALVLQESAD
Sbjct: 165 EQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESAD 224

Query: 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233
           NVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW
Sbjct: 225 NVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 284

Query: 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293
           KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFRAAIQLQFD
Sbjct: 285 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFRAAIQLQFD 344

Query: 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353
           FHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP+YSVYSSA
Sbjct: 345 FHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKPNYSVYSSA 404

Query: 354 LRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS-KNEQKQVTRS 412
           LRLVRSMLPLPYLK GYLTAPP G P+APHSDWKRSQF LNH+ LQ+ +   EQ Q + S
Sbjct: 405 LRLVRSMLPLPYLKVGYLTAPPVGRPLAPHSDWKRSQFFLNHDVLQKLNIGGEQIQTSPS 464

Query: 413 LSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDG 472
           + GR+G      R I++E+PDIVSVSACADLTLPPGAGLCI+TIHGP+FLVADSW+ LDG
Sbjct: 465 ILGRSGSTLNGDRTIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPIFLVADSWDTLDG 524

Query: 473 WLDAIRLVYTIYARGKADVLAGIITG 498
           WLDAIRLVYTIYARGK +VLAGIITG
Sbjct: 525 WLDAIRLVYTIYARGKNEVLAGIITG 550

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535272|ref|XP_003536172.1| PREDICTED: uncharacterized protein LOC100809275 isoform 1 [Glycine max]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/488 (74%), Positives = 407/488 (83%), Gaps = 10/488 (2%)

Query: 19  EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
           EP P+P ++P   E  +  ++P   +E     +   ++ E    S E   NP+    LRK
Sbjct: 49  EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107

Query: 75  DEGNRTFTMRELLTELKSEGEDSVTDAS--FSQGNTPHQLAEQNNAAMELINSVTGVDEE 132
           DEG+RTFTMRELL  LK+  E    DA+  +S     HQ A+QNNAAM+LINSV GVD+E
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDANSPYSPEQQQHQ-ADQNNAAMDLINSVVGVDDE 166

Query: 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192
           GRSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV  DSTSPSKDALLEEAC
Sbjct: 167 GRSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSKDALLEEAC 226

Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
           KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAVQLNWNSPQ
Sbjct: 227 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAVQLNWNSPQ 286

Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
           ALNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT
Sbjct: 287 ALNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 346

Query: 313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLT 372
           LRTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP+LK GYLT
Sbjct: 347 LRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLKVGYLT 406

Query: 373 APPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSPDRRAIRIE 430
           APP G  +APH+DWK S F L+HE LQQ  + E KQV  ++LSGR+ D  S D++ I+++
Sbjct: 407 APPVGASIAPHNDWKGSDFFLDHEKLQQIPRGEHKQVPPQNLSGRSLDAVSGDKKTIKVD 466

Query: 431 VPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKAD 490
           + DI SVSACADLTLPPGAGLCI+T +G V+LVADSWE+LDGWLDAIRLVYTIY RGK+D
Sbjct: 467 IADITSVSACADLTLPPGAGLCIDTSYGSVYLVADSWESLDGWLDAIRLVYTIYVRGKSD 526

Query: 491 VLAGIITG 498
           VLAGIITG
Sbjct: 527 VLAGIITG 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535274|ref|XP_003536173.1| PREDICTED: uncharacterized protein LOC100809275 isoform 2 [Glycine max]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/493 (74%), Positives = 410/493 (83%), Gaps = 14/493 (2%)

Query: 19  EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
           EP P+P ++P   E  +  ++P   +E     +   ++ E    S E   NP+    LRK
Sbjct: 49  EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107

Query: 75  DEGNRTFTMRELLTELKS----EGEDSVTDASFSQGNTPHQL---AEQNNAAMELINSVT 127
           DEG+RTFTMRELL  LK+    E ED+ +  S S+  +P Q    A+QNNAAM+LINSV 
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDANSPYSVSKIFSPEQQQHQADQNNAAMDLINSVV 167

Query: 128 GVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
           GVD+EGRSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV  DSTSPSKDAL
Sbjct: 168 GVDDEGRSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSKDAL 227

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAVQLN
Sbjct: 228 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAVQLN 287

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
           WNSPQALNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG
Sbjct: 288 WNSPQALNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 347

Query: 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLK 367
           LAEDTLRTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP+LK
Sbjct: 348 LAEDTLRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLK 407

Query: 368 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSPDRR 425
            GYLTAPP G  +APH+DWK S F L+HE LQQ  + E KQV  ++LSGR+ D  S D++
Sbjct: 408 VGYLTAPPVGASIAPHNDWKGSDFFLDHEKLQQIPRGEHKQVPPQNLSGRSLDAVSGDKK 467

Query: 426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYA 485
            I++++ DI SVSACADLTLPPGAGLCI+T +G V+LVADSWE+LDGWLDAIRLVYTIY 
Sbjct: 468 TIKVDIADITSVSACADLTLPPGAGLCIDTSYGSVYLVADSWESLDGWLDAIRLVYTIYV 527

Query: 486 RGKADVLAGIITG 498
           RGK+DVLAGIITG
Sbjct: 528 RGKSDVLAGIITG 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075226|ref|XP_002304578.1| predicted protein [Populus trichocarpa] gi|222842010|gb|EEE79557.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/379 (89%), Positives = 364/379 (96%), Gaps = 1/379 (0%)

Query: 120 MELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179
           MELI+SVT  DEEGRSRQR+LTFAA+RYA+A+ERNP+DYDALYNWALVLQESADNVSLDS
Sbjct: 1   MELIDSVTSTDEEGRSRQRVLTFAARRYASALERNPDDYDALYNWALVLQESADNVSLDS 60

Query: 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239
           TSPSKD LLEEACKKYDEATRLCPTL+DAFYNWAIAISDRAKMRGRTKEAEELWKQATKN
Sbjct: 61  TSPSKDDLLEEACKKYDEATRLCPTLNDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 120

Query: 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299
           YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY
Sbjct: 121 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 180

Query: 300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359
           NLGTVLYGLAEDTLRTGGT N ++VSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRS
Sbjct: 181 NLGTVLYGLAEDTLRTGGTPNAKDVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRS 240

Query: 360 MLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGD 419
           MLPLPYLK GYLTAP AG P+APH+DWKRS+FVLNHEGLQQ SK+EQKQV RSLSGR  D
Sbjct: 241 MLPLPYLKVGYLTAPQAGKPIAPHNDWKRSEFVLNHEGLQQISKSEQKQVRRSLSGRPSD 300

Query: 420 FS-PDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR 478
            S  D++AI++EVPDIVSVSACADLTLPPGAGLCI+TIHGP+FLVADSWE+LDGWLDAIR
Sbjct: 301 VSNSDKKAIKVEVPDIVSVSACADLTLPPGAGLCIDTIHGPLFLVADSWESLDGWLDAIR 360

Query: 479 LVYTIYARGKADVLAGIIT 497
           LVYTIYARGK++VLAGI+T
Sbjct: 361 LVYTIYARGKSEVLAGIVT 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576620|ref|XP_003556428.1| PREDICTED: uncharacterized protein LOC100786164 [Glycine max]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/531 (70%), Positives = 419/531 (78%), Gaps = 44/531 (8%)

Query: 7   EPQFQNGVASTDEPKPE----------PAADPKVEETKETLIQPPPS-----TEQTEKQH 51
           EP+ QNG     EP+PE          P  +PK + T E    P P      TEQT+ Q 
Sbjct: 3   EPESQNGHEQDPEPQPETEPVPTEQTQPQLEPKSKSTPEPEPNPQPESEPVPTEQTQAQL 62

Query: 52  PSTEQTEKQPPSTEQTL----------------NPALRKDEGNRTFTMRELLTELKSEGE 95
                +E  P   +  L                 P LRKDEG+RTFTMRELL  LK++ E
Sbjct: 63  EPKSGSEADPAVNDADLRETTIHSNETYANPSPTPQLRKDEGSRTFTMRELLNGLKNDSE 122

Query: 96  DSVTDASFSQGNTPHQ------LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYAN 149
               D     GN+P+        A+QNNAAM+LINSV GVDEEGRSRQRILTFAA+RYA 
Sbjct: 123 PERED-----GNSPYSPEQQQQQADQNNAAMDLINSVVGVDEEGRSRQRILTFAARRYAT 177

Query: 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209
           AIERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPTLHDAF
Sbjct: 178 AIERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 237

Query: 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 269
           YNWAIAISDRAKMRGRTKEAEELWK AT+NYEKAVQLNWNSPQALNNWGLALQELS IVP
Sbjct: 238 YNWAIAISDRAKMRGRTKEAEELWKLATRNYEKAVQLNWNSPQALNNWGLALQELSGIVP 297

Query: 270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL 329
           AREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+V+ +EVSPNEL
Sbjct: 298 AREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSVSAQEVSPNEL 357

Query: 330 YSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS 389
           YSQSAIYIAAAHALKP+YSVYSSALRLVRSMLPLP+LK GYLTAPP G  +APH+DWKRS
Sbjct: 358 YSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPHLKVGYLTAPPVGASIAPHNDWKRS 417

Query: 390 QFVLNHEGLQQASKNEQKQV-TRSLSGRTGD-FSPDRRAIRIEVPDIVSVSACADLTLPP 447
           +F+L+HE LQQ  + E KQV  ++LSGR  D  S D++ I++++ DI+SVSACADLTLPP
Sbjct: 418 EFLLDHEKLQQIPRGEYKQVPPQNLSGRLVDAVSGDKKTIKVDIADIISVSACADLTLPP 477

Query: 448 GAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 498
           GAGLCI+T +G V+LVADSWE+LDGWLDA+RLVYTIY RGK+DVLAGIITG
Sbjct: 478 GAGLCIDTSYGSVYLVADSWESLDGWLDALRLVYTIYVRGKSDVLAGIITG 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222856|gb|AEW69780.1| Hop-interacting protein THI002 [Solanum lycopersicum]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/431 (79%), Positives = 387/431 (89%), Gaps = 5/431 (1%)

Query: 72  LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPH-----QLAEQNNAAMELINSV 126
           L+KDEG+RTFTMRELL ELK+   +  ++A   + +TPH     Q   ++NAA++LINSV
Sbjct: 138 LKKDEGSRTFTMRELLDELKNGDANEDSEAERRESDTPHSQQSSQQHTESNAALDLINSV 197

Query: 127 TGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186
           TG DEEGRSRQRILT+AA+RYA A+ERN EDYDALYNWALVLQESADNVS DSTSPSKD+
Sbjct: 198 TGADEEGRSRQRILTYAARRYATALERNQEDYDALYNWALVLQESADNVSPDSTSPSKDS 257

Query: 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246
           LLE+ACKKY+EATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELWKQATKNYEKAVQL
Sbjct: 258 LLEQACKKYEEATRLCPTLNDAYYNWAIAISDRAKIRGRTKEAEELWKQATKNYEKAVQL 317

Query: 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306
           NWNSPQALNNWGLALQELSAIVPAREK TIV+TAISKFRAAIQLQFDFHRAIYNLGTVLY
Sbjct: 318 NWNSPQALNNWGLALQELSAIVPAREKLTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLY 377

Query: 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYL 366
           GLAED  RTGG V  + +SPNELYSQSAIYIAAAHALKP+YSVY+SAL+LVRSMLPLPYL
Sbjct: 378 GLAEDMSRTGGAVTAKGISPNELYSQSAIYIAAAHALKPNYSVYTSALKLVRSMLPLPYL 437

Query: 367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRA 426
           K GYLT+PPAG P+APHSDWKRSQFVLN EGLQQ SK +Q+ ++ SLS  + D SP R+A
Sbjct: 438 KVGYLTSPPAGNPLAPHSDWKRSQFVLNQEGLQQISKVDQRHMSSSLSSNSADMSPSRQA 497

Query: 427 IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR 486
           I+++VPDI+SVSACADLTLPPGAGL I+TIHGPV+++ADSWE+LD WLDAIRLVYTI AR
Sbjct: 498 IKVDVPDIISVSACADLTLPPGAGLRIDTIHGPVYMIADSWESLDWWLDAIRLVYTIGAR 557

Query: 487 GKADVLAGIIT 497
           GK+DVLAGIIT
Sbjct: 558 GKSDVLAGIIT 568

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742432|emb|CBI34581.3| unnamed protein product [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/426 (82%), Positives = 376/426 (88%), Gaps = 11/426 (2%)

Query: 83  MRELLTELKS--------EGEDSVTDASFSQGNTPHQL-AEQNNAAMELINSVTGVDEEG 133
           MRELL+ELK         EGE       +S  +T  Q   + N+ AM+LINSVTGVDEEG
Sbjct: 1   MRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQHHIDHNDPAMDLINSVTGVDEEG 60

Query: 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193
           RSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQESADNV  DS+SPSKDALLEEACK
Sbjct: 61  RSRQRILAFAARRYASAIERNSEDYDALYNWALVLQESADNVGPDSSSPSKDALLEEACK 120

Query: 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253
           KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT+NYEKAVQLNWNSPQA
Sbjct: 121 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQA 180

Query: 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
           LNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL
Sbjct: 181 LNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 240

Query: 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTA 373
           R G  V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY SALRLVRSMLPLPYLK GYL A
Sbjct: 241 RAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYRSALRLVRSMLPLPYLKVGYLAA 299

Query: 374 PPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGD-FSPDRRAIRIEVP 432
           PPAG PVAPH DWKR+QFVLNHEGLQQ +K EQKQ  ++LSGR+GD    D+ AI+++VP
Sbjct: 300 PPAGNPVAPHGDWKRTQFVLNHEGLQQLNKVEQKQTPQTLSGRSGDAVHIDKAAIKVDVP 359

Query: 433 DIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVL 492
           DIVSVSACADLTLP GAGLCI+TIHGPVFLVADSWE+LDGW DAIRLVYTI+ARGK+DVL
Sbjct: 360 DIVSVSACADLTLPAGAGLCIDTIHGPVFLVADSWESLDGWFDAIRLVYTIFARGKSDVL 419

Query: 493 AGIITG 498
           AGIITG
Sbjct: 420 AGIITG 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528708|ref|XP_004171345.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213929 [Cucumis sativus]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/394 (85%), Positives = 363/394 (92%), Gaps = 2/394 (0%)

Query: 107 NTPHQ-LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165
           ++PHQ  +EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWA
Sbjct: 37  DSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWA 96

Query: 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225
           LVLQESADNVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGR
Sbjct: 97  LVLQESADNVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGR 156

Query: 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285
           TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFR
Sbjct: 157 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFR 216

Query: 286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345
           AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP
Sbjct: 217 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKP 276

Query: 346 SYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS-KN 404
           +YSVYSSALRLVRSMLPLPYLK GYLTAPP G P+APHSDWKRSQF LNH+ LQ+ +   
Sbjct: 277 NYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGRPLAPHSDWKRSQFFLNHDVLQKLNIGG 336

Query: 405 EQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVA 464
           EQ Q + S+ GR+G      R I++E+PDIVSVSACADLTLPPGAGLCI+TIHGP+FLVA
Sbjct: 337 EQIQTSPSILGRSGSTLNGDRTIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPIFLVA 396

Query: 465 DSWEALDGWLDAIRLVYTIYARGKADVLAGIITG 498
           DSW+ LDGWLDAIRLVYTIYARGK  VLAGIITG
Sbjct: 397 DSWDTLDGWLDAIRLVYTIYARGKNVVLAGIITG 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
TAIR|locus:2165725	565	AT5G41950 [Arabidopsis thalian	0.961	0.847	0.691	5.3e-175
UNIPROTKB|Q8EKN7	571	SO_0055 "Tetratricopeptide rep	0.441	0.385	0.264	1.2e-11
TIGR_CMR|SO_0055	571	SO_0055 "conserved domain prot	0.441	0.385	0.264	1.2e-11
DICTYBASE|DDB_G0278895	1313	cldA "Clu domain-containing pr	0.682	0.258	0.24	5.3e-06

TAIR|locus:2165725 AT5G41950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1700 (603.5 bits), Expect = 5.3e-175, P = 5.3e-175
 Identities = 337/487 (69%), Positives = 394/487 (80%)

Query:    19 EPKPEPA-ADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQ-TLNPALRKDE 76
             + KPE A ++ K EE +  +    P     +     +E+   +    EQ +    L+KD+
Sbjct:    80 DAKPEEAQSEVKPEEVQSVVTDTKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDD 139

Query:    77 -GNRTFTMRELLTELKSEGEDSVTDASFS--QGNTPHQLAEQNNAAMELINSVTGVDEEG 133
              GN+TFTMRELL+ELKSE  D    +S S     +  Q AE NN AM+LIN +   DEEG
Sbjct:   140 DGNKTFTMRELLSELKSEEGDGTPHSSASPFSRESASQPAE-NNPAMDLINRIQVNDEEG 198

Query:   134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193
             RSRQR+L FAA++YA+AIERNP+D+DALYNWAL+LQESADNVS DS SPSKD LLEEACK
Sbjct:   199 RSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLLEEACK 258

Query:   194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253
             KYDEATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELW+QA  NYEKAVQLNWNS QA
Sbjct:   259 KYDEATRLCPTLYDAYYNWAIAISDRAKIRGRTKEAEELWEQAADNYEKAVQLNWNSSQA 318

Query:   254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
             LNNWGL LQELS IVPAREK+ +VRTAISKFRAAI+LQFDFHRAIYNLGTVLYGLAEDTL
Sbjct:   319 LNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLGTVLYGLAEDTL 378

Query:   314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTA 373
             RTGG+ N +++ P ELYSQSAIYIAAAH+LKPSYSVYSSALRLVRSMLPLP+LK GYLTA
Sbjct:   379 RTGGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSALRLVRSMLPLPHLKVGYLTA 438

Query:   374 PPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSP--DRRAIRIEV 431
             PP G  +APHSDWKR++F LNHE L Q  K E +++ R+LSG+    S   +R+ +++ +
Sbjct:   439 PPVGNSLAPHSDWKRTEFELNHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNI 498

Query:   432 PDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADV 491
              +IVSV+ CADLTLPPGAGLCI+TIHGPVFLVADSWE+LDGWLDAIRLVYTIYARGK+DV
Sbjct:   499 TEIVSVTPCADLTLPPGAGLCIDTIHGPVFLVADSWESLDGWLDAIRLVYTIYARGKSDV 558

Query:   492 LAGIITG 498
             LAGIITG
Sbjct:   559 LAGIITG 565

GO:0005737 "cytoplasm" evidence=ISM

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8EKN7 SO_0055 "Tetratricopeptide repeat-containing protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 190 (71.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 65/246 (26%), Positives = 120/246 (48%)

Query:    72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG--- 128
             LRK +  R    R     L  +G+ +   A  ++G    +L E+  A +       G   
Sbjct:   302 LRKSQEEREQRARPNFELLLMKGKYNELIA-LAKGT---ELDEEEKAVVAWAEIALGDLL 357

Query:   129 VDEEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
             V++  +++Q ++   + ++Y  A+   P+ ++AL NW   L + A           + AL
Sbjct:   358 VEQAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPAL 410

Query:   188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
              E++ +KY  A  + P +HDA +NW   +SD A++    K+   L++Q+ + YE A+ + 
Sbjct:   411 FEQSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIK 466

Query:   248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
              +  +A++NWG AL +L+ +   ++K  +   + SK    IQ +   ++  YNL   LY 
Sbjct:   467 PDDHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYS 519

Query:   308 LAEDTL 313
             L  D L
Sbjct:   520 LLHDDL 525

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0055 SO_0055 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 190 (71.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 65/246 (26%), Positives = 120/246 (48%)

Query:    72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG--- 128
             LRK +  R    R     L  +G+ +   A  ++G    +L E+  A +       G   
Sbjct:   302 LRKSQEEREQRARPNFELLLMKGKYNELIA-LAKGT---ELDEEEKAVVAWAEIALGDLL 357

Query:   129 VDEEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
             V++  +++Q ++   + ++Y  A+   P+ ++AL NW   L + A           + AL
Sbjct:   358 VEQAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPAL 410

Query:   188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
              E++ +KY  A  + P +HDA +NW   +SD A++    K+   L++Q+ + YE A+ + 
Sbjct:   411 FEQSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIK 466

Query:   248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
              +  +A++NWG AL +L+ +   ++K  +   + SK    IQ +   ++  YNL   LY 
Sbjct:   467 PDDHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYS 519

Query:   308 LAEDTL 313
             L  D L
Sbjct:   520 LLHDDL 525

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278895 cldA "Clu domain-containing protein A" [Dictyostelium discoideum (taxid:44689)]

 Score = 143 (55.4 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 90/375 (24%), Positives = 152/375 (40%)

Query:    55 EQTEKQP-PSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLA 113
             +Q ++QP P  +Q  N +      N T           +   D   D S    N  +   
Sbjct:   931 QQQQQQPQPQPQQPTNTSTTTSTSNNTSNN----INNNNNNPDGSNDGSDDNINNNNNNN 986

Query:   114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173
               NN      N++T       S   +   AA+++  AI+  P+DY+ L +W ++L   A 
Sbjct:   987 NNNNNNNNNNNNLTN------SADNLFIQAAEKFKVAIQSKPDDYEILTHWGILLSMRAR 1040

Query:   174 NVS----LDSTSPSK-DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228
              +S    + +   ++ + L + A +K+  A +L    H A +NWA A+   A +R  T  
Sbjct:  1041 LISNKTYIKAHGKAEIEKLYQSAIEKFQLAVKLKRNHHYALFNWAEALRGWAAIRPGTDI 1100

Query:   229 AEELWKQATKNYEKA--VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286
             A EL K+A    ++A   +  W   Q L   G+A   L +  PA     I+R + S+  +
Sbjct:  1101 AHELEKKAKMKLKEAGVFEKRWFF-QTLETQGVA--SLLSGAPAGG--FIIRNSNSRPGS 1155

Query:   287 AI-QLQFDFHRAIYN--LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343
              +     D HR I +  + +  +G   + L       PR VS +   S S+   ++ +  
Sbjct:  1156 FVFSYLSDPHRKILHSIIKSSSHGYHVENLP------PRRVSSSSSSSSSSSSNSSNNIP 1209

Query:   344 KPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQAS 402
             K   S   +   L+ S L       G   +P      +P      S   LN E    +AS
Sbjct:  1210 KSGSS--QNLNELLASSLNSSGSSGGSNISPTNSSTTSPTISRSSSVNNLNQELKFNEAS 1267

Query:   403 KNEQKQVTRSLSGRT 417
                  + + SLSG++
Sbjct:  1268 TTVPTRNSTSLSGQS 1282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      498       498   0.00084  119 3  11 23  0.46    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  292 KB (2151 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  56.77u 0.10s 56.87t   Elapsed:  00:00:03
  Total cpu time:  56.77u 0.10s 56.87t   Elapsed:  00:00:03
  Start:  Mon May 20 22:50:01 2013   End:  Mon May 20 22:50:04 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	498
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 18/102 (17%)

Query: 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196
                 A + Y  A+E +P++ DA YN A    +                  EEA + Y+
Sbjct: 13  LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------------YEEALEDYE 58

Query: 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238
           +A  L P    A+YN  +A        G+ +EA E +++A +
Sbjct: 59  KALELDPDNAKAYYNLGLAY----YKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280
              G        + +A + YEKA++L+ ++  A  N   A  +L               A
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEA 53

Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +  +  A++L  D  +A YNLG   Y L
Sbjct: 54  LEDYEKALELDPDNAKAYYNLGLAYYKL 81

Length = 100

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 429 IEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAI 477
           I++ D ++V +  + T    A   + T     +L+ADS +  + W+ AI
Sbjct: 51  IDLSDCLTVKSAEEATNKEFA-FEVSTPERTFYLIADSEKEKEEWISAI 98

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 24/92 (26%)

Query: 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215
           ++ +AL N    L +  D               +EA + Y++A  L P   +A+YN A+A
Sbjct: 1   DNAEALKNLGNALFKLGD--------------YDEAIEAYEKALELDPDNAEAYYNLALA 46

Query: 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
                K+    +EA E       + EKA++L+
Sbjct: 47  ---YLKLGKDYEEALE-------DLEKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
           ++  K  G        + +A + YEKA++L+ ++ +A  N  LA  +L            
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEE------ 56

Query: 277 VRTAISKFRAAIQL 290
              A+     A++L
Sbjct: 57  ---ALEDLEKALEL 67

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	498
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
KOG1126	638	consensus DNA-binding cell division cycle control	99.78
PRK11189	296	lipoprotein NlpI; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.75
KOG1125	579	consensus TPR repeat-containing protein [General f	99.75
PRK12370	553	invasion protein regulator; Provisional	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
PRK15359	144	type III secretion system chaperone protein SscB;	99.73
PRK12370	553	invasion protein regulator; Provisional	99.73
PLN02789	320	farnesyltranstransferase	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.67
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.66
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.64
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.63
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.62
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.6
PRK11189	296	lipoprotein NlpI; Provisional	99.6
PLN02789	320	farnesyltranstransferase	99.59
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.54
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
KOG0553	304	consensus TPR repeat-containing protein [General f	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.5
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
KOG0553	304	consensus TPR repeat-containing protein [General f	99.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.48
KOG1129	478	consensus TPR repeat-containing protein [General f	99.47
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.45
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.45
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.44
KOG1129	478	consensus TPR repeat-containing protein [General f	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.42
KOG2076	895	consensus RNA polymerase III transcription factor	99.41
KOG1125	579	consensus TPR repeat-containing protein [General f	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.36
KOG2003	840	consensus TPR repeat-containing protein [General f	99.36
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.36
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.35
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.32
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.32
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.31
PRK14574	822	hmsH outer membrane protein; Provisional	99.31
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.3
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.29
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.28
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.28
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.19
PRK11906	458	transcriptional regulator; Provisional	99.17
KOG2003	840	consensus TPR repeat-containing protein [General f	99.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.14
PRK11906	458	transcriptional regulator; Provisional	99.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.12
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.12
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.11
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.1
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.1
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.09
PRK14574	822	hmsH outer membrane protein; Provisional	99.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.07
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.06
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.06
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.06
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.06
KOG2076	895	consensus RNA polymerase III transcription factor	99.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.05
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.04
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.04
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.02
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.0
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.99
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.99
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.97
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.94
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.9
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.88
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.83
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.81
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.81
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.81
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.76
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.76
PRK10803	263	tol-pal system protein YbgF; Provisional	98.75
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.73
PRK15331	165	chaperone protein SicA; Provisional	98.71
PRK10803	263	tol-pal system protein YbgF; Provisional	98.68
PRK15331	165	chaperone protein SicA; Provisional	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.65
KOG4234	271	consensus TPR repeat-containing protein [General f	98.63
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.62
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.62
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.6
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
PF12688	120	TPR_5: Tetratrico peptide repeat	98.57
PLN03218	1060	maturation of RBCL 1; Provisional	98.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.55
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.53
KOG4234	271	consensus TPR repeat-containing protein [General f	98.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.51
KOG4555	175	consensus TPR repeat-containing protein [Function	98.5
PLN03218	1060	maturation of RBCL 1; Provisional	98.5
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.47
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.45
PF13371	73	TPR_9: Tetratricopeptide repeat	98.44
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.42
KOG4555	175	consensus TPR repeat-containing protein [Function	98.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.39
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.36
PLN03077	857	Protein ECB2; Provisional	98.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.26
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.23
PRK04841	903	transcriptional regulator MalT; Provisional	98.21
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.2
PLN03077	857	Protein ECB2; Provisional	98.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.19
PRK04841	903	transcriptional regulator MalT; Provisional	98.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.17
PF13512	142	TPR_18: Tetratricopeptide repeat	98.15
PF13512	142	TPR_18: Tetratricopeptide repeat	98.13
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.1
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.07
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.97
PF13428	44	TPR_14: Tetratricopeptide repeat	97.97
PF13428	44	TPR_14: Tetratricopeptide repeat	97.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.96
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.95
PF13431	34	TPR_17: Tetratricopeptide repeat	97.95
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.93
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.92
PF13431	34	TPR_17: Tetratricopeptide repeat	97.89
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.87
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.75
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.74
KOG1586	288	consensus Protein required for fusion of vesicles	97.74
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.73
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.73
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.67
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.66
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	97.65
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.64
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.62
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.61
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.6
KOG2471	696	consensus TPR repeat-containing protein [General f	97.58
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.57
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.5
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.49
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.39
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.34
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.29
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.27
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.06
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.05
KOG1585	308	consensus Protein required for fusion of vesicles	97.05
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.05
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.03
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.94
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.89
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.78
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.78
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	96.77
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	96.77
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.75
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.73
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	96.72
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	96.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.62
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	96.59
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.58
KOG1586	288	consensus Protein required for fusion of vesicles	96.58
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.54
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.45
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.44
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.42
KOG2471	696	consensus TPR repeat-containing protein [General f	96.41
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.4
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	96.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.32
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.31
PRK10941	269	hypothetical protein; Provisional	96.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.23
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.23
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.17
KOG1310	758	consensus WD40 repeat protein [General function pr	96.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.12
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	96.11
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.07
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.07
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	96.05
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.98
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.96
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	95.96
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	95.94
KOG1585	308	consensus Protein required for fusion of vesicles	95.93
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.78
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.63
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.57
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.5
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.47
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.45
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.39
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.36
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.35
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	95.31
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.3
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	95.26
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.26
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.23
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.2
PRK10941	269	hypothetical protein; Provisional	95.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.06
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.04
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	95.04
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.98
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.97
KOG1310	758	consensus WD40 repeat protein [General function pr	94.86
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.8
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.77
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	94.58
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.45
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.34
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.12
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.0
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.82
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.81
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.73
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.68
KOG3364	149	consensus Membrane protein involved in organellar	93.45
KOG1258	577	consensus mRNA processing protein [RNA processing	93.45
COG2912	269	Uncharacterized conserved protein [Function unknow	93.45
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	93.37
KOG3364	149	consensus Membrane protein involved in organellar	93.32
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.16
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.06
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	92.6
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.41
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.29
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.29
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.06
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.02
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.96
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.32
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	91.29
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	90.8
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.77
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	90.76
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.73
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.66
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.61
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.41
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.19
COG4941	415	Predicted RNA polymerase sigma factor containing a	90.13
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.09
COG5191	435	Uncharacterized conserved protein, contains HAT (H	89.78
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	89.38
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.95
KOG3783	546	consensus Uncharacterized conserved protein [Funct	88.92
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.8
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.74
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.5
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.37
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	88.31
KOG1258	577	consensus mRNA processing protein [RNA processing	88.28
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.19
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.98
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.45
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	87.41
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	87.08
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.07
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.06
COG2912	269	Uncharacterized conserved protein [Function unknow	86.45
KOG4014	248	consensus Uncharacterized conserved protein (conta	86.24
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	86.12
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	85.8
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	85.26
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.14
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.0
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	84.93
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	84.91
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.87
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	84.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.37
KOG4814	872	consensus Uncharacterized conserved protein [Funct	84.37
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.14
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	84.05
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.75
PTZ00267	478	NIMA-related protein kinase; Provisional	83.6
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	83.57
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	83.55
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.09
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.01
COG3947	361	Response regulator containing CheY-like receiver a	82.94
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	82.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.66
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	82.13
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.86
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	81.77
cd02656	75	MIT MIT: domain contained within Microtubule Inter	81.44
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	81.38
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	81.35
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.39

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=2.8e-25  Score=225.53  Aligned_cols=190  Identities=25%  Similarity=0.282  Sum_probs=153.6

Q ss_pred             hhhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC-----
Q 010864          111 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV-----  175 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-----  175 (498)
                      ...|...+|...|.+++...          +-.+..+|+.-.||..|++|+.++|.++++|+|||.+|.+.+.+.     
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~  274 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC  274 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence            34567777777777776655          333456777888888888888888888888888888887777631     


Q ss_pred             -------CCC--------CCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          176 -------SLD--------STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       176 -------~~~--------~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                             .|.        ++.+-..|+++-||..|++||++.|+..++|+|||.++.+    .|+..||+       .+|
T Consensus       275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~-------~cY  343 (966)
T KOG4626|consen  275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAV-------DCY  343 (966)
T ss_pred             HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHH-------HHH
Confidence                   111        1123344668888888888888888888888888888888    88888888       799


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------------------HhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          241 EKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------REKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      .+||.+.|+++++++|||.+|.++|.+++|                        +.++|++++|+.+|++||+++|.++.
T Consensus       344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd  423 (966)
T KOG4626|consen  344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD  423 (966)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence            999999999999999999999999999887                        56799999999999999999999999


Q ss_pred             HHHHHHHHHHHcchh
Q 010864          297 AIYNLGTVLYGLAED  311 (498)
Q Consensus       297 a~~~Lg~~~~~~g~~  311 (498)
                      ++.|+|.+|..+|+.
T Consensus       424 a~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHhcchHHHHhhhH
Confidence            999999999999983

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=5.8e-23  Score=208.82  Aligned_cols=195  Identities=26%  Similarity=0.323  Sum_probs=152.6

Q ss_pred             hhhhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864          110 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  179 (498)
Q Consensus       110 ~q~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~  179 (498)
                      +...+.++.|+..|.+++...          +-.|+.+|.++-||..|+++|+++|+.+++++|+|+++...|+      
T Consensus       262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~------  335 (966)
T KOG4626|consen  262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS------  335 (966)
T ss_pred             HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc------
Confidence            334567777777777776655          2346677888888888888888888888888888888888888      


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------
Q 010864          180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------------------------  234 (498)
Q Consensus       180 ~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-------------------------  234 (498)
                              ..+|..+|.+||.++|+++++.+|||.+|..    +|++++|..+|.                         
T Consensus       336 --------V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn  403 (966)
T KOG4626|consen  336 --------VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN  403 (966)
T ss_pred             --------hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence                    8888888888888888888888888888888    888888874331                         


Q ss_pred             --HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864          235 --QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  312 (498)
Q Consensus       235 --~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~  312 (498)
                        +|+.+|+.|+.++|..++++.|+|..|.++|+.          ..|+.+|.+||.++|.+++++.|||.+|...|+  
T Consensus       404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v----------~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn--  471 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV----------SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN--  471 (966)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH----------HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC--
Confidence              233555555555555555555555555555555          999999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                                       ..+|+..|+.+++++||.+...
T Consensus       472 -----------------i~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  472 -----------------IPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             -----------------cHHHHHHHHHHHccCCCCchhh
Confidence                             8999999999999999998443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=5.6e-18  Score=185.67  Aligned_cols=178  Identities=15%  Similarity=0.144  Sum_probs=118.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +..+|++++|+..|+++++++|++..+|+.+|.++..+|+              +++|+..|+++++++|++..+++++|
T Consensus       341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD--------------PDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3445555666666666655555555555555555555555              55555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHH---------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWK---------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~---------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .++..    +|++++|+..|+                           +|+..|+++++.+|+++.+++++|.++..+|+
T Consensus       407 ~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       407 QLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             HHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            55555    555555554332                           13367777888888888888888888888888


Q ss_pred             cchHH-------------------------------hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010864          267 IVPAR-------------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT  315 (498)
Q Consensus       267 ~~~a~-------------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~  315 (498)
                      +++|.                               ...+++++|+.+|+++++++|++..++..+|.++..+|+     
T Consensus       483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~-----  557 (615)
T TIGR00990       483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD-----  557 (615)
T ss_pred             HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-----
Confidence            87660                               114677778888888888888877777788888888887     


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                                    +.+|+.+|++++++.+...
T Consensus       558 --------------~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       558 --------------VDEALKLFERAAELARTEG  576 (615)
T ss_pred             --------------HHHHHHHHHHHHHHhccHH
Confidence                          7888888888888777544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=5.9e-18  Score=185.49  Aligned_cols=169  Identities=15%  Similarity=0.164  Sum_probs=134.0

Q ss_pred             hhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      ..+.|++|+.+|++++..   .|....+|+.+|.++..+|+              +++|+..|+++++++|++..+|+++
T Consensus       306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~--------------~~eA~~~~~kal~l~P~~~~~~~~l  371 (615)
T TIGR00990       306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK--------------HLEALADLSKSIELDPRVTQSYIKR  371 (615)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            368899999999999987   48888999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------------------
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----------------------  270 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----------------------  270 (498)
                      |.++..    +|++++|+       ..|+++++++|+++.+++++|.++..+|++++|                      
T Consensus       372 a~~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       372 ASMNLE----LGDPDKAE-------EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             HHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            999999    99999999       567777777777777777788777777777332                      


Q ss_pred             --HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          271 --REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       271 --~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                        +.+.|++++|+..|++++++.|+++.+++++|.++..+|+                   +.+|+.+|.+++.++|++.
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-------------------FDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHhcCCccc
Confidence              1122333555555555555555555555555555555555                   8999999999999998753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=3.7e-18  Score=176.51  Aligned_cols=175  Identities=20%  Similarity=0.214  Sum_probs=160.8

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      +.+++.+++++.||.+|++|+++||+++.+|..+|.-+.....              |+.|..+|++||.++|.+..|||
T Consensus       428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHH
Confidence            3456778999999999999999999999999999999999998              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .||.+|.+    +++++.|+       -+|++|++++|.+......+|.++.++|+.          ++|+..|++|+.+
T Consensus       494 GlG~vy~K----qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  494 GLGTVYLK----QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHL  552 (638)
T ss_pred             hhhhheec----cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhc
Confidence            99999999    99999999       799999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  359 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~  359 (498)
                      +|.++-..|+.|.+++.+++                   |.+|...+++..++-|++......++.+-.
T Consensus       553 d~kn~l~~~~~~~il~~~~~-------------------~~eal~~LEeLk~~vP~es~v~~llgki~k  602 (638)
T KOG1126|consen  553 DPKNPLCKYHRASILFSLGR-------------------YVEALQELEELKELVPQESSVFALLGKIYK  602 (638)
T ss_pred             CCCCchhHHHHHHHHHhhcc-------------------hHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            99999999999999999999                   899999999999999999965555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=5.7e-17  Score=161.50  Aligned_cols=179  Identities=18%  Similarity=0.188  Sum_probs=142.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++++|+++.+|+++|.++...|+              +++|+..|+++++++|++..+|+++|
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHh---------------------
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------------  272 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~---------------------  272 (498)
                      .++..    .|++++|+       ..|+++++++|+++... .+..++...+++++|..                     
T Consensus       140 ~~l~~----~g~~~eA~-------~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~  207 (296)
T PRK11189        140 IALYY----GGRYELAQ-------DDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEF  207 (296)
T ss_pred             HHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence            99999    99999999       68888888999887421 11222334455544410                     


Q ss_pred             hhhh------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC-
Q 010864          273 KQTI------VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP-  345 (498)
Q Consensus       273 ~~~~------~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-  345 (498)
                      ..|+      ++.++..+++++++.|+...+|++||.++..+|+                   +.+|+.+|++|++++| 
T Consensus       208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-------------------~~~A~~~~~~Al~~~~~  268 (296)
T PRK11189        208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-------------------LDEAAALFKLALANNVY  268 (296)
T ss_pred             HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCCc
Confidence            1122      2222233344446677888899999999999999                   9999999999999997 


Q ss_pred             CHHHHHHHHHHH
Q 010864          346 SYSVYSSALRLV  357 (498)
Q Consensus       346 ~~~~~~~~l~~~  357 (498)
                      ++..++.++--+
T Consensus       269 ~~~e~~~~~~e~  280 (296)
T PRK11189        269 NFVEHRYALLEL  280 (296)
T ss_pred             hHHHHHHHHHHH
Confidence            555666654433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.75  E-value=1.5e-16  Score=179.56  Aligned_cols=182  Identities=15%  Similarity=0.067  Sum_probs=166.0

Q ss_pred             hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      ..+++++|...+.++....         +..+...|++++|+.+|+++++.+|++...+..++..+..+|+         
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr---------  591 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ---------  591 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC---------
Confidence            4577888888888765542         2235668999999999999999999998888888877778899         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           +++|+..|+++++++|+ ..+++++|.++.+    +|++++|+       ..|+++++++|+++.+++++|.++.
T Consensus       592 -----~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL~  654 (987)
T PRK09782        592 -----PELALNDLTRSLNIAPS-ANAYVARATIYRQ----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYALW  654 (987)
T ss_pred             -----HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 99999999999999997 9999999999999    99999999       6999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      ..|++          ++|+..|+++++++|+++.+++++|.++..+|+                   +..|..+|+++++
T Consensus       655 ~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------------~~eA~~~l~~Al~  705 (987)
T PRK09782        655 DSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------------MAATQHYARLVID  705 (987)
T ss_pred             HCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHh
Confidence            99999          999999999999999999999999999999999                   8999999999999


Q ss_pred             cCCCHH
Q 010864          343 LKPSYS  348 (498)
Q Consensus       343 l~p~~~  348 (498)
                      ++|++.
T Consensus       706 l~P~~a  711 (987)
T PRK09782        706 DIDNQA  711 (987)
T ss_pred             cCCCCc
Confidence            999986

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.1e-16  Score=159.21  Aligned_cols=156  Identities=20%  Similarity=0.166  Sum_probs=148.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ++..++.++|+.+|++|+++||....+|..+|.-|.+++.              -..|+..|++|++++|.+..+||.||
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWYGLG  405 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWYGLG  405 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence            4556889999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+|.-    ++...=|+       -+|++|+++.|++...|.-||.||.++++.          ++|+.+|.+|+.....
T Consensus       406 QaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  406 QAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcccc
Confidence            99999    88888888       799999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      +..+++.||.+|.++++                   +.+|+.+|.+-++.
T Consensus       465 e~~~l~~LakLye~l~d-------------------~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKD-------------------LNEAAQYYEKYVEV  495 (559)
T ss_pred             chHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHH
Confidence            99999999999999998                   89999999998873

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=2.3e-17  Score=168.31  Aligned_cols=167  Identities=23%  Similarity=0.308  Sum_probs=155.3

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+++.|.+.+|+-+|+.++..+|+++++|..||.+..+.++              =..||.+++++++++|++..++..|
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaL  359 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMAL  359 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence            35778999999999999999999999999999999999999              8999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHH-----------------------------------------------------------
Q 010864          213 AIAISDRAKMRGRTKEAEELW-----------------------------------------------------------  233 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~-----------------------------------------------------------  233 (498)
                      |+.|..    .|.-.+|.+++                                                           
T Consensus       360 AVSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~  435 (579)
T KOG1125|consen  360 AVSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG  435 (579)
T ss_pred             HHHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence            999988    66666666543                                                           


Q ss_pred             -----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          234 -----------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       234 -----------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                                 ++|+.+|+.||+.+|++...||.||-.+..-.+.          .+||..|++|+++.|.+.+++||||
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLG  505 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhh
Confidence                       5588999999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          303 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      .+|.++|.                   |.+|+.+|-.||.+.+.
T Consensus       506 IS~mNlG~-------------------ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  506 ISCMNLGA-------------------YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhh-------------------HHHHHHHHHHHHHhhhc
Confidence            99999998                   99999999999998776

>PRK12370 invasion protein regulator; Provisional

Probab=99.74  E-value=2.7e-16  Score=169.86  Aligned_cols=159  Identities=13%  Similarity=-0.009  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR  219 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~  219 (498)
                      +++|+..++++++++|+++.+|..+|.++...|+              +++|+..|++|++++|+++.+|+++|.++.. 
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-  384 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM-  384 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            4555555555555555555555555555555555              5555555555555555555555555555555 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc-CCCHHHH
Q 010864          220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAI  298 (498)
Q Consensus       220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-P~~~~a~  298 (498)
                         .|++++|+       ..|+++++++|.++.+++.++.++...|++          ++|+..++++++.. |+++.++
T Consensus       385 ---~G~~~eAi-------~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~  444 (553)
T PRK12370        385 ---AGQLEEAL-------QTINECLKLDPTRAAAGITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILL  444 (553)
T ss_pred             ---CCCHHHHH-------HHHHHHHhcCCCChhhHHHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHH
Confidence               55555555       355555555555554444444444445555          66666666665553 5555556


Q ss_pred             HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       299 ~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                      .++|.+|..+|+                   +++|...+.+.....|+...+..
T Consensus       445 ~~la~~l~~~G~-------------------~~eA~~~~~~~~~~~~~~~~~~~  479 (553)
T PRK12370        445 SMQVMFLSLKGK-------------------HELARKLTKEISTQEITGLIAVN  479 (553)
T ss_pred             HHHHHHHHhCCC-------------------HHHHHHHHHHhhhccchhHHHHH
Confidence            666666666665                   66777777776666666554333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=3.4e-16  Score=172.09  Aligned_cols=200  Identities=14%  Similarity=0.060  Sum_probs=138.8

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..++++.|...+.+++...          +..+...|++++|+..|+++++++|+++.++..+|.++...|+        
T Consensus        88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~--------  159 (656)
T PRK15174         88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK--------  159 (656)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------
Confidence            4677778888887777665          2345567888888888888888888888888888888888888        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------------------
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW----------------------------  233 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~----------------------------  233 (498)
                            +++|+..|++++..+|++..++.+++. +..    .|++++|+..+                            
T Consensus       160 ------~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~  228 (656)
T PRK15174        160 ------ELQAISLARTQAQEVPPRGDMIATCLS-FLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY  228 (656)
T ss_pred             ------hHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence                  888888888888888888777766543 555    77777776543                            


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch----H------------------------HhhhhhHHHHHHHHH
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP----A------------------------REKQTIVRTAISKFR  285 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~----a------------------------~~~~~~~~~Ai~~~~  285 (498)
                      ++|+..|+++++++|+++.+++++|.+|...|++++    |                        +...|++++|+..|+
T Consensus       229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            336677888888889999999999999999998843    1                        122344455555555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       286 ~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      ++++++|+++.++.++|.+|..+|+                   +.+|...|.+++..+|++..
T Consensus       309 ~al~l~P~~~~a~~~La~~l~~~G~-------------------~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        309 QSLATHPDLPYVRAMYARALRQVGQ-------------------YTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCccchH
Confidence            5555555555555555555555554                   66666666777766666653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.73  E-value=4.8e-16  Score=170.92  Aligned_cols=183  Identities=11%  Similarity=0.024  Sum_probs=167.4

Q ss_pred             hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  180 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~  180 (498)
                      ..+++++|+..+.+++...           ...+...|++++|+..|+++++.+|+++.+++++|.+|..+|+       
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-------  261 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-------  261 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------
Confidence            4577888888887765543           2345678999999999999999999999999999999999999       


Q ss_pred             CCchhhhHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          181 SPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       181 ~~~~~~~~~~----A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                             +++    |+..|+++++++|++..++.++|.++..    +|++++|+       ..|+++++++|+++.++.+
T Consensus       262 -------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        262 -------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             -------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHH
Confidence                   875    8999999999999999999999999999    99999999       6899999999999999999


Q ss_pred             HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHH
Q 010864          257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY  336 (498)
Q Consensus       257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~  336 (498)
                      +|.+|...|++          ++|+..|+++++.+|++...+..+|.++...|+                   +++|..+
T Consensus       324 La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~-------------------~deA~~~  374 (656)
T PRK15174        324 YARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGK-------------------TSEAESV  374 (656)
T ss_pred             HHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC-------------------HHHHHHH
Confidence            99999999999          999999999999999999888889999999999                   8999999


Q ss_pred             HHHHHhcCCCHH
Q 010864          337 IAAAHALKPSYS  348 (498)
Q Consensus       337 ~~~Al~l~p~~~  348 (498)
                      |+++++.+|++.
T Consensus       375 l~~al~~~P~~~  386 (656)
T PRK15174        375 FEHYIQARASHL  386 (656)
T ss_pred             HHHHHHhChhhc
Confidence            999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=6.1e-16  Score=141.98  Aligned_cols=143  Identities=24%  Similarity=0.324  Sum_probs=134.8

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      ++...|++..|..-+++||+.||++..+|..++.+|..+|.              .+.|.+.|++|+.++|++.++++|.
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhhhh
Confidence            36889999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      |..++.    +|++++|.       ..|++|+..-  |....++-|+|.|-.+.|+.          +.|..+|++++++
T Consensus       110 G~FLC~----qg~~~eA~-------q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL~~  168 (250)
T COG3063         110 GAFLCA----QGRPEEAM-------QQFERALADPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRALEL  168 (250)
T ss_pred             hHHHHh----CCChHHHH-------HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHHHh
Confidence            999999    99999999       5777777532  44678999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcch
Q 010864          291 QFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +|+++.....++..++..|+
T Consensus       169 dp~~~~~~l~~a~~~~~~~~  188 (250)
T COG3063         169 DPQFPPALLELARLHYKAGD  188 (250)
T ss_pred             CcCCChHHHHHHHHHHhccc
Confidence            99999999999999999998

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.73  E-value=8.7e-17  Score=142.77  Aligned_cols=128  Identities=15%  Similarity=0.097  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010864          144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       144 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~  223 (498)
                      ..+|+++++++|++   ++.+|.++...|+              +++|+..|++++.++|.+..+|+++|.++..    +
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~   71 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----L   71 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----H
Confidence            46899999999986   6789999999999              9999999999999999999999999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      |++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+..|++++++.|+++..+.++|.
T Consensus        72 g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~~  134 (144)
T PRK15359         72 KEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQN  134 (144)
T ss_pred             hhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999       799999999999999999999999999999          99999999999999999999999999


Q ss_pred             HHHHcc
Q 010864          304 VLYGLA  309 (498)
Q Consensus       304 ~~~~~g  309 (498)
                      +...+.
T Consensus       135 ~~~~l~  140 (144)
T PRK15359        135 AQIMVD  140 (144)
T ss_pred             HHHHHH
Confidence            887654

>PRK12370 invasion protein regulator; Provisional

Probab=99.73  E-value=3.1e-16  Score=169.50  Aligned_cols=176  Identities=13%  Similarity=-0.006  Sum_probs=154.5

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+.+++|+.+|+++++++|+++.+|..+|.+|..++...     .....+.+++|+..+++|++++|+++.+|..+|.++
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g-----~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~  348 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-----IFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN  348 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC-----CcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            356789999999999999999999999999998776511     112345689999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      ..    .|++++|+       ..|+++++++|+++.+++++|.++...|++          ++|+..|+++++++|+++.
T Consensus       349 ~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----------~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        349 TI----HSEYIVGS-------LLFKQANLLSPISADIKYYYGWNLFMAGQL----------EEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCChh
Confidence            99    99999999       799999999999999999999999999999          9999999999999999998


Q ss_pred             HHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 010864          297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYSSALRLV  357 (498)
Q Consensus       297 a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~~~~~l~~~  357 (498)
                      +++.++.+++..|+                   +++|..++++++... |+++.+...+..+
T Consensus       408 ~~~~~~~~~~~~g~-------------------~eeA~~~~~~~l~~~~p~~~~~~~~la~~  450 (553)
T PRK12370        408 AGITKLWITYYHTG-------------------IDDAIRLGDELRSQHLQDNPILLSMQVMF  450 (553)
T ss_pred             hHHHHHHHHHhccC-------------------HHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence            88888888888888                   899999999999875 7777554444443

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=5.6e-16  Score=154.87  Aligned_cols=191  Identities=14%  Similarity=0.057  Sum_probs=165.0

Q ss_pred             hhhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864          111 QLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEE  190 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~  190 (498)
                      ...+++.+++.++..++..       .+++++|+..+.++|+++|++..+|+.+|.++..++.             .+++
T Consensus        31 ~y~~~~~~a~~~~ra~l~~-------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------------~l~e   90 (320)
T PLN02789         31 AYTPEFREAMDYFRAVYAS-------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------------DLEE   90 (320)
T ss_pred             eeCHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------------hHHH
Confidence            4568899999999988766       7889999999999999999999999999999999983             2899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      ++..++++++.+|++..+|++++.++..    +|+..     +.+++.+++++++.+|+|..+|+++|.++..+|++   
T Consensus        91 eL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~-----~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~---  158 (320)
T PLN02789         91 ELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDA-----ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW---  158 (320)
T ss_pred             HHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchh-----hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH---
Confidence            9999999999999999999999999988    88631     12234799999999999999999999999999999   


Q ss_pred             HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                             ++|+.++.++|+++|++..+|+++|.++..++..        .    ......+..+.|+.+++.++|+|...
T Consensus       159 -------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l--------~----~~~~~~e~el~y~~~aI~~~P~N~Sa  219 (320)
T PLN02789        159 -------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL--------G----GLEAMRDSELKYTIDAILANPRNESP  219 (320)
T ss_pred             -------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--------c----cccccHHHHHHHHHHHHHhCCCCcCH
Confidence                   9999999999999999999999999999877430        0    01112467888999999999999843


Q ss_pred             HH
Q 010864          351 SS  352 (498)
Q Consensus       351 ~~  352 (498)
                      ..
T Consensus       220 W~  221 (320)
T PLN02789        220 WR  221 (320)
T ss_pred             HH
Confidence            33

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=2e-15  Score=142.46  Aligned_cols=164  Identities=21%  Similarity=0.296  Sum_probs=151.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..++..+|.++...|+              +++|++.|+++++++|++..+++++|
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~  106 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNNYG  106 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            6778999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      .++..    .|++++|++       .|++++..  .+.....+.++|.++...|++          ++|+..|+++++.+
T Consensus       107 ~~~~~----~g~~~~A~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~  165 (234)
T TIGR02521       107 TFLCQ----QGKYEQAMQ-------QFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQID  165 (234)
T ss_pred             HHHHH----cccHHHHHH-------HHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence            99999    999999995       55666553  356778999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                      |++..++..+|.++...|+                   +.+|..++++++.+.|.+....
T Consensus       166 ~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~  206 (234)
T TIGR02521       166 PQRPESLLELAELYYLRGQ-------------------YKDARAYLERYQQTYNQTAESL  206 (234)
T ss_pred             cCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999999                   8999999999999988766443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.6e-16  Score=164.54  Aligned_cols=184  Identities=18%  Similarity=0.213  Sum_probs=172.6

Q ss_pred             hhhcHHHHHHHHHHhhhcch----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..++++.|+..|.+++.++.          .-+....+||.|..+|++||..+|.+..|||.+|.+|.++++        
T Consensus       433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------  504 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------  504 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------
Confidence            35789999999999999883          123557899999999999999999999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            ++.|.-.|++|+.++|.+......+|.++..    +|+.++|+       ..|++|+.+||.++-..++.|.++
T Consensus       505 ------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  505 ------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------QLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             ------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------HHHHHHHhcCCCCchhHHHHHHHH
Confidence                  9999999999999999999999999999999    99999999       799999999999999999999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ..++++          ++|+..+++.-++-|+...+++.+|.+|..+|+                   ...|+..|.-|.
T Consensus       568 ~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~-------------------~~~Al~~f~~A~  618 (638)
T KOG1126|consen  568 FSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGN-------------------TDLALLHFSWAL  618 (638)
T ss_pred             Hhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc-------------------chHHHHhhHHHh
Confidence            999999          999999999999999999999999999999998                   788999999999


Q ss_pred             hcCCCHHH
Q 010864          342 ALKPSYSV  349 (498)
Q Consensus       342 ~l~p~~~~  349 (498)
                      .++|.-..
T Consensus       619 ~ldpkg~~  626 (638)
T KOG1126|consen  619 DLDPKGAQ  626 (638)
T ss_pred             cCCCccch
Confidence            99997664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=1.3e-15  Score=171.88  Aligned_cols=182  Identities=12%  Similarity=0.031  Sum_probs=167.7

Q ss_pred             hhhcHHHHHHHHHHhhhcch----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..++..+|..++.+++....          ......|++++|+..|+++++++|+ +.+++++|.++.++|+        
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~--------  624 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN--------  624 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence            45788889999888776641          1112349999999999999999997 9999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.++
T Consensus       625 ------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        625 ------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  9999999999999999999999999999999    99999999       699999999999999999999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ..+|++          ++|+.+|+++++++|+++.+....|.++....+                   +..+...|.++.
T Consensus       688 ~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~-------------------~~~a~~~~~r~~  738 (987)
T PRK09782        688 QRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFN-------------------FRRLHEEVGRRW  738 (987)
T ss_pred             HHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH-------------------HHHHHHHHHHHh
Confidence            999999          999999999999999999999999999998887                   889999999999


Q ss_pred             hcCCCHH
Q 010864          342 ALKPSYS  348 (498)
Q Consensus       342 ~l~p~~~  348 (498)
                      .++|+..
T Consensus       739 ~~~~~~~  745 (987)
T PRK09782        739 TFSFDSS  745 (987)
T ss_pred             hcCccch
Confidence            9999877

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.67  E-value=8.2e-15  Score=171.18  Aligned_cols=190  Identities=19%  Similarity=0.133  Sum_probs=151.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc------------CCCCCC---------------------
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------------VSLDST---------------------  180 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~------------~~~~~~---------------------  180 (498)
                      +...|++++|+..|+++++.+|+++++++.+|.+|..+|+.            ..++..                     
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            44556666666666666666666666666666666666653            111110                     


Q ss_pred             -CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864          181 -SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  259 (498)
Q Consensus       181 -~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~  259 (498)
                       .....+++++|+..|+++++++|++..+++++|.++..    +|++++|+       ..|+++++++|++..++.+++.
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~-------~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAE-------RYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHH
Confidence             01134569999999999999999999999999999999    99999999       6999999999999999999999


Q ss_pred             HHHHhcCcchH---------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          260 ALQELSAIVPA---------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  306 (498)
Q Consensus       260 ~l~~~g~~~~a---------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~  306 (498)
                      +|.. +++++|                                 +...|++++|+..|+++++++|+++.+++++|.+|.
T Consensus       428 l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        428 LYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR  506 (1157)
T ss_pred             HHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8753 334433                                 224688999999999999999999999999999999


Q ss_pred             HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       307 ~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      .+|+                   +.+|...|+++++++|++.....++
T Consensus       507 ~~G~-------------------~~~A~~~l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        507 QAGQ-------------------RSQADALMRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             HcCC-------------------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999                   8999999999999999988544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.66  E-value=3e-14  Score=134.42  Aligned_cols=177  Identities=18%  Similarity=0.154  Sum_probs=153.4

Q ss_pred             hcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          114 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      +++++|...+.+++...          +..+..+|++++|+..|+++++.+|.+..+++++|.++...|+          
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~----------  114 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK----------  114 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc----------
Confidence            45555666555554433          2345678999999999999999999999999999999999999          


Q ss_pred             hhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~--p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                          +++|+..|++++...  +.....++++|.++..    .|++++|.       ..|+++++.+|++..++..+|.++
T Consensus       115 ----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       115 ----YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             ----HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCChHHHHHHHHHH
Confidence                999999999999864  5567889999999999    99999999       688999999999999999999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ...|++          ++|+.++++++++.|+++..+..++.++...|+                   ...+..+.+.+.
T Consensus       180 ~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~  230 (234)
T TIGR02521       180 YLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGD-------------------VAAAQRYGAQLQ  230 (234)
T ss_pred             HHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHH
Confidence            999999          999999999999999999999999999999998                   677777766665


Q ss_pred             hcC
Q 010864          342 ALK  344 (498)
Q Consensus       342 ~l~  344 (498)
                      ...
T Consensus       231 ~~~  233 (234)
T TIGR02521       231 KLF  233 (234)
T ss_pred             hhC
Confidence            543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=7.2e-15  Score=149.57  Aligned_cols=189  Identities=17%  Similarity=0.133  Sum_probs=145.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC-----------CCC---------CCchhhhHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL-----------DST---------SPSKDALLEEACKK  194 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~-----------~~~---------~~~~~~~~~~A~~~  194 (498)
                      ...|++.+|.++|.++..+||....+|...|..|...+..-+.           +|+         .+....+++-|.+.
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            3456677777777777777777777777777766666552100           111         11223458888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       195 ~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                      |.+|+.+.|+++-.+..+|.+...    .+.|.+|...|+.++...+..+.-.+.-...++|||.++.+++++       
T Consensus       403 f~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-------  471 (611)
T KOG1173|consen  403 FKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-------  471 (611)
T ss_pred             HHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-------
Confidence            888888888888888888888888    888888887666666444443333344567899999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                         ++||.+|+++|.+.|.++.++-.+|.+|..+|+                   ++.|+++|.++|.++|++......|
T Consensus       472 ---~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-------------------ld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  472 ---EEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-------------------LDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             ---HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-------------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence               999999999999999999999999999999999                   9999999999999999998666555


Q ss_pred             HH
Q 010864          355 RL  356 (498)
Q Consensus       355 ~~  356 (498)
                      ..
T Consensus       530 ~~  531 (611)
T KOG1173|consen  530 KL  531 (611)
T ss_pred             HH
Confidence            43

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=2.3e-15  Score=133.59  Aligned_cols=125  Identities=16%  Similarity=0.068  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHH
Q 010864          192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  271 (498)
Q Consensus       192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~  271 (498)
                      ...|+++++++|++   ++++|.++..    .|++++|+       ..|++++.++|.+..+++++|.++..+|++    
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----   74 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQ----EGDYSRAV-------IDFSWLVMAQPWSWRAHIALAGTWMMLKEY----   74 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence            56899999999986   6788999999    99999999       699999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                            ++|+..|+++++++|+++.+++++|.++..+|+                   +.+|+.+|.+++++.|++..+.
T Consensus        75 ------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-------------------~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         75 ------TTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-------------------PGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHH
Confidence                  999999999999999999999999999999999                   9999999999999999999877


Q ss_pred             HHHHHHHc
Q 010864          352 SALRLVRS  359 (498)
Q Consensus       352 ~~l~~~~~  359 (498)
                      .....+..
T Consensus       130 ~~~~~~~~  137 (144)
T PRK15359        130 EIRQNAQI  137 (144)
T ss_pred             HHHHHHHH
Confidence            77666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.65  E-value=4.8e-15  Score=136.15  Aligned_cols=138  Identities=24%  Similarity=0.263  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      ..+...||.-|++.|+              +..|.+.+++||+.+|++..+|..++.+|..    .|..+.|.       
T Consensus        35 a~arlqLal~YL~~gd--------------~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~-------   89 (250)
T COG3063          35 AKARLQLALGYLQQGD--------------YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLAD-------   89 (250)
T ss_pred             HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHH-------
Confidence            3578899999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhc
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRT  315 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~~~~~~  315 (498)
                      +.|++|+.++|++.+++||.|..++.+|++          ++|...|++|+..  -+.-+..+-|+|.|-.+.|+     
T Consensus        90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-----  154 (250)
T COG3063          90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-----  154 (250)
T ss_pred             HHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----
Confidence            699999999999999999999999999999          9999999999985  34557899999999999999     


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                                    ...|.++|+++++++|+++.
T Consensus       155 --------------~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063         155 --------------FDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             --------------chhHHHHHHHHHHhCcCCCh
Confidence                          89999999999999999983

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.64  E-value=2.7e-14  Score=166.94  Aligned_cols=189  Identities=16%  Similarity=0.142  Sum_probs=144.4

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-------
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN-------  174 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------  174 (498)
                      ..+++++|+..+.+++...          +..+..+|++++|+.+|+++++++|++..++..++.+|...+..       
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~  442 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA  442 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3467888888888887765          33466789999999999999999999999998888877432100       


Q ss_pred             -CCC--------------------CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          175 -VSL--------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       175 -~~~--------------------~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                       +..                    .+..+...+++++|++.|+++++++|++..+++++|.+|..    +|++++|+   
T Consensus       443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~---  515 (1157)
T PRK11447        443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQAD---  515 (1157)
T ss_pred             hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH---
Confidence             000                    00011234679999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch--------------------------------------------
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP--------------------------------------------  269 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~--------------------------------------------  269 (498)
                          ..|+++++.+|+++.+++.+|..+...+++++                                            
T Consensus       516 ----~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        516 ----ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             ----HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence                56666666677766666655554443333222                                            


Q ss_pred             H--------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          270 A--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       270 a--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      |                    +.+.|++++|+..|+++++++|+++.++++++.+|...|+.
T Consensus       592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~  653 (1157)
T PRK11447        592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL  653 (1157)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            1                    23356679999999999999999999999999999999984

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.7e-14  Score=141.34  Aligned_cols=193  Identities=17%  Similarity=0.196  Sum_probs=170.8

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ...+.++|+.+|.+++..+          +.-+..+++...|+..|++|++++|.|..+|+.||.+|..++.        
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--------  413 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--------  413 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--------
Confidence            3477899999999999888          3345678899999999999999999999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            ..=|+-+|++|+++.|++...|..||.+|.+    +++.++|+       ++|.+|+...-.+..+++.||.+|
T Consensus       414 ------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~~dte~~~l~~LakLy  476 (559)
T KOG1155|consen  414 ------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILLGDTEGSALVRLAKLY  476 (559)
T ss_pred             ------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhccccchHHHHHHHHHH
Confidence                  9999999999999999999999999999999    99999999       799999999888999999999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-------l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                      .++++.          .+|..+|++.++       +.|+...+..-|+.-+.+.++                   +++|-
T Consensus       477 e~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-------------------~~~As  527 (559)
T KOG1155|consen  477 EELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-------------------FDEAS  527 (559)
T ss_pred             HHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-------------------hHHHH
Confidence            999999          999999999998       456666777779999999998                   89999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          335 IYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       335 ~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      .|..+++..++........++-++
T Consensus       528 ~Ya~~~~~~~~e~eeak~LlReir  551 (559)
T KOG1155|consen  528 YYATLVLKGETECEEAKALLREIR  551 (559)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHH
Confidence            998888888665555544444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.5e-14  Score=144.86  Aligned_cols=192  Identities=18%  Similarity=0.170  Sum_probs=147.0

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      .+....+...+..++..+          ...+..+.+-.+-...|.+|..+||++++.|+.+|.+++-+++         
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q---------  409 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ---------  409 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH---------
Confidence            344445555555555554          2345667788889999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           |++|+..|+++++++|+++.+|..++.+..+    ++++.+++       +.|+.+.+.-|+.++.++..|.++.
T Consensus       410 -----~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP~~~Evy~~fAeiLt  473 (606)
T KOG0547|consen  410 -----YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFPNCPEVYNLFAEILT  473 (606)
T ss_pred             -----HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCCCCchHHHHHHHHHh
Confidence                 9999999999999999999999999999998    88888888       6777788888888888888888888


Q ss_pred             HhcCcchH-------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          263 ELSAIVPA-------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       263 ~~g~~~~a-------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      .+++++.|                               .+..+++.+|+..+++|++++|....++..||.+...+|+ 
T Consensus       474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~-  552 (606)
T KOG0547|consen  474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK-  552 (606)
T ss_pred             hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-
Confidence            88888544                               1234566666666666666666666666666666666666 


Q ss_pred             HHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                                        ..+|+++|+++..+.....
T Consensus       553 ------------------i~eAielFEksa~lArt~~  571 (606)
T KOG0547|consen  553 ------------------IDEAIELFEKSAQLARTES  571 (606)
T ss_pred             ------------------HHHHHHHHHHHHHHHHhHH
Confidence                              6667777776666544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.62  E-value=9.4e-14  Score=143.48  Aligned_cols=165  Identities=13%  Similarity=0.020  Sum_probs=101.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  209 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~  209 (498)
                      ...|++++|+..|++++..+|.+.     ..+..+|.++...|+              +++|+..|+++++++|++..++
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~  217 (389)
T PRK11788        152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD--------------LDAARALLKKALAADPQCVRAS  217 (389)
T ss_pred             HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHhHCcCCHHHH
Confidence            344555555555555555544432     133445555555555              6666666666666666665666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      +.+|.++..    .|++++|+       ..|+++++.+|.+ ..+++.++.+|...|++          ++|+..+++++
T Consensus       218 ~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~----------~~A~~~l~~~~  276 (389)
T PRK11788        218 ILLGDLALA----QGDYAAAI-------EALERVEEQDPEYLSEVLPKLMECYQALGDE----------AEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHH----CCCHHHHH-------HHHHHHHHHChhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence            666666655    66666655       3555555555544 34455566666666666          77777777777


Q ss_pred             HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      +..|+.... ..++.++...|+                   +.+|...++++++..|++..+...+
T Consensus       277 ~~~p~~~~~-~~la~~~~~~g~-------------------~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        277 EEYPGADLL-LALAQLLEEQEG-------------------PEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             HhCCCchHH-HHHHHHHHHhCC-------------------HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            777765433 667777777776                   7889999999999999887655433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.61  E-value=1.6e-13  Score=155.18  Aligned_cols=171  Identities=20%  Similarity=0.200  Sum_probs=126.5

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+...|++++|+.+|+++++.+|++..+++++|.++...|+              +++|+..|++++..+|++..++..+
T Consensus       474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l  539 (899)
T TIGR02917       474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN--------------PDDAIQRFEKVLTIDPKNLRAILAL  539 (899)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            34566777777777777777777777777777777777777              7777777777777777777777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH---------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          213 AIAISDRAKMRGRTKEAEELWK---------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~---------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +.++..    .|++++|+..++                           +|+..+++++..+|.+..+|+.+|.++...|
T Consensus       540 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  615 (899)
T TIGR02917       540 AGLYLR----TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG  615 (899)
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            777777    777777764432                           2334555555555666666666666666666


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      ++          ++|+..|+++++.+|+++.+++.+|.++...|+                   +.+|..+|+++++.+|
T Consensus       616 ~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~~~~~~~  666 (899)
T TIGR02917       616 DL----------NKAVSSFKKLLALQPDSALALLLLADAYAVMKN-------------------YAKAITSLKRALELKP  666 (899)
T ss_pred             CH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCC
Confidence            66          888888888888888888888888888888887                   7888888888888888


Q ss_pred             CHHHH
Q 010864          346 SYSVY  350 (498)
Q Consensus       346 ~~~~~  350 (498)
                      ++...
T Consensus       667 ~~~~~  671 (899)
T TIGR02917       667 DNTEA  671 (899)
T ss_pred             CCHHH
Confidence            86643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=2.9e-14  Score=133.42  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=117.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..++.++++..++++++.+|+++++|+.+|.+|...|+              +++|+.+|+++++++|++..++.++|.+
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            36778999999999999999999999999999999999              9999999999999999999999999998


Q ss_pred             H-HHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          216 I-SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       216 ~-~~~~~~~g~--~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      + ..    .|+  +++|.       ..++++++++|++..+++++|.++.+.|++          ++|+.+|++++++.|
T Consensus       117 L~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~----------~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        117 LYYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY----------AQAIELWQKVLDLNS  175 (198)
T ss_pred             HHHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence            5 56    777  47888       799999999999999999999999999999          999999999999987


Q ss_pred             CCHH
Q 010864          293 DFHR  296 (498)
Q Consensus       293 ~~~~  296 (498)
                      .+..
T Consensus       176 ~~~~  179 (198)
T PRK10370        176 PRVN  179 (198)
T ss_pred             CCcc
Confidence            6543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.61  E-value=1.3e-13  Score=155.75  Aligned_cols=187  Identities=14%  Similarity=0.034  Sum_probs=100.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..+++++...|.+..+|+.+|.+|...|+              +++|+..|+++++.+|++..+++.+|
T Consensus       577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~  642 (899)
T TIGR02917       577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD--------------LNKAVSSFKKLLALQPDSALALLLLA  642 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            3445555555555555555555555555555555555555              55555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~---------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .++..    .|++++|+..|++                           |+..+++..+..|.+...+..+|.++...|+
T Consensus       643 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  718 (899)
T TIGR02917       643 DAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD  718 (899)
T ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence            55555    5555555521111                           1122333333333333333334444444444


Q ss_pred             cchH-----------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010864          267 IVPA-----------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  323 (498)
Q Consensus       267 ~~~a-----------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~  323 (498)
                      +++|                       +...|++++|+..++++++.+|++..+++++|.+|..+|+             
T Consensus       719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-------------  785 (899)
T TIGR02917       719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-------------  785 (899)
T ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-------------
Confidence            3322                       1123333666666666666666666666666666666666             


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       324 ~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                            +.+|..+|+++++..|++......+..+
T Consensus       786 ------~~~A~~~~~~~~~~~p~~~~~~~~l~~~  813 (899)
T TIGR02917       786 ------YDKAIKHYRTVVKKAPDNAVVLNNLAWL  813 (899)
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                  7888888888888888887555544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.60  E-value=1.4e-13  Score=142.15  Aligned_cols=185  Identities=12%  Similarity=0.096  Sum_probs=159.6

Q ss_pred             hhhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC
Q 010864          112 LAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL  177 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~  177 (498)
                      ..++++.|+..+..+....              +..+...|++++|+..|+++++.+|.+..++..++.++...|+    
T Consensus        81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----  156 (389)
T PRK11788         81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD----  156 (389)
T ss_pred             HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch----
Confidence            4567777777776655432              2345677999999999999999999999999999999999999    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  252 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~  252 (498)
                                +++|++.|+++++.+|.+.     ..+.++|.++..    .|++++|+       ..|+++++.+|++..
T Consensus       157 ----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~  215 (389)
T PRK11788        157 ----------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-------ALLKKALAADPQCVR  215 (389)
T ss_pred             ----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhHCcCCHH
Confidence                      9999999999999888753     356788888888    99999999       688888889999999


Q ss_pred             HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       253 a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                      +++.+|.++...|++          ++|+..|+++++.+|++ ..++..++.+|...|+                   +.
T Consensus       216 ~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-------------------~~  266 (389)
T PRK11788        216 ASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-------------------EA  266 (389)
T ss_pred             HHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-------------------HH
Confidence            999999999999999          99999999999998887 4678899999999998                   89


Q ss_pred             HHHHHHHHHHhcCCCHHHH
Q 010864          332 QSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       332 ~A~~~~~~Al~l~p~~~~~  350 (498)
                      +|..++++++++.|+...+
T Consensus       267 ~A~~~l~~~~~~~p~~~~~  285 (389)
T PRK11788        267 EGLEFLRRALEEYPGADLL  285 (389)
T ss_pred             HHHHHHHHHHHhCCCchHH
Confidence            9999999999999987654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.60  E-value=5.9e-14  Score=139.86  Aligned_cols=125  Identities=17%  Similarity=0.130  Sum_probs=115.8

Q ss_pred             hccHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          137 QRILTFAAKRYANAIER---NPE-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~---~P~-~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+..+.++..+.++|..   +|. .+..|+++|.+|...|+              +++|+..|+++++++|+++.+|+++
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~l  104 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------------RALARNDFSQALALRPDMADAYNYL  104 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            35667889999999964   333 47889999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      |.++..    .|++++|+       ..|+++++++|++..+++++|.++...|++          ++|+..|+++++++|
T Consensus       105 g~~~~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----------~eA~~~~~~al~~~P  163 (296)
T PRK11189        105 GIYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAYLNRGIALYYGGRY----------ELAQDDLLAFYQDDP  163 (296)
T ss_pred             HHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCC
Confidence            999999    99999999       699999999999999999999999999999          999999999999999


Q ss_pred             CCHH
Q 010864          293 DFHR  296 (498)
Q Consensus       293 ~~~~  296 (498)
                      +++.
T Consensus       164 ~~~~  167 (296)
T PRK11189        164 NDPY  167 (296)
T ss_pred             CCHH
Confidence            9984

>PLN02789 farnesyltranstransferase

Probab=99.59  E-value=1.3e-13  Score=137.93  Aligned_cols=194  Identities=9%  Similarity=-0.001  Sum_probs=151.8

Q ss_pred             cHHHHHHHHHHhhhcc----------hhhHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          115 QNNAAMELINSVTGVD----------EEGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       115 ~~~~A~~~~~~~~~~~----------~~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      ..+.|+.+...++...          ...+..+| .+++++..+++++..+|++..+|+.++.++..+++          
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----------  121 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----------  121 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------
Confidence            3445566666655544          12234456 68999999999999999999999999999998886          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                        ..+++++.+++++++++|++..+|+++|.++..    .|++++++       .++.++|+.||.|..+|+++|.++.+
T Consensus       122 --~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        122 --DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             --hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHHHHHh
Confidence              013788999999999999999999999999999    88887777       79999999999999999999999988


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      +++..   .....+++++.+..++|.++|++..+|+.++.++...++..               ....++...+.+++..
T Consensus       189 ~~~l~---~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l---------------~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        189 SPLLG---GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL---------------VSDPEVSSVCLEVLSK  250 (320)
T ss_pred             ccccc---cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc---------------ccchhHHHHHHHhhcc
Confidence            74320   00112357899999999999999999999999998744210               0034466667777777


Q ss_pred             CCCHHH
Q 010864          344 KPSYSV  349 (498)
Q Consensus       344 ~p~~~~  349 (498)
                      +|....
T Consensus       251 ~~~s~~  256 (320)
T PLN02789        251 DSNHVF  256 (320)
T ss_pred             cCCcHH
Confidence            776663

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=1.3e-13  Score=128.98  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA  266 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~  266 (498)
                      .++++..++++++.+|++..+|++||.+|..    .|++++|+       ..|+++++++|+++.++.++|.++ ...|+
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ  123 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999    99999999       699999999999999999999985 67777


Q ss_pred             --cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          267 --IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       267 --~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                        +          ++|+..++++++++|++..++++||.+++.+|+                   +.+|+.+|++++++.
T Consensus       124 ~~~----------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-------------------~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        124 HMT----------PQTREMIDKALALDANEVTALMLLASDAFMQAD-------------------YAQAIELWQKVLDLN  174 (198)
T ss_pred             CCc----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence              6          999999999999999999999999999999999                   999999999999999


Q ss_pred             CCHH
Q 010864          345 PSYS  348 (498)
Q Consensus       345 p~~~  348 (498)
                      |.+.
T Consensus       175 ~~~~  178 (198)
T PRK10370        175 SPRV  178 (198)
T ss_pred             CCCc
Confidence            8877

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=2.4e-13  Score=130.65  Aligned_cols=165  Identities=21%  Similarity=0.137  Sum_probs=135.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD---  207 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~---  207 (498)
                      +...|++++|+..|++++..+|+++   .+++.+|.+|...|+              +++|+..|+++++.+|++..   
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence            4668999999999999999999876   688999999999999              99999999999999998765   


Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhcCcch
Q 010864          208 AFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSAIVP  269 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g~~~~  269 (498)
                      +++.+|.++..    . +....-.+.+++|+..|++++..+|++..++                 ..+|.++...|++  
T Consensus       109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~--  182 (235)
T TIGR03302       109 AYYLRGLSNYN----QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY--  182 (235)
T ss_pred             HHHHHHHHHHH----hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--
Confidence            79999999987    5 1111112334444489999999999986543                 3566777777777  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                              .+|+..|+++++..|+   .+.+++++|.++..+|+                   +.+|..+++....-.|
T Consensus       183 --------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-------------------~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       183 --------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-------------------KDLAQDAAAVLGANYP  234 (235)
T ss_pred             --------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhCC
Confidence                    9999999999999765   46899999999999999                   8889988777655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=9.5e-14  Score=139.16  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=153.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ++..|++-.|...|+++|.++|.+...|..+|.+|....+              -++-...|.+|..++|+++++|+..|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~--------------~~~~~~~F~~A~~ldp~n~dvYyHRg  401 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ--------------SEKMWKDFNKAEDLDPENPDVYYHRG  401 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc--------------cHHHHHHHHHHHhcCCCCCchhHhHH
Confidence            5567999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+++-    ++++++|+       +.|++++.++|.++.++..++.++++++++          +++...|+.+++.-|+
T Consensus       402 Qm~fl----L~q~e~A~-------aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  402 QMRFL----LQQYEEAI-------ADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPN  460 (606)
T ss_pred             HHHHH----HHHHHHHH-------HHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCC
Confidence            99999    88888888       799999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      .+++++-.|.++..+++                   +..|.++|.+|+.|.|.
T Consensus       461 ~~Evy~~fAeiLtDqqq-------------------Fd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQ-------------------FDKAVKQYDKAIELEPR  494 (606)
T ss_pred             CchHHHHHHHHHhhHHh-------------------HHHHHHHHHHHHhhccc
Confidence            99999999999999998                   99999999999999998

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1e-12  Score=129.40  Aligned_cols=178  Identities=19%  Similarity=0.147  Sum_probs=165.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      +..+++..|+.+-+++|..+|.+..++...|.++..+++              .++|+-+|+.|..+.|...++|..|-.
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~~Y~GL~h  376 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLEIYRGLFH  376 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            456889999999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          215 AISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~-----------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +|..    .|++.||.-.-                             ++|-+.|++++.++|.+..+.+.++.++...|
T Consensus       377 sYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg  452 (564)
T KOG1174|consen  377 SYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG  452 (564)
T ss_pred             HHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence            9999    99999987432                             57889999999999999999999999999999


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      ++          +.+|..+++++...|| ...++.||.++...+.                   +++|..+|.+|+.++|
T Consensus       453 ~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-------------------~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  453 PT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-------------------PQKAMEYYYKALRQDP  502 (564)
T ss_pred             cc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHhcCc
Confidence            99          9999999999999888 6788999999999998                   9999999999999999


Q ss_pred             CHHHHHHHHHHHHcc
Q 010864          346 SYSVYSSALRLVRSM  360 (498)
Q Consensus       346 ~~~~~~~~l~~~~~~  360 (498)
                      ++.....++..+...
T Consensus       503 ~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  503 KSKRTLRGLRLLEKS  517 (564)
T ss_pred             cchHHHHHHHHHHhc
Confidence            999988888877643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.54  E-value=8.5e-13  Score=144.12  Aligned_cols=151  Identities=11%  Similarity=0.015  Sum_probs=138.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010864          144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       144 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~  223 (498)
                      +..........|.+++++++||.+...+|+              +++|...++.++++.|++..++.+++.++.+    +
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~  133 (694)
T PRK15179         72 LPELLDYVRRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----Q  133 (694)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----h
Confidence            333333445578999999999999999999              9999999999999999999999999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      +++++|+       ..+++++..+|+++.+++++|.++.++|++          ++|+.+|++++..+|+++.++.++|.
T Consensus       134 ~~~eeA~-------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~a~  196 (694)
T PRK15179        134 QGIEAGR-------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGWAQ  196 (694)
T ss_pred             ccHHHHH-------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999       699999999999999999999999999999          99999999999999999999999999


Q ss_pred             HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ++...|+                   .++|...|.+|++...+-.
T Consensus       197 ~l~~~G~-------------------~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        197 SLTRRGA-------------------LWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHcCC-------------------HHHHHHHHHHHHHhhCcch
Confidence            9999999                   7889999999988876544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=1e-13  Score=137.12  Aligned_cols=155  Identities=17%  Similarity=0.127  Sum_probs=119.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      +...++++++...++++....  +.++..|..+|.++.+.|+              .++|+.+|+++++++|++..+...
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------------~~~A~~~~~~al~~~P~~~~~~~~  185 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------------PDKALRDYRKALELDPDDPDARNA  185 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------------HHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHH
Confidence            567799999999999988765  6889999999999999999              999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      ++.++.+    .|+++++.       ..+....+..|+++..+..+|.++..+|++          ++|+.+|+++++.+
T Consensus       186 l~~~li~----~~~~~~~~-------~~l~~~~~~~~~~~~~~~~la~~~~~lg~~----------~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  186 LAWLLID----MGDYDEAR-------EALKRLLKAAPDDPDLWDALAAAYLQLGRY----------EEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHCT----TCHHHHHH-------HHHHHHHHH-HTSCCHCHHHHHHHHHHT-H----------HHHHHHHHHHHHHS
T ss_pred             HHHHHHH----CCChHHHH-------HHHHHHHHHCcCHHHHHHHHHHHhcccccc----------cccccccccccccc
Confidence            9999999    99999977       455555555688888999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      |+++.++.++|.++...|+                   ..+|..++.+++.
T Consensus       245 p~d~~~~~~~a~~l~~~g~-------------------~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGR-------------------KDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT------------------------------------
T ss_pred             ccccccccccccccccccc-------------------ccccccccccccc
Confidence            9999999999999999998                   6777777776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=1e-13  Score=132.25  Aligned_cols=109  Identities=24%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      .++.++|.+|+..|.+||+++|.++..|.+++.+|.++|.              |+.|++.++.||.++|++..+|..||
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            5778999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .+|..    +|++.+|+       ..|+++|+++|++...+.+|..+-.++++.
T Consensus       157 ~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  157 LAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            99999    99999999       689999999999999999999999999887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=5.7e-13  Score=116.48  Aligned_cols=119  Identities=17%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864          145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  224 (498)
Q Consensus       145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g  224 (498)
                      +.|++++..+|++..+.+.+|..+...|+              +++|+..|++++.++|++..+++++|.++..    +|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~   65 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK   65 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence            46899999999999999999999999999              9999999999999999999999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864          225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI  298 (498)
Q Consensus       225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~  298 (498)
                      ++++|+       ..|++++..+|+++..++++|.++...|++          ++|+..|+++++++|++....
T Consensus        66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHH
Confidence            999988       689999999999999999999999999999          999999999999999987643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.50  E-value=2.3e-12  Score=144.61  Aligned_cols=186  Identities=11%  Similarity=-0.020  Sum_probs=166.2

Q ss_pred             hhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCcCCC
Q 010864          113 AEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSL  177 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~~  177 (498)
                      .++.++|+..|.++....           +..+..+|++++|+..|+++++.+|.+    ...+..++.++.+.|+    
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~----  325 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN----  325 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc----
Confidence            367788888888877652           234677899999999999999998876    4678888889999999    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                                +++|+..+++++..+|.               ...++..+|.++..    .|++++|+       +.+++
T Consensus       326 ----------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l~~  384 (765)
T PRK10049        326 ----------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRARE  384 (765)
T ss_pred             ----------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHHHH
Confidence                      99999999999999873               24578899999999    99999999       68999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCC
Q 010864          243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR  322 (498)
Q Consensus       243 Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~  322 (498)
                      ++...|++..+++++|.++...|++          ++|+..++++++++|++..+++.+|.++..+|+            
T Consensus       385 al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~------------  442 (765)
T PRK10049        385 LAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQE------------  442 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------------
Confidence            9999999999999999999999999          999999999999999999999999999999999            


Q ss_pred             CCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          323 EVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       323 ~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                             +.+|...+.++++..|+++....
T Consensus       443 -------~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        443 -------WRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             -------HHHHHHHHHHHHHhCCCCHHHHH
Confidence                   99999999999999999994443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.50  E-value=1.7e-12  Score=125.09  Aligned_cols=180  Identities=19%  Similarity=0.257  Sum_probs=152.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++..|+..|..|++.||++..+++.+|.+|..+|+              -.-|+..+.+.|++.|+...+....|
T Consensus        48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--------------sk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--------------SKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--------------CccchhhHHHHHhcCccHHHHHHHhc
Confidence            3457899999999999999999999999999999999999              88899999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCCH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNSP  251 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------Al~~~~~Al~l~P~~~  251 (498)
                      .++.+    +|++++|+..|++                                          ++....+.|++.|-++
T Consensus       114 ~vllK----~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  114 VVLLK----QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             hhhhh----cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence            99999    9999999976532                                          5566667777777777


Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                      ..+...+.||...|+.          ..||..++.+-++..++.+.+|.++.+++..|+                   ..
T Consensus       190 ~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-------------------~~  240 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-------------------AE  240 (504)
T ss_pred             HHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-------------------HH
Confidence            7777777777777777          999999999999999999999999999999998                   78


Q ss_pred             HHHHHHHHHHhcCCCHH----HHHHHHHHHHcc
Q 010864          332 QSAIYIAAAHALKPSYS----VYSSALRLVRSM  360 (498)
Q Consensus       332 ~A~~~~~~Al~l~p~~~----~~~~~l~~~~~~  360 (498)
                      .++..+..+|+++|++.    .|...-.+++++
T Consensus       241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence            88889999999999987    344444444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=7.2e-13  Score=115.86  Aligned_cols=125  Identities=18%  Similarity=0.143  Sum_probs=116.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHh
Q 010864          193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE  272 (498)
Q Consensus       193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~  272 (498)
                      +.|+++++++|++..+.+.+|.++..    .|++++|+       ..|++++..+|++..+++++|.++..+|++     
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----   67 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----   67 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence            46889999999999999999999999    99999999       688999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       273 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                           ++|+.+|+++++++|+++..++++|.+|...|+                   +..|..+|+++++++|++..+..
T Consensus        68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGE-------------------PESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhccccchHHH
Confidence                 999999999999999999999999999999999                   99999999999999999987555


Q ss_pred             HHHHH
Q 010864          353 ALRLV  357 (498)
Q Consensus       353 ~l~~~  357 (498)
                      ....+
T Consensus       124 ~~~~~  128 (135)
T TIGR02552       124 LKERA  128 (135)
T ss_pred             HHHHH
Confidence            44433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=3.3e-13  Score=128.82  Aligned_cols=118  Identities=31%  Similarity=0.318  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      ++-+.+-|.-+.+.++              |.+|+..|.+||+++|+++..|.|.+.+|.+    +|.++.|+       
T Consensus        81 AE~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV-------  135 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV-------  135 (304)
T ss_pred             HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------
Confidence            3456677888888888              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +.++.||.+||.+..+|..||.+|..+|++          ++|+..|++||+++|++...+.+|..+-.++++
T Consensus       136 kDce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  136 KDCESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999          999999999999999999999999999888876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.1e-12  Score=133.93  Aligned_cols=208  Identities=15%  Similarity=0.177  Sum_probs=177.4

Q ss_pred             cHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864          115 QNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK  184 (498)
Q Consensus       115 ~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~  184 (498)
                      ++.+...+...+...+          -.++...|+..+=...-.+.+...|+.+..|+..|..|...|+           
T Consensus       259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k-----------  327 (611)
T KOG1173|consen  259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK-----------  327 (611)
T ss_pred             hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-----------
Confidence            3444555555555444          1256677777777777788889999999999999999999999           


Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------HHH
Q 010864          185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK---------------------------QAT  237 (498)
Q Consensus       185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~---------------------------~Al  237 (498)
                         +.+|..+|.|+..++|....+|..+|..+..    .|..++|+..|.                           .|-
T Consensus       328 ---~seARry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  328 ---YSEARRYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             ---cHHHHHHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence               9999999999999999999999999999999    999999998873                           377


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcch
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-------FDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-------P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +.|.+|+.+.|.++-.++-+|.+.+..+.|          .+|+.+|+.++..-       +.....+.|||.+|.++++
T Consensus       401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y----------~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  401 KFFKQALAIAPSDPLVLHELGVVAYTYEEY----------PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHHHHHHhcCCCcchhhhhhhheeehHhhh----------HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            899999999999999999999999999999          99999999999532       2345679999999999999


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCchhhhhc
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAG  369 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l~~~~~~~~  369 (498)
                                         +.+|+.+|++++.+.|.+..+..+++.+...+........
T Consensus       471 -------------------~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  471 -------------------YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             -------------------HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence                               9999999999999999999999888888777665544433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=7.6e-13  Score=126.81  Aligned_cols=179  Identities=18%  Similarity=0.173  Sum_probs=141.0

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      .++.++|-+.+|...++.+|+..| .++.+..|+.+|....+              ...|+..|.+.+...|.+.-....
T Consensus       231 kCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ--------------P~~AL~~~~~gld~fP~~VT~l~g  295 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ--------------PERALLVIGEGLDSFPFDVTYLLG  295 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc--------------HHHHHHHHhhhhhcCCchhhhhhh
Confidence            346677777777777777776654 35666777777777766              666666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~---------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      .+.++..    ++++++|.++|+.                           |+.+|++.+++.-.+++.++|+|.|+..-
T Consensus       296 ~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya  371 (478)
T KOG1129|consen  296 QARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA  371 (478)
T ss_pred             hHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence            6666666    6666666666532                           55899999999999999999999999999


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      +++          +-++..|++|+...  |+ -+++|||||.+....|+                   +..|..||+.++
T Consensus       372 qQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-------------------~nlA~rcfrlaL  422 (478)
T KOG1129|consen  372 QQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-------------------FNLAKRCFRLAL  422 (478)
T ss_pred             cch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------------------hHHHHHHHHHHh
Confidence            999          99999999999874  33 36899999999999998                   899999999999


Q ss_pred             hcCCCHHHHHHHHHHHH
Q 010864          342 ALKPSYSVYSSALRLVR  358 (498)
Q Consensus       342 ~l~p~~~~~~~~l~~~~  358 (498)
                      ..++++.....+|.++.
T Consensus       423 ~~d~~h~ealnNLavL~  439 (478)
T KOG1129|consen  423 TSDAQHGEALNNLAVLA  439 (478)
T ss_pred             ccCcchHHHHHhHHHHH
Confidence            99999998888888765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.46  E-value=5.2e-12  Score=118.61  Aligned_cols=166  Identities=22%  Similarity=0.175  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA  220 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~  220 (498)
                      ..+...+-+....+|++..+ .+++..+...|+              -+.+..+..+++..+|.+...+..+|.....  
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~--  112 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR--  112 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH--
Confidence            34777777888889999999 999999999999              8888888888888899998888888998888  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                        .|++.+|+       ..++++..++|++..+|+.+|.+|.+.|++          ++|...|.+++++.|+.+.+.+|
T Consensus       113 --~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nN  173 (257)
T COG5010         113 --NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANN  173 (257)
T ss_pred             --hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhh
Confidence              99999999       699999999999999999999999999999          99999999999999999999999


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 010864          301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML  361 (498)
Q Consensus       301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l  361 (498)
                      ||..|+-.|+                   +..|..++..+...-+.+....+++.++....
T Consensus       174 lgms~~L~gd-------------------~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         174 LGMSLLLRGD-------------------LEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             HHHHHHHcCC-------------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            9999999998                   88899999999888888888888888776543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.45  E-value=1.8e-12  Score=135.57  Aligned_cols=165  Identities=21%  Similarity=0.237  Sum_probs=146.6

Q ss_pred             hHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---
Q 010864          133 GRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---  201 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---  201 (498)
                      .+..+|+|++|+..|++++++        .|.......++|.+|..+++              |.+|+..|++||.+   
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--------------~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--------------YDEAVNLYEEALTIREE  273 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHHH
Confidence            467799999999999999998        67777788889999999999              99999999999998   


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864          202 -----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQT  275 (498)
Q Consensus       202 -----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~  275 (498)
                           +|..+.++.|||.+|..    .|++++|..+++.|+..+++.+..+ |.-+..+.+++.++..++++        
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~--------  341 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY--------  341 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch--------
Confidence                 56667899999999999    9999999999999999999965444 44567899999999999999        


Q ss_pred             hHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          276 IVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                        ++|+.+|++++++        ++.-+..+.|||.+|+.+|+                   |.+|.++|++|+.+.
T Consensus       342 --Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-------------------~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  342 --EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-------------------YKEAEELYKKAIQIL  397 (508)
T ss_pred             --hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHH
Confidence              9999999999987        23447889999999999999                   888888888888765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.45  E-value=8.3e-13  Score=130.54  Aligned_cols=188  Identities=19%  Similarity=0.189  Sum_probs=116.7

Q ss_pred             hcHHHHHHHHHHhhhcchh---------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864          114 EQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK  184 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~  184 (498)
                      ++.+.|...+.+++.....         .+...+++++|+.++.++.+.+ .++..+.....++...++           
T Consensus        58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~-----------  125 (280)
T PF13429_consen   58 GDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGD-----------  125 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhHHHHHHHHHhH-----------
Confidence            4455555555555444411         1245789999999999988766 456778888888999998           


Q ss_pred             hhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          185 DALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       185 ~~~~~~A~~~~~~Al~l~--p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                         ++++...++++....  +.+...|..+|.++.+    .|+.++|+       ..|+++++++|++..+++.++.++.
T Consensus       126 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  126 ---YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             ---HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence               999999999988765  6788999999999999    99999999       7999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      ..|++          +++...++...+..|+++..+..+|.+|..+|+                   +.+|..+|+++++
T Consensus       192 ~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------------------~~~Al~~~~~~~~  242 (280)
T PF13429_consen  192 DMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------------------YEEALEYLEKALK  242 (280)
T ss_dssp             TTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--------------------HHHHHHHHHHHHH
T ss_pred             HCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-------------------ccccccccccccc
Confidence            99999          998888888888889999999999999999999                   9999999999999


Q ss_pred             cCCCHHHHHHHHHH
Q 010864          343 LKPSYSVYSSALRL  356 (498)
Q Consensus       343 l~p~~~~~~~~l~~  356 (498)
                      .+|+++.+...+.-
T Consensus       243 ~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  243 LNPDDPLWLLAYAD  256 (280)
T ss_dssp             HSTT-HHHHHHHHH
T ss_pred             cccccccccccccc
Confidence            99999965555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.1e-12  Score=128.01  Aligned_cols=182  Identities=22%  Similarity=0.223  Sum_probs=148.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC---------------------------CCCCCchhh
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL---------------------------DSTSPSKDA  186 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~---------------------------~~~~~~~~~  186 (498)
                      .++..+|..|+..|.++++++ .+..-+.+.+.+|+..|....+                           -+..+..++
T Consensus       234 aykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~  312 (539)
T KOG0548|consen  234 AYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE  312 (539)
T ss_pred             HHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            455778888888888888888 7777788888888887764322                           222455567


Q ss_pred             hHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          187 LLEEACKKYDEATRL--------------------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l--------------------------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      +++.|+..|+++|.-                          +|.-+.-...-|..++.    .|+|..|+       .+|
T Consensus       313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av-------~~Y  381 (539)
T KOG0548|consen  313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAV-------KHY  381 (539)
T ss_pred             hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHH-------HHH
Confidence            788888888888764                          33333444455666666    77777777       799


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCC
Q 010864          241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN  320 (498)
Q Consensus       241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~  320 (498)
                      .+||..+|+++.++.|++.||.++|.+          ..|+...+++++++|++..+|..-|.++..+.+          
T Consensus       382 teAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~----------  441 (539)
T KOG0548|consen  382 TEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAALRAMKE----------  441 (539)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------
Confidence            999999999999999999999999999          999999999999999999999999999999999          


Q ss_pred             CCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          321 PREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                               |..|.++|.++++++|++..+...+..
T Consensus       442 ---------ydkAleay~eale~dp~~~e~~~~~~r  468 (539)
T KOG0548|consen  442 ---------YDKALEAYQEALELDPSNAEAIDGYRR  468 (539)
T ss_pred             ---------HHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence                     999999999999999999866555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.44  E-value=5.2e-12  Score=141.69  Aligned_cols=140  Identities=10%  Similarity=-0.017  Sum_probs=135.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|++++|+..|.+++..+|..+.++..+|.++...|+              +++|+..|+++++++|++..++..+|.
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~   91 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ--------------WQNSLTLWQKALSLEPQNDDYQRGLIL   91 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            448999999999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ++..    .|++++|+       ..++++++.+|+++. +..+|.++...|++          ++|+..|++++++.|++
T Consensus        92 ~l~~----~g~~~eA~-------~~l~~~l~~~P~~~~-~~~la~~l~~~g~~----------~~Al~~l~~al~~~P~~  149 (765)
T PRK10049         92 TLAD----AGQYDEAL-------VKAKQLVSGAPDKAN-LLALAYVYKRAGRH----------WDELRAMTQALPRAPQT  149 (765)
T ss_pred             HHHH----CCCHHHHH-------HHHHHHHHhCCCCHH-HHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCC
Confidence            9999    99999999       699999999999999 99999999999999          99999999999999999


Q ss_pred             HHHHHHHHHHHHHcch
Q 010864          295 HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       295 ~~a~~~Lg~~~~~~g~  310 (498)
                      ..++..++.++...+.
T Consensus       150 ~~~~~~la~~l~~~~~  165 (765)
T PRK10049        150 QQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999988776

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=7.6e-13  Score=126.82  Aligned_cols=188  Identities=14%  Similarity=0.114  Sum_probs=160.8

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ...+...|+..+...+...          ...+..++++++|+++|+.+++.+|.+.++...+|.-|+..++        
T Consensus       268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~--------  339 (478)
T KOG1129|consen  268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN--------  339 (478)
T ss_pred             HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC--------
Confidence            3455666666666665554          2344567899999999999999999999999999999999998        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWG  258 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~-~~~a~~~lg  258 (498)
                            .+-|+.+|++.|.+.-.+++.+.|+|.|+..    .++++-++       ..|++|+..-  |+ -+++|+|||
T Consensus       340 ------PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L-------~sf~RAlstat~~~~aaDvWYNlg  402 (478)
T KOG1129|consen  340 ------PEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVL-------PSFQRALSTATQPGQAADVWYNLG  402 (478)
T ss_pred             ------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhH-------HHHHHHHhhccCcchhhhhhhccc
Confidence                  9999999999999999999999999999999    99999998       5777777554  33 568999999


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  338 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  338 (498)
                      .+....|++          .-|..+|+-|+.-++++.++++|||.+-...|+                   ...|..++.
T Consensus       403 ~vaV~iGD~----------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-------------------i~~Arsll~  453 (478)
T KOG1129|consen  403 FVAVTIGDF----------NLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-------------------ILGARSLLN  453 (478)
T ss_pred             eeEEeccch----------HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-------------------hHHHHHHHH
Confidence            999999999          999999999999999999999999999999998                   889999999


Q ss_pred             HHHhcCCCHHHHHHH
Q 010864          339 AAHALKPSYSVYSSA  353 (498)
Q Consensus       339 ~Al~l~p~~~~~~~~  353 (498)
                      .|....|+......+
T Consensus       454 ~A~s~~P~m~E~~~N  468 (478)
T KOG1129|consen  454 AAKSVMPDMAEVTTN  468 (478)
T ss_pred             HhhhhCccccccccc
Confidence            999999886543333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=5e-12  Score=132.28  Aligned_cols=172  Identities=17%  Similarity=0.172  Sum_probs=147.4

Q ss_pred             hhhhcHHHHHHHHHHhhhcc------------------hhhHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 010864          111 QLAEQNNAAMELINSVTGVD------------------EEGRSRQRILTFAAKRYANAIER--------NPEDYDALYNW  164 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~------------------~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~l  164 (498)
                      ...++++.|..++..++...                  +..+..++++++|+..|++|+.+        +|..+.++.+|
T Consensus       210 ~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL  289 (508)
T KOG1840|consen  210 AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL  289 (508)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678888888888877771                  34467789999999999999986        35667889999


Q ss_pred             HHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       165 g~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      |.+|...|+              |++|..++++|+++        .|.-+..+.+++.++..    ++++++|..+++++
T Consensus       290 a~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  290 AVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHH
Confidence            999999999              99999999999998        33455678999999999    99999999999999


Q ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHH
Q 010864          237 TKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVLYG  307 (498)
Q Consensus       237 l~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~--------P~~~~a~~~Lg~~~~~  307 (498)
                      ++.|..++..+ +.-+..+.|||.+|+.+|++          ++|...|++||.+.        +.....+++||..|..
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~  421 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE  421 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence            99999888665 47789999999999999999          99999999999873        4456788999999987


Q ss_pred             cch
Q 010864          308 LAE  310 (498)
Q Consensus       308 ~g~  310 (498)
                      .++
T Consensus       422 ~k~  424 (508)
T KOG1840|consen  422 LKK  424 (508)
T ss_pred             hcc
Confidence            775

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.43  E-value=6.9e-12  Score=134.85  Aligned_cols=204  Identities=15%  Similarity=0.081  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864          116 NNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQESADNVSLDSTSPSK  184 (498)
Q Consensus       116 ~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~~~~~~~~~  184 (498)
                      .+.|...|..++...          +...+..++|..|+.+|++++.++|.. ++....+|.+++.+++           
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~-----------  214 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM-----------  214 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc-----------
Confidence            455666665555444          112345688888888888888888864 4667788888888888           


Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                         .+.|+..|.+|++++|.++.++..||.+-..    ..+.    +.|..++..+.++...++.||.+++.|+.-++..
T Consensus       215 ---~~~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK  283 (1018)
T KOG2002|consen  215 ---SEKALLAFERALQLDPTCVSALVALGEVDLN----FNDS----DSYKKGVQLLQRAYKENNENPVALNHLANHFYFK  283 (1018)
T ss_pred             ---hhhHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccch----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence               9999999999999999999999999988776    4443    5677788999999999999999999999999999


Q ss_pred             cCcchH---------------------------HhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhcc
Q 010864          265 SAIVPA---------------------------REKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTG  316 (498)
Q Consensus       265 g~~~~a---------------------------~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~  316 (498)
                      |+|+.+                           ++.+|++++|..+|.+++..++++ .-.++.||..|...|+      
T Consensus       284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d------  357 (1018)
T KOG2002|consen  284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD------  357 (1018)
T ss_pred             ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch------
Confidence            999765                           567999999999999999999998 7788999999999998      


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          317 GTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       317 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                                   +..+..||++.++..|++......|+.+...
T Consensus       358 -------------le~s~~~fEkv~k~~p~~~etm~iLG~Lya~  388 (1018)
T KOG2002|consen  358 -------------LEESKFCFEKVLKQLPNNYETMKILGCLYAH  388 (1018)
T ss_pred             -------------HHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence                         8999999999999999999777777665443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=5.1e-12  Score=138.09  Aligned_cols=133  Identities=11%  Similarity=0.067  Sum_probs=125.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ..+.|++++|...++.+++++|++..++.+++.++.++++              +++|+..+++++..+|+++.+++.+|
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------------~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------------IEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            4568999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++.+    +|++++|+       ..|++++..+|+++.++.++|.++...|+.          ++|...|++|+....+
T Consensus       162 ~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        162 KSWDE----IGQSEQAD-------ACFERLSRQHPEFENGYVGWAQSLTRRGAL----------WRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHH----hcchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhCc
Confidence            99999    99999999       699999999999999999999999999999          9999999999999776


Q ss_pred             CHHHHHHH
Q 010864          294 FHRAIYNL  301 (498)
Q Consensus       294 ~~~a~~~L  301 (498)
                      -...+.++
T Consensus       221 ~~~~~~~~  228 (694)
T PRK15179        221 GARKLTRR  228 (694)
T ss_pred             chHHHHHH
Confidence            66665553

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.42  E-value=1.3e-12  Score=116.39  Aligned_cols=121  Identities=28%  Similarity=0.425  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       231 ~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      -.|++|.+.++..+..||.++++++++|.+|.++.++....+....+++|+..|++||.++|+...+++++|.+|..++.
T Consensus         5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            35777889999999999999999999999999999997777777899999999999999999999999999999999996


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  359 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~  359 (498)
                      ..        +......+.|++|..||++|...+|++..|+.+|.+...
T Consensus        85 l~--------~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   85 LT--------PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             H-----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             hc--------CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            21        112233457999999999999999999999999999864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.41  E-value=3.4e-11  Score=128.85  Aligned_cols=210  Identities=17%  Similarity=0.100  Sum_probs=137.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC------------CCCCC--------CCchhhhHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV------------SLDST--------SPSKDALLEEACKK  194 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~------------~~~~~--------~~~~~~~~~~A~~~  194 (498)
                      +..|++++|...+.++|..+|.++.+|+.||.+|.++|+..            .|...        .....|++.+|+-+
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            44599999999999999999999999999999999998831            11111        12344567777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------HHHHHHH
Q 010864          195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--------------------------------ATKNYEK  242 (498)
Q Consensus       195 ~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~--------------------------------Al~~~~~  242 (498)
                      |.+|++++|.+....++...+|.+    +|+...|++-|.+                                |++.++.
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            777777777777777777777766    7777777754321                                2222222


Q ss_pred             HHhcC--CCCHHHHHHHHHHHHHhcCcchH--------------------------------------------------
Q 010864          243 AVQLN--WNSPQALNNWGLALQELSAIVPA--------------------------------------------------  270 (498)
Q Consensus       243 Al~l~--P~~~~a~~~lg~~l~~~g~~~~a--------------------------------------------------  270 (498)
                      ++...  -....-++-++.++....+++.+                                                  
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i  385 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI  385 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence            22200  00111122222222222222211                                                  


Q ss_pred             --------------------------------------HhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchh
Q 010864          271 --------------------------------------REKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       271 --------------------------------------~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~~  311 (498)
                                                            +-..|++++|+.+|..++...+. +..+|+.+|.||..+|. 
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-  464 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-  464 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-
Confidence                                                  12357778888888888776553 46789999999999998 


Q ss_pred             HHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCchhhh
Q 010864          312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLK  367 (498)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l~~~~~~  367 (498)
                                        ++.|+++|++++.+.|++...+..|.-+...+..+...
T Consensus       465 ------------------~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka  502 (895)
T KOG2076|consen  465 ------------------YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA  502 (895)
T ss_pred             ------------------HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence                              99999999999999999998777777766666655543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=3.5e-12  Score=130.78  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010864          162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  241 (498)
Q Consensus       162 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~  241 (498)
                      +..|..+++.|+              +.+|+-+|+.|+.-+|.++++|..||.+...    .++-..|+       ..++
T Consensus       289 f~eG~~lm~nG~--------------L~~A~LafEAAVkqdP~haeAW~~LG~~qaE----NE~E~~ai-------~AL~  343 (579)
T KOG1125|consen  289 FKEGCNLMKNGD--------------LSEAALAFEAAVKQDPQHAEAWQKLGITQAE----NENEQNAI-------SALR  343 (579)
T ss_pred             HHHHHHHHhcCC--------------chHHHHHHHHHHhhChHHHHHHHHhhhHhhh----ccchHHHH-------HHHH
Confidence            345666666666              9999999999999999999999999999999    88888888       7999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhcCcchH---------------------------------------------------
Q 010864          242 KAVQLNWNSPQALNNWGLALQELSAIVPA---------------------------------------------------  270 (498)
Q Consensus       242 ~Al~l~P~~~~a~~~lg~~l~~~g~~~~a---------------------------------------------------  270 (498)
                      ++++++|+|..++..||..|...|--..|                                                   
T Consensus       344 rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~  423 (579)
T KOG1125|consen  344 RCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ  423 (579)
T ss_pred             HHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999887765555                                                   


Q ss_pred             ----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          271 ----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       271 ----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                                      +.-.+.|++|+++|+.||..+|++...|+.||-++.+-.+                   ..+|+
T Consensus       424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-------------------s~EAI  484 (579)
T KOG1125|consen  424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-------------------SEEAI  484 (579)
T ss_pred             CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-------------------cHHHH
Confidence                            2236889999999999999999999999999999888777                   78999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHH
Q 010864          335 IYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       335 ~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      ..|.+|++|.|.+.+.+.++++-
T Consensus       485 sAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  485 SAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             HHHHHHHhcCCCeeeeehhhhhh
Confidence            99999999999999777776653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=1.1e-11  Score=109.19  Aligned_cols=107  Identities=18%  Similarity=0.241  Sum_probs=101.4

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010864          150 AIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE  228 (498)
Q Consensus       150 al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e  228 (498)
                      ...++ ++.-+..|.+|..++..|+              +++|+..|+....++|.+...|++||.++..    +|++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~   87 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGE   87 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHH
Confidence            44566 7788899999999999999              9999999999999999999999999999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      |+       ..|.+|+.++|+++.+++|+|.++...|+.          +.|++.|+.||..-
T Consensus        88 AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~  133 (157)
T PRK15363         88 AI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC  133 (157)
T ss_pred             HH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence            99       799999999999999999999999999999          99999999999875

>TIGR00540 hemY_coli hemY protein

Probab=99.36  E-value=2.8e-10  Score=118.77  Aligned_cols=209  Identities=13%  Similarity=-0.007  Sum_probs=165.6

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDST  180 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~  180 (498)
                      ..|++..|.+.+.+.....          +.....+|+++.|..+|.++.+..|++. .+...++.++...|+       
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~-------  168 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE-------  168 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------
Confidence            4467777777776665543          2334556899999999999988888875 466667888888898       


Q ss_pred             CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 010864          181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT-----------------------  237 (498)
Q Consensus       181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al-----------------------  237 (498)
                             +++|...+++.++.+|++..++..++.++..    .|++++|.+.+++.+                       
T Consensus       169 -------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       169 -------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999998    999988887654311                       


Q ss_pred             --------HHHHHHHhcCC----CCHHHHHHHHHHHHHhcCcchHH--------------------------hhhhhHHH
Q 010864          238 --------KNYEKAVQLNW----NSPQALNNWGLALQELSAIVPAR--------------------------EKQTIVRT  279 (498)
Q Consensus       238 --------~~~~~Al~l~P----~~~~a~~~lg~~l~~~g~~~~a~--------------------------~~~~~~~~  279 (498)
                              ..+.++.+..|    +++..+..++..+...|+++.|.                          -..++.+.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence                    24444555566    58999999999999999998771                          12466788


Q ss_pred             HHHHHHHHHHhcCCCH--HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH--HHHhcCCCHHHHHHHHH
Q 010864          280 AISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA--AAHALKPSYSVYSSALR  355 (498)
Q Consensus       280 Ai~~~~~Al~l~P~~~--~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~Al~l~p~~~~~~~~l~  355 (498)
                      ++..++++++.+|+++  ..+..+|.+++..|+                   +.+|..+|+  ++++.+|+...+.....
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-------------------~~~A~~~le~a~a~~~~p~~~~~~~La~  378 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-------------------FIEAADAFKNVAACKEQLDANDLAMAAD  378 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-------------------HHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence            9999999999999999  888999999999999                   999999999  68889999987664433


Q ss_pred             HH
Q 010864          356 LV  357 (498)
Q Consensus       356 ~~  357 (498)
                      +.
T Consensus       379 ll  380 (409)
T TIGR00540       379 AF  380 (409)
T ss_pred             HH
Confidence            33

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=6.6e-11  Score=117.71  Aligned_cols=173  Identities=16%  Similarity=0.089  Sum_probs=133.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..|++++|.+.|.++|.-+....++++++|..+..+|+              +++|+++|-+.-.+--+++.+++.++.+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~--------------ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN--------------LDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34666666666666666666666666666666666666              6666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------------------H
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------R  271 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------------------~  271 (498)
                      |..    +.+..+|+       +.|.++..+-|+++..+..||.+|-+.|+-..|                        +
T Consensus       568 ye~----led~aqai-------e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  568 YEL----LEDPAQAI-------ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             HHH----hhCHHHHH-------HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            666    55655555       799999999999999999999999999987666                        2


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                      -...-.++||.+|++|--+.|+.......++.|+.+.|+                   |+.|.+.|...+.--|.+....
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-------------------yqka~d~yk~~hrkfpedldcl  697 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-------------------YQKAFDLYKDIHRKFPEDLDCL  697 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHhCccchHHH
Confidence            234567899999999999999999999999999999999                   9999999999999999887544


Q ss_pred             H
Q 010864          352 S  352 (498)
Q Consensus       352 ~  352 (498)
                      .
T Consensus       698 k  698 (840)
T KOG2003|consen  698 K  698 (840)
T ss_pred             H
Confidence            3

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.36  E-value=2.8e-11  Score=113.73  Aligned_cols=142  Identities=22%  Similarity=0.182  Sum_probs=135.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|+-+.+..+..+++..+|.+.+.+..+|...+..|+              |.+|+..++++..++|++.++|+.+|
T Consensus        76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             HHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHH
Confidence            4456778888889999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+|.+    .|++++|.       ..|.+++++.|+++.+.+|+|..|.-.|++          +.|..++..+....+.
T Consensus       142 aaldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~a  200 (257)
T COG5010         142 AALDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCC
Confidence            99999    99999999       799999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcch
Q 010864          294 FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~  310 (498)
                      +..+..||+.+...+|+
T Consensus       201 d~~v~~NLAl~~~~~g~  217 (257)
T COG5010         201 DSRVRQNLALVVGLQGD  217 (257)
T ss_pred             chHHHHHHHHHHhhcCC
Confidence            99999999999999998

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=2e-10  Score=107.13  Aligned_cols=175  Identities=17%  Similarity=0.067  Sum_probs=157.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|+.+-|..++++.-...|+........|..+...|.              +++|+++|+..|+-+|.+..++-..-.
T Consensus        63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            446889999999999999899999999999999999999              999999999999999999999987777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      +...    +|+..+|+       +....-++.-+++.++|..++.+|...|+|          ++|.-+|++.+-++|-+
T Consensus       129 ilka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  129 ILKA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFN  187 (289)
T ss_pred             HHHH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCc
Confidence            7777    99999999       688888889999999999999999999999          99999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       295 ~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      +..+..+|.+++.+|.                .+.+..+..||.+++++.|.+.+...++.+..+.
T Consensus       188 ~l~f~rlae~~Yt~gg----------------~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGG----------------AENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            9999999999999984                3347899999999999999777666666665443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=1.5e-11  Score=108.40  Aligned_cols=112  Identities=13%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          199 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       199 l~l~-p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      ..+. ++..+..|.+|..+..    .|++++|.       +.|+-...+||.+...|++||.+++.+|++          
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------   85 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------   85 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence            3456 7788899999999999    99999999       799999999999999999999999999999          


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                      .+||..|.+|+.++|+++..++|+|.|++..|+                   ...|..+|+.++..-.+++.+
T Consensus        86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-------------------~~~A~~aF~~Ai~~~~~~~~~  139 (157)
T PRK15363         86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-------------------VCYAIKALKAVVRICGEVSEH  139 (157)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhccChhH
Confidence            999999999999999999999999999999999                   889999999999987544433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.35  E-value=4.6e-11  Score=114.76  Aligned_cols=150  Identities=20%  Similarity=0.147  Sum_probs=126.7

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      .++..++.++.+|..+...|+              +++|+..|++++..+|++.   .+++.+|.++..    .|++++|
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A   89 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGD--------------YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA   89 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence            445678999999999999999              9999999999999999875   688999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH--------
Q 010864          230 EELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI--------  298 (498)
Q Consensus       230 ~~~~~~Al~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~--------  298 (498)
                      +       ..|+++++.+|+++.   +++++|.++.....  ......+++++|+..|+++++.+|++..++        
T Consensus        90 ~-------~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~  160 (235)
T TIGR03302        90 I-------AAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY  160 (235)
T ss_pred             H-------HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            9       699999999998776   79999999987611  112334455999999999999999986543        


Q ss_pred             ---------HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          299 ---------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       299 ---------~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                               .++|.+|+..|+                   +.+|+..|.+++...|+.+
T Consensus       161 ~~~~~~~~~~~~a~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       161 LRNRLAGKELYVARFYLKRGA-------------------YVAAINRFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHCCCCc
Confidence                     356777778887                   8999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.34  E-value=2.3e-11  Score=108.44  Aligned_cols=119  Identities=31%  Similarity=0.416  Sum_probs=95.0

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864          138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  217 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~  217 (498)
                      --|+.|.+.++.....||.++++++++|.++.++.+..    ...+....+++|+.-|++||.++|+..+++++||.+|.
T Consensus         5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk----~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK----QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            34688999999999999999999999999999997721    11234467999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                      .+++...+..+|.++|++|..+|++|+..+|+|...+..|..+
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999999987655555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.33  E-value=2.6e-11  Score=123.77  Aligned_cols=115  Identities=23%  Similarity=0.131  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      +...|..++..|+              |++|+..|++|++++|++..+|+++|.+|..    +|++++|+       ..+
T Consensus         5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~   59 (356)
T PLN03088          5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA   59 (356)
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence            5567888888998              9999999999999999999999999999999    99999999       699


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      ++++.++|+++.+++++|.+|..+|++          ++|+.+|+++++++|++..+...++.|...+.+
T Consensus        60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999          999999999999999999999999998766643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.33  E-value=3.2e-10  Score=117.77  Aligned_cols=186  Identities=13%  Similarity=0.053  Sum_probs=155.3

Q ss_pred             hhhhcHHHHHHHHHHhhhcch-----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864          111 QLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  179 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~  179 (498)
                      ...++++.+..++.++.....           ..+...|++++|+..+++.++.+|+++.++..++.+|...|+      
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------  202 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------  202 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------
Confidence            456778888888888776541           234557999999999999999999999999999999999999      


Q ss_pred             CCCchhhhHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 010864          180 TSPSKDALLEEACKKYDEATRL------------------------------------------CPTLHDAFYNWAIAIS  217 (498)
Q Consensus       180 ~~~~~~~~~~~A~~~~~~Al~l------------------------------------------~p~~~~a~~~lg~~~~  217 (498)
                              +++|++.+.+..+.                                          .|+++.++..++..+.
T Consensus       203 --------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~  274 (398)
T PRK10747        203 --------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI  274 (398)
T ss_pred             --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence                    77777554444432                                          3446667777788888


Q ss_pred             HHHHHcCCHHHHHHHHH------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhh
Q 010864          218 DRAKMRGRTKEAEELWK------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK  273 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~  273 (498)
                      .    .|+.++|.+..+                        ++++..++.++.+|+++..+..+|.++...+++      
T Consensus       275 ~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~------  344 (398)
T PRK10747        275 E----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW------  344 (398)
T ss_pred             H----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH------
Confidence            8    999999997763                        477888889999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       274 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                          ++|..+|++++++.|++. .+..|+.++..+|+                   .++|..+|++++.+.
T Consensus       345 ----~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~-------------------~~~A~~~~~~~l~~~  391 (398)
T PRK10747        345 ----QEASLAFRAALKQRPDAY-DYAWLADALDRLHK-------------------PEEAAAMRRDGLMLT  391 (398)
T ss_pred             ----HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhh
Confidence                999999999999999964 46679999999999                   789999999988763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.32  E-value=6.7e-10  Score=115.40  Aligned_cols=205  Identities=13%  Similarity=0.047  Sum_probs=166.2

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCcCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDAL-YNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~~~~~~  181 (498)
                      .|++..|.+.+.+.....          ...-...|+++.|..+|.++.+.+|++..+. ...+.++...|+        
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~--------  168 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE--------  168 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC--------
Confidence            356666666665544331          1222568999999999999999999986444 445899999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK-----------------------  238 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~-----------------------  238 (498)
                            +++|+..++++++.+|++..++..++.+|..    .|++++|++.+.+..+                       
T Consensus       169 ------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~  238 (398)
T PRK10747        169 ------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ  238 (398)
T ss_pred             ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence                  9999999999999999999999999999999    9999999966643221                       


Q ss_pred             --------HHHHHH----hcCCCCHHHHHHHHHHHHHhcCcchHH---------------------hhhhhHHHHHHHHH
Q 010864          239 --------NYEKAV----QLNWNSPQALNNWGLALQELSAIVPAR---------------------EKQTIVRTAISKFR  285 (498)
Q Consensus       239 --------~~~~Al----~l~P~~~~a~~~lg~~l~~~g~~~~a~---------------------~~~~~~~~Ai~~~~  285 (498)
                              .+.+..    ...|+++.++..++..+...|+.++|.                     -..++.++++...+
T Consensus       239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e  318 (398)
T PRK10747        239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR  318 (398)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence                    111111    234668999999999999999998871                     12488999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       286 ~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      +.++.+|+++..+..+|.++...++                   +.+|..+|++++++.|++..+....
T Consensus       319 ~~lk~~P~~~~l~l~lgrl~~~~~~-------------------~~~A~~~le~al~~~P~~~~~~~La  368 (398)
T PRK10747        319 QQIKQHGDTPLLWSTLGQLLMKHGE-------------------WQEASLAFRAALKQRPDAYDYAWLA  368 (398)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999999999999999999                   9999999999999999998755433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=6e-10  Score=103.99  Aligned_cols=202  Identities=15%  Similarity=0.071  Sum_probs=158.1

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      .++.+.|...++.+-...          +.-+-..|.+++|+++|+..++-||.|..++...-.+...+|+         
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK---------  135 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK---------  135 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC---------
Confidence            355556666665543333          2223457999999999999999999999999999889999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           --+||+.+..-++..+++.++|..|+.+|..    .|+|+.|.       -+|++.+-++|.++-.+..+|.+++
T Consensus       136 -----~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  136 -----NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             -----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                 7799999999999999999999999999999    88888888       7999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      -+|..       .++.-|.++|.++++++|.+..+++.+-.+...+.....+......  +....++..-++.-+++...
T Consensus       200 t~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~K--~~a~~~l~~~aas~l~r~~q  270 (289)
T KOG3060|consen  200 TQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRKK--DVAAPDLISLAASQLERISQ  270 (289)
T ss_pred             HHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhhh--hhhhhhHHHhHHHHHHHHHH
Confidence            99875       6779999999999999999999998887776655532222222111  13334445556666666664


Q ss_pred             cCCCHH
Q 010864          343 LKPSYS  348 (498)
Q Consensus       343 l~p~~~  348 (498)
                      ..++..
T Consensus       271 ~s~~~~  276 (289)
T KOG3060|consen  271 KSKNKL  276 (289)
T ss_pred             hccchh
Confidence            444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.6e-11  Score=119.74  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-----
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----  206 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----  206 (498)
                      .++.-++++++|+..--..+++++.+.++++.+|.+++..+.              .+.|+..|+++|.++|++.     
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~--------------~~ka~~hf~qal~ldpdh~~sk~~  242 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN--------------ADKAINHFQQALRLDPDHQKSKSA  242 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc--------------hHHHHHHHhhhhccChhhhhHHhH
Confidence            455668999999999999999999999999999999999999              9999999999999999864     


Q ss_pred             -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhh
Q 010864          207 -------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQT  275 (498)
Q Consensus       207 -------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~  275 (498)
                             ..+..-|.-..+    .|++..|.       ++|..+|.++|++    +..|.|++.+...+|+.        
T Consensus       243 ~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~idP~n~~~naklY~nra~v~~rLgrl--------  303 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL--------  303 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhcCCccccchhHHHHHHhHhhhcccCCc--------
Confidence                   344555666666    89999888       6999999999985    56799999999999999        


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                        ++|+...+.|+.|++.+..++...|.|+..+++                   |..|..+|+++.++..+
T Consensus       304 --~eaisdc~~Al~iD~syikall~ra~c~l~le~-------------------~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  304 --REAISDCNEALKIDSSYIKALLRRANCHLALEK-------------------WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             --hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhccc
Confidence              999999999999999999999999999999999                   99999999999999877

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.31  E-value=1.4e-10  Score=129.01  Aligned_cols=163  Identities=9%  Similarity=0.037  Sum_probs=137.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      .+++|+++.|+..|+++++.+|+++.+.+.+..++...|+              +++|+.++++++.-.|........+|
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            4679999999999999999999997555599999999999              99999999999933444555556668


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    +|++++|+       ..|+++++.+|+++.++..++.++...++.          ++|+..+++++..+|+
T Consensus       110 ~ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        110 RAYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcc
Confidence            89999    99999999       699999999999999999999999999999          9999999999999998


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                      +... ..++.++...++                   +.+|+..|+++++++|++..+.
T Consensus       169 ~~~~-l~layL~~~~~~-------------------~~~AL~~~ekll~~~P~n~e~~  206 (822)
T PRK14574        169 VQNY-MTLSYLNRATDR-------------------NYDALQASSEAVRLAPTSEEVL  206 (822)
T ss_pred             hHHH-HHHHHHHHhcch-------------------HHHHHHHHHHHHHhCCCCHHHH
Confidence            5543 444444444444                   5569999999999999998543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.30  E-value=4.5e-10  Score=108.65  Aligned_cols=182  Identities=13%  Similarity=0.107  Sum_probs=144.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      +..|++..||+...+.|++.|-++..+..++.+|...|+              ...||..++.+-++..++.+.+|.+..
T Consensus       166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~  231 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQ  231 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHH
Confidence            345888899999999999999999999999999999999              999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHhcCcchH------------
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA------------LQELSAIVPA------------  270 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~------------l~~~g~~~~a------------  270 (498)
                      ++..    .|+...++       ...+.+|++||++-.++-.+-.+            ..+.+.|-++            
T Consensus       232 L~Y~----vgd~~~sL-------~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep  300 (504)
T KOG0624|consen  232 LLYT----VGDAENSL-------KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP  300 (504)
T ss_pred             HHHh----hhhHHHHH-------HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            8888    88888888       56677777777654443222111            1111122111            


Q ss_pred             ----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          271 ----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       271 ----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                                      +...+++-+||..+.++|.++|++..++...+.+|...-.                   |+.|+
T Consensus       301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~-------------------YD~AI  361 (504)
T KOG0624|consen  301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM-------------------YDDAI  361 (504)
T ss_pred             cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH-------------------HHHHH
Confidence                            3346777999999999999999999999999999887665                   99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          335 IYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       335 ~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      ..|++|+++++++.....++...+++
T Consensus       362 ~dye~A~e~n~sn~~~reGle~Akrl  387 (504)
T KOG0624|consen  362 HDYEKALELNESNTRAREGLERAKRL  387 (504)
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            99999999999999888777665544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=9.9e-11  Score=119.30  Aligned_cols=141  Identities=23%  Similarity=0.218  Sum_probs=124.0

Q ss_pred             hHHhhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          133 GRSRQRILTFAAKRYANAIE--------------------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~--------------------------~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      .+...++++.|+.+|++++.                          ++|.-+.--...|+.++..|+             
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd-------------  373 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD-------------  373 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC-------------
Confidence            34555666666666666654                          345556666777888888888             


Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                       |..|+..|.+||..+|+++..|.|+|.||.+    +|.+..|+       +.++++++++|++..+|..-|.++..+.+
T Consensus       374 -y~~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  374 -YPEAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             -HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999999    99999999       68999999999999999999999999999


Q ss_pred             cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      |          +.|++.|.++++++|++.++...+..|+..+
T Consensus       442 y----------dkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  442 Y----------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             H----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9          9999999999999999999999999998864

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.29  E-value=5.9e-11  Score=121.19  Aligned_cols=107  Identities=17%  Similarity=0.163  Sum_probs=101.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      .+..|+|++|+.+|.++|+++|+++.+|+++|.+|..+|+              +++|+..+++++.++|++..+|+++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~lg   77 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRKG   77 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            4678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      .+|..    +|++++|+       ..|+++++++|++..+...++.+...+.
T Consensus        78 ~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         78 TACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999    99999999       6999999999999999999988877664

>TIGR00540 hemY_coli hemY protein

Probab=99.28  E-value=7.3e-10  Score=115.60  Aligned_cols=198  Identities=16%  Similarity=0.059  Sum_probs=152.3

Q ss_pred             hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC----
Q 010864          112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS----  176 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~----  176 (498)
                      ..++.+.+..++.++....           ...+...|+++.|...+++.++..|+++.++..++.+|...|++..    
T Consensus       130 ~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~  209 (409)
T TIGR00540       130 QRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI  209 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4578888888888764432           1223447999999999999999999999999999999999998410    


Q ss_pred             ---------CCCCCC------chhhhH-----HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          177 ---------LDSTSP------SKDALL-----EEACKKYDEATRLCP----TLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       177 ---------~~~~~~------~~~~~~-----~~A~~~~~~Al~l~p----~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                               .++...      ...+.+     +++.+.+.++....|    ++...+..++..+..    .|++++|++.
T Consensus       210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~  285 (409)
T TIGR00540       210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEI  285 (409)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHH
Confidence                     000000      011112     222335666666666    478888888888888    9999999977


Q ss_pred             HHH-----------------------------HHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          233 WKQ-----------------------------ATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       233 ~~~-----------------------------Al~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                      .++                             +++.++++++.+|+++  ..+..+|.++.+.|++          ++|.
T Consensus       286 l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~A~  355 (409)
T TIGR00540       286 IFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IEAA  355 (409)
T ss_pred             HHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HHHH
Confidence            633                             5667888889999999  8999999999999999          9999


Q ss_pred             HHHH--HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          282 SKFR--AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       282 ~~~~--~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      ++|+  ++++.+|+... +..+|.++..+|+                   ..+|..+|++++.+
T Consensus       356 ~~le~a~a~~~~p~~~~-~~~La~ll~~~g~-------------------~~~A~~~~~~~l~~  399 (409)
T TIGR00540       356 DAFKNVAACKEQLDAND-LAMAADAFDQAGD-------------------KAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHHH
Confidence            9999  68888998665 5699999999999                   78888888887653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.28  E-value=1.3e-10  Score=118.63  Aligned_cols=161  Identities=14%  Similarity=0.054  Sum_probs=135.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ....|++++|+..++++++.+|++..++.. +..+...|+.          .+....+.+.+......+|....++..+|
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------SGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------ccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            456899999999999999999999988887 7777777761          01134444444444456788888899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    +|++++|+       ..++++++++|++..++..+|.++.+.|++          ++|+.++++++...|.
T Consensus       122 ~~~~~----~G~~~~A~-------~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~  180 (355)
T cd05804         122 FGLEE----AGQYDRAE-------EAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCC
Confidence            99999    99999999       699999999999999999999999999999          9999999999999874


Q ss_pred             CH----HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          294 FH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       294 ~~----~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      .+    ..+..+|.++..+|+                   +.+|..+|++++...|
T Consensus       181 ~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~~~~~~~~~~  217 (355)
T cd05804         181 SSMLRGHNWWHLALFYLERGD-------------------YEAALAIYDTHIAPSA  217 (355)
T ss_pred             CcchhHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHhcccc
Confidence            33    346689999999999                   8999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.27  E-value=6.3e-10  Score=120.03  Aligned_cols=196  Identities=12%  Similarity=0.070  Sum_probs=141.6

Q ss_pred             hhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      .+++..|+.+|..++...           +.++.++++.+.|+..|.++++++|.+..++..||.+-....+.       
T Consensus       177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-------  249 (1018)
T KOG2002|consen  177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-------  249 (1018)
T ss_pred             cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-------
Confidence            466788889998877776           34567889999999999999999999999999999888776551       


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-----------------------------
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL-----------------------------  232 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~-----------------------------  232 (498)
                          ..+..+...+.++...+++++.+.+.|+.-++.    .|+|..+..+                             
T Consensus       250 ----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G  321 (1018)
T KOG2002|consen  250 ----DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG  321 (1018)
T ss_pred             ----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence                225556666666666665555544444444443    3333333321                             


Q ss_pred             -HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          233 -WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       233 -~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                       |++|..+|.++++.++++ .-.++.||..|...|++          +.|+.+|++.+...|++.+...-||.+|...++
T Consensus       322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~  391 (1018)
T KOG2002|consen  322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCLYAHSAK  391 (1018)
T ss_pred             cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence             122337888888888887 77788888888888888          999999999999999999999999999988852


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .               .+..+.|..+..++++..|.+.
T Consensus       392 ~---------------~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  392 K---------------QEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             h---------------hHHHHHHHHHHHHHHhcccccH
Confidence            1               1124556666666666666655

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=4.6e-10  Score=118.52  Aligned_cols=165  Identities=26%  Similarity=0.283  Sum_probs=126.7

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 010864          138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAI  216 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~~lg~~~  216 (498)
                      ....+++..++++++.+|.|+.+.+.++.-|..+++              ++.|....++++++++ +++.+|..|+.++
T Consensus       458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvl  523 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVL  523 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            445678888888888888888888888888888888              8888888888888844 4677888888888


Q ss_pred             HHHHHHcCCHHHHHHH-----------------------------------------H----------------------
Q 010864          217 SDRAKMRGRTKEAEEL-----------------------------------------W----------------------  233 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~-----------------------------------------~----------------------  233 (498)
                      ..    .+++.+|+..                                         |                      
T Consensus       524 Sa----~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l  599 (799)
T KOG4162|consen  524 SA----QKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL  599 (799)
T ss_pred             hh----hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence            87    7777777633                                         1                      


Q ss_pred             --------------------------------------------------------------------------------
Q 010864          234 --------------------------------------------------------------------------------  233 (498)
Q Consensus       234 --------------------------------------------------------------------------------  233 (498)
                                                                                                      
T Consensus       600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~  679 (799)
T KOG4162|consen  600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI  679 (799)
T ss_pred             ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence                                                                                            


Q ss_pred             ---------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH--HHHHHHHh
Q 010864          234 ---------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS--KFRAAIQL  290 (498)
Q Consensus       234 ---------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~--~~~~Al~l  290 (498)
                                           .+|...|.-|+.+||+++.....+|.++.+.|+.          .-|..  .+..|+++
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRL  749 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhh
Confidence                                 1244555555566666666666666666666654          55655  88999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      +|.++++|++||.++..+|+                   ..+|.+||..|+.+.+.+++
T Consensus       750 dp~n~eaW~~LG~v~k~~Gd-------------------~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  750 DPLNHEAWYYLGEVFKKLGD-------------------SKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCCCHHHHHHHHHHHHHccc-------------------hHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999998                   88999999999999988774

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.22  E-value=3.5e-10  Score=103.03  Aligned_cols=130  Identities=22%  Similarity=0.199  Sum_probs=105.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 010864          138 RILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNW  212 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~l  212 (498)
                      +.|..+...+...++.++.+  ..+|+++|.++..+|+              +++|+..|++++.+.|+   .+.+++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~~~l   78 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYILYNI   78 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            34555556665555555555  6778999999999999              99999999999999776   34589999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-------CcchHHhhhhhHHHHHHHHH
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-------AIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-------~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      |.++..    +|++++|+       ..|++++.++|.+...++++|.++..+|       ++   .....++++|+.+|+
T Consensus        79 g~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~---~~A~~~~~~a~~~~~  144 (168)
T CHL00033         79 GLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS---EIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH---HHHHHHHHHHHHHHH
Confidence            999999    99999999       6889999999999999999999999554       44   333455678888888


Q ss_pred             HHHHhcCCCH
Q 010864          286 AAIQLQFDFH  295 (498)
Q Consensus       286 ~Al~l~P~~~  295 (498)
                      +++..+|++.
T Consensus       145 ~a~~~~p~~~  154 (168)
T CHL00033        145 QAIALAPGNY  154 (168)
T ss_pred             HHHHhCcccH
Confidence            8888888654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.20  E-value=8.2e-10  Score=101.04  Aligned_cols=128  Identities=22%  Similarity=0.281  Sum_probs=107.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      +..+.+++++|.++...|+              +++|+.+|++++++.|+.   ..+++++|.++..    .|++++|+ 
T Consensus        32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-   92 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL-   92 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence            4567789999999999999              999999999999997763   5689999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                            ..|++++..+|++..++.++|.++..+|+...+    ......+++|+.+++++++++|++   +..++..+..
T Consensus        93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~  163 (172)
T PRK02603         93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT  163 (172)
T ss_pred             ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence                  688999999999999999999999999986433    234556788888888888889887   5555666665


Q ss_pred             cch
Q 010864          308 LAE  310 (498)
Q Consensus       308 ~g~  310 (498)
                      .|+
T Consensus       164 ~~~  166 (172)
T PRK02603        164 TGR  166 (172)
T ss_pred             cCc
Confidence            554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.19  E-value=8.7e-10  Score=100.43  Aligned_cols=117  Identities=21%  Similarity=0.193  Sum_probs=99.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      +..+|++++|+..|++++.+.|+   .+.+|+++|.+|...|+              +++|+..|++++.++|.+...++
T Consensus        45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHH
Confidence            45689999999999999999776   34689999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          211 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       211 ~lg~~~~~~---~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ++|.++..+   +..+|++++|+..+++|+..|++++..+|.+.   ...+..+...|++
T Consensus       111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033        111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence            999999822   11289999999999999999999999999765   3334444445544

>PRK11906 transcriptional regulator; Provisional

Probab=99.17  E-value=1.7e-09  Score=110.14  Aligned_cols=171  Identities=10%  Similarity=-0.023  Sum_probs=137.6

Q ss_pred             ccHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          138 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       138 g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...+.|..+|.+++   +++|+++.+|..++.+++...-    .+.+. ......+|...-++|++++|+++.++..+|.
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~  346 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45678999999999   9999999999999999998743    11122 5566899999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ++..    .++++.|.       ..|++|+.++|+++.+|+..|.++...|+.          ++|+..+++|++++|.-
T Consensus       347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence            9998    99999999       799999999999999999999999999999          99999999999999986


Q ss_pred             HHHHHH-HHH-HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          295 HRAIYN-LGT-VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       295 ~~a~~~-Lg~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      ..+-.. +-. .|+..+                    ++.++..|-+-.+.........+.+
T Consensus       406 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  447 (458)
T PRK11906        406 RKAVVIKECVDMYVPNP--------------------LKNNIKLYYKETESESHRVIIDNIL  447 (458)
T ss_pred             hHHHHHHHHHHHHcCCc--------------------hhhhHHHHhhccccccchhhHHHHH
Confidence            554333 222 455444                    4666666665544444433333333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=3.1e-09  Score=105.96  Aligned_cols=170  Identities=14%  Similarity=0.041  Sum_probs=155.7

Q ss_pred             hhhcHHHHHHHHHHhhhcchh----------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..|++++|...|..+++.+..          .+..+|++++|+++|-+.-.+--++++.++.++.+|..+.+        
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led--------  573 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED--------  573 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC--------
Confidence            357888999999888887733          24568999999999999988888999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---------------------------H
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW---------------------------K  234 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~---------------------------~  234 (498)
                            ..+||+.|.++..+-|+++..+..||.+|-+    .|+-.+|.+++                           +
T Consensus       574 ------~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e  643 (840)
T KOG2003|consen  574 ------PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE  643 (840)
T ss_pred             ------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence                  9999999999999999999999999999999    99999998763                           7


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      +++.+|++|--+.|+.......++.|+.+.|+|          +.|...|+..-+.-|.+.+.+.-|-.+.-.+|
T Consensus       644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgny----------qka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNY----------QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            899999999999999999999999999999999          99999999999999999999998888888888

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.14  E-value=1.6e-09  Score=110.51  Aligned_cols=162  Identities=15%  Similarity=-0.010  Sum_probs=136.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      ...|+.+.+...|.++....|.+   .+..+..|.+++..|+              +++|++.++++++.+|++..++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804          17 LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGD--------------LPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHH
Confidence            34678888899999998888754   5678889999999999              999999999999999999988876


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                       +..+..    .|++..+.....   +.+......+|....++.++|.++..+|++          ++|+..|+++++++
T Consensus        83 -~~~~~~----~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~  144 (355)
T cd05804          83 -HLGAFG----LGDFSGMRDHVA---RVLPLWAPENPDYWYLLGMLAFGLEEAGQY----------DRAEEAARRALELN  144 (355)
T ss_pred             -hHHHHH----hcccccCchhHH---HHHhccCcCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhC
Confidence             667766    655554443222   233334567788889999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      |++..++..+|.+|+..|+                   +++|..++.+++...|..
T Consensus       145 p~~~~~~~~la~i~~~~g~-------------------~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         145 PDDAWAVHAVAHVLEMQGR-------------------FKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             CCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhhhccCCC
Confidence            9999999999999999999                   899999999999988743

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=99.14  E-value=4.4e-09  Score=107.13  Aligned_cols=156  Identities=13%  Similarity=0.054  Sum_probs=131.3

Q ss_pred             HHhCCCCH---HHH----HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHH
Q 010864          151 IERNPEDY---DAL----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLHDAFYNWAIAISDRA  220 (498)
Q Consensus       151 l~~~P~~~---~a~----~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al---~l~p~~~~a~~~lg~~~~~~~  220 (498)
                      ...-|.+.   ++|    +.+|......+.           ....++|+..|.+|+   .++|+++.+|..++.++..++
T Consensus       241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t-----------~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~  309 (458)
T PRK11906        241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFT-----------PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA  309 (458)
T ss_pred             hcCCCCCcccccchhhHHHHHHHHHhhccC-----------HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH
Confidence            34446665   555    667777666554           234889999999999   999999999999999998854


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                      .+ |-.+ ....-.+|+...++|++++|+++.++..+|.++...|++          +.|+..|++|+.++|+++.+|+.
T Consensus       310 ~~-g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~  377 (458)
T PRK11906        310 LH-GKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYY  377 (458)
T ss_pred             Hh-cCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHH
Confidence            33 2222 333446677899999999999999999999999999999          99999999999999999999999


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .|.++...|+                   ..+|...++++++++|-..
T Consensus       378 ~~~~~~~~G~-------------------~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        378 RALVHFHNEK-------------------IEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHHcCC-------------------HHHHHHHHHHHhccCchhh
Confidence            9999999999                   8999999999999999765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.13  E-value=2.1e-09  Score=114.39  Aligned_cols=132  Identities=19%  Similarity=0.145  Sum_probs=114.8

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~p~~~~a~~~lg~  214 (498)
                      .+.+..|+.+|++|++++|+++.+|..++.+|.....+      .......+.++.....+++.+  +|.++.+|..+|.
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~------~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~  428 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ------QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAV  428 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence            35688999999999999999999999999998776441      112234577888888888775  7788899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      .+..    .|++++|.       ..|++|+.++| +..+|..+|.++...|++          ++|+..|++|++++|.+
T Consensus       429 ~~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        429 QALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCC
Confidence            9988    99999999       79999999999 589999999999999999          99999999999999998


Q ss_pred             HH
Q 010864          295 HR  296 (498)
Q Consensus       295 ~~  296 (498)
                      +.
T Consensus       487 pt  488 (517)
T PRK10153        487 NT  488 (517)
T ss_pred             ch
Confidence            85

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.12  E-value=1.7e-09  Score=91.63  Aligned_cols=107  Identities=24%  Similarity=0.297  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      +++++.+|..+...|+              +++|++.|.+++..+|++   ..+++.+|.++..    .|++++|+    
T Consensus         2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~----   59 (119)
T TIGR02795         2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA----   59 (119)
T ss_pred             cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence            4678999999999999              999999999999999886   5789999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          235 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                         ..|++++..+|++   ..++.++|.++..+|++          ++|+.+|+++++..|++..+..
T Consensus        60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence               6888888888875   68899999999999999          9999999999999999876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7.3e-10  Score=109.69  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=121.8

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYD------------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA  198 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~------------a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A  198 (498)
                      +.+++...+.+.|+..|+++|.++|++.+            .|...|+-.+..|.              |.+|.++|..|
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~--------------y~~A~E~Ytea  275 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN--------------YRKAYECYTEA  275 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc--------------hhHHHHHHHHh
Confidence            34456678999999999999999998743            46677777777777              99999999999


Q ss_pred             HHhCCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          199 TRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       199 l~l~p~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                      |.++|++    +..|.|++.+...    +|+..+|+       ..++.|+.+||.+..++...|.++..++++       
T Consensus       276 l~idP~n~~~naklY~nra~v~~r----Lgrl~eai-------sdc~~Al~iD~syikall~ra~c~l~le~~-------  337 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI-------SDCNEALKIDSSYIKALLRRANCHLALEKW-------  337 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcc----cCCchhhh-------hhhhhhhhcCHHHHHHHHHHHHHHHHHHHH-------
Confidence            9999984    5689999999999    99999999       699999999999999999999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                         ++|++.|++|++...+ ......|..+-..+
T Consensus       338 ---e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  338 ---EEAVEDYEKAMQLEKD-CEIRRTLREAQLAL  367 (486)
T ss_pred             ---HHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence               9999999999999776 55544454444433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=5.5e-09  Score=103.42  Aligned_cols=189  Identities=10%  Similarity=0.041  Sum_probs=160.1

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC--------------------CCCCCCchhhhHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS--------------------LDSTSPSKDALLEE  190 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~--------------------~~~~~~~~~~~~~~  190 (498)
                      +.+++..|++++|+..|+++..+||.+..++-..|.++...|+.-.                    ..++-.....++..
T Consensus       239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence            3457778999999999999999999999888888888877776310                    01112234467999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      |+.+-+|++.++|++..++...|.++..    +|+..+|+       -.|+.|..+.|.....|..|-.+|...|++.+|
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~-------IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAV-------IAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHH-------HHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            9999999999999999999999999999    99999999       799999999999999999999999999999877


Q ss_pred             H--------------------------hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010864          271 R--------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV  324 (498)
Q Consensus       271 ~--------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~  324 (498)
                      .                          ....--++|.++++++++++|++..+.+.++.++...|+              
T Consensus       388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~--------------  453 (564)
T KOG1174|consen  388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP--------------  453 (564)
T ss_pred             HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc--------------
Confidence            1                          112234788999999999999999999999999988888              


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          325 SPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       325 ~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                           +..++..+++.+...||...
T Consensus       454 -----~~D~i~LLe~~L~~~~D~~L  473 (564)
T KOG1174|consen  454 -----TKDIIKLLEKHLIIFPDVNL  473 (564)
T ss_pred             -----cchHHHHHHHHHhhccccHH
Confidence                 78889999999999998873

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.4e-09  Score=103.19  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=111.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864          138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  217 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~  217 (498)
                      ...+.-+...+.-|..||+|.+-|..||.+|..+|+              +..|...|.+|+++.|++++.+..+|.++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            346778888999999999999999999999999999              999999999999999999999999999988


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                      ... ......++.       ..+++++.+||++..+++.||..+.+.|+|          ++|+..++..+...|.+.
T Consensus       202 ~~a-~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         202 YQA-GQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             Hhc-CCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCCC
Confidence            721 011233344       799999999999999999999999999999          999999999999877553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=6.9e-09  Score=100.01  Aligned_cols=171  Identities=12%  Similarity=0.063  Sum_probs=138.0

Q ss_pred             hhhhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC
Q 010864          111 QLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS  176 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~  176 (498)
                      +..|+.+.|+.+...+...-              +..++..|-+|.|...|.......---..++-.|-.+|....+   
T Consensus        80 RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---  156 (389)
T COG2956          80 RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---  156 (389)
T ss_pred             HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---
Confidence            44577888888777666544              3446778999999999998877665667789999999999998   


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       177 ~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                                 +++||+.-++.+++.+....  ..++..|+.    +.+-..+...+++|+..+.+|++.||++..+-..
T Consensus       157 -----------W~KAId~A~~L~k~~~q~~~--~eIAqfyCE----LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         157 -----------WEKAIDVAERLVKLGGQTYR--VEIAQFYCE----LAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             -----------HHHHHHHHHHHHHcCCccch--hHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence                       99999999999999887432  234444444    3333344444555558999999999999999999


Q ss_pred             HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchh
Q 010864          257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED  311 (498)
Q Consensus       257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~  311 (498)
                      +|.+....|+|          +.|++.++.+++.+|++ +++...|-.||..+|+.
T Consensus       220 lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         220 LGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             hhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            99999999999          99999999999999998 57889999999999984

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.09  E-value=5e-09  Score=115.87  Aligned_cols=206  Identities=11%  Similarity=0.034  Sum_probs=137.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCC----CCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD----STSPSKDALLEEACKKYDEATRLCPTLHDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~----~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~  209 (498)
                      +...+++++|+..++.+++.+|+...+|+.+|.++++.++.-...    ........++ .++++|...+...+++-.++
T Consensus        41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence            445899999999999999999999999999999999988720000    0011122234 56666666666677777999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------HhhhhhHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----------REKQTIVRT  279 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----------~~~~~~~~~  279 (498)
                      +.||.||.+    +|+.++|.       ..|+++++++|+|+.+++|+|..|... +.++|          +-..+.+..
T Consensus       120 ~~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~  187 (906)
T PRK14720        120 RTLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG  187 (906)
T ss_pred             HHHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence            999999999    99999999       799999999999999999999999999 88333          111233444


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHH-HcchhHHhccCCCCC--CCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          280 AISKFRAAIQLQFDFHRAIYNLGTVLY-GLAEDTLRTGGTVNP--REVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       280 Ai~~~~~Al~l~P~~~~a~~~Lg~~~~-~~g~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      +...+.+.+..+|++.+.+..+-.... ..|..  +....+.+  .+....+.|...+.+++++++++|.|.-....+
T Consensus       188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l  263 (906)
T PRK14720        188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT--RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREEL  263 (906)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHH
Confidence            444444444445665554333222211 11200  00000000  012233458899999999999999998444433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.09  E-value=6e-09  Score=116.19  Aligned_cols=164  Identities=10%  Similarity=-0.013  Sum_probs=138.6

Q ss_pred             hhhcHHHHHHHHHHhhhcchh----------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..|++..|++.+.+++..+..          .+...|++++|+.++++++.-+|.....+..+|.+|..+|+        
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd--------  117 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR--------  117 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------
Confidence            457788899999888877632          23567999999999999994445555566666889999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            +++|++.|+++++.+|++..++..++.++.+    .++.++|+       ..+++++..+|.+... ..++.++
T Consensus       118 ------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        118 ------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHHHhcccCcchHHH-HHHHHHH
Confidence                  9999999999999999999999999999999    99999999       6999999999986554 5556666


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ...++.          .+|+..|+++++++|++..++..+..++...|-.
T Consensus       180 ~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        180 RATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             HhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            666666          7799999999999999999999999999998853

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.09  E-value=1.9e-08  Score=102.16  Aligned_cols=121  Identities=20%  Similarity=0.071  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      |....++|..+..++..|+              +++|...++..++..|+|+..+...+.++..    .++.++|.    
T Consensus       303 ~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~----  360 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI----  360 (484)
T ss_pred             ccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH----
Confidence            4555566666666666666              6666666666666666666666666666666    66666666    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                         +.+++++.++|+....+.++|.+|.+.|++          ++|+..++..+.-+|+++..|..|+.+|..+|+
T Consensus       361 ---e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         361 ---ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             ---HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence               456666666666666666666666666666          566666666666666666666666666666665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.08  E-value=4.9e-09  Score=111.62  Aligned_cols=156  Identities=19%  Similarity=0.107  Sum_probs=125.3

Q ss_pred             HhCCCCHHHH--HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864          152 ERNPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       152 ~~~P~~~~a~--~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      ..-|.+.++|  +..|.-|...++           .+.+.+|+.+|++|++++|+++.+|-.++.++..    ...+...
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~  395 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPL  395 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCc
Confidence            3446777765  556666655433           3448899999999999999999999999998876    3222211


Q ss_pred             -HHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          230 -EELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY  306 (498)
Q Consensus       230 -~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~  306 (498)
                       ...+.++....++++.+  +|.++.++.-+|..+...|++          ++|+..|++|++++|+ ..+|+.+|.++.
T Consensus       396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~ps-~~a~~~lG~~~~  464 (517)
T PRK10153        396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEMS-WLNYVLLGKVYE  464 (517)
T ss_pred             cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence             12345566777777774  788889999999999999999          9999999999999995 889999999999


Q ss_pred             HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       307 ~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                      ..|+                   +.+|++.|.+|+.++|.++.|..
T Consensus       465 ~~G~-------------------~~eA~~~~~~A~~L~P~~pt~~~  491 (517)
T PRK10153        465 LKGD-------------------NRLAADAYSTAFNLRPGENTLYW  491 (517)
T ss_pred             HcCC-------------------HHHHHHHHHHHHhcCCCCchHHH
Confidence            9999                   99999999999999999885443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=1.2e-08  Score=103.44  Aligned_cols=106  Identities=21%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             hccHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 010864          137 QRILTFAAKRYANA------------IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT  204 (498)
Q Consensus       137 ~g~~~~A~~~~~~a------------l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  204 (498)
                      .++|..|+..|+..            +...|+|+..+-..+.++.+.++              .++|++.+++++.++|+
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~  372 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPN  372 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCC
Confidence            35666677766653            23557777777777777777777              77777777777777777


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ..-.++++|.+|.+    .|++++|+       ..+++.+..+|+++..|..|+.+|..+|+.
T Consensus       373 ~~~l~~~~a~all~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         373 SPLLQLNLAQALLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             ccHHHHHHHHHHHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            77777777777777    77777666       577777777777777777777777777776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.07  E-value=2.4e-09  Score=84.95  Aligned_cols=99  Identities=33%  Similarity=0.474  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  239 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~  239 (498)
                      +++++|.++...|+              +++|+..|+++++..|++..+++.+|.++..    .|++++|+       ..
T Consensus         2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~   56 (100)
T cd00189           2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED   56 (100)
T ss_pred             HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence            58899999999999              9999999999999999999999999999999    88888888       68


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       240 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      |++++...|.+..++..+|.++...|++          ++|...++++++..|+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~  100 (100)
T cd00189          57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999          9999999999988774

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.06  E-value=6e-09  Score=95.30  Aligned_cols=116  Identities=22%  Similarity=0.299  Sum_probs=97.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      +...|++++|+.+|++++.+.|+.   ..+++++|.++..+|+              +++|+..|++++.++|++..++.
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------------HDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHH
Confidence            466899999999999999987764   5789999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          211 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       211 ~lg~~~~~~---~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      ++|.++..+   ....++++.|+..|++|+.++++++.++|++   +...+..+...|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            999999871   1113457888888899999999999999987   4455555555544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.06  E-value=7.4e-10  Score=84.95  Aligned_cols=68  Identities=32%  Similarity=0.508  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK  234 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~  234 (498)
                      +++.+|+.+|.+++..|+              +++|+..|+++++++|+++.+|+++|.++..    +| ++.+|+    
T Consensus         1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~----   58 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI----   58 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence            368899999999999999              9999999999999999999999999999999    99 688888    


Q ss_pred             HHHHHHHHHHhcCC
Q 010864          235 QATKNYEKAVQLNW  248 (498)
Q Consensus       235 ~Al~~~~~Al~l~P  248 (498)
                         ..|+++++++|
T Consensus        59 ---~~~~~al~l~P   69 (69)
T PF13414_consen   59 ---EDFEKALKLDP   69 (69)
T ss_dssp             ---HHHHHHHHHST
T ss_pred             ---HHHHHHHHcCc
Confidence               68899998887

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=2.4e-09  Score=112.67  Aligned_cols=194  Identities=15%  Similarity=0.145  Sum_probs=150.7

Q ss_pred             hcHHHHHHHHHHhhhcc--hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CcCCCC----
Q 010864          114 EQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA---------DNVSLD----  178 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---------~~~~~~----  178 (498)
                      |-...|..++++....+  -.+|...|+..+|.....+-++ .|.++..|..+|.+.....         +.....    
T Consensus       412 GitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~  490 (777)
T KOG1128|consen  412 GITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRS  490 (777)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHh
Confidence            34456777777766555  3457778888899888888888 7778888888887763221         100000    


Q ss_pred             -CCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          179 -STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       179 -~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                       +......++|+++.++++..++++|-....||++|.+..+    .++++.|.       ++|.+++.++|++..+|+|+
T Consensus       491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av-------~aF~rcvtL~Pd~~eaWnNl  559 (777)
T KOG1128|consen  491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV-------KAFHRCVTLEPDNAEAWNNL  559 (777)
T ss_pred             hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------HHHHHHhhcCCCchhhhhhh
Confidence             0012235679999999999999999999999999999888    88888877       68889999999999999999


Q ss_pred             HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHH
Q 010864          258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  337 (498)
Q Consensus       258 g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~  337 (498)
                      ..+|.++++-          .+|...+++|++.+-++..+|-|.-.+....|.                   +++|+..|
T Consensus       560 s~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-------------------~eda~~A~  610 (777)
T KOG1128|consen  560 STAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-------------------FEDAIKAY  610 (777)
T ss_pred             hHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-------------------HHHHHHHH
Confidence            9999999988          889999999999888888888888888888888                   89999999


Q ss_pred             HHHHhcCCCHH
Q 010864          338 AAAHALKPSYS  348 (498)
Q Consensus       338 ~~Al~l~p~~~  348 (498)
                      .+.+.+..+..
T Consensus       611 ~rll~~~~~~~  621 (777)
T KOG1128|consen  611 HRLLDLRKKYK  621 (777)
T ss_pred             HHHHHhhhhcc
Confidence            99888755443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.06  E-value=7.1e-09  Score=112.00  Aligned_cols=164  Identities=16%  Similarity=0.068  Sum_probs=143.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .++...|...|-+++.+++..+.+|.-+|.+|...-+              ...|.++|++|.++++.++.++-..+..|
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adty  536 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTY  536 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence            4558889999999999999999999999999999888              99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          217 SDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~-----------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ..    ..++++|....                             -+|+..|+.|++.+|++..+|..+|.+|...|+|
T Consensus       537 ae----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry  612 (1238)
T KOG1127|consen  537 AE----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY  612 (1238)
T ss_pred             hc----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence            99    88888887542                             3488899999999999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                                ..|++.|.+|..++|.+--+.|-.+.....+|+                   |..+...+...+.-....
T Consensus       613 ----------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-------------------Ykeald~l~~ii~~~s~e  663 (1238)
T KOG1127|consen  613 ----------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-------------------YKEALDALGLIIYAFSLE  663 (1238)
T ss_pred             ----------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHHH
Confidence                      999999999999999999999999999999998                   666666655555444333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.06  E-value=9.9e-09  Score=110.32  Aligned_cols=133  Identities=21%  Similarity=0.156  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      ..+...|+.++..|+              +++|+..+.++++.+|.+..+|+.||.+|..    +|+..++.       .
T Consensus       140 ~~ll~eAN~lfarg~--------------~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l-------~  194 (895)
T KOG2076|consen  140 RQLLGEANNLFARGD--------------LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKAL-------N  194 (895)
T ss_pred             HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHH-------H
Confidence            456677888889999              9999999999999999999999999999999    99999998       5


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  318 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~  318 (498)
                      ..-.|-.++|++...|..++....++|.+          .+|+-+|.+||+.+|.+....++...+|.++|+        
T Consensus       195 ~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--------  256 (895)
T KOG2076|consen  195 FWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--------  256 (895)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--------
Confidence            77778899999999999999999999999          999999999999999999999999999999999        


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          319 VNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       319 ~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                                 +..|+..|.+++.+.|
T Consensus       257 -----------~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  257 -----------LKRAMETFLQLLQLDP  272 (895)
T ss_pred             -----------HHHHHHHHHHHHhhCC
Confidence                       8999999999999999

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=5.9e-09  Score=100.51  Aligned_cols=128  Identities=19%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      ...++-+.-++.-|..||++.+-|..||.+|+.    +|++..|.       ..|++|+++.|++++.+..+|.++....
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            347888889999999999999999999999999    99999999       7999999999999999999999988776


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      .-       ..-.++...|+++++++|++..+.+.||..++..|+                   |.+|+..++..+++.|
T Consensus       205 ~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------------------~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         205 GQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-------------------YAEAAAAWQMLLDLLP  258 (287)
T ss_pred             CC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHhcCC
Confidence            43       233789999999999999999999999999999999                   9999999999999998


Q ss_pred             CHHHH
Q 010864          346 SYSVY  350 (498)
Q Consensus       346 ~~~~~  350 (498)
                      .+.-.
T Consensus       259 ~~~~r  263 (287)
T COG4235         259 ADDPR  263 (287)
T ss_pred             CCCch
Confidence            87733

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.04  E-value=8.2e-10  Score=84.69  Aligned_cols=68  Identities=32%  Similarity=0.447  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CcchHHhhhhhHHHHHH
Q 010864          204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS  282 (498)
Q Consensus       204 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~a~~~~~~~~~Ai~  282 (498)
                      +++..|+++|.++..    .|++++|+       .+|.++++++|+++.+++++|.++..+| ++          ++|+.
T Consensus         1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred             CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence            367899999999999    99999999       7999999999999999999999999999 79          99999


Q ss_pred             HHHHHHHhcC
Q 010864          283 KFRAAIQLQF  292 (498)
Q Consensus       283 ~~~~Al~l~P  292 (498)
                      .|+++++++|
T Consensus        60 ~~~~al~l~P   69 (69)
T PF13414_consen   60 DFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHcCc
Confidence            9999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.04  E-value=4.9e-09  Score=88.78  Aligned_cols=109  Identities=19%  Similarity=0.185  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      .+.++.+|..+..    .|++++|+       ..|++++..+|++   ..+++.+|.++...|++          ++|+.
T Consensus         2 ~~~~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~   60 (119)
T TIGR02795         2 EEAYYDAALLVLK----AGDYADAI-------QAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAK   60 (119)
T ss_pred             cHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHH
Confidence            4678999999999    99999999       6888888888876   67999999999999999          99999


Q ss_pred             HHHHHHHhcCCC---HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          283 KFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       283 ~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      .|++++...|++   +.+++++|.++..+|+                   +.+|..+|.+++...|++.....++
T Consensus        61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGD-------------------KEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999998885   6789999999999998                   8999999999999999988665553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.04  E-value=1.2e-08  Score=106.31  Aligned_cols=151  Identities=16%  Similarity=0.097  Sum_probs=139.9

Q ss_pred             HHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 010864          121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR  200 (498)
Q Consensus       121 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~  200 (498)
                      .+|.+++..     +..++|...+...++.|...|++.+.+...|..+..+|+              -++|......+++
T Consensus         9 ~lF~~~lk~-----yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr   69 (700)
T KOG1156|consen    9 ALFRRALKC-----YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLR   69 (700)
T ss_pred             HHHHHHHHH-----HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhc
Confidence            345555444     557899999999999999999999999999999999999              9999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                      .++....+|.-+|.++..    ..+|++|+       ++|+.|+.++|+|.+.|..++.+..+++++          +-.
T Consensus        70 ~d~~S~vCwHv~gl~~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~  128 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGY  128 (700)
T ss_pred             cCcccchhHHHHHHHHhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhH
Confidence            999999999999999999    88888888       799999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ...-.+-+++.|.....|...+.++.-.|+.
T Consensus       129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen  129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999874

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.02  E-value=4e-09  Score=116.67  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=116.7

Q ss_pred             HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864          151 IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE  230 (498)
Q Consensus       151 l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~  230 (498)
                      ...+|.+.++|..|...|...++              +++|+..++.+++.+|+...+|+.+|.++..    .+++.++.
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~--------------~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~   85 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENL--------------TDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSN   85 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhh
Confidence            35679999999999999999999              9999999999999999999999999999998    88887776


Q ss_pred             HH-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          231 EL-----------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       231 ~~-----------~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                      -.           | .++.+|...+...+.+-.+++.||.||.++|+.          ++|...|+++++++|+++.+++
T Consensus        86 lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLN  154 (906)
T PRK14720         86 LLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVK  154 (906)
T ss_pred             hhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHH
Confidence            32           2 455666666666778889999999999999999          9999999999999999999999


Q ss_pred             HHHHHHHHcch
Q 010864          300 NLGTVLYGLAE  310 (498)
Q Consensus       300 ~Lg~~~~~~g~  310 (498)
                      |+|..|... +
T Consensus       155 n~AY~~ae~-d  164 (906)
T PRK14720        155 KLATSYEEE-D  164 (906)
T ss_pred             HHHHHHHHh-h
Confidence            999999988 5

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=1.3e-08  Score=107.86  Aligned_cols=130  Identities=22%  Similarity=0.149  Sum_probs=120.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +.+.+..++|..++.++-.++|..+..|+..|.++...|.              +.+|.+.|..|+.++|++..+...+|
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------------~~EA~~af~~Al~ldP~hv~s~~Ala  725 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------------LEEAKEAFLVALALDPDHVPSMTALA  725 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------------hHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            5667888999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    .|+..-|..     ......++++||.++++|+++|.++..+|+.          ++|.++|..|+++.+.
T Consensus       726 ~~lle----~G~~~la~~-----~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~----------~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  726 ELLLE----LGSPRLAEK-----RSLLSDALRLDPLNHEAWYYLGEVFKKLGDS----------KQAAECFQAALQLEES  786 (799)
T ss_pred             HHHHH----hCCcchHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHccch----------HHHHHHHHHHHhhccC
Confidence            99999    998777771     1288999999999999999999999999999          9999999999999887


Q ss_pred             CHH
Q 010864          294 FHR  296 (498)
Q Consensus       294 ~~~  296 (498)
                      +|.
T Consensus       787 ~PV  789 (799)
T KOG4162|consen  787 NPV  789 (799)
T ss_pred             CCc
Confidence            653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.7e-08  Score=97.32  Aligned_cols=165  Identities=17%  Similarity=0.198  Sum_probs=126.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-----HHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFY  210 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-----~~a~~  210 (498)
                      -.++-++|++.|...++.+|...+++..||++|...|.              .++||..-+..+ ..|+.     ..+.+
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE--------------vDRAIRiHQ~L~-~spdlT~~qr~lAl~  111 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE--------------VDRAIRIHQTLL-ESPDLTFEQRLLALQ  111 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch--------------HHHHHHHHHHHh-cCCCCchHHHHHHHH
Confidence            35677889999999999999999999999999999998              888887665444 45553     34667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH---------------------------HHHHHHHHHHHhcCCCC-----HHHHHHHH
Q 010864          211 NWAIAISDRAKMRGRTKEAEELW---------------------------KQATKNYEKAVQLNWNS-----PQALNNWG  258 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~---------------------------~~Al~~~~~Al~l~P~~-----~~a~~~lg  258 (498)
                      .||.-|+.    .|-++.|++.|                           ++|+..-++...+.++.     ++.+.-|+
T Consensus       112 qL~~Dym~----aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         112 QLGRDYMA----AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHHHHHHH----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            77777777    77777777543                           34555555555555542     22333333


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  338 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  338 (498)
                      ..+..          ..+++.|+..+.+|++.+|+..++-..+|.++...|+                   |.+|++.++
T Consensus       188 q~~~~----------~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-------------------y~~AV~~~e  238 (389)
T COG2956         188 QQALA----------SSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-------------------YQKAVEALE  238 (389)
T ss_pred             HHHhh----------hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-------------------hHHHHHHHH
Confidence            33333          4455999999999999999999999999999999999                   999999999


Q ss_pred             HHHhcCCCHH
Q 010864          339 AAHALKPSYS  348 (498)
Q Consensus       339 ~Al~l~p~~~  348 (498)
                      .+++-+|+..
T Consensus       239 ~v~eQn~~yl  248 (389)
T COG2956         239 RVLEQNPEYL  248 (389)
T ss_pred             HHHHhChHHH
Confidence            9999999876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.2e-08  Score=101.66  Aligned_cols=117  Identities=24%  Similarity=0.197  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHc
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~~~~~~  223 (498)
                      ......|+.|++.|+              |..|+..|++|+..-..               -..+|.||+.++.+    +
T Consensus       209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l  270 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L  270 (397)
T ss_pred             HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence            445678999999999              99999999999987321               13678999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      ++|.+|+       ..+.++|+++|+|..+++..|.+|..+|+|          +.|+..|+++++++|+|..+...|..
T Consensus       271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            9999988       799999999999999999999999999999          99999999999999999999998888


Q ss_pred             HHHHcch
Q 010864          304 VLYGLAE  310 (498)
Q Consensus       304 ~~~~~g~  310 (498)
                      +-.+..+
T Consensus       334 l~~k~~~  340 (397)
T KOG0543|consen  334 LKQKIRE  340 (397)
T ss_pred             HHHHHHH
Confidence            7666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.99  E-value=9.4e-09  Score=81.40  Aligned_cols=99  Identities=29%  Similarity=0.396  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      +++++|.++..    .|++++|+       ..++++++..|.+..+++.+|.++...|++          ++|+.+|+++
T Consensus         2 ~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYK----LGDYDEAL-------EYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence            57899999999    99999999       689999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       288 l~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +.+.|.+..+++.+|.++...|+                   +..|..++.+++.+.|+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          61 LELDPDNAKAYYNLGLAYYKLGK-------------------YEEALEAYEKALELDPN  100 (100)
T ss_pred             HhCCCcchhHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHccCCC
Confidence            99999999999999999999998                   88999999999888774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.97  E-value=6.8e-08  Score=100.59  Aligned_cols=186  Identities=11%  Similarity=0.033  Sum_probs=153.5

Q ss_pred             hhcHHHHHHHHHHhhhcchh---------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          113 AEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      ..+++.|..+|.++-...+.         -..-+++.++|+.+++++|+..|+++..|..+|.++-++++          
T Consensus       631 n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~----------  700 (913)
T KOG0495|consen  631 NDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN----------  700 (913)
T ss_pred             cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH----------
Confidence            35677777777776655421         12336899999999999999999999999999999999999          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                          .+.|.+.|...++..|+....|..|+.+-..    .|..-.|.       ..++++.-.||++...|.-.-..-.+
T Consensus       701 ----ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildrarlkNPk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  701 ----IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDRARLKNPKNALLWLESIRMELR  765 (913)
T ss_pred             ----HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHHHHhcCCCcchhHHHHHHHHHH
Confidence                9999999999999999999999999999888    88888888       79999999999999999999888899


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH------------------------------HHHHHHHHHcchhHH
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI------------------------------YNLGTVLYGLAEDTL  313 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~------------------------------~~Lg~~~~~~g~~~~  313 (498)
                      .|..          ++|.....+||+--|++...|                              ...|..++...+   
T Consensus       766 ~gn~----------~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k---  832 (913)
T KOG0495|consen  766 AGNK----------EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK---  832 (913)
T ss_pred             cCCH----------HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH---
Confidence            9998          888888888887666654444                              344444444443   


Q ss_pred             hccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                                      ++.|...|.++++.+|++....-
T Consensus       833 ----------------~~kar~Wf~Ravk~d~d~GD~wa  855 (913)
T KOG0495|consen  833 ----------------IEKAREWFERAVKKDPDNGDAWA  855 (913)
T ss_pred             ----------------HHHHHHHHHHHHccCCccchHHH
Confidence                            89999999999999999984443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=8.1e-09  Score=108.78  Aligned_cols=165  Identities=15%  Similarity=0.030  Sum_probs=134.3

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      +.+.+.|-...|+..|++        .+.|-....+|...|+              ..+|.....+-++ +|+++..|..
T Consensus       406 ell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~--------------~~kaeei~~q~le-k~~d~~lyc~  462 (777)
T KOG1128|consen  406 ELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQ--------------HGKAEEINRQELE-KDPDPRLYCL  462 (777)
T ss_pred             HHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcc--------------cchHHHHHHHHhc-CCCcchhHHH
Confidence            345667888889999887        5778888999999998              8888888888888 7888888888


Q ss_pred             HHHHHHHH-----HHHcCCHHHHH------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          212 WAIAISDR-----AKMRGRTKEAE------------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       212 lg~~~~~~-----~~~~g~~~eA~------------~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                      ||.+..+.     +...+++..|.            ..|+++.++++..++++|-....|+++|.+..+++++       
T Consensus       463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-------  535 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-------  535 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-------
Confidence            88886552     11122222221            3356677999999999999999999999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                         +.|..+|.+++.++|++..+|+|++.+|..+++                   -.+|..++..|++.+-++.
T Consensus       536 ---q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------------------k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  536 ---QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------------------KKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             ---HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-------------------hHHHHHHHHHHhhcCCCCC
Confidence               999999999999999999999999999999998                   5677777777777774443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.97  E-value=4.2e-08  Score=102.24  Aligned_cols=188  Identities=10%  Similarity=-0.025  Sum_probs=135.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|+-++|..+...++..|+.....|..+|.++....+              |++|+++|+.|+.++|+|...|.-|+
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~--------------Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK--------------YDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh--------------HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4567999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc--
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--  291 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~--  291 (498)
                      ..-.+    +++++-..       ..-.+.++++|.+...|..++.++...|.+          ..|....+.-....  
T Consensus       117 lLQ~Q----mRd~~~~~-------~tr~~LLql~~~~ra~w~~~Avs~~L~g~y----------~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen  117 LLQIQ----MRDYEGYL-------ETRNQLLQLRPSQRASWIGFAVAQHLLGEY----------KMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHH----HHhhhhHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhcc
Confidence            99999    88888887       577788899999999999999999999999          55555444444332  


Q ss_pred             -CCCHHH-----HHHHHHHHHHcchhHH--hccCCCCC-------CCCC------hhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          292 -FDFHRA-----IYNLGTVLYGLAEDTL--RTGGTVNP-------REVS------PNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       292 -P~~~~a-----~~~Lg~~~~~~g~~~~--~~~~~~~~-------~~~~------~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                       |+....     ......++...|....  ........       -...      ..+.+++|...|...+..+|++..|
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y  255 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY  255 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence             221111     1111222222222100  00000000       0000      0113789999999999999999966


Q ss_pred             HHHHHH
Q 010864          351 SSALRL  356 (498)
Q Consensus       351 ~~~l~~  356 (498)
                      ...+..
T Consensus       256 y~~l~~  261 (700)
T KOG1156|consen  256 YEGLEK  261 (700)
T ss_pred             HHHHHH
Confidence            655443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.94  E-value=2e-08  Score=108.71  Aligned_cols=197  Identities=17%  Similarity=0.049  Sum_probs=151.0

Q ss_pred             hhcHHHHHHHHHHhhhcchhh-------HHhhccHHHHHHHHHHHHHhC--------------------CCCHHHHHHHH
Q 010864          113 AEQNNAAMELINSVTGVDEEG-------RSRQRILTFAAKRYANAIERN--------------------PEDYDALYNWA  165 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~-------~~~~g~~~~A~~~~~~al~~~--------------------P~~~~a~~~lg  165 (498)
                      .+....++.+|.+++..+...       ......|..|...+.....+.                    -+-...++..+
T Consensus       381 P~~l~~as~~Ydn~lSaD~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~  460 (1238)
T KOG1127|consen  381 PSILSWASICYDNALSADASNQRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECEN  460 (1238)
T ss_pred             cHHHHHHHHHHHHhhcCChhhhhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHH
Confidence            455666777777777666321       122344555555444444433                    33333333333


Q ss_pred             HHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010864          166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  245 (498)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~  245 (498)
                      ..++..+-         ....+...|...|-++++++++.+.+|..||..|.+    .-+...|.       ++|++|++
T Consensus       461 ~~~w~a~~---------~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~-------kCf~KAFe  520 (1238)
T KOG1127|consen  461 SEFWVALG---------CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAK-------KCFDKAFE  520 (1238)
T ss_pred             HHHHHHHH---------HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHhc
Confidence            33333222         122348899999999999999999999999999998    55666666       79999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCcchH--------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          246 LNWNSPQALNNWGLALQELSAIVPA--------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       246 l~P~~~~a~~~lg~~l~~~g~~~~a--------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                      +|+.++.++-..+..|.+...++.|                          +-+.+++..|+..|+.|++.+|++.+.|.
T Consensus       521 LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~  600 (1238)
T KOG1127|consen  521 LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWL  600 (1238)
T ss_pred             CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHH
Confidence            9999999999999999999998877                          23478999999999999999999999999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       300 ~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .||.+|...|+                   |..|...|.+|..++|.+.
T Consensus       601 gLGeAY~~sGr-------------------y~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  601 GLGEAYPESGR-------------------YSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHHHHHHhcCc-------------------eehHHHhhhhhHhcCcHhH
Confidence            99999999999                   8999999999999999987

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.93  E-value=5.5e-08  Score=86.33  Aligned_cols=134  Identities=16%  Similarity=0.069  Sum_probs=112.2

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEE  190 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~  190 (498)
                      .+...+-..|..+...     ...++...+...+++.+..+|+.   ..+.+.+|.+++..|+              +++
T Consensus         6 ~~~~~a~~~y~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~~~   66 (145)
T PF09976_consen    6 QQAEQASALYEQALQA-----LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------YDE   66 (145)
T ss_pred             HHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------HHH
Confidence            4455666677776655     34788889999999999999998   5778899999999999              999


Q ss_pred             HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          191 ACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       191 A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      |+..|++++...|+.   ..+.++|+.++..    .|++++|+.       .++. +.-.+-.+.++..+|.+|...|++
T Consensus        67 A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al~-------~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   67 AKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEALA-------TLQQ-IPDEAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHH-------HHHh-ccCcchHHHHHHHHHHHHHHCCCH
Confidence            999999999988664   4588999999999    999999994       5543 334455678899999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHH
Q 010864          268 VPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                                ++|+..|++||
T Consensus       135 ----------~~A~~~y~~Al  145 (145)
T PF09976_consen  135 ----------DEARAAYQKAL  145 (145)
T ss_pred             ----------HHHHHHHHHhC
Confidence                      99999999985

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.90  E-value=1.7e-08  Score=100.02  Aligned_cols=181  Identities=15%  Similarity=0.166  Sum_probs=139.7

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--ED----YDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      .+++.|.++|.++...    +...+++++|..+|.++....-  ++    +.++...+.+|.+. +              
T Consensus        29 ~~~e~Aa~~y~~Aa~~----fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--------------   89 (282)
T PF14938_consen   29 PDYEEAADLYEKAANC----FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--------------   89 (282)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------
T ss_pred             CCHHHHHHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------
Confidence            5899999999999988    7778999999999999976542  21    34567777777666 7              


Q ss_pred             HHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Q 010864          188 LEEACKKYDEATRLC-----PT-LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGL  259 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~-----p~-~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~  259 (498)
                      +++|+.+|++|+.+.     +. -+.++.++|.+|..    . |++++|++.|++|+..|+.--  .+ ....++.++|.
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~  163 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHH
Confidence            999999999999982     22 25688999999998    8 999999999999988888532  11 13567889999


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHH
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ  332 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-------~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  332 (498)
                      ++.++|+|          ++|+..|++.....-+       ....+...+.|++..|+                   +..
T Consensus       164 l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-------------------~v~  214 (282)
T PF14938_consen  164 LYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-------------------YVA  214 (282)
T ss_dssp             HHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--------------------HHH
T ss_pred             HHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-------------------HHH
Confidence            99999999          9999999999875321       12345677888899888                   788


Q ss_pred             HHHHHHHHHhcCCCHH
Q 010864          333 SAIYIAAAHALKPSYS  348 (498)
Q Consensus       333 A~~~~~~Al~l~p~~~  348 (498)
                      |...+++....+|...
T Consensus       215 A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  215 ARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHhhCCCCC
Confidence            8999999999988654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=3.7e-08  Score=98.24  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPE----D-----------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  195 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~----~-----------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  195 (498)
                      +..+++.|+|..|+..|++++..-..    +           ..++.|++.+|..+++              |.+|+..+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c  280 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESC  280 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHH
Confidence            44578999999999999999875331    1           2468999999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864          196 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT  275 (498)
Q Consensus       196 ~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~  275 (498)
                      .++|+++|+|..++|..|.++..    +|+|+.|+       ..|+++++++|+|..+...|..+..+..++        
T Consensus       281 ~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~--------  341 (397)
T KOG0543|consen  281 NKVLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY--------  341 (397)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--------
Confidence            99999999999999999999999    99999999       799999999999999999999998888776        


Q ss_pred             hHHHHHHHHHHHHHhc
Q 010864          276 IVRTAISKFRAAIQLQ  291 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l~  291 (498)
                       .+...+.|.+.+..-
T Consensus       342 -~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  342 -EEKEKKMYANMFAKL  356 (397)
T ss_pred             -HHHHHHHHHHHhhcc
Confidence             244467777777653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.86  E-value=3.2e-08  Score=98.04  Aligned_cols=208  Identities=17%  Similarity=0.162  Sum_probs=129.5

Q ss_pred             ccCCCChhhhhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCC------CCHHH
Q 010864          103 FSQGNTPHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNP------EDYDA  160 (498)
Q Consensus       103 ~~~~~~~~q~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P------~~~~a  160 (498)
                      |++......+.+++++|+++...-+.+.                +..+-.+|.|++|+.++.+-|.+.-      ....+
T Consensus        58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA  137 (639)
T KOG1130|consen   58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA  137 (639)
T ss_pred             HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence            5555555556677888877664333222                2234557999999999988776532      23679


Q ss_pred             HHHHHHHHHHhcCcCCCCCC------CCchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHH
Q 010864          161 LYNWALVLQESADNVSLDST------SPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKE  228 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~------~~~~~~~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~e  228 (498)
                      +||+|.+|...|+...+...      ..+-...++.|.++|..-|++...      ...++-|||..|.-    +|+|+.
T Consensus       138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~  213 (639)
T KOG1130|consen  138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQ  213 (639)
T ss_pred             HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHH
Confidence            99999999999986443322      111223455555555555554222      12344444444444    555555


Q ss_pred             HHHHHH---------------------------------HHHHHHHHHH----hcCC--CCHHHHHHHHHHHHHhcCcch
Q 010864          229 AEELWK---------------------------------QATKNYEKAV----QLNW--NSPQALNNWGLALQELSAIVP  269 (498)
Q Consensus       229 A~~~~~---------------------------------~Al~~~~~Al----~l~P--~~~~a~~~lg~~l~~~g~~~~  269 (498)
                      |+...+                                 .|+++|++++    ++.-  ..++..+.||..|.-+..+  
T Consensus       214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~--  291 (639)
T KOG1130|consen  214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV--  291 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH--
Confidence            443321                                 1334444433    2222  2456678888888888887  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          270 AREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                              ++||.++.+-+.+.      -....+++.||.++..+|.                   ..+|..+.++.+.+
T Consensus       292 --------~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~-------------------h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  292 --------QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE-------------------HRKALYFAELHLRS  344 (639)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh-------------------HHHHHHHHHHHHHH
Confidence                    99999999988874      3456789999999999998                   66777666666554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.86  E-value=5.1e-07  Score=87.23  Aligned_cols=158  Identities=15%  Similarity=0.072  Sum_probs=118.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDAL---YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA  208 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~---~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a  208 (498)
                      ...|+|++|+..|++++...|..+.+.   +++|.+|+..++              +++|+..|++.++++|++   ..+
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence            557999999999999999999987654   999999999999              999999999999998875   468


Q ss_pred             HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchH----
Q 010864          209 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPA----  270 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~-----------~~eA~~~~~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~a----  270 (498)
                      ++.+|.++..    .++           .+.-...-++|+..|++.++..|++.   .+...+..+..++.+.+-.    
T Consensus       109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~  184 (243)
T PRK10866        109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY  184 (243)
T ss_pred             HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988755    331           11111223456689999999999864   3333333332222222111    


Q ss_pred             HhhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010864          271 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~  310 (498)
                      +.+.|.+..|+.-|+.+++--|+.   .++++.++.+|..+|.
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence            445555599999999999987765   6789999999999997

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.85  E-value=1.1e-08  Score=77.37  Aligned_cols=65  Identities=25%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      +.+|..+..    .|++++|+       ..|+++++.+|+++.+++.+|.++..+|++          ++|+..|+++++
T Consensus         1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~   59 (65)
T PF13432_consen    1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred             ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence            467888888    99999999       799999999999999999999999999999          999999999999


Q ss_pred             hcCCCH
Q 010864          290 LQFDFH  295 (498)
Q Consensus       290 l~P~~~  295 (498)
                      ++|+++
T Consensus        60 ~~P~~p   65 (65)
T PF13432_consen   60 LDPDNP   65 (65)
T ss_dssp             HSTT-H
T ss_pred             HCcCCC
Confidence            999975

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.83  E-value=1e-08  Score=82.02  Aligned_cols=80  Identities=26%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      +|+++.|+..|+++++.+|.  +...++.+|.+|+.+|+              |++|+..+++ +..++.+...++.+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence            68999999999999999995  56778889999999999              9999999999 8899999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 010864          215 AISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      ++..    +|++++|++.+++
T Consensus        67 ~~~~----l~~y~eAi~~l~~   83 (84)
T PF12895_consen   67 CLLK----LGKYEEAIKALEK   83 (84)
T ss_dssp             HHHH----TT-HHHHHHHHHH
T ss_pred             HHHH----hCCHHHHHHHHhc
Confidence            9999    9999999964443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.81  E-value=8.4e-09  Score=99.94  Aligned_cols=104  Identities=19%  Similarity=0.127  Sum_probs=94.9

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      +..++++|.|++||.||.+++..+|.++..+.|++.+|+.+.+              |..|...+..|+.++..+..+|.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence            4448999999999999999999999999999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  259 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~  259 (498)
                      ..|.+-..    +|...+|.       +.|+.+|++.|++.+..-.++.
T Consensus       170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHHH
Confidence            99999999    99999999       6999999999997665544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.81  E-value=9.1e-07  Score=93.94  Aligned_cols=71  Identities=13%  Similarity=0.052  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                      -+++.++..|...|++          ++|+.+.++||+..|..++.++..|.+|...|+                   +.
T Consensus       195 w~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-------------------~~  245 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTKARILKHAGD-------------------LK  245 (517)
T ss_pred             HHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-------------------HH
Confidence            4568889999999999          999999999999999999999999999999999                   99


Q ss_pred             HHHHHHHHHHhcCCCHHHHH
Q 010864          332 QSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       332 ~A~~~~~~Al~l~p~~~~~~  351 (498)
                      +|..+++.|-.+|+.+....
T Consensus       246 ~Aa~~~~~Ar~LD~~DRyiN  265 (517)
T PF12569_consen  246 EAAEAMDEARELDLADRYIN  265 (517)
T ss_pred             HHHHHHHHHHhCChhhHHHH
Confidence            99999999999999987433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.81  E-value=1.6e-08  Score=76.48  Aligned_cols=65  Identities=29%  Similarity=0.472  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010864          162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  241 (498)
Q Consensus       162 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~  241 (498)
                      +.+|..++..|+              +++|+..|+++++.+|++..+++.+|.++..    +|++++|+       ..|+
T Consensus         1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~   55 (65)
T PF13432_consen    1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE   55 (65)
T ss_dssp             HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred             ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence            468999999999              9999999999999999999999999999999    99999999       6999


Q ss_pred             HHHhcCCCCH
Q 010864          242 KAVQLNWNSP  251 (498)
Q Consensus       242 ~Al~l~P~~~  251 (498)
                      ++++.+|+++
T Consensus        56 ~a~~~~P~~p   65 (65)
T PF13432_consen   56 RALELDPDNP   65 (65)
T ss_dssp             HHHHHSTT-H
T ss_pred             HHHHHCcCCC
Confidence            9999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.76  E-value=4.6e-07  Score=85.17  Aligned_cols=163  Identities=21%  Similarity=0.181  Sum_probs=114.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---H
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---D  207 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~  207 (498)
                      ....|++.+|+..|++.+...|..   ..+++.+|.+++..|+              +.+|+..|++.++..|++.   .
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhh
Confidence            367899999999999999998865   6789999999999999              9999999999999999854   6


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchH----HhhhhhHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA----REKQTIVRTA  280 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~a----~~~~~~~~~A  280 (498)
                      +++.+|.++..+....-..+.-....++|+..|+..+...|++..   +...+..+...+.+.+-.    +.+.|.+..|
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA  160 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA  160 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            899999998772111000022234456677899999999998642   322222222222211110    4555556999


Q ss_pred             HHHHHHHHHhcCCCH---HHHHHHHHHHHHcch
Q 010864          281 ISKFRAAIQLQFDFH---RAIYNLGTVLYGLAE  310 (498)
Q Consensus       281 i~~~~~Al~l~P~~~---~a~~~Lg~~~~~~g~  310 (498)
                      +..|+.+++.-|+..   .++..++.+|..+|.
T Consensus       161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence            999999999999874   678889999999997

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.76  E-value=1.6e-06  Score=90.63  Aligned_cols=165  Identities=12%  Similarity=0.035  Sum_probs=122.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .|..+.-..++++++...|.....|...+..++..|+              ...|...+.+|++.+|++-+.|+.--.+.
T Consensus       563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd--------------v~~ar~il~~af~~~pnseeiwlaavKle  628 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD--------------VPAARVILDQAFEANPNSEEIWLAAVKLE  628 (913)
T ss_pred             cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC--------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence            3667777788888888888888888888999988888              99999999999999999888887766666


Q ss_pred             HHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          217 SDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~--------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      +.    ..+++.|..+|                          ++|+..++++++..|++...|..+|.++.++++.   
T Consensus       629 ~e----n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i---  701 (913)
T KOG0495|consen  629 FE----NDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI---  701 (913)
T ss_pred             hc----cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH---
Confidence            66    66777766544                          3466677777777777777777777777777777   


Q ss_pred             HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                             +.|...|...++.-|+....|..|+.+-...|.                   ...|...+.++.--+|++.
T Consensus       702 -------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-------------------~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  702 -------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-------------------LVRARSILDRARLKNPKNA  753 (913)
T ss_pred             -------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-------------------hhhHHHHHHHHHhcCCCcc
Confidence                   666666666666666666666666666655554                   4556666666666666666

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.75  E-value=3.3e-07  Score=89.28  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHH-HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          157 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       157 ~~~a~~~lg~~~-~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      +...+|..|..+ +..|+              |++|+..|++.++..|++   ..+++.+|.+|..    .|++++|+  
T Consensus       141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~--  200 (263)
T PRK10803        141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA--  200 (263)
T ss_pred             CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence            357788888876 55688              999999999999999997   5799999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864          233 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  297 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a  297 (498)
                           ..|++++...|+   .+++++.+|.++..+|++          ++|+..|+++++..|+...+
T Consensus       201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence                 688888877776   689999999999999999          99999999999999997754

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.73  E-value=1.8e-08  Score=99.75  Aligned_cols=164  Identities=17%  Similarity=0.149  Sum_probs=116.1

Q ss_pred             cHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhH
Q 010864          115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALL  188 (498)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~  188 (498)
                      ++..--.+|.++++.    ++.+++|++|+++...-|.+.      -..+.+--|||+.+..+|.              |
T Consensus        50 Dl~tLSAIYsQLGNA----yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--------------f  111 (639)
T KOG1130|consen   50 DLSTLSAIYSQLGNA----YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--------------F  111 (639)
T ss_pred             HHHHHHHHHHHhcch----hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--------------c
Confidence            334444455555544    777888888888755443321      2334556789999999998              9


Q ss_pred             HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          189 EEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGR-------------TKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      ++|+.++.+-|.+...      ...++||||.+|..    .|+             .+++...++.|+++|..-+++.-.
T Consensus       112 deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha----kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~  187 (639)
T KOG1130|consen  112 DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA----KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK  187 (639)
T ss_pred             chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh----cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988877332      46799999999998    554             356677888999999988876543


Q ss_pred             ------CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcch
Q 010864          250 ------SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       250 ------~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~  310 (498)
                            ...++-|||..|+-+|+|          +.||.+.+.-+++...+      -.++.|||.++.-+|+
T Consensus       188 lgDr~aqGRa~GnLGNTyYlLGdf----------~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  188 LGDRLAQGRAYGNLGNTYYLLGDF----------DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             hhhHHhhcchhcccCceeeeeccH----------HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence                  345678888888888888          77777777666664443      2466777777766665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.73  E-value=2.7e-08  Score=79.49  Aligned_cols=80  Identities=26%  Similarity=0.295  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                      ++|++|+..|+++++.+|.  +...++++|.+|..    .|++++|+       ..+++ ++.++.+...++.+|.++.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            4499999999999999995  56678889999999    99999999       57777 88888899999999999999


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHH
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      +|++          ++|+.+|+++
T Consensus        71 l~~y----------~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKY----------EEAIKALEKA   84 (84)
T ss_dssp             TT-H----------HHHHHHHHHH
T ss_pred             hCCH----------HHHHHHHhcC
Confidence            9999          9999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.71  E-value=1.9e-07  Score=82.83  Aligned_cols=112  Identities=15%  Similarity=0.010  Sum_probs=100.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010864          149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE  228 (498)
Q Consensus       149 ~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e  228 (498)
                      .+..+.++.-+..+..|.-++..|+              +++|...|+-...++|.+.+.++.||.++..    +++|++
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~   89 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQK   89 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHH
Confidence            3444566677889999999999999              9999999999999999999999999999998    888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      |+       ..|-.|..++++++...+..|.+|..+|+.          +.|+.+|..++. .|.+..
T Consensus        90 Ai-------~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331         90 AC-------DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HH-------HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHH
Confidence            88       799999999999999999999999999999          999999999998 465443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.68  E-value=6e-07  Score=87.47  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          205 LHDAFYNWAIAI-SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       205 ~~~a~~~lg~~~-~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                      ....+|..+..+ .+    .|+|++|+       ..|++.++..|++   +.+++.+|.+|+..|++          ++|
T Consensus       141 ~e~~~Y~~A~~l~~~----~~~y~~Ai-------~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A  199 (263)
T PRK10803        141 DANTDYNAAIALVQD----KSRQDDAI-------VAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDA  199 (263)
T ss_pred             CHHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHH
Confidence            456778888776 56    78999999       6899999999997   58999999999999999          999


Q ss_pred             HHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          281 ISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       281 i~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +..|++++...|+   .+.+++.+|.++..+|+                   +..|..+|++.++..|+......+...+
T Consensus       200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-------------------~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-------------------TAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999999887   47899999999999998                   8999999999999999998776665544

>PRK15331 chaperone protein SicA; Provisional

Probab=98.68  E-value=2.8e-07  Score=81.79  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=98.0

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                      +.++..+..|..|.-+..    .|++++|.       ..|+-..-++|.+...|..||.+++.+++|          ++|
T Consensus        32 is~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~A   90 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKA   90 (165)
T ss_pred             CCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHH
Confidence            455566778888888888    99999999       699988999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      +..|..|..++++++...+..|.||..+|+                   ...|..+|+.++. .|.+.
T Consensus        91 i~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-------------------~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331         91 CDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-------------------AAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHHHcccCCCCccchHHHHHHHhCC-------------------HHHHHHHHHHHHh-CcchH
Confidence            999999999999999999999999999999                   7899999999999 56665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.65  E-value=1.2e-07  Score=96.70  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=63.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a---~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      .+|+++++|+|+|.+|+.+|+              |++|+..|++||+++|++..+   |+|+|.+|..    +|++++|
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA  131 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA  131 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence            589999999999999999999              999999999999999999865   9999999999    9999999


Q ss_pred             HHHHHHHHHH
Q 010864          230 EELWKQATKN  239 (498)
Q Consensus       230 ~~~~~~Al~~  239 (498)
                      ++++++|++.
T Consensus       132 la~LrrALel  141 (453)
T PLN03098        132 ADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHh
Confidence            9766666654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.65  E-value=9.7e-08  Score=92.68  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      +...|+-|+.+|.              |++||.+|.+++.++|.++..+.|.+.+|.+    +.+|..|.       ..+
T Consensus       100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC  154 (536)
T KOG4648|consen  100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC  154 (536)
T ss_pred             HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence            5678999999999              9999999999999999999999999999999    99999888       689


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      ..|+.+|-.+..+|...|.+...+|..          .+|.+.|+.+|++.|++-+..-.++.+
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999999999999999999999          999999999999999977655544443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=5.1e-07  Score=81.73  Aligned_cols=109  Identities=24%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      +-+..-|+-++..|+              |++|...|..||.+.|...     -.|.|.|.++.+    +++++.|+   
T Consensus        96 d~lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI---  154 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI---  154 (271)
T ss_pred             HHHHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH---
Confidence            334556888999999              9999999999999999853     578899999999    88888888   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                          ..+.+|++++|.+..++...+.+|.++.+|          ++|+..|++.++++|....+.-.+.
T Consensus       155 ----~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  155 ----EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             ----HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHH
Confidence                799999999999999999999999999999          9999999999999999765544433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=1.4e-06  Score=83.49  Aligned_cols=148  Identities=20%  Similarity=0.164  Sum_probs=124.2

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      .+..+|..||+++..-.+.+|.+-..+..||.+|+...+              |..|..+|++.-.+.|......+.-+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ   86 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999              999999999999999998877777777


Q ss_pred             HHHHHHHHcCCHHHHHHHH----------------HHHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHhcCcch
Q 010864          215 AISDRAKMRGRTKEAEELW----------------KQATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP  269 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~----------------~~Al~~-------~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~~  269 (498)
                      .+.+    .+.+..|+.-.                +.|+++       .+-.++.-|  +.+...+|.|.++++.|++  
T Consensus        87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy--  160 (459)
T KOG4340|consen   87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY--  160 (459)
T ss_pred             HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence            7777    77777777432                112221       122233335  5788999999999999999  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                              ++|++.|+.|++..--.+-.-||++.+++..++
T Consensus       161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~q  193 (459)
T KOG4340|consen  161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ  193 (459)
T ss_pred             --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence                    999999999999998889999999999999998

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.62  E-value=7.5e-07  Score=75.97  Aligned_cols=97  Identities=24%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      +.+++++|.++-.+|+              .++|+..|++++....+.   ..++.++|.++..    +|++++|+    
T Consensus         1 ~~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~----   58 (120)
T PF12688_consen    1 PRALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL----   58 (120)
T ss_pred             CchHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH----
Confidence            3578999999999999              999999999999985543   5799999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          235 QATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                         ..+++++...|+   +..+...++.++...|++          ++|+..+-.++.
T Consensus        59 ---~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la  103 (120)
T PF12688_consen   59 ---ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA  103 (120)
T ss_pred             ---HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence               577888887788   888999999999999999          999999888774

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.62  E-value=9.3e-07  Score=98.72  Aligned_cols=62  Identities=10%  Similarity=-0.064  Sum_probs=40.3

Q ss_pred             hhhcHHHHHHHHHHhhhcc-------hhhHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Q 010864          112 LAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESAD  173 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~  173 (498)
                      ..++.++|..+|......+       -.++.+.|++++|+..|++..... .-+...+..+..++...|+
T Consensus       271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            4577888888887543322       445777888888888888776543 1234566666666666666

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.61  E-value=5.1e-06  Score=78.13  Aligned_cols=158  Identities=25%  Similarity=0.242  Sum_probs=118.8

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      .+..++..|..++..|+              |.+|+..|++.+...|+.   ..+.+.+|.++..    .|++.+|+   
T Consensus         4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~---   62 (203)
T PF13525_consen    4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI---   62 (203)
T ss_dssp             -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred             CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence            56789999999999999              999999999999998874   5789999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcc-hHHhhhhhHHHHHHHHHHHHHhcCCCHH---HH--------
Q 010864          234 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFHR---AI--------  298 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~-~a~~~~~~~~~Ai~~~~~Al~l~P~~~~---a~--------  298 (498)
                          ..|++.++..|++   ..+++.+|.++..+.+-. ......+...+|+..|+..++.-|+...   +.        
T Consensus        63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~  138 (203)
T PF13525_consen   63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN  138 (203)
T ss_dssp             ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence                6888888888875   468999999988764320 0134556678999999999999998742   22        


Q ss_pred             ------HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          299 ------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       299 ------~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                            +.+|..|++.|.                   |..|+..++.+++--|+......++.++.
T Consensus       139 ~la~~e~~ia~~Y~~~~~-------------------y~aA~~r~~~v~~~yp~t~~~~~al~~l~  185 (203)
T PF13525_consen  139 RLAEHELYIARFYYKRGK-------------------YKAAIIRFQYVIENYPDTPAAEEALARLA  185 (203)
T ss_dssp             HHHHHHHHHHHHHHCTT--------------------HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence                  234455555555                   89999999999999999987766665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.60  E-value=2.3e-06  Score=75.82  Aligned_cols=113  Identities=19%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL  261 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l  261 (498)
                      ...+...+++.+.-+|+.   ..+.+.+|.++..    .|++++|.       ..|++++...|+.   ..+..+|+.++
T Consensus        27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            888988999999999998   5678889999999    99999999       5888888776654   56889999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ...|++          ++|+..++. +.-.+-.+.++..+|.+|...|+                   +.+|...|++|+
T Consensus        96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-------------------~~~A~~~y~~Al  145 (145)
T PF09976_consen   96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-------------------YDEARAAYQKAL  145 (145)
T ss_pred             HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHhC
Confidence            999999          999999976 33344456788899999999999                   899999998874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.60  E-value=4.3e-08  Score=77.03  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      |+.+.+++++|.+|..    +|++++|++.|++|+..++..-...|..+.+++++|.++..+|++          ++|+.
T Consensus         2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~   67 (78)
T PF13424_consen    2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence            4556889999999999    999999999999998884333223345688999999999999999          99999


Q ss_pred             HHHHHHHhc
Q 010864          283 KFRAAIQLQ  291 (498)
Q Consensus       283 ~~~~Al~l~  291 (498)
                      +|++++++.
T Consensus        68 ~~~~al~i~   76 (78)
T PF13424_consen   68 YYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999999863

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.60  E-value=4.7e-07  Score=89.66  Aligned_cols=160  Identities=14%  Similarity=0.054  Sum_probs=125.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|++.+.+.     ++.++....-.+|..+++              ++.|.+.++.+-+.+.+..  ..+|+
T Consensus       112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R--------------~dlA~k~l~~~~~~~eD~~--l~qLa  170 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR--------------PDLAEKELKNMQQIDEDSI--LTQLA  170 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCCSCCHH--HHHHH
T ss_pred             HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcHH--HHHHH
Confidence            45579999999888764     678888889999999999              9999999999988877754  44555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++...+....++.+|.       -.|+...+..+.++..++.++.++..+|+|          ++|...+++|+..+|+
T Consensus       171 ~awv~l~~g~e~~~~A~-------y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAF-------YIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHHHHHHHTTTCCCHHH-------HHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CC
T ss_pred             HHHHHHHhCchhHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccC
Confidence            55444322233677777       688887777788999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      ++.++.|+..+...+|+.                  ...+..++.+.....|+++.
T Consensus       234 ~~d~LaNliv~~~~~gk~------------------~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKP------------------TEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-T------------------CHHHHHHHHHCHHHTTTSHH
T ss_pred             CHHHHHHHHHHHHHhCCC------------------hhHHHHHHHHHHHhCCCChH
Confidence            999999999999999972                  14456777888888888873

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=4.4e-07  Score=92.61  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCcchHHhhhhhH
Q 010864          201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      .+|+++.+|+|+|.+|..    +|+|++|+       ..|+++++++|++..+   |+|+|.+|..+|++          
T Consensus        70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG----------  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence            589999999999999999    99999999       7999999999999865   99999999999999          


Q ss_pred             HHHHHHHHHHHHh
Q 010864          278 RTAISKFRAAIQL  290 (498)
Q Consensus       278 ~~Ai~~~~~Al~l  290 (498)
                      ++|+.+|++|+++
T Consensus       129 dEAla~LrrALel  141 (453)
T PLN03098        129 KKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999998

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.57  E-value=2.4e-06  Score=72.93  Aligned_cols=108  Identities=24%  Similarity=0.281  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .++|++|.++..    +|+.++|+       ..|++++.....   -..++.++|..|..+|++          ++|+..
T Consensus         2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~   60 (120)
T PF12688_consen    2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL   60 (120)
T ss_pred             chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence            578999999999    99999999       688888876544   367899999999999999          999999


Q ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          284 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       284 ~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +++++...|+   +..+...++.+++..|+                   +.+|+..+-.++.  +..+.|.+++..
T Consensus        61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-------------------~~eAl~~~l~~la--~~~~~y~ra~~~  115 (120)
T PF12688_consen   61 LEEALEEFPDDELNAALRVFLALALYNLGR-------------------PKEALEWLLEALA--ETLPRYRRAIRF  115 (120)
T ss_pred             HHHHHHHCCCccccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            9999999898   88889999999999999                   6777777666554  344466666544

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.56  E-value=1.8e-05  Score=91.17  Aligned_cols=169  Identities=11%  Similarity=0.022  Sum_probs=106.5

Q ss_pred             hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCcCC
Q 010864          112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESADNVS  176 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~  176 (498)
                      ..++.++|+.+|.......           -.++.+.|++++|...|.+....    .|+ ...|..+-..|.+.|+   
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~---  594 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ---  594 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC---
Confidence            4567777777776654322           44566778888888888877653    343 4667777777777777   


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------
Q 010864          177 LDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--------------------  235 (498)
Q Consensus       177 ~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~--------------------  235 (498)
                                 +++|++.|+++.+.+ +.+...|+.+...|.+    .|++++|++.|++                    
T Consensus       595 -----------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~  659 (1060)
T PLN03218        595 -----------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA  659 (1060)
T ss_pred             -----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence                       777777777777765 3456677777777777    7777777754422                    


Q ss_pred             --------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHH
Q 010864          236 --------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTV  304 (498)
Q Consensus       236 --------Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~  304 (498)
                              |+..+++..+.. +-+..+++.+..+|.+.|++          ++|+..|++..+.  .|+ ...|+.|...
T Consensus       660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~~Pd-vvtyN~LI~g  728 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKLRPT-VSTMNALITA  728 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence                    223344433332 22444555555555555555          7777777766543  343 5667777777


Q ss_pred             HHHcch
Q 010864          305 LYGLAE  310 (498)
Q Consensus       305 ~~~~g~  310 (498)
                      |.+.|+
T Consensus       729 y~k~G~  734 (1060)
T PLN03218        729 LCEGNQ  734 (1060)
T ss_pred             HHHCCC
Confidence            777776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=2.6e-07  Score=70.37  Aligned_cols=66  Identities=18%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|++++|+..|++++..+|++.++++.+|.+|...|+              +++|...+++++..+|++..++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            457999999999999999999999999999999999999              999999999999999998887776664

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.55  E-value=1e-05  Score=78.10  Aligned_cols=173  Identities=14%  Similarity=0.075  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a---~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      ..+..++..|..+...|+              |++|++.|++++...|....+   .+.+|.++.+    .+++++|+  
T Consensus        30 ~~~~~~Y~~A~~~~~~g~--------------y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~--   89 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGN--------------WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQ--   89 (243)
T ss_pred             CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHH--
Confidence            467889999999999999              999999999999999997654   4999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcC-----c---chHHhhhhhHHHHHHHHHHHHHhcCCCH---HHH
Q 010864          233 WKQATKNYEKAVQLNWNS---PQALNNWGLALQELSA-----I---VPAREKQTIVRTAISKFRAAIQLQFDFH---RAI  298 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~-----~---~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~  298 (498)
                           ..|++.++.+|++   +.+++.+|.++..++.     +   +.....+....+|+..|++.++.-|+..   .+.
T Consensus        90 -----~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~  164 (243)
T PRK10866         90 -----AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT  164 (243)
T ss_pred             -----HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence                 6999999998875   5789999998766652     1   1112334455789999999999999873   344


Q ss_pred             HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       299 ~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      ..|..+...+.+.....+..     .-..+.|..|+.-++..++--|+......++..+.
T Consensus       165 ~rl~~l~~~la~~e~~ia~~-----Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~  219 (243)
T PRK10866        165 KRLVFLKDRLAKYELSVAEY-----YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME  219 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            43333333333321111100     00000177788888888888888887666666654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.53  E-value=1.3e-07  Score=74.33  Aligned_cols=70  Identities=27%  Similarity=0.363  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHHHHHcCCHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---C----PTLHDAFYNWAIAISDRAKMRGRTK  227 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~----p~~~~a~~~lg~~~~~~~~~~g~~~  227 (498)
                      |+.+.+++++|.+|..+|+              +++|+..|++++.+   .    |..+.+++++|.++..    +|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~   63 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence            3456789999999999999              99999999999987   1    2246789999999999    99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 010864          228 EAEELWKQATKNYEK  242 (498)
Q Consensus       228 eA~~~~~~Al~~~~~  242 (498)
                      +|++.+++|++.+++
T Consensus        64 ~A~~~~~~al~i~~k   78 (78)
T PF13424_consen   64 EALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcC
Confidence            999888888877764

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=1.2e-06  Score=79.33  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=89.7

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  206 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  206 (498)
                      ..++..|+|++|..-|..||++.|..+     -.|.|+|.++..++.              ++.||..+.+|++++|.+-
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty~  168 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTYE  168 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchhH
Confidence            346889999999999999999999764     468899999999999              9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                      .++...+.+|.+    +.+|++|+       ..|.+.++.+|...++.-...
T Consensus       169 kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  169 KALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHHHHH
Confidence            999999999999    88888888       699999999998765544333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.51  E-value=3e-05  Score=77.30  Aligned_cols=187  Identities=15%  Similarity=0.086  Sum_probs=134.3

Q ss_pred             hhhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864          111 QLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS  179 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~  179 (498)
                      ++-++.+.+-.+++.+....           ......+|++..|..-..++++..|.+++++...-.+|+.+|+      
T Consensus       129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~------  202 (400)
T COG3071         129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA------  202 (400)
T ss_pred             HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc------
Confidence            44577777777777777662           2234456888888888888888888888888888888888888      


Q ss_pred             CCCchhhhHHHHHHHHHHHHHh------------------------CCCCHHH----H----------HHHHHHHHHHHH
Q 010864          180 TSPSKDALLEEACKKYDEATRL------------------------CPTLHDA----F----------YNWAIAISDRAK  221 (498)
Q Consensus       180 ~~~~~~~~~~~A~~~~~~Al~l------------------------~p~~~~a----~----------~~lg~~~~~~~~  221 (498)
                              +.+.+....+.-+-                        +++....    |          -++..+|..++-
T Consensus       203 --------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li  274 (400)
T COG3071         203 --------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI  274 (400)
T ss_pred             --------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence                    88877777665442                        1111111    1          122333333344


Q ss_pred             HcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          222 MRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       222 ~~g~~~eA~~~~~~------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      .+|+.++|.+..++                        -++..++.+...|+++..+..||..+.+.+.|          
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----------  344 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----------  344 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------
Confidence            48888888876544                        33567777888899999999999999999988          


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      .+|..+|+.|+...|+ ...+..+|.++..+|+                   ...|..+++.++
T Consensus       345 ~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~-------------------~~~A~~~r~e~L  388 (400)
T COG3071         345 GKASEALEAALKLRPS-ASDYAELADALDQLGE-------------------PEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC-------------------hHHHHHHHHHHH
Confidence            9999999999988887 6778888999999998                   566666666655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.50  E-value=5e-06  Score=70.36  Aligned_cols=110  Identities=23%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----HHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----~~a~  209 (498)
                      ....|+++.|++.|.++|.+.|..+.+|+|++..+.-+|+              .++|++.+.+|+++.-..    ..+|
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence            3557999999999999999999999999999999999999              999999999999995443    3578


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATK-----NYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~-----~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                      ...|.+|..    +|+-+.|...|+.|..     .-++.+.+||--+-+...|+.++
T Consensus       119 vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f  171 (175)
T KOG4555|consen  119 VQRGLLYRL----LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF  171 (175)
T ss_pred             HHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            889999988    9999999987776553     33455677775444444555444

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.50  E-value=3.3e-05  Score=88.97  Aligned_cols=142  Identities=6%  Similarity=-0.047  Sum_probs=81.4

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY  210 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~  210 (498)
                      ++.+.|++++|...|++....... +...|..+-..|.+.|+              +++|+..|.+.....- -+...|+
T Consensus       481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--------------~eeAl~lf~~M~~~Gv~PD~vTYn  546 (1060)
T PLN03218        481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--------------VAKAFGAYGIMRSKNVKPDRVVFN  546 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Confidence            345556666666666666554322 45666666666666666              6666666666654421 1345566


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      .+-.+|.+    .|++++|.       ..|++...    +.| +..+++.+-.+|.+.|++          ++|+..|++
T Consensus       547 sLI~a~~k----~G~~deA~-------~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l----------deA~elf~~  604 (1060)
T PLN03218        547 ALISACGQ----SGAVDRAF-------DVLAEMKAETHPIDP-DHITVGALMKACANAGQV----------DRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHH----CCCHHHHH-------HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence            66666666    66666666       34554443    234 356667777777777777          555555555


Q ss_pred             HHHhc-CCCHHHHHHHHHHHHHcch
Q 010864          287 AIQLQ-FDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       287 Al~l~-P~~~~a~~~Lg~~~~~~g~  310 (498)
                      ..+.+ +.+...|+.+...|.+.|+
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~  629 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGD  629 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCC
Confidence            55543 2334555555555555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=8.2e-06  Score=74.97  Aligned_cols=105  Identities=21%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      +.|.-+|++..-     +-..|-.+-|.-.|.+++.++|+.+++++.+|..+...|+              |+.|.+.|+
T Consensus        63 eRA~l~fERGvl-----YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFd  123 (297)
T COG4785          63 ERAQLLFERGVL-----YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFD  123 (297)
T ss_pred             HHHHHHHHhcch-----hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhh
Confidence            344455555433     3456777888999999999999999999999999999999              999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      ..++++|.+-.++.|.|+.+.-    -||+.-|.+       .+.+-.+-||+++
T Consensus       124 s~~ELDp~y~Ya~lNRgi~~YY----~gR~~LAq~-------d~~~fYQ~D~~DP  167 (297)
T COG4785         124 SVLELDPTYNYAHLNRGIALYY----GGRYKLAQD-------DLLAFYQDDPNDP  167 (297)
T ss_pred             hHhccCCcchHHHhccceeeee----cCchHhhHH-------HHHHHHhcCCCCh
Confidence            9999999999999999999998    999999994       5556666666655

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=9.2e-06  Score=84.33  Aligned_cols=153  Identities=19%  Similarity=0.116  Sum_probs=125.4

Q ss_pred             hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      +.+.+++|+.+.+.-....         ..+.+++++.++|+..++   ..++.+..++...|.+++++++         
T Consensus        58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~---------  125 (652)
T KOG2376|consen   58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER---------  125 (652)
T ss_pred             hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh---------
Confidence            4577888886665544321         446788999999999998   5677777789999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHh------------------------------CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l------------------------------~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                           |++|...|+..++-                              .|. ..+.+||.+.++..    .|+|.+|++
T Consensus       126 -----ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e  196 (652)
T KOG2376|consen  126 -----YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE  196 (652)
T ss_pred             -----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence                 99999999987542                              232 56788999999999    999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          232 LWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~--------~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                      .++.|+..+++-+..+-.+        ..+...|+.+|+.+|+.          ++|...|...|+.+|-+.
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCCc
Confidence            9999999999998766443        34678899999999999          999999999999887654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.47  E-value=2.3e-05  Score=71.63  Aligned_cols=159  Identities=30%  Similarity=0.342  Sum_probs=130.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC---CCHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP---TLHDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~-~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p---~~~~a~  209 (498)
                      ....+.+..++..+.+++..++.........+. ++...|+              +++|+..|.+++..+|   .....+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457         105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD--------------YEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCccchHHHH
Confidence            344677888888999988888877666666666 8888888              9999999999988777   355666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      ..++..+..    .+++.+++       ..+.+++...+. ....+.+++..+...+++          +.|+..+.+++
T Consensus       171 ~~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~  229 (291)
T COG0457         171 LALGALLEA----LGRYEEAL-------ELLEKALKLNPDDDAEALLNLGLLYLKLGKY----------EEALEYYEKAL  229 (291)
T ss_pred             HHhhhHHHH----hcCHHHHH-------HHHHHHHhhCcccchHHHHHhhHHHHHcccH----------HHHHHHHHHHH
Confidence            777777667    78888888       688888888888 688999999999999988          99999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      ...|.....+..++..+...+.                   +..+...+.+++...|.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         230 ELDPDNAEALYNLALLLLELGR-------------------YEEALEALEKALELDPD  268 (291)
T ss_pred             hhCcccHHHHhhHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcc
Confidence            9999877888888888885554                   78888888999998887

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.47  E-value=2.5e-05  Score=71.42  Aligned_cols=159  Identities=29%  Similarity=0.313  Sum_probs=140.4

Q ss_pred             HHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIE--RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      +...+.+..++..+...+.  ..+.....+..+|..+...+.              +..++..+.+++...+........
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  134 (291)
T COG0457          69 LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK--------------YEEALELLEKALALDPDPDLAEAL  134 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHcCCCCcchHHHH
Confidence            4557889999999999997  789999999999999999999              999999999999998887666666


Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          212 WAI-AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       212 lg~-~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      .+. ++..    .|+++.|.       ..|.+++..+|   .....+..++..+...+++          +.|+..+.++
T Consensus       135 ~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~  193 (291)
T COG0457         135 LALGALYE----LGDYEEAL-------ELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKA  193 (291)
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHH
Confidence            666 7888    99999999       57777777777   4677788888888888888          9999999999


Q ss_pred             HHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          288 IQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       288 l~l~P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +...+. ....+.+++.++...+.                   +..+..++.+++...|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGK-------------------YEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHccc-------------------HHHHHHHHHHHHhhCcc
Confidence            999999 79999999999999996                   88999999999999997

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.45  E-value=5.3e-06  Score=85.10  Aligned_cols=117  Identities=18%  Similarity=0.082  Sum_probs=106.0

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..++++.|+..|++..+.+|+   +...++.++...++              -.+|+..+.+++..+|.+...+...+..
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            368899999999999988875   56778999999888              8999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      +.+    .++++.|+       ...++++.+.|++..+|+.|+.+|..+|++          +.|+..++.+-..
T Consensus       244 Ll~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  244 LLS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNSCPML  297 (395)
T ss_pred             HHh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhcCcCC
Confidence            999    99999888       799999999999999999999999999999          9998877755433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.44  E-value=1.2e-06  Score=67.73  Aligned_cols=71  Identities=24%  Similarity=0.299  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864          164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  243 (498)
Q Consensus       164 lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A  243 (498)
                      |..+|+..++              +++|++++++++.++|+++..|+.+|.++..    +|++.+|+       ..|+++
T Consensus         1 l~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~   55 (73)
T PF13371_consen    1 LKQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERA   55 (73)
T ss_pred             CHHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHH
Confidence            3567888888              9999999999999999999999999999999    99999999       699999


Q ss_pred             HhcCCCCHHHHHHHHH
Q 010864          244 VQLNWNSPQALNNWGL  259 (498)
Q Consensus       244 l~l~P~~~~a~~~lg~  259 (498)
                      ++.+|++..+....+.
T Consensus        56 l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   56 LELSPDDPDARALRAM   71 (73)
T ss_pred             HHHCCCcHHHHHHHHh
Confidence            9999999887765543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=1.2e-06  Score=67.59  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      ..+|..    .+++++|+       +.+++++.++|+++..+..+|.++..+|++          .+|+..|+++++..|
T Consensus         2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP   60 (73)
T ss_pred             HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence            456666    99999998       799999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHH
Q 010864          293 DFHRAIYNLG  302 (498)
Q Consensus       293 ~~~~a~~~Lg  302 (498)
                      ++..+....+
T Consensus        61 ~~~~~~~~~a   70 (73)
T PF13371_consen   61 DDPDARALRA   70 (73)
T ss_pred             CcHHHHHHHH
Confidence            9888766554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.42  E-value=8.9e-07  Score=67.38  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                      |++++|+..|++++..+|++..+++.+|.+|..    .|++++|.       ..+++++..+|+++..+..++.+
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhcC
Confidence            349999999999999999999999999999999    99999999       69999999999998888777653

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.42  E-value=4.1e-05  Score=81.48  Aligned_cols=180  Identities=16%  Similarity=0.063  Sum_probs=127.6

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc--------
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN--------  174 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~--------  174 (498)
                      .|++++|++.+......-          +..+.++|++++|...|...|..||++..-+..+..++.-....        
T Consensus        17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~   96 (517)
T PF12569_consen   17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL   96 (517)
T ss_pred             CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence            467777777775533322          45578899999999999999999999999988888887333210        


Q ss_pred             ---------CCCCCCC-------CchhhhHH------------------------------------HHHHHHHHHHHhC
Q 010864          175 ---------VSLDSTS-------PSKDALLE------------------------------------EACKKYDEATRLC  202 (498)
Q Consensus       175 ---------~~~~~~~-------~~~~~~~~------------------------------------~A~~~~~~Al~l~  202 (498)
                               ..|.+..       ......|.                                    +-...|...++.+
T Consensus        97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~  176 (517)
T PF12569_consen   97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN  176 (517)
T ss_pred             HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence                     0011110       00001111                                    1111111111111


Q ss_pred             ------------CCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 010864          203 ------------PTL--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV  268 (498)
Q Consensus       203 ------------p~~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  268 (498)
                                  |..  .-+++.++..|..    .|++++|+       .+.++||+..|..++.+...|.+|...|++ 
T Consensus       177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~-  244 (517)
T PF12569_consen  177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL-  244 (517)
T ss_pred             CCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-
Confidence                        111  1255777888888    99999888       799999999999999999999999999999 


Q ss_pred             hHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010864          269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL  313 (498)
Q Consensus       269 ~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~  313 (498)
                               ++|..+++.|-.+++.+--+....+..+.+.|+...
T Consensus       245 ---------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~  280 (517)
T PF12569_consen  245 ---------KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE  280 (517)
T ss_pred             ---------HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence                     999999999999999998888888888888886433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.40  E-value=1.4e-05  Score=67.69  Aligned_cols=102  Identities=32%  Similarity=0.357  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      +-.-|..+.+.|+              ++.|++.|.++|.+.|.++.+|+|.+.++.-    +|+.++|+       ..+
T Consensus        46 LEl~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDL  100 (175)
T KOG4555|consen   46 LELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDL  100 (175)
T ss_pred             HHHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHH
Confidence            3446788889999              9999999999999999999999999999988    99999999       578


Q ss_pred             HHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864          241 EKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  297 (498)
Q Consensus       241 ~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a  297 (498)
                      ++|+++.-+.    -+++...|.+|..+|+-          +.|...|+.|-++...++.-
T Consensus       101 n~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FAr~  151 (175)
T KOG4555|consen  101 NKALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFARE  151 (175)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHHHH
Confidence            8888776443    36788999999999999          99999999999887766543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.39  E-value=0.00015  Score=72.37  Aligned_cols=208  Identities=15%  Similarity=0.079  Sum_probs=156.1

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDST  180 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~~~~~  180 (498)
                      ..|++..|..++.+.....          ...-...|+++.|-.+..++-+..++ .-.....++.++...|+       
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d-------  168 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD-------  168 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence            4577777777776654444          12234568999999999999888443 34567778888888888       


Q ss_pred             CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHH-HHH
Q 010864          181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATK-NYE  241 (498)
Q Consensus       181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------------------Al~-~~~  241 (498)
                             +..|.....++++..|.+..+....-.+|..    .|++.+......+                  |.. ..+
T Consensus       169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999    9999999876532                  111 111


Q ss_pred             HH------------HhcCC----CCHHHHHHHHHHHHHhcCcchHH---------------------hhhhhHHHHHHHH
Q 010864          242 KA------------VQLNW----NSPQALNNWGLALQELSAIVPAR---------------------EKQTIVRTAISKF  284 (498)
Q Consensus       242 ~A------------l~l~P----~~~~a~~~lg~~l~~~g~~~~a~---------------------~~~~~~~~Ai~~~  284 (498)
                      ++            .+--|    +++.....++.-+.++|.+++|.                     -+.++...=++..
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~  317 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA  317 (400)
T ss_pred             HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence            11            11112    34566667777788888887771                     1245666667777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       285 ~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      ++.++..|+++..+..||..|++.+.                   |.+|..+++.|+++.|+...+...-..
T Consensus       318 e~~l~~h~~~p~L~~tLG~L~~k~~~-------------------w~kA~~~leaAl~~~~s~~~~~~la~~  370 (400)
T COG3071         318 EKWLKQHPEDPLLLSTLGRLALKNKL-------------------WGKASEALEAALKLRPSASDYAELADA  370 (400)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            88888899999999999999999998                   999999999999999998866554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.1e-05  Score=79.10  Aligned_cols=160  Identities=15%  Similarity=0.046  Sum_probs=121.1

Q ss_pred             hcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          114 EQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      .++.-|+.+++-....+           +-+++.+|+|++|+..|.-+.+.+--+.+.+.+|+.+++.+|.         
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---------  106 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---------  106 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---------
Confidence            45566666665554444           3467889999999999999988777788999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLH--------------------DAFYNWAIAISDR------AKMRGRTKEAEELWKQA  236 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~--------------------~a~~~lg~~~~~~------~~~~g~~~eA~~~~~~A  236 (498)
                           |.+|...-.+|    |+++                    ..+.+|+.+..++      .+++.       .|++|
T Consensus       107 -----Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-------HYQeA  170 (557)
T KOG3785|consen  107 -----YIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-------HYQEA  170 (557)
T ss_pred             -----HHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-------HHHHH
Confidence                 99998776654    3322                    2223333333221      11222       35666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      +..|.+.+.-+|+......+++.+|+++.-|          +-+.+.+.--++..|+..-+.+.++-.++++
T Consensus       171 IdvYkrvL~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  171 IDVYKRVLQDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             HHHHHHHHhcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence            6899999999999999999999999999999          9999999999999999999888888777665

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.36  E-value=9.1e-07  Score=87.60  Aligned_cols=160  Identities=18%  Similarity=0.111  Sum_probs=110.3

Q ss_pred             HhhccHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHh-cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC--C-
Q 010864          135 SRQRILTFAAKRYANAIERN--PED----YDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T-  204 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~--P~~----~~a~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p--~-  204 (498)
                      ++..++++|+.+|++|+.+.  -++    +.++..+|.+|... |+              +++|+++|++|+.+..  + 
T Consensus        85 ~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~  150 (282)
T PF14938_consen   85 YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD--------------YEKAIEYYQKAAELYEQEGS  150 (282)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----------------HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCC
Confidence            45569999999999999863  222    56788999999888 88              9999999999999822  1 


Q ss_pred             ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          205 ---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN---W----NSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       205 ---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~---P----~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                         ...++.++|.++..    +|+|++|++       .|++.....   +    +....+...+.++...|++       
T Consensus       151 ~~~a~~~~~~~A~l~~~----l~~y~~A~~-------~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~-------  212 (282)
T PF14938_consen  151 PHSAAECLLKAADLYAR----LGRYEEAIE-------IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY-------  212 (282)
T ss_dssp             HHHHHHHHHHHHHHHHH----TT-HHHHHH-------HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H-------
T ss_pred             hhhHHHHHHHHHHHHHH----hCCHHHHHH-------HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH-------
Confidence               23577899999999    999999995       555555432   1    1224567888899999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          275 TIVRTAISKFRAAIQLQFDFH-----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~-----~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                         -.|...|++....+|.+.     .....|-.++.....                 +.+..++..|.+...||+-
T Consensus       213 ---v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~-----------------e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  213 ---VAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV-----------------EAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             ---HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C-----------------CCHHHHCHHHTTSS---HH
T ss_pred             ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHcccCccHHH
Confidence               999999999999998763     334444444333221                 1267777777776666553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.36  E-value=2.1e-05  Score=87.92  Aligned_cols=150  Identities=11%  Similarity=-0.108  Sum_probs=101.1

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHH
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY  210 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~  210 (498)
                      ..+.+.|++++|...|++.   .+.+..+|+.+...|.+.|+              +++|+..|++..+..- -+...|.
T Consensus       267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~--------------~~eA~~lf~~M~~~g~~pd~~t~~  329 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY--------------SEEALCLYYEMRDSGVSIDQFTFS  329 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Confidence            3578899999999999875   45688999999999999999              9999999999877532 2456788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchH-------------------
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPA-------------------  270 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a-------------------  270 (498)
                      .+..++.+    .|++++|.+.       +...++.. +.+..+++.|...|.+.|++++|                   
T Consensus       330 ~ll~a~~~----~g~~~~a~~i-------~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI  398 (697)
T PLN03081        330 IMIRIFSR----LALLEHAKQA-------HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI  398 (697)
T ss_pred             HHHHHHHh----ccchHHHHHH-------HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence            88888888    8888888853       33333333 23444555555555555555333                   


Q ss_pred             --HhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcch
Q 010864          271 --REKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       271 --~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~  310 (498)
                        +.+.|+.++|+..|++.++.  .|+ ...+..+-.++...|.
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~  441 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGL  441 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCc
Confidence              12233447777777776653  344 4455555555655554

>PLN03077 Protein ECB2; Provisional

Probab=98.32  E-value=3.9e-05  Score=87.82  Aligned_cols=147  Identities=10%  Similarity=-0.007  Sum_probs=103.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--CCCCHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFY  210 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~p~~~~a~~  210 (498)
                      .+.+.|++++|...|+..    +.+..+|+.+...|...|+              .++|++.|++..+.  .|+ ...|.
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--------------~~~A~~lf~~M~~~g~~Pd-~~T~~  593 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--------------GSMAVELFNRMVESGVNPD-EVTFI  593 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCC-cccHH
Confidence            456678888888888775    5567788888888888888              88888888877764  344 34455


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhcCcchH-----------------
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV---QLNWNSPQALNNWGLALQELSAIVPA-----------------  270 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~~a-----------------  270 (498)
                      .+-.++.+    .|++++|.+       .|+...   .+.| +...++.+..+|.+.|++++|                 
T Consensus       594 ~ll~a~~~----~g~v~ea~~-------~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~  661 (857)
T PLN03077        594 SLLCACSR----SGMVTQGLE-------YFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG  661 (857)
T ss_pred             HHHHHHhh----cChHHHHHH-------HHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH
Confidence            55556767    788777774       444443   2234 346777777777777777555                 


Q ss_pred             -----HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          271 -----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       271 -----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                           ....++.+.+....++.++++|++...|..|+.+|...|+
T Consensus       662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence                 1224555777777888888888888888888888888887

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=2e-06  Score=78.90  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      +..++.+|..|-.+|-              ..-|.-.|.+++.+.|+.+++++.||.-+..    .|+|+.|.       
T Consensus        65 A~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~-------  119 (297)
T COG4785          65 AQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY-------  119 (297)
T ss_pred             HHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH-------
Confidence            3456667777777776              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                      ..|...+++||.+-.++.|.|..++--|++          .-|.+.|.+-.+-+|+++
T Consensus       120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         120 EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCCh
Confidence            699999999999999999999999999999          888888888888888876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=2.1e-05  Score=80.79  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ++.|+..|++..+.+|+   +...++.++..    .++-.+|+       ..+.+++..+|.+...+...+..|...+++
T Consensus       185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            99999999999998876   55668888887    88887777       788999999999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                                +.|+...++++++.|++...|+.|+.+|..+|+
T Consensus       251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence                      999999999999999999999999999999998

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=5e-06  Score=82.41  Aligned_cols=152  Identities=15%  Similarity=0.094  Sum_probs=114.1

Q ss_pred             hhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          113 AEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      .++++.|+.++.+.....     -..+.+.++++.|...++..-+.+.+..-....-+++....|.            +.
T Consensus       115 ~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------e~  182 (290)
T PF04733_consen  115 EGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------EK  182 (290)
T ss_dssp             CCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------TC
T ss_pred             cCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------hh
Confidence            355666666665542222     2346778999999999999988887766555555666666663            23


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +.+|.-.|+......+..+..++.++.++..    +|++++|.       ..+.+++..+|+++.++.|+..+...+|+.
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            8999999999888778899999999999999    99999999       588889999999999999999999999986


Q ss_pred             chHHhhhhhHHH-HHHHHHHHHHhcCCCHHH
Q 010864          268 VPAREKQTIVRT-AISKFRAAIQLQFDFHRA  297 (498)
Q Consensus       268 ~~a~~~~~~~~~-Ai~~~~~Al~l~P~~~~a  297 (498)
                                .+ +.+++.+....+|+++.+
T Consensus       252 ----------~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  252 ----------TEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             ----------CHHHHHHHHHCHHHTTTSHHH
T ss_pred             ----------hhHHHHHHHHHHHhCCCChHH
Confidence                      44 555777777788987754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=8.3e-05  Score=77.41  Aligned_cols=185  Identities=15%  Similarity=0.038  Sum_probs=133.3

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      .+++++|....++++...          --+....++|++|+...+.-....-.+ ...+..+.|++++++         
T Consensus        25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk---------   94 (652)
T KOG2376|consen   25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK---------   94 (652)
T ss_pred             chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc---------
Confidence            367778888777777763          123456788888884443322211111 222788999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHH-----
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------TKN-----  239 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A------------------l~~-----  239 (498)
                           .++|+..++   .+++.+..+....|.++.+    +|+|++|.+.|+.-                  ...     
T Consensus        95 -----~Dealk~~~---~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   95 -----LDEALKTLK---GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             -----HHHHHHHHh---cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence                 999999998   5677777788888888888    99999999888531                  111     


Q ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--------cCC-------CHHHHHHHHH
Q 010864          240 YEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFD-------FHRAIYNLGT  303 (498)
Q Consensus       240 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--------~P~-------~~~a~~~Lg~  303 (498)
                      ..+.+...|. ..+.++|.+.++...|+|          .+|++.+++|+++        +-+       -..+...|+.
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky----------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay  232 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKY----------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY  232 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence            1222333344 667899999999999999          9999999999654        111       1346778899


Q ss_pred             HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ++..+|+                   -.+|...|...++.+|.+.
T Consensus       233 VlQ~~Gq-------------------t~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  233 VLQLQGQ-------------------TAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHhcc-------------------hHHHHHHHHHHHHhcCCCc
Confidence            9999998                   6788888888888888776

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=3.5e-06  Score=78.42  Aligned_cols=91  Identities=21%  Similarity=0.101  Sum_probs=83.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ++..++|+.||.+|.++|.++|..+.-|.|.+.+|+++.+              ++.......+|+++.|+...+++.||
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            5667899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      .++..    ...|.+|+..+++|...++.
T Consensus        86 ~~~l~----s~~~~eaI~~Lqra~sl~r~  110 (284)
T KOG4642|consen   86 QWLLQ----SKGYDEAIKVLQRAYSLLRE  110 (284)
T ss_pred             HHHHh----hccccHHHHHHHHHHHHHhc
Confidence            99999    99999999766666555553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.23  E-value=0.00019  Score=68.25  Aligned_cols=162  Identities=20%  Similarity=0.128  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHH
Q 010864          117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACK  193 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~  193 (498)
                      ..+..+++.+...     .+.|++++|+..|+......|..   ..+...++.++++.++              |++|+.
T Consensus        32 ~p~~~LY~~g~~~-----L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~   92 (254)
T COG4105          32 LPASELYNEGLTE-----LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALA   92 (254)
T ss_pred             CCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHH
Confidence            3456777777655     66899999999999999988765   4689999999999999              999999


Q ss_pred             HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH---HH-------------
Q 010864          194 KYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ---AL-------------  254 (498)
Q Consensus       194 ~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~---a~-------------  254 (498)
                      ..++-+++.|++.   .++|..|.++...   ..+...=...-.+|+..|+..++.-|++.-   +.             
T Consensus        93 ~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105          93 YIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999988754   4788888887652   222222223335677899999999998532   21             


Q ss_pred             -HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010864          255 -NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       255 -~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~  310 (498)
                       ..+|..|.+.|.+          -.|+.-++..++--|+.   .+++..+..+|..+|-
T Consensus       170 Em~IaryY~kr~~~----------~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl  219 (254)
T COG4105         170 EMAIARYYLKRGAY----------VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL  219 (254)
T ss_pred             HHHHHHHHHHhcCh----------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence             2334445555555          99999999999986665   4678888999999995

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.21  E-value=7.1e-05  Score=86.14  Aligned_cols=163  Identities=12%  Similarity=0.007  Sum_probs=126.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----
Q 010864          134 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----  204 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----  204 (498)
                      +...|++++|...++++++..+..     ..++..+|.++...|+              +++|...+++++.+...    
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~  527 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVY  527 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcch
Confidence            346799999999999999865543     2466889999999999              99999999999987432    


Q ss_pred             --CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          205 --LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       205 --~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                        ...++.++|.++..    .|++++|...+++++...++.-... +....++..+|.+++..|++          ++|.
T Consensus       528 ~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~  593 (903)
T PRK04841        528 HYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAE  593 (903)
T ss_pred             HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence              13466788999988    9999999988888877666532111 22345577889999999999          9999


Q ss_pred             HHHHHHHHhcCC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          282 SKFRAAIQLQFD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       282 ~~~~~Al~l~P~-----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      ..+++++.+...     ...++.++|.++...|+                   +..|...+.++..+
T Consensus       594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~l~~a~~~  641 (903)
T PRK04841        594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD-------------------LDNARRYLNRLENL  641 (903)
T ss_pred             HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHH
Confidence            999999886322     35567778999999998                   67777777777665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.20  E-value=2.8e-05  Score=74.49  Aligned_cols=105  Identities=24%  Similarity=0.294  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      -.|+.|.-++..|+              |..|...|..-++..|+.   +.++|.||.++..    +|++.+|.      
T Consensus       143 ~~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa------  198 (262)
T COG1729         143 KLYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA------  198 (262)
T ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH------
Confidence            38999999999999              999999999999999984   6799999999999    99999999      


Q ss_pred             HHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          237 TKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       237 l~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                       ..|..+++-.|+   -+++++.||.++.++|+.          ++|...|++.++.-|+...+..
T Consensus       199 -~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         199 -YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             -HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence             577777766655   578999999999999999          9999999999999999876654

>PLN03077 Protein ECB2; Provisional

Probab=98.20  E-value=0.00015  Score=83.03  Aligned_cols=175  Identities=14%  Similarity=0.004  Sum_probs=89.3

Q ss_pred             hhcHHHHHHHHHHhhhcc-------hhhHHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          113 AEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      .+..++|..+|......+       -.++.+.|++++|+..|++..+..  |+.. .+..+=..+...|+          
T Consensus       336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~----------  404 (857)
T PLN03077        336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGD----------  404 (857)
T ss_pred             cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccch----------
Confidence            456666666665543322       344666677777777776654432  4432 22222234444444          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------HHHH
Q 010864          184 KDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK------------------------QATK  238 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~------------------------~Al~  238 (498)
                          +++|.+.+..+++.... +..+++.|-..|.+    .|++++|.+.|+                        +|+.
T Consensus       405 ----~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        405 ----LDVGVKLHELAERKGLISYVVVANALIEMYSK----CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             ----HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence                55555555544444222 23344444444444    444444444332                        2335


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH-------------------------HhhhhhHHHHHHHHHHHHHhcCC
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPA-------------------------REKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a-------------------------~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .|++.+..-+-+..++..+-.++.+.|..+.+                         +.+.|++++|...|++.    +.
T Consensus       477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~  552 (857)
T PLN03077        477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK  552 (857)
T ss_pred             HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC
Confidence            55555533222334444444444444443322                         33445558888777765    45


Q ss_pred             CHHHHHHHHHHHHHcch
Q 010864          294 FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~  310 (498)
                      +...|+.+...|...|+
T Consensus       553 d~~s~n~lI~~~~~~G~  569 (857)
T PLN03077        553 DVVSWNILLTGYVAHGK  569 (857)
T ss_pred             ChhhHHHHHHHHHHcCC
Confidence            57778888888877776

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=4.1e-06  Score=77.98  Aligned_cols=83  Identities=23%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .|..|+.+|.+|+.++|..+..|.|.+.++.+    +.+++...       ..+++|++++|+.+.+++.+|.++.+...
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            49999999999999999999999999999999    77777777       79999999999999999999999999999


Q ss_pred             cchHHhhhhhHHHHHHHHHHHHHh
Q 010864          267 IVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      |          ++||..+.+|..+
T Consensus        94 ~----------~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 Y----------DEAIKVLQRAYSL  107 (284)
T ss_pred             c----------cHHHHHHHHHHHH
Confidence            9          9999999999765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.18  E-value=0.0001  Score=84.93  Aligned_cols=189  Identities=15%  Similarity=0.038  Sum_probs=135.4

Q ss_pred             hhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH
Q 010864          113 AEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE--------DYDALYNWALVL  168 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~  168 (498)
                      .++++.|...+.++....                ...+...|++++|...+++++.+...        ....+..+|.++
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            466677766666655321                22345679999999999999876321        234566789999


Q ss_pred             HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864          169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  243 (498)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A  243 (498)
                      +..|+              +++|...+++++.+...     ...++.++|.++..    .|++++|...++++...+...
T Consensus       584 ~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        584 WEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcc
Confidence            99999              99999999999887332     34567778888888    999999998887776543321


Q ss_pred             H--------------------------------hcCC--CC----HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          244 V--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       244 l--------------------------------~l~P--~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      -                                ...+  ..    ...+.++|.++...|++          ++|+..|+
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~  715 (903)
T PRK04841        646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEIILE  715 (903)
T ss_pred             cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHH
Confidence            0                                0000  00    11145677777777777          99999999


Q ss_pred             HHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          286 AAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       286 ~Al~l~------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      +++...      .+...++..+|.++...|+                   ..+|..++.+|+++.....
T Consensus       716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-------------------~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        716 ELNENARSLRLMSDLNRNLILLNQLYWQQGR-------------------KSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhCccc
Confidence            999863      2334678889999999998                   7899999999998875544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.17  E-value=3.6e-05  Score=73.78  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=92.7

Q ss_pred             HHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864          121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  197 (498)
Q Consensus       121 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~  197 (498)
                      ..|+.++..     ++.|+|..|...|..-+...|+.   +.++|+||.+++.+|+              |+.|...|..
T Consensus       143 ~~Y~~A~~~-----~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~  203 (262)
T COG1729         143 KLYNAALDL-----YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFAR  203 (262)
T ss_pred             HHHHHHHHH-----HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHH
Confidence            356666554     66899999999999999999876   6899999999999999              9999999999


Q ss_pred             HHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          198 ATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       198 Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                      +++-.|+   -+++++.||.++.+    +|+.++|.       ..|+++++..|+...+..-
T Consensus       204 ~~k~~P~s~KApdallKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         204 VVKDYPKSPKAPDALLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHhCCCCCCChHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHHH
Confidence            9999776   46899999999999    99999999       6889999999988766543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.15  E-value=7.5e-05  Score=65.05  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      .+..++.-|...++.|+              |++|++.|+......|.   ...+...||.+|.+    .+++.+|+   
T Consensus         9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~---   67 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI---   67 (142)
T ss_pred             CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence            35678999999999999              99999999999999876   45789999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC--cc---hHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864          234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSA--IV---PAREKQTIVRTAISKFRAAIQLQFDFHRA  297 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~--~~---~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a  297 (498)
                          ..+++-++++|+++   .+++..|.++.++..  ++   ......+....|...|++.|+.-|+..-+
T Consensus        68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                79999999998864   689999999988765  00   01233455699999999999999987643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.13  E-value=5.2e-05  Score=66.03  Aligned_cols=101  Identities=25%  Similarity=0.246  Sum_probs=82.7

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HH
Q 010864          135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA  208 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a  208 (498)
                      .+.|+|++|++.|+......|..   ..+...+|.+|+..++              +++|+..|++.++++|++.   .+
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence            56899999999999999988765   5789999999999999              9999999999999999865   58


Q ss_pred             HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010864          209 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA  253 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~--------~~eA~~~~~~Al~~~~~Al~l~P~~~~a  253 (498)
                      ++..|.++..    +..        .+.=....++|+..|++.+..-|++..+
T Consensus        87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999988    543        2222223355668999999999987644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=0.00045  Score=62.35  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHH
Q 010864          143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAISDRAK  221 (498)
Q Consensus       143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~~~~a~~~lg~~~~~~~~  221 (498)
                      ...-..+.++..|.. .-.+.||..+.++|+              +.+|...|++++. +.-+++..+..++.+.+.   
T Consensus        75 ~~Rea~~~~~~ApTv-qnr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa---  136 (251)
T COG4700          75 HLREATEELAIAPTV-QNRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA---  136 (251)
T ss_pred             HHHHHHHHHhhchhH-HHHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHh---
Confidence            333344445555554 446789999999999              9999999999986 466788889999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          222 MRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       222 ~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                       .+++.+|.       ..+++..+.+|.  .+.....+|.+|..+|++          .+|...|+.++..-|+ +.+..
T Consensus       137 -~~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~~ar~  197 (251)
T COG4700         137 -IQEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-PQARI  197 (251)
T ss_pred             -hccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-HHHHH
Confidence             99999998       688888888886  678888999999999999          9999999999999988 55555


Q ss_pred             HHHHHHHHcch
Q 010864          300 NLGTVLYGLAE  310 (498)
Q Consensus       300 ~Lg~~~~~~g~  310 (498)
                      ..+..+.++|+
T Consensus       198 ~Y~e~La~qgr  208 (251)
T COG4700         198 YYAEMLAKQGR  208 (251)
T ss_pred             HHHHHHHHhcc
Confidence            56888888886

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.10  E-value=0.00014  Score=65.60  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             hHHhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--CHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAF  209 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~  209 (498)
                      .....|++.+|...|++++. +..+++..+..++.+.+..++              +..|...+++..+.+|.  .++.+
T Consensus        98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCch
Confidence            35678999999999999986 678899999999999999999              99999999999999986  67788


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ..+|.+|..    +|++.+|..       .|+.++...| .+++...++..+..+|+.
T Consensus       164 Ll~aR~laa----~g~~a~Aes-------afe~a~~~yp-g~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         164 LLFARTLAA----QGKYADAES-------AFEVAISYYP-GPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             HHHHHHHHh----cCCchhHHH-------HHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence            999999999    999999995       5555555555 578888999999999988

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.09  E-value=7.9e-05  Score=76.55  Aligned_cols=192  Identities=20%  Similarity=0.127  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864          116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  195 (498)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  195 (498)
                      ...|.+++.++-        +..+...-+++-.+||+++|+.+++|..|+.-...  .              ..+|.+.|
T Consensus       168 ~r~Aq~IMq~AW--------RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~  223 (539)
T PF04184_consen  168 LRPAQEIMQKAW--------RERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELL  223 (539)
T ss_pred             cCHHHHHHHHHH--------hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHH
Confidence            345555555543        35677788999999999999999999988764322  1              55666666


Q ss_pred             HHHHHhCCC-------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-
Q 010864          196 DEATRLCPT-------------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-  249 (498)
Q Consensus       196 ~~Al~l~p~-------------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-  249 (498)
                      +++++....                         ...+-..||++..+    +|+.+||+       +.|+..++.+|. 
T Consensus       224 rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~  292 (539)
T PF04184_consen  224 RQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNL  292 (539)
T ss_pred             HHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCcc
Confidence            666654110                         12345678888888    99999999       688888887775 


Q ss_pred             -CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864          250 -SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  327 (498)
Q Consensus       250 -~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~  327 (498)
                       +..++.||-.+|..++.|          .++...+.+-=.+ -|+.+.+.|.-+.+..+...+..... ...-...+++
T Consensus       293 ~~l~IrenLie~LLelq~Y----------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e-~a~rRGls~a  361 (539)
T PF04184_consen  293 DNLNIRENLIEALLELQAY----------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE-AASRRGLSPA  361 (539)
T ss_pred             chhhHHHHHHHHHHhcCCH----------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch-hhhhcCCChh
Confidence             567999999999999999          8888777774323 26667777776655443221110000 0000011222


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          328 ELYSQSAIYIAAAHALKPSYSVYSSALR  355 (498)
Q Consensus       328 ~~~~~A~~~~~~Al~l~p~~~~~~~~l~  355 (498)
                        -..|.+.+.+|.+.+|..+.|...++
T Consensus       362 --e~~aveAi~RAvefNPHVp~YLLe~K  387 (539)
T PF04184_consen  362 --EMNAVEAIHRAVEFNPHVPKYLLEMK  387 (539)
T ss_pred             --HHHHHHHHHHHHHhCCCCchhhhccC
Confidence              24588899999999999998765543

The molecular function of this protein is uncertain.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00053  Score=65.05  Aligned_cols=164  Identities=14%  Similarity=0.098  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDR  219 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~a~~~lg~~~~~~  219 (498)
                      +..++.+++-+.      ...+.+..++...+.              |.-.+..|.+.++.+ |..+.....||.+-++ 
T Consensus       166 ESsv~lW~KRl~------~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-  224 (366)
T KOG2796|consen  166 ESSIRLWRKRLG------RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-  224 (366)
T ss_pred             hhHHHHHHHHHH------HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-
Confidence            344555555432      355666677777777              777777777777776 4566677777777777 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864          220 AKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA  297 (498)
Q Consensus       220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a  297 (498)
                         .|+.+.|...|+...+.   +-.++  -.+.-.+.|.+.++.-.+++          ..|...|.++++.+|.++.+
T Consensus       225 ---~GD~k~a~~yf~~vek~---~~kL~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  225 ---IGDIKTAEKYFQDVEKV---TQKLDGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             ---cccHHHHHHHHHHHHHH---HhhhhccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhh
Confidence               77777777544433221   11222  22344556666666666666          77777777788888877877


Q ss_pred             HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       298 ~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      .+|.+.|+..+|+                   ...|++.++.++...|....-.+.+--++.+
T Consensus       289 ~NnKALcllYlg~-------------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm  332 (366)
T KOG2796|consen  289 NNNKALCLLYLGK-------------------LKDALKQLEAMVQQDPRHYLHESVLFNLTTM  332 (366)
T ss_pred             hchHHHHHHHHHH-------------------HHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence            7888887777777                   6777777777777777765443333333333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.00015  Score=68.00  Aligned_cols=120  Identities=16%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----------hcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-----------QLNWNSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-----------~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                      ..++..-|+-++.    .|+|.+|...|+.|+.+.+...           +++......+.|+..|+...|+|       
T Consensus       178 v~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~-------  246 (329)
T KOG0545|consen  178 VPVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY-------  246 (329)
T ss_pred             hHHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH-------
Confidence            3567778888888    9999999999999999888764           23333456689999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH-HHHHH
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VYSSA  353 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~~~~~  353 (498)
                         -+++++....|..+|++..+++..|.++...=+                   ..+|...|.++++++|... ....-
T Consensus       247 ---yevleh~seiL~~~~~nvKA~frRakAhaa~Wn-------------------~~eA~~D~~~vL~ldpslasvVsrE  304 (329)
T KOG0545|consen  247 ---YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN-------------------EAEAKADLQKVLELDPSLASVVSRE  304 (329)
T ss_pred             ---HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC-------------------HHHHHHHHHHHHhcChhhHHHHHHH
Confidence               999999999999999999999999998876655                   5788899999999999876 44455


Q ss_pred             HHHHH
Q 010864          354 LRLVR  358 (498)
Q Consensus       354 l~~~~  358 (498)
                      ++++.
T Consensus       305 lr~le  309 (329)
T KOG0545|consen  305 LRLLE  309 (329)
T ss_pred             HHHHH
Confidence            55443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.97  E-value=1.4e-05  Score=55.37  Aligned_cols=44  Identities=25%  Similarity=0.175  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      +.++..+|.+|..+|++          ++|+..|+++++.+|+++.+|..||.+
T Consensus         1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35789999999999999          999999999999999999999999863

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.97  E-value=1.6e-05  Score=55.05  Aligned_cols=43  Identities=21%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      +++|+.+|.+|..+|+              +++|++.|+++++.+|++..+|..||.
T Consensus         1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999              999999999999999999999999885

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.00025  Score=67.15  Aligned_cols=138  Identities=17%  Similarity=0.190  Sum_probs=115.3

Q ss_pred             hHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH----hCC--CC
Q 010864          133 GRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TL  205 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~----l~p--~~  205 (498)
                      ++...|+|.-....+.+.++.+ |.++.....||.+-.+.|+              .+.|..+|++.-+    ++-  ..
T Consensus       186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchh
Confidence            3455789999999999999998 7788899999999999999              9999988884433    332  23


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      ...+.|.+.++.-    .+++.+|.       ..|.+.+..||.++.+.||.+.|+..+|+.          ..|++..+
T Consensus       252 ~~V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e  310 (366)
T KOG2796|consen  252 IMVLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLE  310 (366)
T ss_pred             HHHHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHH
Confidence            4567788888877    88888888       799999999999999999999999999999          99999999


Q ss_pred             HHHHhcCCCH---HHHHHHHHHH
Q 010864          286 AAIQLQFDFH---RAIYNLGTVL  305 (498)
Q Consensus       286 ~Al~l~P~~~---~a~~~Lg~~~  305 (498)
                      .++++.|...   ...+||...|
T Consensus       311 ~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  311 AMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHhccCCccchhhhHHHHHHHHH
Confidence            9999999743   4556666554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.95  E-value=1e-05  Score=82.61  Aligned_cols=107  Identities=24%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ....+.|+.|+..|.+||+++|+.+..+.+++.++...+.              |..|+..+.+|++++|....+|+..|
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg   79 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRG   79 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeecc
Confidence            3456899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      .+.+.    ++++.+|.       ..|++...+.|+.+.+...+-.+-....
T Consensus        80 ~a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   80 TAVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             HHHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            99999    88888888       7999999999999999888887755433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.95  E-value=7e-06  Score=53.46  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +|++||+++|+++.+|++||.+|...|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~   29 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDY   29 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence            47899999999999999999999999999

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.93  E-value=9e-06  Score=67.98  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-----CCCeeeEeecC
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-----PGAGLCIETIH  457 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~  457 (498)
                      ...|+++||+|+...|..+-.....              .......|+|..+.+++++.+-.-+     ....|.|.|..
T Consensus        18 ~~nwKkRwFvL~~~~L~Yyk~~~~~--------------~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~   83 (106)
T cd01238          18 PLNYKERLFVLTKSKLSYYEGDFEK--------------RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE   83 (106)
T ss_pred             CCCceeEEEEEcCCEEEEECCCccc--------------ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC
Confidence            3489999999987777665432221              1124557899999888877665433     46778888766


Q ss_pred             CceeeeecChhhhhhHHHHHHHH
Q 010864          458 GPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ...|+.|+|.++.+.|++||+.|
T Consensus        84 r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          84 GTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhC
Confidence            66799999999999999999865

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.92  E-value=2e-05  Score=80.46  Aligned_cols=106  Identities=20%  Similarity=0.152  Sum_probs=97.5

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      ..|+.|+..|.+|++++|+++..+-+.+.++.+    .+.+..|+       ..+.+|++++|.+..+|+..|.+...++
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            349999999999999999999999999999999    99999998       7999999999999999999999999999


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  312 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~  312 (498)
                      ++          .+|...|++...+.|+++.+...+-.|-....+..
T Consensus        87 ~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   87 EF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             HH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            99          99999999999999999999888888766555433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.89  E-value=1.2e-05  Score=52.32  Aligned_cols=34  Identities=38%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHH
Q 010864          146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK  193 (498)
Q Consensus       146 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~  193 (498)
                      +|+++|+++|+++++|+++|.+|...|+              +++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~--------------~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGD--------------YEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcC--------------HHhhcC
Confidence            4899999999999999999999999999              998863

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.0004  Score=68.37  Aligned_cols=59  Identities=14%  Similarity=0.142  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       274 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                      .-++++||+.|++.+.-+|+.-....+++.||+++.-                   |.-+.+.+.--+.--|+.+...
T Consensus       164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY-------------------ydvsqevl~vYL~q~pdStiA~  222 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY-------------------YDVSQEVLKVYLRQFPDSTIAK  222 (557)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch-------------------hhhHHHHHHHHHHhCCCcHHHH
Confidence            4567999999999999999999999999999999875                   4455555555556667666433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0021  Score=61.29  Aligned_cols=141  Identities=16%  Similarity=0.065  Sum_probs=115.1

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+...+++++|.....+.     .+-++...--.++.++.+              ++-|....+++..++-+  ..+..|
T Consensus       117 i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQL  175 (299)
T KOG3081|consen  117 IYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQL  175 (299)
T ss_pred             HhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHH
Confidence            355678888888877763     344666666677888888              99999999999887654  456668


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      +.++.+.+...+++.+|.       -.|+..-+.-|-.+..++..+.+...+|+|          ++|...++.|+..++
T Consensus       176 A~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  176 AQAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDA  238 (299)
T ss_pred             HHHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccC
Confidence            888877554455666666       788888887788999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchh
Q 010864          293 DFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ++++.+.|+-.+-..+|++
T Consensus       239 ~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKD  257 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999974

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.74  E-value=0.00014  Score=71.25  Aligned_cols=89  Identities=20%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|.++.|++.|..+|.++|..+..|..++.++..+++              ...||..|..|++++|+.+.-|-..|.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~  190 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGY  190 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhH
Confidence            347889999999999999999999999999999999999              999999999999999999998888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW  248 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P  248 (498)
                      +...    +|.+.+|.       +.++.+++++-
T Consensus       191 A~rl----lg~~e~aa-------~dl~~a~kld~  213 (377)
T KOG1308|consen  191 AERL----LGNWEEAA-------HDLALACKLDY  213 (377)
T ss_pred             HHHH----hhchHHHH-------HHHHHHHhccc
Confidence            8887    99999988       67787777654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0037  Score=58.52  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=121.0

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      ++.+++|.+++.++.+.    +...+++..|=..|.++..+.-      +-+..|..-+.+|..- +             
T Consensus        27 ~~k~eeAadl~~~Aan~----yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~-------------   88 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANM----YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-D-------------   88 (288)
T ss_pred             CcchHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-C-------------
Confidence            46899999999998887    6667888889899988866531      1244556666666544 6             


Q ss_pred             hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          187 LLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                       ..+|+.++++++++..+..      .-+..+|.+|..   .+.+++.|+..|++|-.+|..-- .+..--.++.-.+..
T Consensus        89 -~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~y  163 (288)
T KOG1586|consen   89 -PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQY  163 (288)
T ss_pred             -hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHH
Confidence             9999999999999855432      345577777765   13677777766666666664211 111112334444444


Q ss_pred             HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHH
Q 010864          261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-------IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS  333 (498)
Q Consensus       261 l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a-------~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A  333 (498)
                      -..+++|          .+||..|++..+..-++.-.       ++.-|.|++..++                   .-.+
T Consensus       164 aa~leqY----------~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D-------------------~v~a  214 (288)
T KOG1586|consen  164 AAQLEQY----------SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD-------------------EVNA  214 (288)
T ss_pred             HHHHHHH----------HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc-------------------HHHH
Confidence            5566777          99999999999876666543       3344666666554                   3344


Q ss_pred             HHHHHHHHhcCCCHH
Q 010864          334 AIYIAAAHALKPSYS  348 (498)
Q Consensus       334 ~~~~~~Al~l~p~~~  348 (498)
                      ...+++-.+++|...
T Consensus       215 ~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  215 QRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHhcCCccc
Confidence            455566677888876

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.73  E-value=0.0014  Score=67.72  Aligned_cols=110  Identities=25%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------------------
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------------------  249 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------------------  249 (498)
                      .++-++.-++||+++|+.+.+|..|+.-.      .....+|+++|++|++.-+..+..+..                  
T Consensus       184 p~aRIkaA~eALei~pdCAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  184 PQARIKAAKEALEINPDCADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            88899999999999999999999987644      446789999999998887777754320                  


Q ss_pred             CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcchhHH
Q 010864          250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAEDTL  313 (498)
Q Consensus       250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~Lg~~~~~~g~~~~  313 (498)
                      ...+...||.+.+++|+.          ++|++.|+..++..|.  +..+++||-.+|..++....
T Consensus       258 ~~y~KrRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad  313 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD  313 (539)
T ss_pred             hhhhHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence            145567899999999999          9999999999998775  56799999999999997544

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00029  Score=66.07  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPT----------LHDAFYNWAIAISDR  219 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~----------~~~a~~~lg~~~~~~  219 (498)
                      ..++...|+-++.+|+              |++|...|+.|+..        .|.          ....+.|.+.|+.. 
T Consensus       178 v~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-  242 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-  242 (329)
T ss_pred             hHHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-
Confidence            4567888999999999              99999999999865        343          34577899999999 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864          220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI  298 (498)
Q Consensus       220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~  298 (498)
                         .|+|-+++       ..+...|..+|.|..+++..|.+...-=+.          ++|...|.++|+++|.-..+.
T Consensus       243 ---~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  243 ---KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             ---HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHHH
Confidence               99999998       699999999999999999999998877777          999999999999999865443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.0013  Score=63.44  Aligned_cols=125  Identities=18%  Similarity=0.145  Sum_probs=99.3

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH---------------
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY---------------  195 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~---------------  195 (498)
                      +.+++...+|..|..+|++.-.+.|....-.+..+..+++.+.              +..|+...               
T Consensus        51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i--------------~ADALrV~~~~~D~~~L~~~~lq  116 (459)
T KOG4340|consen   51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI--------------YADALRVAFLLLDNPALHSRVLQ  116 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHhcCCHHHHHHHHH
Confidence            3467788999999999999999999988777777777777766              33333322               


Q ss_pred             -HHHHH--------------hCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          196 -DEATR--------------LCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       196 -~~Al~--------------l~p--~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                       +.|+.              .-|  +.++..+|.|.++.+    .|++++|+       +-|+.|++...-++-.-+|++
T Consensus       117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAv-------qkFqaAlqvsGyqpllAYniA  185 (459)
T KOG4340|consen  117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAV-------QKFQAALQVSGYQPLLAYNLA  185 (459)
T ss_pred             HHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHH-------HHHHHHHhhcCCCchhHHHHH
Confidence             22222              234  567889999999999    99999999       688888988888889999999


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .+.++.|++          +.|+++..+.++.
T Consensus       186 LaHy~~~qy----------asALk~iSEIieR  207 (459)
T KOG4340|consen  186 LAHYSSRQY----------ASALKHISEIIER  207 (459)
T ss_pred             HHHHhhhhH----------HHHHHHHHHHHHh
Confidence            999999999          9999988877764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=6.6e-05  Score=48.61  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      +.+|+++|.++..+|++          ++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence            46899999999999999          99999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.66  E-value=8.2e-05  Score=48.16  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      +.+|+++|.+|..+|+              +++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence            4789999999999999              999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=97.65  E-value=4.2e-05  Score=62.76  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  463 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  463 (498)
                      ..|.++||+|+...|...-...                 ......|||.+|..++.+.+.+......|.|.|.....|+.
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~-----------------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~   81 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQ-----------------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQ   81 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCC-----------------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEE
Confidence            5899999999987776643211                 23467899999999998888776677899999888888999


Q ss_pred             ecChhhhhhHHHHHHH
Q 010864          464 ADSWEALDGWLDAIRL  479 (498)
Q Consensus       464 ~~~~~~~~~~~~a~~~  479 (498)
                      |+|..+.+.|.+||+=
T Consensus        82 a~s~~E~~~Wi~al~k   97 (98)
T cd01244          82 FEAPVEATDWLNALEK   97 (98)
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999999973

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.64  E-value=0.0022  Score=53.55  Aligned_cols=91  Identities=21%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH--
Q 010864          186 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP--  251 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~--  251 (498)
                      +.|++|...|++|+.+..+            ++-+|-.|+.++..    +|+|++++..-+.|+.+|++-=+++.+..  
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            4599999999999998433            24577888889999    99999999999999999999999998765  


Q ss_pred             --HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          252 --QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       252 --~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                        .+.++.+.++..+|+.          ++|+..|+.+-+.
T Consensus        99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM  129 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence              4557899999999999          9999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.62  E-value=6.7e-05  Score=62.18  Aligned_cols=96  Identities=23%  Similarity=0.375  Sum_probs=66.5

Q ss_pred             hccccCCCCCCCC----CCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          368 AGYLTAPPAGIPV----APHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       368 ~~~~~~~~~~~~~----~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      .|||..+|++...    --...|+++||+|.+.++..+-...+..              ..+...|+|....+|..+.+.
T Consensus         2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--------------~~p~G~IdL~~~~~V~~~~~~   67 (104)
T cd01236           2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--------------TLPQGTIDMNQCTDVVDAEAR   67 (104)
T ss_pred             cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--------------cccceEEEccceEEEeecccc
Confidence            4677766666542    3467899999999865554442211100              122346888888888766654


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010864          444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR  478 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  478 (498)
                      .- .+++|+|.|..-..||.|++.++.++|..+|.
T Consensus        68 ~~-~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          68 TG-QKFSICILTPDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             cC-CccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence            32 46899999877667999999999999999985

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0014  Score=64.11  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~  209 (498)
                      +++.++|..|+.+|.+.|+....+    +..|.|++.+.+.+|+              |..|+..+.+|+.++|.+..++
T Consensus        91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~Ka~  156 (390)
T KOG0551|consen   91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHLKAY  156 (390)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchhhhh
Confidence            788999999999999999987554    4568999999999999              9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      +.-+.|+..    +.++++|....+.
T Consensus       157 ~R~Akc~~e----Le~~~~a~nw~ee  178 (390)
T KOG0551|consen  157 IRGAKCLLE----LERFAEAVNWCEE  178 (390)
T ss_pred             hhhhHHHHH----HHHHHHHHHHHhh
Confidence            999999999    9998888854433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.60  E-value=0.00015  Score=46.71  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      +.+|+.+|.+|+.+|+              +++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence            5789999999999999              999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00063  Score=69.50  Aligned_cols=193  Identities=16%  Similarity=0.049  Sum_probs=138.5

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH-HhCCC--------CH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPT--------LH  206 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al-~l~p~--------~~  206 (498)
                      ...++.-+..-.+.+..+..+.+.+++..+..++-.|+              |.+|.+.+...- .-.|.        ..
T Consensus       218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~c  283 (696)
T KOG2471|consen  218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSSC  283 (696)
T ss_pred             HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhhh
Confidence            34455555555566666667888999999999999999              999988765431 12222        22


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C---------CCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W---------NSPQALNNWGLALQELSAIVPAREKQT  275 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P---------~~~~a~~~lg~~l~~~g~~~~a~~~~~  275 (498)
                      .+|+|||.++..    +|.|.-+..+|.+|+..+..-+...  |         ..-..++|.|..|...|+.        
T Consensus       284 if~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP--------  351 (696)
T KOG2471|consen  284 IFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP--------  351 (696)
T ss_pred             eeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc--------
Confidence            457899999999    9999999988888886554444333  2         3567899999999999999        


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccC---------CC---------------------CCCCCC
Q 010864          276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG---------TV---------------------NPREVS  325 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~---------~~---------------------~~~~~~  325 (498)
                        ..|.++|.+++..-..++..|..|+.|+....+...-...         ..                     .....-
T Consensus       352 --l~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~  429 (696)
T KOG2471|consen  352 --LLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQL  429 (696)
T ss_pred             --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCC
Confidence              9999999999999999999999999998765432111100         00                     011122


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          326 PNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       326 ~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      |.-..+-|..|+..++-+-|....+...+..
T Consensus       430 p~~slefA~vCLrnal~Ll~e~q~~~~~~~~  460 (696)
T KOG2471|consen  430 PKLSLEFARVCLRNALYLLNEKQDLGSILSV  460 (696)
T ss_pred             CccccHHHHHHHHhhhhcCchhhcchhhhhh
Confidence            3335678899999999998877665555444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.57  E-value=0.00015  Score=46.73  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      +.+|+++|.++..+|++          ++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence            46899999999999999          99999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0006  Score=66.67  Aligned_cols=101  Identities=17%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---PT-LHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      +.-|..-|+-|+...+              |..|+.+|.++|+..   |+ ++..|.|.+.+...    .|+|..++   
T Consensus        81 Aen~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l---  139 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL---  139 (390)
T ss_pred             HHHHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH---
Confidence            3445567888999998              999999999999984   43 56789999999988    77777766   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                          ..+.+++.++|.+..+++.=+.|+.++.++          ++|..+++..+.++-+
T Consensus       140 ----~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  140 ----NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDE  185 (390)
T ss_pred             ----HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHH
Confidence                799999999999999999999999999999          8888888887776544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.50  E-value=0.015  Score=59.18  Aligned_cols=188  Identities=14%  Similarity=0.025  Sum_probs=122.1

Q ss_pred             HHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCCC
Q 010864          134 RSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTL  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~---~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~~  205 (498)
                      +....+|+.-+.+.+..-.+    -++.+...+.+|.++.+   .|+              .++|+..+..++. ..+.+
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~  216 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPD  216 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCC
Confidence            34457777777777766555    45667788899999988   666              9999999999554 46678


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      ++.+..+|.+|.++....+.-+  .+.+++|+..|+++++++| +...-.|++.++...|...+....   +.+-...+.
T Consensus       217 ~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~e---l~~i~~~l~  290 (374)
T PF13281_consen  217 PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEE---LRKIGVKLS  290 (374)
T ss_pred             hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHH---HHHHHHHHH
Confidence            9999999999988544333222  2348899999999999996 445666777777777764111000   000000111


Q ss_pred             HHH-Hh----cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHH
Q 010864          286 AAI-QL----QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV---YSSALRLV  357 (498)
Q Consensus       286 ~Al-~l----~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~---~~~~l~~~  357 (498)
                      ..+ +.    .-.+-..+-.+..+..-.|+                   +..+..+++++++++|....   ....+.++
T Consensus       291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d-------------------~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li  351 (374)
T PF13281_consen  291 SLLGRKGSLEKMQDYWDVATLLEASVLAGD-------------------YEKAIQAAEKAFKLKPPAWELESTLENIKLI  351 (374)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHhhcCCcchhHHHHHHHHHHH
Confidence            111 11    11223334445566666676                   89999999999999988773   33444444


Q ss_pred             Hcc
Q 010864          358 RSM  360 (498)
Q Consensus       358 ~~~  360 (498)
                      +++
T Consensus       352 ~~~  354 (374)
T PF13281_consen  352 RHF  354 (374)
T ss_pred             HHH
Confidence            444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0057  Score=58.19  Aligned_cols=186  Identities=12%  Similarity=0.068  Sum_probs=151.9

Q ss_pred             hhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHH
Q 010864          112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA  191 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A  191 (498)
                      .+.++.++++++..++..       ..+-..|+.+-..+|.++|.+..+|..+-.++..++.             ++.+=
T Consensus        38 Yte~fr~~m~YfRAI~~~-------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E   97 (318)
T KOG0530|consen   38 YTEDFRDVMDYFRAIIAK-------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE   97 (318)
T ss_pred             echhHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence            457888999999887755       5555789999999999999999999999999988876             48888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~-eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      ++.+.+.++-+|++...|...-.+...    .|++. .-+       ...++++..+.+|--+|...-.+++..+.+   
T Consensus        98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~---  163 (318)
T KOG0530|consen   98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDY---  163 (318)
T ss_pred             HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhH---
Confidence            999999999999999999988888877    88777 444       588999999999999999999999999999   


Q ss_pred             HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                             +.-+.+..+.|+.+-.+-.+|+..=.+.....             ........+.-+.|..+.+.+.|+|...
T Consensus       164 -------~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~-------------~~~~~~~le~El~yt~~~I~~vP~NeSa  223 (318)
T KOG0530|consen  164 -------EDELAYADELLEEDIRNNSAWNQRYFVITNTK-------------GVISKAELERELNYTKDKILLVPNNESA  223 (318)
T ss_pred             -------HHHHHHHHHHHHHhhhccchhheeeEEEEecc-------------CCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence                   99999999999988877777776544433321             1223334566777888899999999843


Q ss_pred             H
Q 010864          351 S  351 (498)
Q Consensus       351 ~  351 (498)
                      .
T Consensus       224 W  224 (318)
T KOG0530|consen  224 W  224 (318)
T ss_pred             H
Confidence            3

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.49  E-value=0.027  Score=57.86  Aligned_cols=225  Identities=14%  Similarity=0.173  Sum_probs=129.0

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      .++++..|...|++||..+-.+...|...+.+-+....              ...|...+++|+.+-|.--..|+..-.+
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--------------vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--------------VNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--------------HhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            35666777777777777777777777777777666666              6777777777777777666666665555


Q ss_pred             HHHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 010864          216 ISDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP  269 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~--------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~  269 (498)
                      -..    +|+..-|.+.|                          +.|...|++-+-..| ....|..++..-.+.|+.  
T Consensus       151 EE~----LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~--  223 (677)
T KOG1915|consen  151 EEM----LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNV--  223 (677)
T ss_pred             HHH----hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcH--
Confidence            545    66666666433                          224466666666665 355666666666666665  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhHHhccCC-----CC---------------------CC
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDTLRTGGT-----VN---------------------PR  322 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~Lg~~~~~~g~~~~~~~~~-----~~---------------------~~  322 (498)
                              .-|...|++|++.--++. ....-.+.+.+..+.+...++..     ++                     +.
T Consensus       224 --------~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd  295 (677)
T KOG1915|consen  224 --------ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD  295 (677)
T ss_pred             --------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence                    777777777776533322 22222333433333222111100     00                     00


Q ss_pred             CCChhH-HHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHccCCchhhhhccccCCCCCCCCCCchhhhhh
Q 010864          323 EVSPNE-LYSQSAIYIAAAHALKPSYS-VYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS  389 (498)
Q Consensus       323 ~~~~~~-~~~~A~~~~~~Al~l~p~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~  389 (498)
                      ....++ ...+..--|+..++-+|-|- .+..-+++..+......++.-|-.+....+|......|+|.
T Consensus       296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY  364 (677)
T KOG1915|consen  296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY  364 (677)
T ss_pred             hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence            111111 23444556788888888776 56666666665544455566665554445556666678775

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.48  E-value=0.0037  Score=61.96  Aligned_cols=149  Identities=9%  Similarity=0.015  Sum_probs=106.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---
Q 010864          134 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---  205 (498)
                      +.+..++.+++.+-.-.+.+-...     ..++..+|.++..++.              |+++++.|++|+++.-++   
T Consensus        93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~D~  158 (518)
T KOG1941|consen   93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNNDDA  158 (518)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccCCc
Confidence            444566666776666666553322     2567778999999998              999999999999984432   


Q ss_pred             ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-C---CHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864          206 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-N---SPQALNNWGLALQELSAIVPAREKQTIVR  278 (498)
Q Consensus       206 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~  278 (498)
                         ..++..||..+..    +.++++|.-...+|.+.-+ .+.++- +   ...+++.++.+|..+|+.          -
T Consensus       159 ~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~-s~~l~d~~~kyr~~~lyhmaValR~~G~L----------g  223 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVN-SYGLKDWSLKYRAMSLYHMAVALRLLGRL----------G  223 (518)
T ss_pred             eeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHH-hcCcCchhHHHHHHHHHHHHHHHHHhccc----------c
Confidence               2467888999988    8888888854444433222 222221 1   245688999999999999          9


Q ss_pred             HHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchh
Q 010864          279 TAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       279 ~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      .|.++.++|.++.      +-+.....-+|.+|...|+.
T Consensus       224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~  262 (518)
T KOG1941|consen  224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL  262 (518)
T ss_pred             cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence            9999999998873      34466777789999998873

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.48  E-value=0.016  Score=55.29  Aligned_cols=156  Identities=19%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      -+.-|++-|....+.|+              +++|+..|++....+|..   ..+...++.++.+    .+++++|+   
T Consensus        33 p~~~LY~~g~~~L~~gn--------------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~---   91 (254)
T COG4105          33 PASELYNEGLTELQKGN--------------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLAL---   91 (254)
T ss_pred             CHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHH---
Confidence            46778999999999999              999999999999998875   4688999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHH---------
Q 010864          234 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAI---------  298 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~---------  298 (498)
                          ...++-+.+.|++   ..+++..|.++...  ++...+.+..-.+|+..|+..|..-|+..   .+.         
T Consensus        92 ----~~~drFi~lyP~~~n~dY~~YlkgLs~~~~--i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~  165 (254)
T COG4105          92 ----AYIDRFIRLYPTHPNADYAYYLKGLSYFFQ--IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA  165 (254)
T ss_pred             ----HHHHHHHHhCCCCCChhHHHHHHHHHHhcc--CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence                6888888888765   45678888875533  22235556667899999999999988863   111         


Q ss_pred             -----HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          299 -----YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       299 -----~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                           ..+|..|.+.|.                   +..|+..++..++--|+-.....+|..+.
T Consensus       166 LA~~Em~IaryY~kr~~-------------------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~  211 (254)
T COG4105         166 LAGHEMAIARYYLKRGA-------------------YVAAINRFEEVLENYPDTSAVREALARLE  211 (254)
T ss_pred             HHHHHHHHHHHHHHhcC-------------------hHHHHHHHHHHHhccccccchHHHHHHHH
Confidence                 223455555555                   67788888888887777666556655544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0078  Score=57.47  Aligned_cols=133  Identities=16%  Similarity=0.129  Sum_probs=110.0

Q ss_pred             hhhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          112 LAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      ..+.+++|++......+..     ..++.+..+++-|....++..+++-  -..+..||.++.....          +.+
T Consensus       120 ~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~----------gge  187 (299)
T KOG3081|consen  120 HDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLAT----------GGE  187 (299)
T ss_pred             cCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhc----------cch
Confidence            4578889999888866555     3456788999999999999988753  4566777777766543          112


Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .+..|.-.|+..-...|......+..+.+...    +|++++|.       ...+.+|..+++++.++.|+-.+-...|+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            38899999999988788888999999999999    99999999       68999999999999999999999999999


Q ss_pred             c
Q 010864          267 I  267 (498)
Q Consensus       267 ~  267 (498)
                      -
T Consensus       257 d  257 (299)
T KOG3081|consen  257 D  257 (299)
T ss_pred             C
Confidence            7

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.39  E-value=0.004  Score=54.88  Aligned_cols=75  Identities=25%  Similarity=0.306  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      ..++..++..+...|+              +++|+..+++++.++|.+-.+|..+-.+|..    .|+..+|+..|++..
T Consensus        62 ~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGD--------------YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHH
Confidence            3567778888889999              9999999999999999999999999999999    999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q 010864          238 KNYEKAVQLNWNS  250 (498)
Q Consensus       238 ~~~~~Al~l~P~~  250 (498)
                      ..+.+-+...|..
T Consensus       124 ~~l~~elg~~Ps~  136 (146)
T PF03704_consen  124 RRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHS----H
T ss_pred             HHHHHHhCcCcCH
Confidence            9999989888863

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.39  E-value=0.019  Score=56.90  Aligned_cols=180  Identities=23%  Similarity=0.161  Sum_probs=121.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIA  215 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-~~a~~~lg~~  215 (498)
                      ..+..+|+..|..  ..+..++.+.+++|..|..-.-          -..++.+|..+|.+|....-.. ..+.+++|.+
T Consensus        90 ~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~g----------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~  157 (292)
T COG0790          90 SRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRG----------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLA  157 (292)
T ss_pred             cccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCC----------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            5668899999994  4456789999999999976220          0113999999999998875443 4558999999


Q ss_pred             HHHHHHHcCCHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          216 ISDRAKMRGRTKEAEE-LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~-~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      |..    -. ...+.. ...+|+..|.++-...  +..+.+++|.+|..-.      .-..|+++|+.+|.+|-+...  
T Consensus       158 ~~~----g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~------Gv~~d~~~A~~wy~~Aa~~g~--  222 (292)
T COG0790         158 YLS----GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL------GVPRDLKKAFRWYKKAAEQGD--  222 (292)
T ss_pred             HHc----Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC------CCCcCHHHHHHHHHHHHHCCC--
Confidence            875    32 222221 2346778888888775  8999999998776531      124566999999999999877  


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       295 ~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ..++++++ +++..|.-.......    ..........+...+.++....+...
T Consensus       223 ~~a~~~~~-~~~~~g~g~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         223 GAACYNLG-LMYLNGEGVKKAAFL----TAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             HHHHHHHH-HHHhcCCCchhhhhc----ccccCCCHHHHHHHHHHHHHcCChhH
Confidence            89999999 777766311100000    00011125667777777766655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.011  Score=60.54  Aligned_cols=162  Identities=14%  Similarity=0.056  Sum_probs=119.5

Q ss_pred             hhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPE----DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      ...+.+.+.+.|+.+|.+=|.    .+..|...|....++.+              +..|.+.+-.|+..+|.+--. ..
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~--------------l~~ARkiLG~AIG~cPK~KlF-k~  442 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN--------------LTGARKILGNAIGKCPKDKLF-KG  442 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc--------------cHHHHHHHHHHhccCCchhHH-HH
Confidence            357888999999999999885    46788888888888888              999999999999999986321 11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                          |..       ++-.+..|+++.+.|++-|+..|.+-.+|...|.+-..+|+.          +.|...|+-|+...
T Consensus       443 ----YIe-------lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp  501 (677)
T KOG1915|consen  443 ----YIE-------LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQP  501 (677)
T ss_pred             ----HHH-------HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCc
Confidence                111       123344455555899999999999999999999999999999          88999998888765


Q ss_pred             CCCHHHHHHHHHHH--HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          292 FDFHRAIYNLGTVL--YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       292 P~~~~a~~~Lg~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                      .-+..-+.-.+.+-  ...|+                   +..+...|++.|...+...++.+
T Consensus       502 ~ldmpellwkaYIdFEi~~~E-------------------~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  502 ALDMPELLWKAYIDFEIEEGE-------------------FEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             ccccHHHHHHHhhhhhhhcch-------------------HHHHHHHHHHHHHhcccchHHHh
Confidence            43332222222222  22233                   67788888888887777665443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.29  E-value=0.015  Score=66.43  Aligned_cols=121  Identities=12%  Similarity=0.041  Sum_probs=64.4

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNW  212 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~~~l  212 (498)
                      .+.+++++|.++|+..++..-+....|..+|..++.+.+              -+.|...+.+||+.-|.  +.......
T Consensus      1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--------------~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--------------AEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred             HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--------------HHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence            334555555555555555555555555555555555555              55555555555555554  44444455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      +.+.++    .|+.+.+.       ..|+-.+.-+|.-.+.|+-+...-.+.|..          +-+...|++++.+
T Consensus      1607 AqLEFk----~GDaeRGR-------tlfEgll~ayPKRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1607 AQLEFK----YGDAERGR-------TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHhh----cCCchhhH-------HHHHHHHhhCccchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhc
Confidence            555555    55555555       345555555555555555555555555555          5555555555554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.27  E-value=0.0095  Score=65.26  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +++.+|.....+.++.+|+...+...-|.++.+    +|+.++|.       .+++..-...+++..++.-+-.+|..++
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence            349999999999999999999999999999999    99999999       5666666677889999999999999999


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      ++          ++|..+|++++...|+ .+..+.+=.+|.+.+.
T Consensus        92 ~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen   92 KL----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             hh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence            99          9999999999999999 8888888888888776

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.25  E-value=0.0061  Score=60.26  Aligned_cols=128  Identities=12%  Similarity=0.056  Sum_probs=102.5

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+..+.|...|.+|++..+-..++|...|.+-+..++             +.+.|...|+.+++..|.+...|......+
T Consensus        14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-------------d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen   14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-------------DPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4558899999999996666678999999999777554             277799999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      ..    .++.+.|.       ..|++++..-|...   ..|..+...-.+.|+.          +.....++++.++-|+
T Consensus        81 ~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   81 IK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTTT
T ss_pred             HH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhh
Confidence            88    99999998       68888887666544   6788888877888887          9999999999999888


Q ss_pred             CHHHH
Q 010864          294 FHRAI  298 (498)
Q Consensus       294 ~~~a~  298 (498)
                      +....
T Consensus       140 ~~~~~  144 (280)
T PF05843_consen  140 DNSLE  144 (280)
T ss_dssp             S-HHH
T ss_pred             hhHHH
Confidence            54433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.24  E-value=0.0083  Score=59.29  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATK  238 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~  238 (498)
                      +|..+.....+.+.              .+.|...|.+|++..+....+|...|.+-..    . ++.+.|.       +
T Consensus         3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~   57 (280)
T PF05843_consen    3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K   57 (280)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred             HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence            56677777777777              9999999999996666677888888888555    4 4555488       6


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhc
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRT  315 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~Lg~~~~~~g~~~~~~  315 (498)
                      .|+++++..|.+...|..+...+...|+.          +.|...|++++..-|...   .+|......-...|+     
T Consensus        58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-----  122 (280)
T PF05843_consen   58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-----  122 (280)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-----
Confidence            88888888899999999999999999999          999999999999866654   577777777777776     


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                                    +......++++.++-|++...
T Consensus       123 --------------l~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  123 --------------LESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             --------------HHHHHHHHHHHHHHTTTS-HH
T ss_pred             --------------HHHHHHHHHHHHHHhhhhhHH
Confidence                          677778888888888885533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.15  E-value=0.012  Score=58.43  Aligned_cols=144  Identities=17%  Similarity=0.080  Sum_probs=103.2

Q ss_pred             hhHHhhccHHHHHHHHHHH----HHhCCC--CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          132 EGRSRQRILTFAAKRYANA----IERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~a----l~~~P~--~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      ....++|.|++++.+--..    .+.+-.  .-+++.+++..+....+              +.+++.+..-.+.+-...
T Consensus        51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~--------------f~kt~~y~k~~l~lpgt~  116 (518)
T KOG1941|consen   51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE--------------FHKTISYCKTCLGLPGTR  116 (518)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHhcCCCCC
Confidence            3456677777776554333    333222  24688899999999988              999999888888873332


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       206 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                           ..++.-+|.++..    ++.++.+++       .|++|+..--+      ..+++..||..+.++.++       
T Consensus       117 ~~~~~gq~~l~~~~Ahlg----ls~fq~~Le-------sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~-------  178 (518)
T KOG1941|consen  117 AGQLGGQVSLSMGNAHLG----LSVFQKALE-------SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY-------  178 (518)
T ss_pred             cccccchhhhhHHHHhhh----HHHHHHHHH-------HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-------
Confidence                 2456667777777    777777775       55655544322      246788999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcch
Q 010864          275 TIVRTAISKFRAAIQLQFDF----------HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~----------~~a~~~Lg~~~~~~g~  310 (498)
                         ++|..+..+|.++-...          ..++|.++.+|..+|+
T Consensus       179 ---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~  221 (518)
T KOG1941|consen  179 ---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR  221 (518)
T ss_pred             ---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc
Confidence               99999999999984322          4578889999999886

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.12  E-value=0.015  Score=63.69  Aligned_cols=106  Identities=20%  Similarity=0.079  Sum_probs=96.7

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..+++.+|.....+.++..|+...+...-|.++.++|+              +++|..+++..-...+++-..+--+-.+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~   86 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV   86 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence            46789999999999999999999999999999999999              9999987777777788888899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      |.+    ++++++|.       ..|+++++.+|+ ...+..|=.+|.+.+.|
T Consensus        87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            999    99999999       799999999999 88888888999988887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.014  Score=63.46  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA----------TRLCPT----------LHDAFYNWAIAIS  217 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A----------l~l~p~----------~~~a~~~lg~~~~  217 (498)
                      -..|++.+.-+...++              .+.|+++|+++          |.-+|.          +...|..||.-+.
T Consensus       858 r~Tyy~yA~~Lear~D--------------i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE  923 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRD--------------IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE  923 (1416)
T ss_pred             hhhHHHHHHHHHhhcc--------------HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh
Confidence            3568899999988888              99999999875          222333          4567788899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHH--------------HhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKA--------------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~A--------------l~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .    .|+.+.|+..|..|..+|...              +.....+..+.+.||.-|...|++          .+|+.+
T Consensus       924 S----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~F  989 (1416)
T KOG3617|consen  924 S----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKF  989 (1416)
T ss_pred             c----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHH
Confidence            9    999999999998888777532              333456778888999999888888          999988


Q ss_pred             HHHHHH
Q 010864          284 FRAAIQ  289 (498)
Q Consensus       284 ~~~Al~  289 (498)
                      |.+|-.
T Consensus       990 fTrAqa  995 (1416)
T KOG3617|consen  990 FTRAQA  995 (1416)
T ss_pred             HHHHHH
Confidence            877654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.10  E-value=0.031  Score=56.66  Aligned_cols=170  Identities=15%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864          154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      .......|...+.+....|.              ++.|...+.++...++.    .+.+.+..+..+..    .|+..+|
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~A  203 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEA  203 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHH
Confidence            34556788899999999999              99999999999987632    45667777777777    9999999


Q ss_pred             HHHHHHHHH-HHHHHHhcC-----------------C--CCHHHHHHHHHHHHHhcCcchHHhhh------hhHHHHHHH
Q 010864          230 EELWKQATK-NYEKAVQLN-----------------W--NSPQALNNWGLALQELSAIVPAREKQ------TIVRTAISK  283 (498)
Q Consensus       230 ~~~~~~Al~-~~~~Al~l~-----------------P--~~~~a~~~lg~~l~~~g~~~~a~~~~------~~~~~Ai~~  283 (498)
                      +...+..+. .+.+-+...                 +  ....-....+.++..+|++   ....      +..++++..
T Consensus       204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w---~~~~~~~~~~~~~~~~~~~  280 (352)
T PF02259_consen  204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW---LDELYSKLSSESSDEILKY  280 (352)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH---HHhhccccccccHHHHHHH
Confidence            987776666 333221100                 0  0222233445555555555   3333      566999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       284 ~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      |+++++++|+...+|+.+|..+...-+..........  .....+....|+.+|-+++.+.+.
T Consensus       281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESS--QEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccc--hhHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999998877642211110000  013345678899999999999988

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.012  Score=57.76  Aligned_cols=142  Identities=13%  Similarity=-0.022  Sum_probs=107.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCC---HHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL---HDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~---~~a~  209 (498)
                      ....|++-+|...+++.|.-.|.+--++..--.+++..|+              ...-...+++.+-. +++.   ...+
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~  178 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVH  178 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHH
Confidence            3446888888899999999999998888888888888888              78888888888776 7765   4455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      -.++..+..    .|-|++|+       +.-++++++|+.+.-+...++.++...|++          +++.++..+.-.
T Consensus       179 GmyaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~ted  237 (491)
T KOG2610|consen  179 GMYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKTED  237 (491)
T ss_pred             HHHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhccc
Confidence            556666777    89999988       688999999999999999999999999999          888887766533


Q ss_pred             hcCCC----HHHHHHHHHHHHHcch
Q 010864          290 LQFDF----HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       290 l~P~~----~~a~~~Lg~~~~~~g~  310 (498)
                      .-...    ..-|...+.++..-++
T Consensus       238 ~Wr~s~mlasHNyWH~Al~~iE~ae  262 (491)
T KOG2610|consen  238 DWRQSWMLASHNYWHTALFHIEGAE  262 (491)
T ss_pred             chhhhhHHHhhhhHHHHHhhhcccc
Confidence            22211    1223445555555555

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.06  E-value=0.047  Score=62.63  Aligned_cols=157  Identities=13%  Similarity=0.035  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAIAISDR  219 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~~~a~~~lg~~~~~~  219 (498)
                      .+..+-|++.+.-+|+..-.|.+.-..+.++++              .++|.+..++||.- |+.-.+=-.|+-.+|.++
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsE--------------iekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSE--------------IEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh--------------hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence            345678999999999999999999999999999              99999999999974 665544444444444442


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                      --+-|.-+.-.       +.|++|.+..- -...+..|.-+|..-+++          ++|.++|+..++.--+...+|.
T Consensus      1507 En~yG~eesl~-------kVFeRAcqycd-~~~V~~~L~~iy~k~ek~----------~~A~ell~~m~KKF~q~~~vW~ 1568 (1710)
T KOG1070|consen 1507 ENAYGTEESLK-------KVFERACQYCD-AYTVHLKLLGIYEKSEKN----------DEADELLRLMLKKFGQTRKVWI 1568 (1710)
T ss_pred             HHhhCcHHHHH-------HHHHHHHHhcc-hHHHHHHHHHHHHHhhcc----------hhHHHHHHHHHHHhcchhhHHH
Confidence            22234333333       56666665432 346778888899999999          9999999999998888899999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       300 ~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .+|..++++.+                   -++|...+.+|++.-|...
T Consensus      1569 ~y~~fLl~~ne-------------------~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1569 MYADFLLRQNE-------------------AEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcccH-------------------HHHHHHHHHHHHhhcchhh
Confidence            99999999987                   5777888899999988844

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.011  Score=57.44  Aligned_cols=121  Identities=17%  Similarity=0.098  Sum_probs=91.4

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH--HHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--AFY  210 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~--a~~  210 (498)
                      .....|++.+|...|..++..+|++.++...++.+|...|+              .+.|...+..    .|....  .+.
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~--------------~e~A~~iL~~----lP~~~~~~~~~  204 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD--------------VEAAQAILAA----LPLQAQDKAAH  204 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC--------------hHHHHHHHHh----CcccchhhHHH
Confidence            34567999999999999999999999999999999999999              8888776654    343222  111


Q ss_pred             H-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          211 N-WA--IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       211 ~-lg--~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      . .+  ..+..    .....+..        .+++.+..||++.++-+.++..|...|+.          ++|.+.+-..
T Consensus       205 ~l~a~i~ll~q----aa~~~~~~--------~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~  262 (304)
T COG3118         205 GLQAQIELLEQ----AAATPEIQ--------DLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLAL  262 (304)
T ss_pred             HHHHHHHHHHH----HhcCCCHH--------HHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            1 11  11222    33333333        56778889999999999999999999999          9999998888


Q ss_pred             HHhcCC
Q 010864          288 IQLQFD  293 (498)
Q Consensus       288 l~l~P~  293 (498)
                      ++.+-.
T Consensus       263 l~~d~~  268 (304)
T COG3118         263 LRRDRG  268 (304)
T ss_pred             HHhccc
Confidence            877543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.055  Score=51.19  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=93.6

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      .+++.|...|.++...    +...++|++|..++.+|++-..++      +.++-..|.+..++..              
T Consensus        25 ad~dgaas~yekAAva----fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k--------------   86 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVA----FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK--------------   86 (308)
T ss_pred             CCchhhHHHHHHHHHH----HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------
Confidence            4556666777776655    556788999999999998654333      3455667777778887              


Q ss_pred             HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          188 LEEACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       188 ~~~A~~~~~~Al~l-----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      +.++...|++|..+     .|+-+..-...+--...    .-+.++|+++|++++..++.-=.. -.-.+.+...+.+|.
T Consensus        87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le----nv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen   87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLV  161 (308)
T ss_pred             hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhh
Confidence            99999999999887     45444333333333334    678899998777777655421100 012344556667788


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      +..++          .+|-..|.+-..
T Consensus       162 rl~kf----------~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  162 RLEKF----------TEAATAFLKEGV  178 (308)
T ss_pred             hhHHh----------hHHHHHHHHhhh
Confidence            88888          777777766443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.05  E-value=0.012  Score=48.79  Aligned_cols=103  Identities=12%  Similarity=0.014  Sum_probs=87.4

Q ss_pred             HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       164 lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      ++..++..|+              +-+|++..+..+..++++.   ..+..-|.++..++....+.+--...+..++.+|
T Consensus         2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~   67 (111)
T PF04781_consen    2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF   67 (111)
T ss_pred             hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence            4566778888              9999999999999998876   5677789999988888888888888889999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .++..+.|..+..++.+|.-+.-.-.|          ++++...+++|.+
T Consensus        68 s~a~~Lsp~~A~~L~~la~~l~s~~~Y----------kk~v~kak~~Lsv  107 (111)
T PF04781_consen   68 SRAVELSPDSAHSLFELASQLGSVKYY----------KKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhccChhHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHhcc
Confidence            999999999998888888776655566          8888888888765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.03  E-value=0.016  Score=51.02  Aligned_cols=82  Identities=23%  Similarity=0.142  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010864          188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  245 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~----------------------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~  245 (498)
                      .+.++..+++++.+-...                      ..+...++..+..    .|++++|+       ..+++++.
T Consensus        22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~   90 (146)
T PF03704_consen   22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA   90 (146)
T ss_dssp             HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence            778888888888772211                      1344445555555    88888888       79999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       246 l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .+|.+..++..+-.+|...|+.          .+|+..|++..+.
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRRR  125 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHH
Confidence            9999999999999999999999          9999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.00  E-value=0.04  Score=58.60  Aligned_cols=140  Identities=15%  Similarity=0.138  Sum_probs=104.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---
Q 010864          134 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---  206 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---  206 (498)
                      +...|+++.|...|++++..+=    +.+..|.++|..-....+              ++.|.+..++|+.+-.+..   
T Consensus       397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~vP~~~~~~~  462 (835)
T KOG2047|consen  397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHVPTNPELEY  462 (835)
T ss_pred             HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcCCCchhhhh
Confidence            5568999999999999998763    236788898888888777              9999999999987621111   


Q ss_pred             -----HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864          207 -----DA---FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  278 (498)
Q Consensus       207 -----~a---~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~  278 (498)
                           .+   .++--.+++.    --+++|+..-|+...+.|++.+.+.--.++.-.|.|..+.+..-+          +
T Consensus       463 yd~~~pvQ~rlhrSlkiWs~----y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------e  528 (835)
T KOG2047|consen  463 YDNSEPVQARLHRSLKIWSM----YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------E  528 (835)
T ss_pred             hcCCCcHHHHHHHhHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------H
Confidence                 11   1111222333    556777777788888999999999999999999999999988888          8


Q ss_pred             HHHHHHHHHHHh--cCCCHHHHHHH
Q 010864          279 TAISKFRAAIQL--QFDFHRAIYNL  301 (498)
Q Consensus       279 ~Ai~~~~~Al~l--~P~~~~a~~~L  301 (498)
                      +|.+.|++.|.+  .|+-.++|+..
T Consensus       529 esFk~YErgI~LFk~p~v~diW~tY  553 (835)
T KOG2047|consen  529 ESFKAYERGISLFKWPNVYDIWNTY  553 (835)
T ss_pred             HHHHHHHcCCccCCCccHHHHHHHH
Confidence            888888887776  35555666543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.98  E-value=0.0014  Score=42.23  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      .+|+.+|.+|..+|++          ++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence            5799999999999999          99999999999999964

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.024  Score=61.61  Aligned_cols=103  Identities=17%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcCcchHHh
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQA----TKNYEKAVQLNWN----------SPQALNNWGLALQELSAIVPARE  272 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A----l~~~~~Al~l~P~----------~~~a~~~lg~~l~~~g~~~~a~~  272 (498)
                      ..||+.+.-+..    .++.+.|+++|+++    ...++ .|.-+|.          +...|..+|.-+...|+.     
T Consensus       859 ~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~r-mL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem-----  928 (1416)
T KOG3617|consen  859 NTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFR-MLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM-----  928 (1416)
T ss_pred             hhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHH-HHHhChHHHHHHHHhccchHHHHHHHHHHhcccch-----
Confidence            578888888888    89999999888773    22222 2333333          445555666666666666     


Q ss_pred             hhhhHHHHHHHHHHHHHh---------------------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          273 KQTIVRTAISKFRAAIQL---------------------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       273 ~~~~~~~Ai~~~~~Al~l---------------------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                           +.|+.+|..|-..                     ...+-.+.|.||.-|.+.|+                   +.
T Consensus       929 -----daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~-------------------v~  984 (1416)
T KOG3617|consen  929 -----DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD-------------------VV  984 (1416)
T ss_pred             -----HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH-------------------HH
Confidence                 8888888877542                     35567789999999999998                   66


Q ss_pred             HHHHHHHHHHhc
Q 010864          332 QSAIYIAAAHAL  343 (498)
Q Consensus       332 ~A~~~~~~Al~l  343 (498)
                      +|+.+|-+|..+
T Consensus       985 ~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  985 KAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.91  E-value=0.0029  Score=61.38  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             cHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHH
Q 010864          115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK  194 (498)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~  194 (498)
                      ...+|+..++.++..     .+.|+.++|..+|+.|++++|++++++...|....+.++              .-+|-.+
T Consensus       112 ~~kEA~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~  172 (472)
T KOG3824|consen  112 KVKEAILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQC  172 (472)
T ss_pred             hhHHHHHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhh
Confidence            345566666655544     668999999999999999999999999999999998888              9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH
Q 010864          195 YDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       195 ~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      |-+||.++|.+.+++.|....
T Consensus       173 Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  173 YVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hheeeeeCCCchHHHhhhhcc
Confidence            999999999999998886543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.89  E-value=0.0018  Score=41.61  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      +.+|+.+|.+|..+|+              +++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence            3689999999999999              999999999999999853

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.85  E-value=0.00045  Score=67.91  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +++|++.|..++.++|..+..|-..+.++.+    +++...|+       +.|..|++++|+.+.-+-..|.+...+|.+
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence            9999999999999999999999999999999    99999999       799999999999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                                .+|...++.+.+++-+
T Consensus       199 ----------e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  199 ----------EEAAHDLALACKLDYD  214 (377)
T ss_pred             ----------HHHHHHHHHHHhcccc
Confidence                      9999999999998655

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.78  E-value=0.055  Score=55.12  Aligned_cols=140  Identities=13%  Similarity=-0.007  Sum_probs=93.3

Q ss_pred             hccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       137 ~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      .|+.++|+..+..+ ....+.+++.+..+|.+|..+-.     .+.......+++|+..|.++.+++|+... =.|++.+
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-----~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtL  268 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-----ESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATL  268 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHH
Confidence            79999999999994 45667899999999999987643     11123444599999999999999976543 3566666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hc----CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAV-QL----NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l----~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      +.-    .|...+.....++-...+...+ +.    .-.+.-.+-.+..+..-.|++          ++|+.++++++++
T Consensus       269 L~~----~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~----------~ka~~a~e~~~~l  334 (374)
T PF13281_consen  269 LML----AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDY----------EKAIQAAEKAFKL  334 (374)
T ss_pred             HHH----cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhc
Confidence            666    6654443322222211122111 11    112333444556666677888          9999999999999


Q ss_pred             cCCCHH
Q 010864          291 QFDFHR  296 (498)
Q Consensus       291 ~P~~~~  296 (498)
                      .|....
T Consensus       335 ~~~~W~  340 (374)
T PF13281_consen  335 KPPAWE  340 (374)
T ss_pred             CCcchh
Confidence            876544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.78  E-value=0.091  Score=55.97  Aligned_cols=176  Identities=14%  Similarity=0.133  Sum_probs=125.9

Q ss_pred             hccHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CH
Q 010864          137 QRILTFAAKRYANAIE-RNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LH  206 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~-~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~  206 (498)
                      .|+..+-+..|.+|+. .+|.-     ...|..+|..|...|+              ++.|...|++|++.+=.    .+
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--------------l~~aRvifeka~~V~y~~v~dLa  425 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--------------LDDARVIFEKATKVPYKTVEDLA  425 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--------------HHHHHHHHHHhhcCCccchHHHH
Confidence            5778888999999875 56653     4679999999999999              99999999999998543    36


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC------------C------CCHHHHHHHHHHHHHhcCcc
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------------W------NSPQALNNWGLALQELSAIV  268 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~------------P------~~~~a~~~lg~~l~~~g~~~  268 (498)
                      .+|.++|..-.+    ..+++.|+.       ..++|+..-            |      ++...|..++......|-+ 
T Consensus       426 ~vw~~waemElr----h~~~~~Al~-------lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf-  493 (835)
T KOG2047|consen  426 EVWCAWAEMELR----HENFEAALK-------LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF-  493 (835)
T ss_pred             HHHHHHHHHHHh----hhhHHHHHH-------HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH-
Confidence            789999988888    888888885       444444221            1      1344566666666667777 


Q ss_pred             hHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch-----hHHhccCCCCCCCCCh---------------hH
Q 010864          269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE-----DTLRTGGTVNPREVSP---------------NE  328 (498)
Q Consensus       269 ~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~-----~~~~~~~~~~~~~~~~---------------~~  328 (498)
                               +.-...|++.|.+.--.|.+..|.|..+....-     +....+..+=.-....               ..
T Consensus       494 ---------estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~  564 (835)
T KOG2047|consen  494 ---------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT  564 (835)
T ss_pred             ---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence                     999999999999999999999999988765542     1222222111000000               01


Q ss_pred             HHHHHHHHHHHHHhcCCCH
Q 010864          329 LYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       329 ~~~~A~~~~~~Al~l~p~~  347 (498)
                      ..+.|...|++|++.-|..
T Consensus       565 klEraRdLFEqaL~~Cpp~  583 (835)
T KOG2047|consen  565 KLERARDLFEQALDGCPPE  583 (835)
T ss_pred             CHHHHHHHHHHHHhcCCHH
Confidence            2588999999999988843

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=96.77  E-value=0.0014  Score=53.95  Aligned_cols=83  Identities=22%  Similarity=0.259  Sum_probs=61.9

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC--CCCCCeeeEeecCCce
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIHGPV  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~  460 (498)
                      -..|+++||+|....|........             .  ......|+|.++.+|.+|.+-.  ....++|.+.|..-..
T Consensus        16 ~K~WkrRwF~L~~~~L~y~K~~~~-------------~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~   80 (101)
T cd01264          16 IKRWKTRYFTLSGAQLLFQKGKSK-------------D--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTY   80 (101)
T ss_pred             eecceeEEEEEeCCEEEEEeccCc-------------c--CCCCceEEcccceEEeeccccccccccCcEEEEEcCCceE
Confidence            358999999999776643221101             0  1113579999999999998743  2456899999888777


Q ss_pred             eeeecChhhhhhHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ||.|+|....+.|..+|..+
T Consensus        81 ~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          81 ILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             EEEeCCHHHHHHHHHHHHhh
Confidence            99999999999999999754

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=96.77  E-value=0.0016  Score=53.65  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             chhhhhhhhccchh--hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-C----CCCeeeEee
Q 010864          383 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-P----PGAGLCIET  455 (498)
Q Consensus       383 ~~~w~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p----~~~~~~~~~  455 (498)
                      ...|+++||+|...  .|..+.....                ......|+|..+.++..+.+... |    +.+.|.+.|
T Consensus        12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t   75 (101)
T cd01235          12 LKGWKPRWFVLDPDKHQLRYYDDFED----------------TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT   75 (101)
T ss_pred             CCCccceEEEEECCCCEEEEecCCCC----------------CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence            45899999999743  4444332211                12345688888777775433211 1    345577776


Q ss_pred             cCCceeeeecChhhhhhHHHHHHHH
Q 010864          456 IHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..-..||.|+|.++++.|++||+-+
T Consensus        76 ~~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          76 SKRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhh
Confidence            5555688899999999999999864

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.75  E-value=0.024  Score=53.61  Aligned_cols=103  Identities=18%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHH
Q 010864          187 LLEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQA  253 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l----~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------~~~a  253 (498)
                      .+++|++.|.-|+-.    ..+   -+..+..++.+|..    +|+-+.....+++|+..|+++++....      ....
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            388899988888764    222   35677888888888    999888889999999999999976632      3678


Q ss_pred             HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 010864          254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGT  303 (498)
Q Consensus       254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~  303 (498)
                      .+.+|.+..++|++          ++|+.+|.+++...-.. ...+.+++.
T Consensus       168 ~YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  168 LYLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            89999999999999          99999999999864332 234444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.73  E-value=0.027  Score=59.77  Aligned_cols=125  Identities=16%  Similarity=0.097  Sum_probs=98.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNW  212 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~a~~~l  212 (498)
                      ....+.|.+.+....+..|+..-.++..|.++...|+              .++|++.|++++.....    ..-+++.+
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El  311 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--------------LEEAIESFERAIESQSEWKQLHHLCYFEL  311 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence            5677889999999999999999999999999999999              99999999999864333    34578999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      |.++.-    +++|++|.       .+|.+.++.+. ..+-..+..|.++..+|+.   .......++|...|+++-.
T Consensus       312 ~w~~~~----~~~w~~A~-------~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  312 AWCHMF----QHDWEEAA-------EYFLRLLKESKWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHH----HchHHHHH-------HHHHHHHhccccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHHH
Confidence            999999    99999998       68888887653 4556677788889999886   2222233555556655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=96.72  E-value=0.0018  Score=53.46  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=58.6

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  463 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  463 (498)
                      ..|+++||+|....-......+-....-...     .....+...|+|.++.++....|..  .+++|.|.|.....||+
T Consensus        12 K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~-----~~~~~p~~vI~L~~c~~v~~~~d~k--~~~~f~i~t~dr~f~l~   84 (101)
T cd01257          12 KSMHKRFFVLRAESSGGPARLEYYENEKKFL-----QKGSAPKRVIPLESCFNINKRADAK--HRHLIALYTRDEYFAVA   84 (101)
T ss_pred             cCcEeEEEEEecCCCCCCceEEEECChhhcc-----ccCCCceEEEEccceEEEeeccccc--cCeEEEEEeCCceEEEE
Confidence            6899999999765311101111111000000     0012356688999999887766632  46999999988878999


Q ss_pred             ecChhhhhhHHHHHH
Q 010864          464 ADSWEALDGWLDAIR  478 (498)
Q Consensus       464 ~~~~~~~~~~~~a~~  478 (498)
                      |+|..+.+.|+++|.
T Consensus        85 aese~E~~~Wi~~i~   99 (101)
T cd01257          85 AENEAEQDSWYQALL   99 (101)
T ss_pred             eCCHHHHHHHHHHHh
Confidence            999999999999995

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=96.70  E-value=0.002  Score=54.00  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=53.6

Q ss_pred             chhhhhhhhccchhhh-------hhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC---CCCCCCeee
Q 010864          383 HSDWKRSQFVLNHEGL-------QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL---TLPPGAGLC  452 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~  452 (498)
                      ...|+++||+|....+       ..+-...                .......|+|..+..++.....   .-+..+.|.
T Consensus        16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~----------------~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~   79 (108)
T cd01266          16 RTKWVRRYFVLHCGDRERNLFALEYYKTSR----------------KFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFD   79 (108)
T ss_pred             ccCcEEEEEEEeccccCCCcceEEEECCCC----------------CCccceEEECCccEEEcccccccccCcccceEEE
Confidence            3589999999987654       2221111                1234567777776665432111   112356788


Q ss_pred             EeecCCceeeeecChhhhhhHHHHHHHH
Q 010864          453 IETIHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      +.|..-..||.|+|.++++.|+++|+.+
T Consensus        80 i~t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          80 IETIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence            8876656699999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.62  E-value=0.14  Score=55.77  Aligned_cols=163  Identities=18%  Similarity=0.107  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHhhhcc------------hhh-HHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcCCC
Q 010864          116 NNAAMELINSVTGVD------------EEG-RSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSL  177 (498)
Q Consensus       116 ~~~A~~~~~~~~~~~------------~~~-~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~~  177 (498)
                      ...+..++..+....            ..| +....+++.|+.+|+.+...     .-.++.+.+.+|.+|.....    
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~----  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG----  303 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC----
Confidence            445666665555444            112 33467899999999999771     12266789999999988542    


Q ss_pred             CCCCCchhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          178 DSTSPSKDA-LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       178 ~~~~~~~~~-~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                            ... +++.|...|.++-.+.  ++.+.+++|.++..    ..    ..+++++|..+|..|...  .+..+.++
T Consensus       304 ------~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  304 ------VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             ------CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHH
Confidence                  000 4899999999997764  56788999999986    33    234455666888887754  68899999


Q ss_pred             HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      ++.+|..-.-      -..+...|..+|+++.+..  .+.+.+.++..+..-
T Consensus       366 la~~y~~G~g------v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g  409 (552)
T KOG1550|consen  366 LALCYELGLG------VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYG  409 (552)
T ss_pred             HHHHHHhCCC------cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHc
Confidence            9998875422      2456699999999999987  566677777665443

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=96.59  E-value=0.0016  Score=53.81  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=60.1

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-CC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-TL  445 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  445 (498)
                      ..|||.-...     ....|.++||+|....|........                ......|+|.++ +++...+. ..
T Consensus         4 k~G~L~Kkg~-----~~k~WkkRwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~-~v~~~~~~~~~   61 (100)
T cd01233           4 KKGYLNFPEE-----TNSGWTRRFVVVRRPYLHIYRSDKD----------------PVERGVINLSTA-RVEHSEDQAAM   61 (100)
T ss_pred             eeEEEEeeCC-----CCCCcEEEEEEEECCEEEEEccCCC----------------ccEeeEEEeccc-EEEEccchhhh
Confidence            3566665321     2358999999999876665433221                122445666643 44443332 12


Q ss_pred             C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          446 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       446 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      . ....|.|.|..-..||.|+|.+++.+|.+||.-+|
T Consensus        62 ~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          62 VKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             cCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            1 34578888776667999999999999999998776

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.58  E-value=0.39  Score=48.41  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=109.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864          145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  224 (498)
Q Consensus       145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g  224 (498)
                      .-|++.+..+|.+.++|..+....-..-......  ........+.-+..|++||+.+|++...+..+=.+..+    ..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~~   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----VW   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hC
Confidence            4678899999999999999987766554311111  23445567888999999999999998888776666666    66


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchHHhhhhhHHHHHHHHHHHHHhcC-----------
Q 010864          225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQF-----------  292 (498)
Q Consensus       225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P-----------  292 (498)
                      ..++..       +.+++++..+|++...|..+=...+. .+.+        .+......|.++|+.-.           
T Consensus        80 ~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~L~~~~~~~~~~~~  144 (321)
T PF08424_consen   80 DSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRALSRRRSGRMTSHP  144 (321)
T ss_pred             CHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            666666       67888888999999888765544433 3443        23677777877776411           


Q ss_pred             CC-------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          293 DF-------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       293 ~~-------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      +-       ..++.++...+...|-                   .+.|...++..++++
T Consensus       145 ~~~~~e~~~l~v~~r~~~fl~~aG~-------------------~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  145 DLPELEEFMLYVFLRLCRFLRQAGY-------------------TERAVALWQALLEFN  184 (321)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHCCc-------------------hHHHHHHHHHHHHHH
Confidence            11       1233444444555554                   677888888888775

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.2  Score=47.17  Aligned_cols=150  Identities=13%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-----C-CHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-----T-LHDAFY  210 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-----~-~~~a~~  210 (498)
                      .+++++|.++|.++              |+.|.....              +..|=..|.++-.++-     + -+..|.
T Consensus        27 ~~k~eeAadl~~~A--------------an~yklaK~--------------w~~AG~aflkaA~~h~k~~skhDaat~Yv   78 (288)
T KOG1586|consen   27 SNKYEEAAELYERA--------------ANMYKLAKN--------------WSAAGDAFLKAADLHLKAGSKHDAATTYV   78 (288)
T ss_pred             CcchHHHHHHHHHH--------------HHHHHHHHh--------------HHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            35888999888886              344555555              6666666666554421     1 123344


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .-+.+|.     .++..+|+..++.|+..|...-+.. .-+.-+..+|.+|...         +.++++||.+|++|-+.
T Consensus        79 eA~~cyk-----k~~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyEsd---------l~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   79 EAANCYK-----KVDPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYESD---------LQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHhh-----ccChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHhhh---------HHHHHHHHHHHHHHHHH
Confidence            4444443     5678888865555555444322110 0112233444444322         35559999999999876


Q ss_pred             cCCC-HHHHHH-----HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          291 QFDF-HRAIYN-----LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       291 ~P~~-~~a~~~-----Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      -... ..+.-|     .+..-..+++                   |.+|+..|++.....-++.
T Consensus       144 yk~ees~ssANKC~lKvA~yaa~leq-------------------Y~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  144 YKGEESVSSANKCLLKVAQYAAQLEQ-------------------YSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HcchhhhhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhccch
Confidence            4332 222222     2222223333                   7788888887766665555

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.54  E-value=0.09  Score=53.22  Aligned_cols=143  Identities=18%  Similarity=0.175  Sum_probs=108.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-C-C---
Q 010864          134 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-T---  204 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p-~---  204 (498)
                      ..+.|.++.|...+.++...++    ..+.+.+..+.+++..|+              ..+|+..++..+... . .   
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcccc
Confidence            4567999999999999988652    257888899999999999              999999999888821 1 1   


Q ss_pred             ----------------------CHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          205 ----------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       205 ----------------------~~~a~~~lg~~~~~~~~~~g~~~eA~------~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                                            ...-....+.++..    .|++-...      ..++.++..|+++++++|+...+|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence                                  11122344555555    66666666      66777789999999999999999999


Q ss_pred             HHHHHHHhcCcchH-------HhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          257 WGLALQELSAIVPA-------REKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       257 lg~~l~~~g~~~~a-------~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      +|..+.+.-.....       .........|+..|-+++.+.+++
T Consensus       298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence            99998877554322       134556788999999999998883

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.45  E-value=0.48  Score=46.77  Aligned_cols=177  Identities=21%  Similarity=0.119  Sum_probs=122.6

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...+.+..|+..|.++-..  .++.+...+|..|..-..          ...+..+|...|+.+  .+..++.+.++||.
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g----------v~~~~~~A~~~~~~~--a~~g~~~a~~~lg~  117 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG----------VSRDKTKAADWYRCA--AADGLAEALFNLGL  117 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC----------ccccHHHHHHHHHHH--hhcccHHHHHhHHH
Confidence            4467888888888888762  344788888888876432          223489999999944  56778899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      +|..     |+.  ....+.+|+..|++|.+..-.. ..+.+++|.+|..-. .  ......+...|+..|.++-...  
T Consensus       118 ~~~~-----G~g--v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~--~~~~~~~~~~A~~~~~~aa~~~--  185 (292)
T COG0790         118 MYAN-----GRG--VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q--ALAVAYDDKKALYLYRKAAELG--  185 (292)
T ss_pred             HHhc-----CCC--cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h--hhcccHHHHhHHHHHHHHHHhc--
Confidence            9975     321  1224556668999998775333 345899999888652 1  0111223368999999998776  


Q ss_pred             CHHHHHHHHHHHHHc-chhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          294 FHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  353 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~  353 (498)
                      ++.+.++||.+|..- |       .         ...+.+|..+|.+|-+.......+..+
T Consensus       186 ~~~a~~~lg~~y~~G~G-------v---------~~d~~~A~~wy~~Aa~~g~~~a~~~~~  230 (292)
T COG0790         186 NPDAQLLLGRMYEKGLG-------V---------PRDLKKAFRWYKKAAEQGDGAACYNLG  230 (292)
T ss_pred             CHHHHHHHHHHHHcCCC-------C---------CcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            789999999777553 2       1         112789999999999988733344444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.44  E-value=0.091  Score=57.09  Aligned_cols=164  Identities=20%  Similarity=0.118  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Q 010864          139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LCPTLHDAFYNWA  213 (498)
Q Consensus       139 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-----l~p~~~~a~~~lg  213 (498)
                      +...|...|+.+...  .+..+.+.+|.+|..-+.         ...++.+.|+.+|+.+..     ..-.++.+.+.+|
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg  295 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG  295 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence            467788888888766  688999999999987644         334569999999999977     1222667899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+|.+    ..-...-  +++.|+.+|.++-.+  +++.+.+++|.++..-.       +..|...|..+|..|..  -.
T Consensus       296 ~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~--~G  358 (552)
T KOG1550|consen  296 RLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAK--AG  358 (552)
T ss_pred             HHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHH--cC
Confidence            99987    4311111  455566899888876  46888999999988665       22345899999999875  46


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      +..+.++++.+|..-..      .         ......|..+|.++-+...
T Consensus       359 ~~~A~~~la~~y~~G~g------v---------~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  359 HILAIYRLALCYELGLG------V---------ERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             ChHHHHHHHHHHHhCCC------c---------CCCHHHHHHHHHHHHHccC
Confidence            78899999998764311      0         1115778888888888873

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.46  Score=48.39  Aligned_cols=184  Identities=17%  Similarity=0.182  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA  220 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~  220 (498)
                      .++++.=.+.+..+|+...+|+.+-.++...-...  +....++...+++-+.....+|+.+|+...+|+.+..++.+  
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~--~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~--  121 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA--QLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK--  121 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh--cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--
Confidence            56788888889999999999987776665543300  22233445578888999999999999999999999999988  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                        .+..     .|.+-+..++++++.||.|-.+|...-.+.......      .+...+=+++..++|.-++.+-.+|.+
T Consensus       122 --~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWhy  188 (421)
T KOG0529|consen  122 --NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWHY  188 (421)
T ss_pred             --CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHHH
Confidence              6654     566677899999999999999999888877655432      112266778999999999999999999


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ...++-.+-...      ..+. .-+.+.+..-.++...|.--+|++.
T Consensus       189 Rs~lL~~l~~~~------~~g~-~~~~~~l~sEle~v~saiFTdp~Dq  229 (421)
T KOG0529|consen  189 RSLLLSTLHPKE------ADGN-FMPKELLQSELEMVHSAIFTDPEDQ  229 (421)
T ss_pred             HHHHHHHhcccc------ccCc-cCCHHHHHHHHHHHHHHHhcCcccc
Confidence            988877554310      0011 2345567777888888999999988

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.42  E-value=0.18  Score=53.68  Aligned_cols=152  Identities=14%  Similarity=0.009  Sum_probs=105.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--cCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD--NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      .|+-+.++..+.++.+ ..+-...+..+..+.+...-  ....+    ....+.+.|.+.++...+..|+..-..+..|.
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~----~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR  275 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGID----GEDVPLEEAEELLEEMLKRYPNSALFLFFEGR  275 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCc----ccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            4888999999999877 33333333333222222111  00000    02345899999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ++..    .|+.++|++.|++|+..-..   ...-..-.++.+|.++.-+++|          ++|..+|.+.++.+.-.
T Consensus       276 ~~~~----~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WS  338 (468)
T PF10300_consen  276 LERL----KGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWS  338 (468)
T ss_pred             HHHH----hcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccH
Confidence            9999    99999999655554421111   1111356789999999999999          99999999999865443


Q ss_pred             -HHHHHHHHHHHHHcch
Q 010864          295 -HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       295 -~~a~~~Lg~~~~~~g~  310 (498)
                       +.-.|..|.|+..+|+
T Consensus       339 ka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence             3344667888888887

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.017  Score=59.48  Aligned_cols=125  Identities=14%  Similarity=0.045  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGL  259 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--------~~~a~~~lg~  259 (498)
                      +.-+..-.+-++.+.-+.+.+.+..+..+.-    .|++..|.+++      ..--+...|.        .-..|||+|.
T Consensus       222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL------~~sni~~~~g~~~T~q~~~cif~NNlGc  291 (696)
T KOG2471|consen  222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLL------LVSNIHKEAGGTITPQLSSCIFNNNLGC  291 (696)
T ss_pred             HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHH------HhcccccccCccccchhhhheeecCcce
Confidence            6666666666666677788888888888877    99999999522      1112233333        2345899999


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHH-----h----c---------CCCHHHHHHHHHHHHHcchhHHhccCCCCC
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQ-----L----Q---------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNP  321 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-----l----~---------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~  321 (498)
                      +++++|.|          ..++.+|.+|++     +    .         -..-++.||.|..|...|+           
T Consensus       292 Ih~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr-----------  350 (696)
T KOG2471|consen  292 IHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR-----------  350 (696)
T ss_pred             EeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC-----------
Confidence            99999999          999999999996     1    1         2346789999999999999           


Q ss_pred             CCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          322 REVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       322 ~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                              -..|.+||.++...--.+++.+
T Consensus       351 --------Pl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  351 --------PLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             --------cHHHHHHHHHHHHHHhcCcHHH
Confidence                    6788999999888777776433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.40  E-value=1.1  Score=45.48  Aligned_cols=92  Identities=20%  Similarity=0.006  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--------------------------------  235 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~--------------------------------  235 (498)
                      .+.|+.+-+++-...|...-++..+=...+.    .|+++.|+++.++                                
T Consensus       170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            5555555555555555554444443333444    5555555555422                                


Q ss_pred             --HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          236 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       236 --Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                        |...-.+++++.|+...+-..-+.+|.+.|+.          .++-..++.+.+..|.
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~ePH  295 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCCC
Confidence              44677788999999999999999999999998          6666666666666554

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=96.37  E-value=0.0042  Score=51.55  Aligned_cols=82  Identities=12%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccc---ccccccCCC-CC-CCCeeeEeecCC
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV---SVSACADLT-LP-PGAGLCIETIHG  458 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~p-~~~~~~~~~~~~  458 (498)
                      ..|+++||+|....|..+......                .+...|+|..+.   +|......+ -. ..++|.|.|..-
T Consensus        14 k~wkkRwFvL~~~~L~Yyk~~~d~----------------~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~R   77 (103)
T cd01251          14 EGFKKRWFTLDDRRLMYFKDPLDA----------------FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPER   77 (103)
T ss_pred             CCceeEEEEEeCCEEEEECCCCCc----------------CcCcEEEeeccccceeEeccCCccccccccceEEEEeCCe
Confidence            469999999997777765432221                122345555332   222111111 11 234899997644


Q ss_pred             ceeeeecChhhhhhHHHHHHHHH
Q 010864          459 PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       459 ~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ..||.|+|.++++.|+.||.-|.
T Consensus        78 ty~l~a~s~~e~~~Wi~ai~~v~  100 (103)
T cd01251          78 KFLFACETEQDRREWIAAFQNVL  100 (103)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999875

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.32  E-value=0.2  Score=45.99  Aligned_cols=116  Identities=12%  Similarity=0.012  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 010864          142 FAAKRYANAIERNPEDYD---ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIA  215 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~  215 (498)
                      +.+...++....++....   +-..++..+.+.++              +++|+..++.++..-.+.   .-+-.+|+.+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~A~aqL~~~l~~t~De~lk~l~~lRLArv  135 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDKAEAQLKQALAQTKDENLKALAALRLARV  135 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence            455555666666655543   34677888899999              999999999998764442   3456788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ...    +|++++|+.       .+....  +++ ....-...|.++...|+-          ++|+..|++|++..++.
T Consensus       136 q~q----~~k~D~AL~-------~L~t~~--~~~w~~~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         136 QLQ----QKKADAALK-------TLDTIK--EESWAAIVAELRGDILLAKGDK----------QEARAAYEKALESDASP  192 (207)
T ss_pred             HHH----hhhHHHHHH-------HHhccc--cccHHHHHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCCh
Confidence            999    999999993       333221  111 233456789999999999          99999999999997553

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.31  E-value=0.012  Score=61.65  Aligned_cols=100  Identities=23%  Similarity=0.201  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          187 LLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~-a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +...|++++..|+-+.|.... ...+|+.++.+    .|-.-.|-       ..+.+++.++-..+-.++.+|.++..+.
T Consensus       622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALK  690 (886)
T ss_pred             CcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHh
Confidence            399999999999999997544 57899999999    88777888       6888888888888899999999999999


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                      +.          +.|+++|++|+.++|+++...+.|-.+-..
T Consensus       691 ~i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~  722 (886)
T KOG4507|consen  691 NI----------SGALEAFRQALKLTTKCPECENSLKLIRCM  722 (886)
T ss_pred             hh----------HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            99          999999999999999999998887766553

>PRK10941 hypothetical protein; Provisional

Probab=96.26  E-value=0.026  Score=55.19  Aligned_cols=75  Identities=12%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             HHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864          123 INSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  202 (498)
Q Consensus       123 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  202 (498)
                      +.+....-...+.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.              +..|...++..++.+
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~~~  245 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHhC
Confidence            333333333447889999999999999999999999999999999999999              999999999999999


Q ss_pred             CCCHHHHHH
Q 010864          203 PTLHDAFYN  211 (498)
Q Consensus       203 p~~~~a~~~  211 (498)
                      |+++.+-.-
T Consensus       246 P~dp~a~~i  254 (269)
T PRK10941        246 PEDPISEMI  254 (269)
T ss_pred             CCchhHHHH
Confidence            998876544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.23  E-value=0.0079  Score=39.45  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       253 a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      +|.+||.+|..+|++          ++|+.+|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence            588999999999999          99999999977653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.07  Score=52.66  Aligned_cols=116  Identities=18%  Similarity=-0.000  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                      ...-+.+++..|+              +.+|....++.|.-.|.+.-++..--.+++.    +|+...-.       ..+
T Consensus       106 ~h~~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai  160 (491)
T KOG2610|consen  106 RHAKAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAI  160 (491)
T ss_pred             hhhhHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHH
Confidence            3344566677787              9999999999999999998887777777777    88887777       577


Q ss_pred             HHHHhc-CCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          241 EKAVQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       241 ~~Al~l-~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ++.+-. +|+.   ....-.++..+.+.|-|          ++|.+.-++++++++.+.-+...++.++...|+.
T Consensus       161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~  225 (491)
T KOG2610|consen  161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRH  225 (491)
T ss_pred             HHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence            887754 6554   66777788889999999          9999999999999999999999999999888864

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.081  Score=55.89  Aligned_cols=136  Identities=20%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  218 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~--lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~  218 (498)
                      .-++..+...+.+++.++..+..  +...+...++              ...+......++..+|++..++.|||.++..
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~  113 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL  113 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH
Confidence            33667777777888998887543  4777777787              8889999999999999999999999999988


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864          219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI  298 (498)
Q Consensus       219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~  298 (498)
                          .|....+..      ...+.+....|++.+....+-.+|. ++++   ....++..++.....+++.+.|+++.+.
T Consensus       114 ----~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         114 ----DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKLLGRTAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             ----hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence                777777664      4555688899999999988855555 5554   3334444888899999999999997776


Q ss_pred             HHHHHH
Q 010864          299 YNLGTV  304 (498)
Q Consensus       299 ~~Lg~~  304 (498)
                      ..+...
T Consensus       180 ~~~~~~  185 (620)
T COG3914         180 GALMTA  185 (620)
T ss_pred             hHHHHH
Confidence            666555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.16  E-value=0.017  Score=59.86  Aligned_cols=90  Identities=23%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ...|+..|.+++...|.....+.|.+.++++++++ |+.-.|+       ..+..|+++||....+|+.|+.++.+++++
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-~d~~~Al-------rDch~Alrln~s~~kah~~la~aL~el~r~  461 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-GDSYLAL-------RDCHVALRLNPSIQKAHFRLARALNELTRY  461 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-ccHHHHH-------HhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence            88899999999999999999999999999884443 3555555       789999999999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                                .+|+.+...+....|.+.
T Consensus       462 ----------~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  462 ----------LEALSCHWALQMSFPTDV  479 (758)
T ss_pred             ----------HHhhhhHHHHhhcCchhh
Confidence                      999999888877777443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.12  E-value=0.01  Score=38.89  Aligned_cols=29  Identities=31%  Similarity=0.467  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  202 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  202 (498)
                      +|.+||.+|..+|+              +++|+++|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT---------------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhc
Confidence            58899999999999              999999999977653

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=96.11  E-value=0.0044  Score=50.57  Aligned_cols=78  Identities=13%  Similarity=0.278  Sum_probs=52.3

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecC-Ccee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVF  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~  461 (498)
                      ...|.++||+|....|..+......                .....|+|... .+..+.+..  ..+.|.|.|.. .+.|
T Consensus        17 ~k~WkkrwfvL~~~~L~yyk~~~~~----------------~~~~~I~L~~~-~v~~~~~~~--k~~~F~I~~~~~~~~~   77 (96)
T cd01260          17 GQKWARRWFVLKGTTLYWYRSKQDE----------------KAEGLIFLSGF-TIESAKEVK--KKYAFKVCHPVYKSFY   77 (96)
T ss_pred             ccCceeEEEEEECCEEEEECCCCCC----------------ccceEEEccCC-EEEEchhcC--CceEEEECCCCCcEEE
Confidence            3489999999987666654432221                12345666654 333333333  55678887666 5569


Q ss_pred             eeecChhhhhhHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRL  479 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~  479 (498)
                      |.|+|.+++..|++||+.
T Consensus        78 f~a~s~~e~~~Wi~ai~~   95 (96)
T cd01260          78 FAAETLDDLSQWVNHLIT   95 (96)
T ss_pred             EEeCCHHHHHHHHHHHHh
Confidence            999999999999999974

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.07  E-value=0.064  Score=44.61  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  209 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~  209 (498)
                      .+++.|++-+|++..+..+...+++.   ..+..-|.++..++..   ......+...+-.++++|.++..+.|..+..+
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~---ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK---TENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh---ccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            35678999999999999999998876   5667779999888762   22233455678899999999999999998888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL  246 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l  246 (498)
                      +.||.-+..           ...|++++...+++|..
T Consensus        82 ~~la~~l~s-----------~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGS-----------VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence            888877655           34445555677777654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.07  E-value=0.013  Score=36.97  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      ++++++|.++...|+              +++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence            578999999999999              999999999999999974

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=96.05  E-value=0.0088  Score=48.98  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             cccccCCcccccccccCCCCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHH
Q 010864          426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIR  478 (498)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~  478 (498)
                      ...|+++.+ +|.++.|..+-+-+.|.+-+..+ -+|+.+++.++.+.|..+|+
T Consensus        44 ~gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~   96 (98)
T cd01245          44 IGLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQ   96 (98)
T ss_pred             cceeecccc-EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHh
Confidence            347888888 99999997666568888876665 46777777799999999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.98  E-value=0.038  Score=58.04  Aligned_cols=102  Identities=20%  Similarity=0.094  Sum_probs=90.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      .+|+-..|+.++..|+...|... ....+|+.++...|-              .-.|-..+.++|.++-..+-.++-+|.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g~  684 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLGN  684 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcch
Confidence            46899999999999999998654 457899999999998              899999999999999888889999899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      ++..    +.+.+.|+       ..|++|+.++|+++.+.+.|-.+-+
T Consensus       685 ~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  685 AYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            8888    88888887       6999999999999999998887766

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.96  E-value=0.013  Score=37.11  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ++++++|.++.++|++          ++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence            4789999999999999          99999999999999974

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=95.96  E-value=0.0091  Score=48.32  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|+++||+|....|..+-......              ......|+|....-+....     ....|.|.+..+.+ ||
T Consensus        13 k~Wk~RwFvL~~g~L~Yyk~~~~~~--------------~~~~G~I~L~~~~i~~~~~-----~~~~F~i~~~~~r~~~L   73 (91)
T cd01247          13 NGWQDRYFVLKEGNLSYYKSEAEKS--------------HGCRGSIFLKKAIIAAHEF-----DENRFDISVNENVVWYL   73 (91)
T ss_pred             CCCceEEEEEECCEEEEEecCccCc--------------CCCcEEEECcccEEEcCCC-----CCCEEEEEeCCCeEEEE
Confidence            4799999999765555433211100              0123445555422221111     13567776556455 99


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.++.+.|++||..
T Consensus        74 ~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          74 RAENSQSRLLWMDSVVR   90 (91)
T ss_pred             EeCCHHHHHHHHHHHhh
Confidence            99999999999999963

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=95.94  E-value=0.0089  Score=48.78  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             chhhhhhhhccchhh--hhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce
Q 010864          383 HSDWKRSQFVLNHEG--LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  460 (498)
                      -..|+++||+|+..+  |..+.....                ..+...|+|..+..+....+    ....|.|.|..--.
T Consensus        14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------~~p~G~I~L~~~~~~~~~~~----~~~~F~i~t~~r~y   73 (95)
T cd01265          14 LRGRRSRWFALDDRTCYLYYYKDSQD----------------AKPLGRVDLSGAAFTYDPRE----EKGRFEIHSNNEVI   73 (95)
T ss_pred             CcCceeEEEEEcCCCcEEEEECCCCc----------------ccccceEECCccEEEcCCCC----CCCEEEEEcCCcEE
Confidence            458999999998543  444322211                12344566665433322222    23578888755445


Q ss_pred             eeeecChhhhhhHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~  480 (498)
                      +|.|+|.++++.|+.||...
T Consensus        74 ~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          74 ALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EEECCCHHHHHHHHHHHHhh
Confidence            99999999999999999764

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.33  Score=46.11  Aligned_cols=140  Identities=15%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             hccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------
Q 010864          137 QRILTFAAKRYANAIERN-----PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------  205 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------  205 (498)
                      ...+.++..+|++|..+.     |+.+..-...+.-..+.-+              .++|+..|++++.+--..      
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma  149 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMA  149 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHH
Confidence            456667777777776552     4433333333333334444              899999999999883332      


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .+.+...+.+|..    ..++.+|-..+.+-...+   ++.+  ++.-.++...-.+|....+|          ..|..+
T Consensus       150 ~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~---~~~~~y~~~~k~~va~ilv~L~~~Dy----------v~aekc  212 (308)
T KOG1585|consen  150 FELYGKCSRVLVR----LEKFTEAATAFLKEGVAA---DKCDAYNSQCKAYVAAILVYLYAHDY----------VQAEKC  212 (308)
T ss_pred             HHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHH---HHHhhcccHHHHHHHHHHHHhhHHHH----------HHHHHH
Confidence            2455666777777    888888875443322222   2333  22333344444555556677          999999


Q ss_pred             HHHHHHh----cCCCHHHHHHHHHHHHH
Q 010864          284 FRAAIQL----QFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       284 ~~~Al~l----~P~~~~a~~~Lg~~~~~  307 (498)
                      |+..-++    .+++..++.||-..|-.
T Consensus       213 ~r~~~qip~f~~sed~r~lenLL~ayd~  240 (308)
T KOG1585|consen  213 YRDCSQIPAFLKSEDSRSLENLLTAYDE  240 (308)
T ss_pred             hcchhcCccccChHHHHHHHHHHHHhcc
Confidence            9998776    46777888887776543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.78  E-value=0.024  Score=37.88  Aligned_cols=37  Identities=32%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL  246 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l  246 (498)
                      +.++.+||.+|..    +|++++|+.++++++..+++.+.-
T Consensus         2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G~   38 (42)
T PF13374_consen    2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLGP   38 (42)
T ss_dssp             HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhcc
Confidence            4678999999999    999999999999999999887643

>smart00028 TPR Tetratricopeptide repeats

Probab=95.74  E-value=0.015  Score=35.46  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      .+++++|.++..+|++          ++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence            5789999999999999          99999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.63  E-value=0.021  Score=34.79  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL  205 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  205 (498)
                      .+++++|.++..+++              +++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence            578999999999999              999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.57  E-value=0.042  Score=53.51  Aligned_cols=65  Identities=22%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      .|+.+.|.       ..|+.|+.++|++++++..+|.......+.          -+|-.+|-+|+.++|.+.+++.|..
T Consensus       129 ~Gk~ekA~-------~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  129 DGKLEKAM-------TLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             ccchHHHH-------HHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhh
Confidence            89999998       799999999999999999999999888888          9999999999999999999998876


Q ss_pred             HH
Q 010864          303 TV  304 (498)
Q Consensus       303 ~~  304 (498)
                      ..
T Consensus       192 RT  193 (472)
T KOG3824|consen  192 RT  193 (472)
T ss_pred             cc
Confidence            43

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.50  E-value=0.69  Score=47.37  Aligned_cols=162  Identities=14%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------------C-----------
Q 010864          148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------------C-----------  202 (498)
Q Consensus       148 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------------~-----------  202 (498)
                      -..+..+|-+.+++..++.++..+|+              +..|.+..++||-.              +           
T Consensus        30 ~~ll~~~PyHidtLlqls~v~~~~gd--------------~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~   95 (360)
T PF04910_consen   30 INLLQKNPYHIDTLLQLSEVYRQQGD--------------HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR   95 (360)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence            34568899999999999999999999              77777777776532              1           


Q ss_pred             -CCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHhcCcchHHhhhhh
Q 010864          203 -PTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQ-ALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       203 -p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~-a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                       +.|-   .+.+.....+.+    +|-+..|.       +.++-.+.+||. ++- +++.+-....+.++|         
T Consensus        96 ~~eNR~fflal~r~i~~L~~----RG~~rTAl-------E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y---------  155 (360)
T PF04910_consen   96 RPENRQFFLALFRYIQSLGR----RGCWRTAL-------EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY---------  155 (360)
T ss_pred             cccchHHHHHHHHHHHHHHh----cCcHHHHH-------HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH---------
Confidence             1111   233444444555    77777777       689989999998 664 444555555566776         


Q ss_pred             HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          277 VRTAISKFRAAIQLQF-----DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l~P-----~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                       +--+..++.......     ..+...+.++.+++.+++.....    .............|...+.+|+..-|.-.
T Consensus       156 -~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~----~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  156 -QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQ----SSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             -HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccc----cccccccccchhHHHHHHHHHHHHhHHHH
Confidence             666666665544211     13456778888888888731000    00111112234677778888888777543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.57  Score=45.81  Aligned_cols=112  Identities=19%  Similarity=0.101  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      +.-+.-+.-....|+              +.+|...|..++...|++..+...++.+|..    .|+.+.|..       
T Consensus       135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~-------  189 (304)
T COG3118         135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQA-------  189 (304)
T ss_pred             HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHH-------
Confidence            344555666777888              9999999999999999999999999999999    999999884       


Q ss_pred             HHHHHHhcCCCCHHHHHHHH-----HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          239 NYEKAVQLNWNSPQALNNWG-----LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg-----~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      .+    ...|.+...--..+     ..+.+....          .+ +..+++.+..+|++..+-+.|+..|...|+
T Consensus       190 iL----~~lP~~~~~~~~~~l~a~i~ll~qaa~~----------~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~  251 (304)
T COG3118         190 IL----AALPLQAQDKAAHGLQAQIELLEQAAAT----------PE-IQDLQRRLAADPDDVEAALALADQLHLVGR  251 (304)
T ss_pred             HH----HhCcccchhhHHHHHHHHHHHHHHHhcC----------CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            33    23343322211111     223333332          21 245677788899999999999999999998

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=1.5  Score=49.38  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      -+.+..|..+|.+..+.|.              ..+|++.|-+|     +++..|.+.-.+..+    .|.|++-+..+.
T Consensus      1101 ~n~p~vWsqlakAQL~~~~--------------v~dAieSyika-----dDps~y~eVi~~a~~----~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGL--------------VKDAIESYIKA-----DDPSNYLEVIDVASR----TGKYEDLVKYLL 1157 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCc--------------hHHHHHHHHhc-----CCcHHHHHHHHHHHh----cCcHHHHHHHHH
Confidence            4668899999999999999              99999999776     667777777777777    888888776553

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.39  E-value=0.22  Score=40.13  Aligned_cols=66  Identities=20%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCc
Q 010864          191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAI  267 (498)
Q Consensus       191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~  267 (498)
                      .+..++++++.+|++..+.+.++..+..    .|++++|+       ..+-.+++.++++  ..+...+=.++..+|.-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            4677899999999999999999999999    99999999       5778888888765  56666666677777765

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.37  Score=51.08  Aligned_cols=126  Identities=17%  Similarity=0.069  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          189 EEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~~~~a~~~--lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .-++..+...+.+++.+...+..  +...+..    .+....+.       ...+.++..+|.+..+..|||.++...|.
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~~  116 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDGL  116 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence            33677777777788888776433  4677777    78886666       58899999999999999999999998887


Q ss_pred             cchHHhhhhhHHHHHHHHH-HHHHhcCCCHHHHHHH------HHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHH
Q 010864          267 IVPAREKQTIVRTAISKFR-AAIQLQFDFHRAIYNL------GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  339 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~-~Al~l~P~~~~a~~~L------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  339 (498)
                      .          -.++..+. -+....|++......+      |..+..+++                   -.++..++.+
T Consensus       117 ~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~l~~  167 (620)
T COG3914         117 Q----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-------------------TAEAELALER  167 (620)
T ss_pred             H----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-------------------HHHHHHHHHH
Confidence            6          55555444 4999999999888777      444444444                   4667777788


Q ss_pred             HHhcCCCHHHHHHHH
Q 010864          340 AHALKPSYSVYSSAL  354 (498)
Q Consensus       340 Al~l~p~~~~~~~~l  354 (498)
                      +..+.|.+.+...++
T Consensus       168 ~~d~~p~~~~~~~~~  182 (620)
T COG3914         168 AVDLLPKYPRVLGAL  182 (620)
T ss_pred             HHHhhhhhhhhHhHH
Confidence            888888887544443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.35  E-value=0.22  Score=40.19  Aligned_cols=70  Identities=24%  Similarity=0.165  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 010864          143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA  220 (498)
Q Consensus       143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--~~a~~~lg~~~~~~~  220 (498)
                      .+..+++.++.+|++.++.+.+|..+...|+              +++|++.+-..++.++++  -.+...+=.++..  
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~--   70 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL--   70 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence            4677899999999999999999999999999              999999999999998875  4455555555555  


Q ss_pred             HHcCCHHHHH
Q 010864          221 KMRGRTKEAE  230 (498)
Q Consensus       221 ~~~g~~~eA~  230 (498)
                        +|.-+.-.
T Consensus        71 --lg~~~plv   78 (90)
T PF14561_consen   71 --LGPGDPLV   78 (90)
T ss_dssp             --H-TT-HHH
T ss_pred             --cCCCChHH
Confidence              66654444

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=95.31  E-value=0.014  Score=49.72  Aligned_cols=95  Identities=16%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             hccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccc--ccCCCC
Q 010864          368 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA--CADLTL  445 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  445 (498)
                      .|||+.-.   ..+.-..|+++||+|...-+.....++...             ...+...|+|........  +-.-.-
T Consensus         4 ~GfL~~~q---~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-------------~~~Plg~I~L~~c~~~~v~~~~r~~c   67 (122)
T cd01263           4 HGFLTMFE---DTSGFGAWHRRWCALEGGEIKYWKYPDDEK-------------RKGPTGLIDLSTCTSSEGASAVRDIC   67 (122)
T ss_pred             ceeEEEEe---ccCCCCCceEEEEEEeCCEEEEEcCCCccc-------------cCCceEEEEhhhCcccccccCChhhc
Confidence            46666421   113456999999999865554444333210             012344566665443322  222234


Q ss_pred             CCCCeeeEeecCCc--------------------eeeeecChhhhhhHHHHHH
Q 010864          446 PPGAGLCIETIHGP--------------------VFLVADSWEALDGWLDAIR  478 (498)
Q Consensus       446 p~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~  478 (498)
                      |+.++|.+++.+-.                    +||-||+.++++.|+.||.
T Consensus        68 ~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain  120 (122)
T cd01263          68 ARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN  120 (122)
T ss_pred             CCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence            56666666643211                    5888999999999999985

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.30  E-value=0.87  Score=45.91  Aligned_cols=100  Identities=11%  Similarity=0.039  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~-~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      ..-|++.++-+|++..+|..+...-......... ..+.....+.-+..|++||+.+|++...+..+=.+..+.-..   
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~---   81 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS---   81 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---
Confidence            3468889999999999999988776662111111 444555677888999999999999999998888888888777   


Q ss_pred             HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNL  301 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~L  301 (498)
                             ++....+++++..+|++...|...
T Consensus        82 -------~~l~~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   82 -------EKLAKKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             -------HHHHHHHHHHHHHCCCChHHHHHH
Confidence                   888999999999999999888654

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=95.26  E-value=0.019  Score=46.17  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL  462 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  462 (498)
                      ...|.++||+|....+..+.......              ......|++... ++..+.+.. -..+.|.|.|...+.+|
T Consensus        13 ~~~W~kr~~~L~~~~l~~y~~~~~~~--------------~~~~~~i~l~~~-~v~~~~~~~-~~~~~f~i~~~~~~~~f   76 (94)
T cd01250          13 NKEWKKRWFVLKNGQLTYHHRLKDYD--------------NAHVKEIDLRRC-TVRHNGKQP-DRRFCFEVISPTKTWHF   76 (94)
T ss_pred             CCCceEEEEEEeCCeEEEEcCCcccc--------------cccceEEeccce-EEecCcccc-CCceEEEEEcCCcEEEE
Confidence            45799999999876666543322110              112233555432 233322211 14678888887777799


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.+++..|++||+.
T Consensus        77 ~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          77 QADSEEERDDWISAIQE   93 (94)
T ss_pred             ECCCHHHHHHHHHHHhc
Confidence            99999999999999963

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.26  E-value=0.55  Score=39.60  Aligned_cols=89  Identities=20%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864          134 RSRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL  201 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  201 (498)
                      ....|.|++|...|.++....-.            ++-+|..|+.++..+|+              |++++..-+++|..
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRY   84 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHH
Confidence            34568899999999999887532            34568899999999999              99988888888875


Q ss_pred             -------CCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864          202 -------CPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY  240 (498)
Q Consensus       202 -------~p~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~  240 (498)
                             +.+..    .+.++.+.++..    +|+.++|++.|+.|.+..
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agEMi  130 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGEMI  130 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHH
Confidence                   54433    455788999999    999999996555554433

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.23  E-value=4.1  Score=41.47  Aligned_cols=174  Identities=19%  Similarity=0.066  Sum_probs=104.6

Q ss_pred             hhhcHHHHHHHHHHhhhcch------hhH----HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC-----
Q 010864          112 LAEQNNAAMELINSVTGVDE------EGR----SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS-----  176 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~------~~~----~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~-----  176 (498)
                      ..|+++.|..-|+..+..-.      .|+    .++|..+.|+.+-+++...-|..+.++...=......|++..     
T Consensus       132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            34667777777766554331      111    356888888888888888888887777666556666666200     


Q ss_pred             ----------CCCC------------CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          177 ----------LDST------------SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       177 ----------~~~~------------~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                                ++..            ...-+.+...|...-.+++++.|+...+-..-+.+|+.    .|+..++-    
T Consensus       212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~----  283 (531)
T COG3898         212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGS----  283 (531)
T ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhh----
Confidence                      0000            01112335666777777778888887777777778887    88888887    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHcchh
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ---LQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~---l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                         ..++.+-+.+|.- +    ++.+|.....-          +.++.-++++-+   +.|++.+....++.+-+.-|+.
T Consensus       284 ---~ilE~aWK~ePHP-~----ia~lY~~ar~g----------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~  345 (531)
T COG3898         284 ---KILETAWKAEPHP-D----IALLYVRARSG----------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF  345 (531)
T ss_pred             ---hHHHHHHhcCCCh-H----HHHHHHHhcCC----------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence               5666666666632 2    22223322222          334444444433   4677777777777766666654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.20  E-value=1.9  Score=38.57  Aligned_cols=83  Identities=17%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      ..+..+..+-..    .++.+++.       ..+...--+.|+.+..-..-|.++...|++          .+|+..|+.
T Consensus        11 ~gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~   69 (160)
T PF09613_consen   11 GGLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRE   69 (160)
T ss_pred             HHHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHH
Confidence            345555555555    78888888       577767788999999999999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcch
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      ..+-.|.++.+--.++.|++.+|+
T Consensus        70 l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   70 LEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HhccCCCChHHHHHHHHHHHHcCC
Confidence            999999999999999999999997

>PRK10941 hypothetical protein; Provisional

Probab=95.13  E-value=0.16  Score=49.71  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      ....||=.+|.+    .++++.|+       ++.++.+.++|+++.-+...|.+|.++|.+          ..|...++.
T Consensus       182 Rml~nLK~~~~~----~~~~~~AL-------~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~  240 (269)
T PRK10941        182 KLLDTLKAALME----EKQMELAL-------RASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSY  240 (269)
T ss_pred             HHHHHHHHHHHH----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHH
Confidence            345666667777    88888888       799999999999999999999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHH
Q 010864          287 AIQLQFDFHRAIYNL  301 (498)
Q Consensus       287 Al~l~P~~~~a~~~L  301 (498)
                      -++..|+++.+-.-.
T Consensus       241 fl~~~P~dp~a~~ik  255 (269)
T PRK10941        241 FVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHhCCCchhHHHHH
Confidence            999999998765543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.06  E-value=0.14  Score=36.87  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      +.+|.++..+.+    +|+|.+|.       .+.+.+|+.+|+|.++......+-.
T Consensus         2 d~lY~lAig~yk----l~~Y~~A~-------~~~~~lL~~eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYK----LGEYEKAR-------RYCDALLEIEPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH----hhhHHHHH-------HHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            468899999999    99999999       7999999999999999877666543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.04  E-value=0.15  Score=48.10  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC------CCH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFH  295 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P------~~~  295 (498)
                      ...+++|++.|.-|+-.++. ...+| .-+..+..++++|..+|+.   .....-+..|...|++|++...      +..
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            45778888877777766542 22222 2467788999999999986   5566677889999999987642      235


Q ss_pred             HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       296 ~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .+.|.+|.+..++|+                   +++|..+|.+.+.......
T Consensus       166 ~l~YLigeL~rrlg~-------------------~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  166 TLLYLIGELNRRLGN-------------------YDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHHhCC-------------------HHHHHHHHHHHHcCCCCCC
Confidence            789999999999999                   8999999999988755444

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=95.04  E-value=0.027  Score=45.60  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC----CCCCCCeeeEeecC
Q 010864          382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL----TLPPGAGLCIETIH  457 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~  457 (498)
                      ....|+++||+|....+.-......             .........|++.++ .+....+.    ..+..+.|.+.+..
T Consensus        13 ~~~~wk~r~~vL~~~~L~~~~~~~~-------------~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~   78 (104)
T PF00169_consen   13 SRKKWKKRYFVLRDSYLLYYKSSKD-------------KSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPN   78 (104)
T ss_dssp             SSSSEEEEEEEEETTEEEEESSTTT-------------TTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred             CCCCeEEEEEEEECCEEEEEecCcc-------------ccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCC
Confidence            3468999999998866654333221             011234567777777 55544444    46689999999888


Q ss_pred             C-ceeeeecChhhhhhHHHHHHHH
Q 010864          458 G-PVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       458 ~-~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      + ..+|.++|.+++..|.++|..+
T Consensus        79 ~~~~~~~~~s~~~~~~W~~~i~~~  102 (104)
T PF00169_consen   79 GKSYLFSAESEEERKRWIQAIQKA  102 (104)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHH
Confidence            8 6799999999999999999876

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.98  E-value=1.8  Score=39.89  Aligned_cols=97  Identities=11%  Similarity=0.036  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      ..++..+.+    .|++++|+       ..++.++..-.+   -.-+-.+|+.++.++|++          ++|+..+..
T Consensus        93 L~lAk~~ve----~~~~d~A~-------aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t  151 (207)
T COG2976          93 LELAKAEVE----ANNLDKAE-------AQLKQALAQTKDENLKALAALRLARVQLQQKKA----------DAALKTLDT  151 (207)
T ss_pred             HHHHHHHHh----hccHHHHH-------HHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhc
Confidence            455666777    89999988       466666543322   235667899999999999          999888765


Q ss_pred             HHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          287 AIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       287 Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ..  ++++ +......|.++...|+                   -.+|...|++++...++..
T Consensus       152 ~~--~~~w~~~~~elrGDill~kg~-------------------k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         152 IK--EESWAAIVAELRGDILLAKGD-------------------KQEARAAYEKALESDASPA  193 (207)
T ss_pred             cc--cccHHHHHHHHhhhHHHHcCc-------------------hHHHHHHHHHHHHccCChH
Confidence            43  2232 2334557999999998                   6889999999999985544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.97  E-value=0.23  Score=51.69  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-  266 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-  266 (498)
                      ..+-...|+.|+...+.+...|.+...-..+    .+.+.+--       ..|.+++..+|+++..|..-+.-....+. 
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n  155 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN  155 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence            5566778999999999999999988776666    66566655       69999999999999999999988888776 


Q ss_pred             cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                      .          +.|...|.++|+.+|+.+..|..
T Consensus       156 i----------~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  156 I----------ESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             h----------HHHHHHHHHHhhcCCCChHHHHH
Confidence            5          99999999999999999988754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.86  E-value=0.16  Score=52.94  Aligned_cols=79  Identities=27%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      ......|+..|.+++...|.....+.+++.++...+=           .++.-.|+.....|++++|....+|+.|+.++
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLARAL  455 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999987653           12267799999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHH
Q 010864          217 SDRAKMRGRTKEAE  230 (498)
Q Consensus       217 ~~~~~~~g~~~eA~  230 (498)
                      ..    ++++.+|+
T Consensus       456 ~e----l~r~~eal  465 (758)
T KOG1310|consen  456 NE----LTRYLEAL  465 (758)
T ss_pred             HH----HhhHHHhh
Confidence            99    99999999

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.80  E-value=0.62  Score=53.23  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=87.3

Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                      .....+|++|+..|++.-.-.|+.   .++.+..|.++..++...|+.    ..|.+|+..|++. .-.|.-+--|...+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            345678999999999999999874   478899999999866655654    5677777888864 34466677788888


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      .+|+++|++          ++-+++|.-|++.-|+++.+-.-.-.+.+++.
T Consensus       560 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (932)
T PRK13184        560 LVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH  600 (932)
T ss_pred             HHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            999999999          99999999999998888765444444444443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.77  E-value=0.35  Score=50.32  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010864          143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM  222 (498)
Q Consensus       143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~  222 (498)
                      -...|+.|+...+.|...|.+........+.              +.+--..|.+++..+|++++.|..-+.-.+.    
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe----  151 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE----  151 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh----
Confidence            3468999999999999999999888888887              8999999999999999999999988877777    


Q ss_pred             cCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          223 RGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       223 ~g~-~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                      .+. .+.|.       ..|.++|+.+|+++..|.-
T Consensus       152 ~n~ni~saR-------alflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  152 INLNIESAR-------ALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             hccchHHHH-------HHHHHHhhcCCCChHHHHH
Confidence            655 55555       7999999999999887653

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=94.58  E-value=0.032  Score=44.51  Aligned_cols=77  Identities=23%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC-ceee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~  462 (498)
                      ..|.++||+|....+..+.......              ......|+|.+.. ++..  ..  ..+.|.|.|..+ .++|
T Consensus        13 ~~W~~r~~vl~~~~L~~~~~~~~~~--------------~~~~~~i~l~~~~-~~~~--~~--~~~~F~i~~~~~~~~~~   73 (91)
T cd01246          13 KGWQKRWFVLDNGLLSYYKNKSSMR--------------GKPRGTILLSGAV-ISED--DS--DDKCFTIDTGGDKTLHL   73 (91)
T ss_pred             CCceeeEEEEECCEEEEEecCccCC--------------CCceEEEEeceEE-EEEC--CC--CCcEEEEEcCCCCEEEE
Confidence            5899999999876665544332210              1122334444321 2211  11  257899988774 5689


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.+++..|+.||+-
T Consensus        74 ~a~s~~e~~~Wi~al~~   90 (91)
T cd01246          74 RANSEEERQRWVDALEL   90 (91)
T ss_pred             ECCCHHHHHHHHHHHHh
Confidence            99999999999999974

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.45  E-value=0.17  Score=36.41  Aligned_cols=43  Identities=14%  Similarity=0.070  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      +.++.++..+.++|+|          ++|..+.+.+|+++|++..+..-...+
T Consensus         2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4678999999999999          999999999999999998876655444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.44  E-value=1.5  Score=44.93  Aligned_cols=87  Identities=20%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--c-----C------------CCC---HHHHHH
Q 010864          199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--L-----N------------WNS---PQALNN  256 (498)
Q Consensus       199 l~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~--l-----~------------P~~---~~a~~~  256 (498)
                      |..+|-+.+++..++.++..    +|+...|.++.++|+-.|++++.  .     +            +.|   -.+++.
T Consensus        33 l~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r  108 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR  108 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence            34589999999999999999    99999999999999999998862  2     2            122   244666


Q ss_pred             HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHH
Q 010864          257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIY  299 (498)
Q Consensus       257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~  299 (498)
                      ....+.+.|-+          ..|.++.+-.+.++|. |+-...
T Consensus       109 ~i~~L~~RG~~----------rTAlE~~KlLlsLdp~~DP~g~l  142 (360)
T PF04910_consen  109 YIQSLGRRGCW----------RTALEWCKLLLSLDPDEDPLGVL  142 (360)
T ss_pred             HHHHHHhcCcH----------HHHHHHHHHHHhcCCCCCcchhH
Confidence            66777788888          9999999999999999 765433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.34  E-value=0.08  Score=35.24  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      +.++++||.+|..+|++          ++|+.++++++++.
T Consensus         2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRY----------EEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHHH
Confidence            46899999999999999          99999999999873

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.12  E-value=8.4  Score=40.04  Aligned_cols=135  Identities=16%  Similarity=0.051  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHH--HHHHHHHHhcCC---CCHHHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW--KQA--TKNYEKAVQLNW---NSPQALNNWGLA  260 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~--~~A--l~~~~~Al~l~P---~~~~a~~~lg~~  260 (498)
                      -++|+..++.+++..+.+..+.+..-. +.+     ..|.+|+...  .+-  +..|-.-+.+-|   .+.+.-|.|+.+
T Consensus       396 dekalnLLk~il~ft~yD~ec~n~v~~-fvK-----q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA  469 (549)
T PF07079_consen  396 DEKALNLLKLILQFTNYDIECENIVFL-FVK-----QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA  469 (549)
T ss_pred             cHHHHHHHHHHHHhccccHHHHHHHHH-HHH-----HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence            567788888888888777655433222 222     2333333110  000  011111122223   356666777655


Q ss_pred             --HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864          261 --LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  338 (498)
Q Consensus       261 --l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  338 (498)
                        ++..|+|          .++.-+-.-..++.| .+.++.-+|.|++...+                   |.+|-.|+.
T Consensus       470 EyLysqgey----------~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-------------------Y~eA~~~l~  519 (549)
T PF07079_consen  470 EYLYSQGEY----------HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-------------------YQEAWEYLQ  519 (549)
T ss_pred             HHHHhcccH----------HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-------------------HHHHHHHHH
Confidence              5667887          999999888999999 79999999999999998                   999998864


Q ss_pred             HHHhcCCCHH----HHHHHHHHHHccC
Q 010864          339 AAHALKPSYS----VYSSALRLVRSML  361 (498)
Q Consensus       339 ~Al~l~p~~~----~~~~~l~~~~~~l  361 (498)
                         .+-|++.    ....++.+....+
T Consensus       520 ---~LP~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  520 ---KLPPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             ---hCCCchhhHHHHHHHHHHHHHHhh
Confidence               4556544    4556666655443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=2.1  Score=41.18  Aligned_cols=120  Identities=11%  Similarity=0.038  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      -.+|+..-..++.++|.+.-+|...-.++..+   ..+..+-+       .+..+.++-+|+|-+.|...-.+...+|+.
T Consensus        59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l---~~dL~~El-------~~l~eI~e~npKNYQvWHHRr~ive~l~d~  128 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHL---MSDLNKEL-------EYLDEIIEDNPKNYQVWHHRRVIVELLGDP  128 (318)
T ss_pred             CHHHHHHHHHHHHhCcccchHHHHHHHHHHHh---HHHHHHHH-------HHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence            56788888889999999999888877777761   23344444       789999999999999999999999999998


Q ss_pred             chHHhhhhhHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          268 VPAREKQTIVR-TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       268 ~~a~~~~~~~~-~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                                . .-+.+.+.++..+..+-.+|...-.++...+.                   ++.-..|....++.+--
T Consensus       129 ----------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~-------------------~~~EL~y~~~Lle~Di~  179 (318)
T KOG0530|consen  129 ----------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD-------------------YEDELAYADELLEEDIR  179 (318)
T ss_pred             ----------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHhhh
Confidence                      6 77889999999999999999999999988886                   66666666666665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.00  E-value=3.5  Score=40.58  Aligned_cols=124  Identities=17%  Similarity=0.007  Sum_probs=84.6

Q ss_pred             HhhccHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhc-CcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864          135 SRQRILTFAAKRYANAIERN-PED-------YDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRL----  201 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~-P~~-------~~a~~~lg~~~~~~g-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  201 (498)
                      .++|+++.|..+|.++-... ..+       .+.+|+.|......+ +              ++.|+..+++|+++    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~   69 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKP   69 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhh
Confidence            46899999999999986654 333       345677777777777 6              99999999999988    


Q ss_pred             CC------C----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHH
Q 010864          202 CP------T----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  271 (498)
Q Consensus       202 ~p------~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~  271 (498)
                      ..      +    ...++..|+.+|..    .+.++.    +++|....+.+-.-.|+.+..+...=.++.+.++.    
T Consensus        70 ~~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~----  137 (278)
T PF08631_consen   70 GKMDKLSPDGSELRLSILRLLANAYLE----WDTYES----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE----  137 (278)
T ss_pred             hhccccCCcHHHHHHHHHHHHHHHHHc----CCChHH----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh----
Confidence            21      1    12456777777777    776643    33455566655556677666664444455556777    


Q ss_pred             hhhhhHHHHHHHHHHHHHh
Q 010864          272 EKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l  290 (498)
                            +++.+.+.+.+.-
T Consensus       138 ------~~~~~~L~~mi~~  150 (278)
T PF08631_consen  138 ------EEYEEILMRMIRS  150 (278)
T ss_pred             ------hHHHHHHHHHHHh
Confidence                  7777788877765

It is also involved in sporulation [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.82  E-value=0.095  Score=49.18  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=54.4

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  206 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  206 (498)
                      ...++.+.|.+.|.+++++-|+....|+.+|......|+              ++.|.+.|++.++++|.+.
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCcccc
Confidence            346888999999999999999999999999999999999              9999999999999999864

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.75  Score=46.90  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=109.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ++..+++-+.+...++..+|+...+|+.+-.++...+.            .++..=+..+.++++.+|.+..+|...=.+
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV  154 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFV  154 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence            34567888899999999999999999999999998776            137888999999999999998888776666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH--HhhhhhHHHHHHHHHHHHHhcCC
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--REKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a--~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      +..    ..+.   ..+..+-+.+..+++.-++.|-.+|.+...++..+-.-+.-  .-....+..-+..-..|+-.+|+
T Consensus       155 ~~~----~~~~---~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~  227 (421)
T KOG0529|consen  155 VEQ----AERS---RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE  227 (421)
T ss_pred             HHH----Hhcc---cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence            554    2222   01222234688999999999999999999998854322100  11233456667778888889999


Q ss_pred             CHHHHHH
Q 010864          294 FHRAIYN  300 (498)
Q Consensus       294 ~~~a~~~  300 (498)
                      +..+|+.
T Consensus       228 DqS~WfY  234 (421)
T KOG0529|consen  228 DQSCWFY  234 (421)
T ss_pred             ccceeee
Confidence            9999887

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.73  E-value=0.097  Score=49.12  Aligned_cols=54  Identities=20%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      +.+.|.+.|.+++++.|.....|+.+|....+    .|+++.|.       +.|++.++++|.+.
T Consensus        10 D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~   63 (287)
T COG4976          10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDH   63 (287)
T ss_pred             ChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCcccc
Confidence            49999999999999999999999999999988    99999988       79999999999764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.68  E-value=5  Score=35.89  Aligned_cols=84  Identities=18%  Similarity=0.023  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      .++..+..+-...++              .+++...+...--+.|+....-..-|..+..    .|++.+|+       .
T Consensus        11 ~gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------r   65 (160)
T PF09613_consen   11 GGLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------R   65 (160)
T ss_pred             HHHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------H
Confidence            345555666666667              9999999999999999999999999999999    99999999       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .++...+-.|..+.+--.++.|++.+|+.
T Consensus        66 lLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   66 LLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            88988888899999999999999999985

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.45  E-value=1.9  Score=37.29  Aligned_cols=84  Identities=21%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864          250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-LQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  327 (498)
Q Consensus       250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~  327 (498)
                      ..+..+++++++....+.       .+.++.|..++..++ -+|.. -+..|.|+..++++++                 
T Consensus        31 s~~s~f~lAwaLV~S~~~-------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-----------------   86 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDT-------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-----------------   86 (149)
T ss_pred             hHHHHHHHHHHHHcccch-------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-----------------
Confidence            678899999999877664       566899999999997 45543 4678889999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864          328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  359 (498)
Q Consensus       328 ~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~  359 (498)
                        |+.+..|....++..|+|.+....-..+.+
T Consensus        87 --Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied  116 (149)
T KOG3364|consen   87 --YSKSLRYVDALLETEPNNRQALELKETIED  116 (149)
T ss_pred             --HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence              999999999999999999976665555443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.45  E-value=5  Score=42.93  Aligned_cols=165  Identities=9%  Similarity=-0.050  Sum_probs=118.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWA  213 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~~~a~~~lg  213 (498)
                      ...|+++...-.|++++--...+.+.|...+.-....|+              .+-|-..+.++.++ .|+.+..+...+
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a  373 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEA  373 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence            457889999999999998888899999999999998888              88888888888887 455666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-cC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-QF  292 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-~P  292 (498)
                      ..-..    .|++..|.       ..+++...--|+...+-........++|..          +.+.. +...+.. .+
T Consensus       374 ~f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~----------~~~~~-~~~l~s~~~~  431 (577)
T KOG1258|consen  374 RFEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL----------EDANY-KNELYSSIYE  431 (577)
T ss_pred             HHHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch----------hhhhH-HHHHHHHhcc
Confidence            66666    88999888       688888766699888888888888888887          66653 2222222 11


Q ss_pred             --CC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          293 --DF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  353 (498)
Q Consensus       293 --~~----~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~  353 (498)
                        .+    ...+.+.+...+...+                  ....|...+.+++...|++......
T Consensus       432 ~~~~~~i~~~l~~~~~r~~~~i~~------------------d~~~a~~~l~~~~~~~~~~k~~~~~  480 (577)
T KOG1258|consen  432 GKENNGILEKLYVKFARLRYKIRE------------------DADLARIILLEANDILPDCKVLYLE  480 (577)
T ss_pred             cccCcchhHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHhhhcCCccHHHHHH
Confidence              11    2333334443333322                  1467788888999999998854433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=0.41  Score=46.36  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      ...+.+.++++.|..+.++.+.++|.++.-+..+|.+|.++|-              +.-|+..++..++..|+.+.+-.
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhCCCchHHHH
Confidence            3346778999999999999999999999999999999999999              99999999999999999877654


Q ss_pred             HHH
Q 010864          211 NWA  213 (498)
Q Consensus       211 ~lg  213 (498)
                      -..
T Consensus       254 ir~  256 (269)
T COG2912         254 IRA  256 (269)
T ss_pred             HHH
Confidence            433

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=93.37  E-value=0.085  Score=45.30  Aligned_cols=78  Identities=19%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC-----
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-----  458 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----  458 (498)
                      ..|.++||+|....|........                ......|+|.++ .+..+.+..  ..+.|.+.+..+     
T Consensus        14 ~~WkkRwfvL~~~~L~yyk~~~~----------------~~~~g~I~L~~~-~v~~~~~~~--~~~~F~i~~~~~~~~i~   74 (125)
T cd01252          14 KTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENV-SIREVEDPS--KPFCFELFSPSDKQQIK   74 (125)
T ss_pred             CCeEeEEEEEECCEEEEEcCCCC----------------CCceEEEECCCc-EEEEcccCC--CCeeEEEECCccccccc
Confidence            57999999998766654332211                112445666643 344433322  223444433222     


Q ss_pred             ---------------ce-eeeecChhhhhhHHHHHHHH
Q 010864          459 ---------------PV-FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       459 ---------------~~-~~~~~~~~~~~~~~~a~~~~  480 (498)
                                     .+ ||.|+|.+++..|++||+-+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~  112 (125)
T cd01252          75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKAS  112 (125)
T ss_pred             cccccccccccccCceEEEEECCCHHHHHHHHHHHHHH
Confidence                           34 48899999999999999754

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.32  E-value=2.2  Score=36.96  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      ....+++++++....+           ..+..+.+..++..++ -+|. .-+..|.|+..+.+    .++|+.++     
T Consensus        32 ~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~-----   91 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL-----   91 (149)
T ss_pred             HHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH-----
Confidence            4667888888877655           3458899999999997 5565 45688999999999    89988888     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          236 ATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                        .+.+..++.+|+|.++.-..-.+.-+
T Consensus        92 --~yvd~ll~~e~~n~Qa~~Lk~~ied~  117 (149)
T KOG3364|consen   92 --RYVDALLETEPNNRQALELKETIEDK  117 (149)
T ss_pred             --HHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence              79999999999999887655554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=2.5  Score=44.05  Aligned_cols=137  Identities=18%  Similarity=0.118  Sum_probs=95.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC
Q 010864          134 RSRQRILTFAAKRYANAIERN---PE-------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP  203 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~---P~-------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  203 (498)
                      ..-.|++.+|++....+.+..   |.       .+..++.+|..-..-+.              |+.|...|..|+++-.
T Consensus       333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~  398 (629)
T KOG2300|consen  333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTE  398 (629)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhh
Confidence            455799999998888877654   44       35567788887777787              9999999999999844


Q ss_pred             C-C--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCC----------HHHHHHHHHHHHHhcCcch
Q 010864          204 T-L--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS----------PQALNNWGLALQELSAIVP  269 (498)
Q Consensus       204 ~-~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~----------~~a~~~lg~~l~~~g~~~~  269 (498)
                      . +  +.+..|++.+|..    .|+-+.-           .+++ .+.|.|          ..+++-.|.....++++  
T Consensus       399 ~~dl~a~~nlnlAi~YL~----~~~~ed~-----------y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l--  461 (629)
T KOG2300|consen  399 SIDLQAFCNLNLAISYLR----IGDAEDL-----------YKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL--  461 (629)
T ss_pred             HHHHHHHHHHhHHHHHHH----hccHHHH-----------HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH--
Confidence            3 3  4456788999988    7764432           2233 234442          34566667777777777  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHcchh
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFDFHR--------AIYNLGTVLYGLAED  311 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~~~~--------a~~~Lg~~~~~~g~~  311 (498)
                              .||....++.++..  +++        .+.-||.+....|+.
T Consensus       462 --------nEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~  501 (629)
T KOG2300|consen  462 --------NEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNT  501 (629)
T ss_pred             --------HHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcch
Confidence                    99999999999886  233        344566777777753

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.16  E-value=2.9  Score=45.66  Aligned_cols=75  Identities=16%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHH----------hcCCC-CHHHHHHHHHHHHHhcCcch
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKAV----------QLNWN-SPQALNNWGLALQELSAIVP  269 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~------~~Al~~~~~Al----------~l~P~-~~~a~~~lg~~l~~~g~~~~  269 (498)
                      ..|...+.-+..    .|+|.+|..+|      .+|+.+|.+.-          +..|+ -.+++..+|.-|...|+...
T Consensus       825 ~~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka  900 (1636)
T KOG3616|consen  825 SLYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA  900 (1636)
T ss_pred             HHHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence            455566666777    99999999888      67888887642          12233 34678889999999999876


Q ss_pred             H---HhhhhhHHHHHHHHH
Q 010864          270 A---REKQTIVRTAISKFR  285 (498)
Q Consensus       270 a---~~~~~~~~~Ai~~~~  285 (498)
                      |   +-+.|+++.|+..|+
T Consensus       901 ae~~flea~d~kaavnmyk  919 (1636)
T KOG3616|consen  901 AEEHFLEAGDFKAAVNMYK  919 (1636)
T ss_pred             HHHHHHhhhhHHHHHHHhh
Confidence            6   334566666665543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.06  E-value=0.28  Score=47.88  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                      |..+|.+|+.+.|++...++.||.+....|+.          =.|+-+|-+++-..--++.+..||...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999          999999999998877779999999999988

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>smart00233 PH Pleckstrin homology domain

Probab=92.60  E-value=0.17  Score=40.09  Aligned_cols=86  Identities=24%  Similarity=0.336  Sum_probs=58.6

Q ss_pred             CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC-CCCCCeeeEeecCC-c
Q 010864          382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-LPPGAGLCIETIHG-P  459 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~-~  459 (498)
                      ....|++++++|....+.-........             .......|++.++ .+....+.. .+...+|.+.+..+ .
T Consensus        14 ~~~~~~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~   79 (102)
T smart00233       14 KKKSWKKRYFVLFNSTLLYYKSEKAKK-------------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRS   79 (102)
T ss_pred             ccCCceEEEEEEECCEEEEEeCCCccc-------------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCce
Confidence            346799999999875555433222210             0234556777776 555554433 34567888887777 6


Q ss_pred             eeeeecChhhhhhHHHHHHHHH
Q 010864          460 VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       460 ~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .+|.++|.+++..|.++|+.+.
T Consensus        80 ~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       80 YLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEEEcCCHHHHHHHHHHHHHhh
Confidence            7999999999999999998753

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.41  E-value=0.96  Score=34.99  Aligned_cols=50  Identities=18%  Similarity=0.101  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      ..+.-+-.    .|++.+|+.+|++|+..+.+++...|++..-......+..-+
T Consensus        11 ~~AVe~D~----~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~   60 (75)
T cd02682          11 INAVKAEK----EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK   60 (75)
T ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            33444445    999999999999999999999999999887655555444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.29  E-value=11  Score=37.51  Aligned_cols=173  Identities=18%  Similarity=0.065  Sum_probs=95.7

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC------------
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------------  203 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p------------  203 (498)
                      +..+-.+-|.....|+++||..+.+|..|+.--...                ..+|.+.+++||+...            
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T----------------i~~AE~l~k~ALka~e~~yr~sqq~qh~  259 (556)
T KOG3807|consen  196 RERNPPARIKAAYQALEINNECATAYVLLAEEEATT----------------IVDAERLFKQALKAGETIYRQSQQCQHQ  259 (556)
T ss_pred             HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh----------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            345556677888899999999999998887643322                5666677776665411            


Q ss_pred             -----------CCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcc
Q 010864          204 -----------TLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV  268 (498)
Q Consensus       204 -----------~~~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~  268 (498)
                                 .+...|  ..|+.+-.+    +|+..||+       +.++...+-.|-  -...+-||-.++.++.-| 
T Consensus       260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QAY-  327 (556)
T KOG3807|consen  260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQAY-  327 (556)
T ss_pred             ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence                       111222  345555555    88888888       466655555552  234556666667666655 


Q ss_pred             hHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCC-----CCCChhHHHHHHHHHHHHHHh
Q 010864          269 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP-----REVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       269 ~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~Al~  342 (498)
                               ..-...+-+-=.+ -|..+.+.|.-+.+-.+.-      +....+     ...+.  .-..|++.+.+|.+
T Consensus       328 ---------ADvqavLakYDdislPkSA~icYTaALLK~RAV------a~kFspd~asrRGLS~--AE~~AvEAihRAvE  390 (556)
T KOG3807|consen  328 ---------ADVQAVLAKYDDISLPKSAAICYTAALLKTRAV------SEKFSPETASRRGLST--AEINAVEAIHRAVE  390 (556)
T ss_pred             ---------HHHHHHHHhhccccCcchHHHHHHHHHHHHHHH------HhhcCchhhhhccccH--HHHHHHHHHHHHhh
Confidence                     2222222111111 2444444443332211110      000000     01111  13568888999999


Q ss_pred             cCCCHHHHHHH
Q 010864          343 LKPSYSVYSSA  353 (498)
Q Consensus       343 l~p~~~~~~~~  353 (498)
                      ++|..+.|..-
T Consensus       391 FNPHVPkYLLE  401 (556)
T KOG3807|consen  391 FNPHVPKYLLE  401 (556)
T ss_pred             cCCCCcHHHHH
Confidence            99998876544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.29  E-value=1.3  Score=51.27  Aligned_cols=122  Identities=17%  Similarity=0.046  Sum_probs=92.2

Q ss_pred             HHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 010864          142 FAAKRYAN-AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNW  212 (498)
Q Consensus       142 ~A~~~~~~-al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~~~~a~~~l  212 (498)
                      +++..+.+ .-.+.|.....+..++.++..+++              +++|+..-.+|.-+        .|+....|.++
T Consensus       956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen  956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred             hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence            34445553 334678899999999999999999              99999998888765        45667788999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      +...+.    .+....|+..+..|.....-.. +..|.-+....|++.++...+++          +.|+.+.+.|+.+.
T Consensus      1022 al~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1022 ALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAKN 1087 (1236)
T ss_pred             HHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence            988888    8888888854443332221111 23577778889999999999999          99999999999864

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.06  E-value=8.5  Score=34.97  Aligned_cols=137  Identities=17%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--C--HHH
Q 010864          135 SRQRILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--L--HDA  208 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~--~~a  208 (498)
                      .+.+..++|+..|...-.-.-..  .-+.+..|.+..+.|+              -..|+..|..+-.-.|-  -  -.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------------ta~AV~aFdeia~dt~~P~~~rd~A  134 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------------TAAAVAAFDEIAADTSIPQIGRDLA  134 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------------HHHHHHHHHHHhccCCCcchhhHHH
Confidence            34577788888888766554332  2356788899999999              99999999998776443  1  234


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV--QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al--~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      ...-+.++.+    .|-|++-..       .. ..|  .-+|--..+.--||.+-++.|++          ..|...|.+
T Consensus       135 Rlraa~lLvD----~gsy~dV~s-------rv-epLa~d~n~mR~sArEALglAa~kagd~----------a~A~~~F~q  192 (221)
T COG4649         135 RLRAAYLLVD----NGSYDDVSS-------RV-EPLAGDGNPMRHSAREALGLAAYKAGDF----------AKAKSWFVQ  192 (221)
T ss_pred             HHHHHHHHhc----cccHHHHHH-------Hh-hhccCCCChhHHHHHHHHhHHHHhccch----------HHHHHHHHH
Confidence            5566777888    899888762       22 223  34455678888999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHc
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      ... +-+.++...+.+.++..+
T Consensus       193 ia~-Da~aprnirqRAq~mldl  213 (221)
T COG4649         193 IAN-DAQAPRNIRQRAQIMLDL  213 (221)
T ss_pred             HHc-cccCcHHHHHHHHHHHHH
Confidence            877 666677777777776554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.02  E-value=8.1  Score=37.98  Aligned_cols=102  Identities=20%  Similarity=0.155  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHH---hcCCCC----
Q 010864          187 LLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAV---QLNWNS----  250 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~----p~~----~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~Al~~~~~Al---~l~P~~----  250 (498)
                      +++.|...|.|+-.+.    |+.    +..+||.|..+..    .+ ++++|...+++|...+++.-   ...|+.    
T Consensus         8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3999999999987764    432    4678999999998    99 99999999999998887633   333332    


Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                      ..++..|+.+|...+.+       ...++|....+.+-.-.|+.+..+.
T Consensus        84 ~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~  125 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFL  125 (278)
T ss_pred             HHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            45677888888887776       2335566666666566677666663

It is also involved in sporulation [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.96  E-value=0.69  Score=53.40  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             HHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 010864          188 LEEACK------KYD-EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL  259 (498)
Q Consensus       188 ~~~A~~------~~~-~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~  259 (498)
                      +.+|.+      .+. ....++|.....|..|+.++..    .|++++|+..-.+|.-.+++.+.++ |+....+.|++.
T Consensus       948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen  948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred             hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence            555555      555 4444588999999999999999    9999999988888888999999888 567788999998


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                      .....++.          ..|...+.++..+        .|.-.....|++.++...++                   +.
T Consensus      1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-------------------~d 1074 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-------------------AD 1074 (1236)
T ss_pred             HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-------------------HH
Confidence            88888888          8899998888876        46666777899999888887                   67


Q ss_pred             HHHHHHHHHHhc
Q 010864          332 QSAIYIAAAHAL  343 (498)
Q Consensus       332 ~A~~~~~~Al~l  343 (498)
                      .|+.|.+.|+++
T Consensus      1075 ~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1075 TALRYLESALAK 1086 (1236)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.32  E-value=2.3  Score=46.41  Aligned_cols=159  Identities=21%  Similarity=0.190  Sum_probs=91.9

Q ss_pred             HHhhccHHHHHHHHHH------HHHhC----CCCH-HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH--
Q 010864          134 RSRQRILTFAAKRYAN------AIERN----PEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--  200 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~------al~~~----P~~~-~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~--  200 (498)
                      +.+..++++|+++|.+      ++++.    |... ..--.+|.-+.+.|+              ++.|+.+|-.|--  
T Consensus       671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q--------------~daainhfiea~~~~  736 (1636)
T KOG3616|consen  671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ--------------LDAAINHFIEANCLI  736 (1636)
T ss_pred             HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh--------------HHHHHHHHHHhhhHH
Confidence            5566788888888765      44432    3222 223456777777787              7777766644321  


Q ss_pred             -----------------h-----CCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHH------Hh
Q 010864          201 -----------------L-----CPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQ------ATKNYEKA------VQ  245 (498)
Q Consensus       201 -----------------l-----~p~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------Al~~~~~A------l~  245 (498)
                                       +     +.+.. ..|-.++.-|..    .|+|+-|.++|.+      |+.+|-++      .+
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHHHHHHHhccccHHHHHH
Confidence                             1     11111 233445666666    8888888877643      45544433      21


Q ss_pred             c----C-CCC-HHHHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHHHHH------HHh----cCCC-HHHHHHHHHHH
Q 010864          246 L----N-WNS-PQALNNWGLALQELSAIVPA---REKQTIVRTAISKFRAA------IQL----QFDF-HRAIYNLGTVL  305 (498)
Q Consensus       246 l----~-P~~-~~a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~~~A------l~l----~P~~-~~a~~~Lg~~~  305 (498)
                      +    . |.. ...|...+.-+-+.|+|.+|   +-..|..+.||..|.+.      |++    +|+. .+.+..+|.-|
T Consensus       813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~  892 (1636)
T KOG3616|consen  813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKEL  892 (1636)
T ss_pred             HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHH
Confidence            1    1 332 33455566667788888766   34567778888888764      222    3332 35566677777


Q ss_pred             HHcch
Q 010864          306 YGLAE  310 (498)
Q Consensus       306 ~~~g~  310 (498)
                      ...|+
T Consensus       893 e~~g~  897 (1636)
T KOG3616|consen  893 EAEGD  897 (1636)
T ss_pred             HhccC
Confidence            76666

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=91.29  E-value=0.22  Score=41.06  Aligned_cols=81  Identities=19%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             Cchhhhhhhhccchh-hhhhhcc-cchhhccccccCCCCCCCCCCccccccCCcccccccccCCC--CCCCCeeeEeecC
Q 010864          382 PHSDWKRSQFVLNHE-GLQQASK-NEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIH  457 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~  457 (498)
                      ....|+++||+|..+ .+..+.. +..                 .....+|+..+ ++..|.-..  -+....|.|.+..
T Consensus        13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~-----------------~~~~~i~l~~~-~v~~~~~~~~~~~~~~~F~i~~~~   74 (102)
T cd01241          13 YIKTWRPRYFLLKSDGSFIGYKEKPED-----------------GDPFLPPLNNF-SVAECQLMKTERPRPNTFIIRCLQ   74 (102)
T ss_pred             CCCCCeeEEEEEeCCCeEEEEecCCCc-----------------cCccccccCCe-EEeeeeeeeccCCCcceEEEEecc
Confidence            346899999999843 3443221 111                 11235565554 443343221  2333566665211


Q ss_pred             -C-c--eeeeecChhhhhhHHHHHHHH
Q 010864          458 -G-P--VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       458 -~-~--~~~~~~~~~~~~~~~~a~~~~  480 (498)
                       + .  -++.|+|.++++.|..||+-|
T Consensus        75 ~~~~~~r~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          75 WTTVIERTFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence             1 1  255799999999999999754

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.80  E-value=1.8  Score=33.68  Aligned_cols=30  Identities=13%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQ  252 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~  252 (498)
                      .|++++|+.+|.+|+..|..++...|+...
T Consensus        19 ~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~   48 (77)
T cd02683          19 EGRFQEALVCYQEGIDLLMQVLKGTKDEAK   48 (77)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence            899999999999999999999999986543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.77  E-value=4.7  Score=41.36  Aligned_cols=83  Identities=18%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             hhhHHhhccHHHHHHHHHHHHHhC--------CCCH----------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864          131 EEGRSRQRILTFAAKRYANAIERN--------PEDY----------DALYNWALVLQESADNVSLDSTSPSKDALLEEAC  192 (498)
Q Consensus       131 ~~~~~~~g~~~~A~~~~~~al~~~--------P~~~----------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~  192 (498)
                      +..++++++|..|+..|..+|++.        |..+          -+-..|..||..+++              .+-|+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlAL  248 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLAL  248 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHH
Confidence            444678999999999999998874        2211          234578899999999              99999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      ..-.+.+.++|.+..-|..-+.++..    +.+|.+|..
T Consensus       249 nh~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAar  283 (569)
T PF15015_consen  249 NHSHRSINLNPSYFRNHLRQAAVFRR----LERYSEAAR  283 (569)
T ss_pred             HHHhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHH
Confidence            99999999999999999999999998    999999884

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=90.76  E-value=0.36  Score=39.79  Aligned_cols=83  Identities=13%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ...|.++||+|....|.-+.......     ...       .....|++. .+.++.+.+.+ -+.++|.|.+..|.+ +
T Consensus        20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~-----~~~-------~~~~~i~l~-~~~i~~~~~~~-k~~~~F~l~~~~~~~~~   85 (104)
T cd01253          20 NRSWDNVYGVLCGQSLSFYKDEKMAA-----ENV-------HGEPPVDLT-GAQCEVASDYT-KKKHVFRLRLPDGAEFL   85 (104)
T ss_pred             CCCcceEEEEEeCCEEEEEecCcccc-----cCC-------CCCCcEecc-CCEEEecCCcc-cCceEEEEEecCCCEEE
Confidence            56899999999876654433221110     000       011123332 22233333322 244788887666655 6


Q ss_pred             eeecChhhhhhHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRL  479 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~  479 (498)
                      |-|+|-+++..|+.||+-
T Consensus        86 f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          86 FQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             EECCCHHHHHHHHHHHhc
Confidence            779999999999999963

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.73  E-value=1.1  Score=46.52  Aligned_cols=127  Identities=10%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .|++-.|-.....++...|.+++.....+.+...+|.              |+.+.....-+-.+-..-..+...+-...
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~  367 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL  367 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence            5788888888888999999999999999999999999              99998887766555444344444444555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      ..    +|++++|.       ....-.+.-.-.+++...--+..-..+|-+          ++|..++++.+.++|....
T Consensus       368 ~~----l~r~~~a~-------s~a~~~l~~eie~~ei~~iaa~sa~~l~~~----------d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        368 HG----LARWREAL-------STAEMMLSNEIEDEEVLTVAAGSADALQLF----------DKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             hc----hhhHHHHH-------HHHHHHhccccCChhheeeecccHHHHhHH----------HHHHHHHHHHhccCChhcc
Confidence            56    88888887       344544544444555444444444445555          9999999999999876543


Q ss_pred             HH
Q 010864          297 AI  298 (498)
Q Consensus       297 a~  298 (498)
                      .|
T Consensus       427 g~  428 (831)
T PRK15180        427 GW  428 (831)
T ss_pred             cc
Confidence            33

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.66  E-value=0.49  Score=46.43  Aligned_cols=87  Identities=13%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHcC
Q 010864          146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRG  224 (498)
Q Consensus       146 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~-lg~~~~~~~~~~g  224 (498)
                      .|.++....|+++..|...+......+.              |.+--..|.++++.+|.+++.|.. -+.-+..    .+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~a  156 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IA  156 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hc
Confidence            4556667789999999999988888888              999999999999999999998865 4455555    78


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                      +++.+.       ..|.++++++|+++..|.-.
T Consensus       157 ni~s~R-------a~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         157 NIESSR-------AMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             cHHHHH-------HHHHhhhccCCCCchHHHHH
Confidence            888877       79999999999999887543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.61  E-value=4.5  Score=43.59  Aligned_cols=100  Identities=11%  Similarity=0.056  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864          117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEE  190 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~  190 (498)
                      .+++.++.+++-..+...++..+|..+++.|...+..-|.|      +....++..+|..+.+              +++
T Consensus       347 kE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD~  412 (872)
T KOG4814|consen  347 KEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LDN  412 (872)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HHH
Confidence            34555555555444555788899999999999999876654      5567899999999999              999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      |.++|++|-+.+|.++-.....-.+...    -|.-.+|+....
T Consensus       413 A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~~  452 (872)
T KOG4814|consen  413 AVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCLQ  452 (872)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHHH
Confidence            9999999999999998888777777777    888888886443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.41  E-value=0.98  Score=36.55  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      .|++.+|++.+.+......+.....  -....++.++|.++...|++          ++|+..+++|+++.
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA   71 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence            8999999976665544433222111  02357789999999999999          99999999999984

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.28  E-value=0.93  Score=44.19  Aligned_cols=62  Identities=18%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864          143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD  218 (498)
Q Consensus       143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~  218 (498)
                      |+.+|.+|+.+.|++...|+.+|.++...|+              .-.|+-+|-+++...--...+..||...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--------------~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD--------------DLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT---------------HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccc--------------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999              9999999999997755568899999888876

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.19  E-value=3.1  Score=38.02  Aligned_cols=99  Identities=24%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      -.++..+|..|.+.|+              +++|+++|.++......   ..+.++++-.+...    .+++........
T Consensus        36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~   97 (177)
T PF10602_consen   36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE   97 (177)
T ss_pred             HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence            4688999999999999              99999999998887544   23566677777777    999999986555


Q ss_pred             HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          235 QATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      +|....++     ..+..    ....-|..+...++|          .+|...|-.++.
T Consensus        98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~f----------~~AA~~fl~~~~  141 (177)
T PF10602_consen   98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRDF----------KEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhchH----------HHHHHHHHccCc
Confidence            55544443     22232    233445666667777          888888877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=90.13  E-value=22  Score=35.65  Aligned_cols=181  Identities=17%  Similarity=0.075  Sum_probs=115.4

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC---CCCC---------CCCchhhhHHHHHHHHHHHHHhC-
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV---SLDS---------TSPSKDALLEEACKKYDEATRLC-  202 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~---~~~~---------~~~~~~~~~~~A~~~~~~Al~l~-  202 (498)
                      +-+--++||..-.-.+.+-|..++++-.++..+++..+..   ..+|         ....+.+..+++.....+|+... 
T Consensus       208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~  287 (415)
T COG4941         208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR  287 (415)
T ss_pred             cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            3455688999999999999999999999999998876631   1222         23344567889999999998874 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      |.-....-.++.++..    ..  ...-..|..-...|.-...+.|+ +.+-.|.+.++.+.--.          ..++.
T Consensus       288 pGPYqlqAAIaa~HA~----a~--~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp----------~agLa  350 (415)
T COG4941         288 PGPYQLQAAIAALHAR----AR--RAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGP----------AAGLA  350 (415)
T ss_pred             CChHHHHHHHHHHHHh----hc--ccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhH----------HhHHH
Confidence            3433344444444433    11  11112344444677766666664 44455566666555544          66666


Q ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          283 KFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       283 ~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                      ..+....-  -.++...+--.|..+.++|+                   ..+|...|.+|+.+.++......
T Consensus       351 ~ve~L~~~~~L~gy~~~h~~RadlL~rLgr-------------------~~eAr~aydrAi~La~~~aer~~  403 (415)
T COG4941         351 MVEALLARPRLDGYHLYHAARADLLARLGR-------------------VEEARAAYDRAIALARNAAERAF  403 (415)
T ss_pred             HHHHhhcccccccccccHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHhcCChHHHHH
Confidence            65554443  23445556667788888887                   67788888888888877664333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.09  E-value=29  Score=37.01  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHc
Q 010864          145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~~~~~~  223 (498)
                      -.|++++..-+-.++.|+..+..+...++.+..-+.-....-.-+++..+|++++..--. +...++.++.         
T Consensus       266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~---------  336 (656)
T KOG1914|consen  266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD---------  336 (656)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence            468889988899999999888877777664333333334444578888899988875332 3333333332         


Q ss_pred             CCHHHHHHH---HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchH-------------------------Hhhh
Q 010864          224 GRTKEAEEL---WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPA-------------------------REKQ  274 (498)
Q Consensus       224 g~~~eA~~~---~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a-------------------------~~~~  274 (498)
                        ++++...   +++....|++++.+.-.+ .-++.++-..-.+..-...|                         +.-.
T Consensus       337 --~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs  414 (656)
T KOG1914|consen  337 --YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS  414 (656)
T ss_pred             --hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence              2222211   222223333333222111 01111111111111111000                         1223


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ++..-|...|+-.++..++.+...+..-..+..++++
T Consensus       415 kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd  451 (656)
T KOG1914|consen  415 KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD  451 (656)
T ss_pred             CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence            3448888888888888888888777777777777763

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=89.78  E-value=0.53  Score=46.23  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCcchHH
Q 010864          193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPAR  271 (498)
Q Consensus       193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~~a~  271 (498)
                      -.|.++....|+++..|.....-..+    .|-+.+--       ..|.++++.+|.+++.|.. -..-+...+++    
T Consensus        94 f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani----  158 (435)
T COG5191          94 FELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI----  158 (435)
T ss_pred             EeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH----
Confidence            34556666788888888776655555    55444444       7999999999999999977 44556677777    


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          272 EKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                            +.+...|.++++++|+.+.+|+.
T Consensus       159 ------~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         159 ------ESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             ------HHHHHHHHhhhccCCCCchHHHH
Confidence                  99999999999999999998865

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=89.38  E-value=0.4  Score=40.90  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             hhhhhhhhccchhhhhhhcccchhh-ccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQ-VTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  462 (498)
                      ..|.++||+|.+.-+..+..+.... .+.=.- ..+..+.......+.+.     +..-+. -+..++|+|.|..=...|
T Consensus        31 ~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~-D~~f~v~~~~~~~~~~~-----~~~~~~-~~~~~~~~i~t~~R~~~l  103 (121)
T cd01254          31 DRWQKRWFIVKESFLAYMDDPSSAQILDVILF-DVDFKVNGGGKEDISLA-----VELKDI-TGLRHGLKITNSNRSLKL  103 (121)
T ss_pred             cCCcceeEEEeCCEEEEEcCCCCCceeeEEEE-cCCccEEeCCccccccc-----cccccc-CCCceEEEEEcCCcEEEE
Confidence            4799999999988887766544411 000000 00000000000001111     111111 356789999977777799


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.+.+.+|.++|..
T Consensus       104 ~a~s~~~~~~Wi~~i~~  120 (121)
T cd01254         104 KCKSSRKLKQWMASIED  120 (121)
T ss_pred             EeCCHHHHHHHHHHHHh
Confidence            99999999999999974

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.95  E-value=10  Score=33.51  Aligned_cols=71  Identities=13%  Similarity=-0.074  Sum_probs=63.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      .++++++.       ......--+.|+.+..-..-|.++...|++          .+|+..|+...+-.+..+..--.++
T Consensus        23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561        23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence            77888887       466666678899999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010864          303 TVLYGLAE  310 (498)
Q Consensus       303 ~~~~~~g~  310 (498)
                      .|++.+|+
T Consensus        86 ~CL~al~D   93 (153)
T TIGR02561        86 LCLNAKGD   93 (153)
T ss_pred             HHHHhcCC
Confidence            99999997

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.92  E-value=28  Score=37.11  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCh
Q 010864          254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---QFD----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP  326 (498)
Q Consensus       254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l---~P~----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~  326 (498)
                      +..+|.++..+|+.          ..|..+|..+++.   ...    .|.++|.||..|+.++.                
T Consensus       452 ~lL~g~~lR~Lg~~----------~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g----------------  505 (546)
T KOG3783|consen  452 YLLKGVILRNLGDS----------EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG----------------  505 (546)
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc----------------
Confidence            45566677777766          9999999998843   222    26899999999999985                


Q ss_pred             hHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHcc
Q 010864          327 NELYSQSAIYIAAAHALKPSYS-------VYSSALRLVRSM  360 (498)
Q Consensus       327 ~~~~~~A~~~~~~Al~l~p~~~-------~~~~~l~~~~~~  360 (498)
                        ...++..++.+|-+...++.       ..+.++..++..
T Consensus       506 --~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~~~r~~  544 (546)
T KOG3783|consen  506 --GLKEARALLLKAREYASDYELENRLHMRIQAALHTVRKL  544 (546)
T ss_pred             --ChHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHhcc
Confidence              15778888888888876665       344455555543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.80  E-value=0.92  Score=30.11  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV  244 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al  244 (498)
                      ++|..||.+-..    .++|.+|++.|++|+...++.+
T Consensus         2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l~   35 (38)
T PF10516_consen    2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEELL   35 (38)
T ss_pred             cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhc
Confidence            578889999999    9999999988888887776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.74  E-value=32  Score=38.82  Aligned_cols=147  Identities=14%  Similarity=0.034  Sum_probs=97.3

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----C
Q 010864          135 SRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L  205 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~  205 (498)
                      ...|++++|++..+.++..-|.+     ..++..+|.+..-.|+              +++|......+.++...    +
T Consensus       469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~~  534 (894)
T COG2909         469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVYH  534 (894)
T ss_pred             HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccHH
Confidence            34689999999999999887765     4567889999999999              99999999999888433    2


Q ss_pred             HHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          206 HDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       206 ~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      ...|  +..+.++..    +|+...+...-... ..+.+-+...|.......-.+.+++..-++          +.+..-
T Consensus       535 l~~~~~~~~s~il~~----qGq~~~a~~~~~~~-~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~~e  599 (894)
T COG2909         535 LALWSLLQQSEILEA----QGQVARAEQEKAFN-LIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAEAE  599 (894)
T ss_pred             HHHHHHHHHHHHHHH----hhHHHHHHHHHHHH-HHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhhHH
Confidence            3333  334666666    78333333211111 123333444566666666666666666667          777777


Q ss_pred             HHHHHHhc----C--CCHH-HHHHHHHHHHHcch
Q 010864          284 FRAAIQLQ----F--DFHR-AIYNLGTVLYGLAE  310 (498)
Q Consensus       284 ~~~Al~l~----P--~~~~-a~~~Lg~~~~~~g~  310 (498)
                      ..+.+++-    |  -... ++++|+.+++..|+
T Consensus       600 ar~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd  633 (894)
T COG2909         600 ARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD  633 (894)
T ss_pred             hhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC
Confidence            77777652    2  2222 33589999999998

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.50  E-value=25  Score=34.17  Aligned_cols=153  Identities=14%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      ..++++|++++.+....    +.+.|++.-|.++..-.++.     .+.+.+...++..++.....      ....+...
T Consensus         3 ~kky~eAidLL~~Ga~~----ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~------~~p~r~~f   72 (260)
T PF04190_consen    3 QKKYDEAIDLLYSGALI----LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP------EEPERKKF   72 (260)
T ss_dssp             TT-HHHHHHHHHHHHHH----HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T------T-TTHHHH
T ss_pred             cccHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------CcchHHHH
Confidence            36788999999888777    67778887777665554443     34555666788888877654      22335555


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHH----HHHHHHHhcCCCCHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-----QAT----KNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-----~Al----~~~~~Al~l~P~~~~a~~~lg  258 (498)
                      ..+|+++- +.-...-.++..|..+|..|.+    .|++.+|..+|-     .+.    -.+....+-.|.....+...+
T Consensus        73 i~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra  147 (260)
T PF04190_consen   73 IKAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA  147 (260)
T ss_dssp             HHHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred             HHHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            66666666 2222233588999999999999    999999998771     121    223333456677777777777


Q ss_pred             HH-HHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          259 LA-LQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       259 ~~-l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .+ |..+++.          ..|...+..-++.
T Consensus       148 VL~yL~l~n~----------~~A~~~~~~f~~~  170 (260)
T PF04190_consen  148 VLQYLCLGNL----------RDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHTTBH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCH----------HHHHHHHHHHHHH
Confidence            55 5566777          7777766655544

; PDB: 3LKU_E 2WPV_G.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.37  E-value=7.6  Score=44.68  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA  208 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a  208 (498)
                      ..+...+.|+.|+..|++.-.-.|+-   -++.+..|..+.++..       ...+...+++|+.-|++.- -.|.-+--
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~  554 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLH-GGVGAPLE  554 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhc-CCCCCchH
Confidence            34566789999999999999999875   4688999999988765       1222356888888887753 34555666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  255 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~  255 (498)
                      |...+.+|..    +|++.|-+       ++|.-|++..|+.+..-.
T Consensus       555 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        555 YLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCccHH
Confidence            7888888888    99999999       677888877777665433

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=88.31  E-value=0.38  Score=40.46  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             CCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010864          447 PGAGLCIETIHGPVFLVADSWEALDGWLDAIR  478 (498)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  478 (498)
                      ....+-+.|...-.+|.+++.++..+|.+||.
T Consensus        79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~  110 (112)
T PF15413_consen   79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQ  110 (112)
T ss_dssp             SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcEEECCCcEEEEEECCHHHHHHHHHHHH
Confidence            33445666666667999999999999999996

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.28  E-value=41  Score=36.27  Aligned_cols=162  Identities=8%  Similarity=0.036  Sum_probs=118.5

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchh
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKD  185 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~  185 (498)
                      ...+++...+.+........+.......+.+..|+..+..     +|.+   ...|......-...|+            
T Consensus       245 ~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~------------  312 (577)
T KOG1258|consen  245 KSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD------------  312 (577)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc------------
Confidence            3344444455555555444444455556666666666642     3333   3455555555666777            


Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQEL  264 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~  264 (498)
                        ++...-.|++++--...+...|.+....+..    .|+.+-|..       .+.++.+.. |+.+..+...+.+-...
T Consensus       313 --~~~~~~l~ercli~cA~Y~efWiky~~~m~~----~~~~~~~~~-------~~~~~~~i~~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  313 --FSRVFILFERCLIPCALYDEFWIKYARWMES----SGDVSLANN-------VLARACKIHVKKTPIIHLLEARFEESN  379 (577)
T ss_pred             --HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----cCchhHHHH-------HHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence              9999999999999999999999999999999    899998884       555555544 77788888888888888


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      |++          ..|...+++...--|+...+-..-......+|+
T Consensus       380 ~n~----------~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~  415 (577)
T KOG1258|consen  380 GNF----------DDAKVILQRIESEYPGLVEVVLRKINWERRKGN  415 (577)
T ss_pred             ccH----------HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence            898          999999999998779988777666666667665

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=6.8  Score=40.99  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-------
Q 010864          136 RQRILTFAAKRYANAIERNPE-D--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-------  205 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~-~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-------  205 (498)
                      .-+.++.|...|..|.++--. +  +-+-.|+|.+|...++                 +...|+-.=.+.|.+       
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-----------------~ed~y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD-----------------AEDLYKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc-----------------HHHHHHHHHhcCCCCCCcchHH
Confidence            357889999999998876432 2  3345688999999888                 444444444445552       


Q ss_pred             ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          206 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       206 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                         ..+++-.|...+.    ++++.||.....+.++.- .|-.++--.+..+..||.+..-.|+.          .++..
T Consensus       442 ~l~a~~~~v~glfaf~----qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~----------~es~n  506 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFK----QNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNT----------VESRN  506 (629)
T ss_pred             HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcch----------HHHHh
Confidence               2456666666666    999999995333333222 12222222355677888899999999          99998


Q ss_pred             HHHHHHHhc---CCCHHHHHH
Q 010864          283 KFRAAIQLQ---FDFHRAIYN  300 (498)
Q Consensus       283 ~~~~Al~l~---P~~~~a~~~  300 (498)
                      ..+-++.+.   ||.+..+..
T Consensus       507 mvrpamqlAkKi~Di~vqLws  527 (629)
T KOG2300|consen  507 MVRPAMQLAKKIPDIPVQLWS  527 (629)
T ss_pred             ccchHHHHHhcCCCchHHHHH
Confidence            888888774   555544443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.98  E-value=0.91  Score=30.14  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC  202 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  202 (498)
                      ++|..||.+-...++              |++|+..|+++|++.
T Consensus         2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence            578899999999999              999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.45  E-value=2  Score=28.16  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHH--HHHHHHhCCCC
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL  205 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~--~~~Al~l~p~~  205 (498)
                      ++.++.+|..+..+|+              +++|+..  |.-+..+++.|
T Consensus         1 ~e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence            3568899999999999              9999999  55888887764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=87.41  E-value=0.67  Score=36.11  Aligned_cols=81  Identities=25%  Similarity=0.313  Sum_probs=50.2

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecC-Cceee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVFL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~  462 (498)
                      ..|.+++++|....+.-........             .......|++.+ ..+....+.. ...++|.|.+.. ...+|
T Consensus        14 ~~w~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~   78 (96)
T cd00821          14 KGWKRRWFVLFNDLLLYYKKKSSKK-------------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLL   78 (96)
T ss_pred             CCccEEEEEEECCEEEEEECCCCCc-------------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEE
Confidence            5799999999866555433222100             122344555555 3333222211 345778887766 45689


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .+.|.+++..|.++|+.
T Consensus        79 ~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          79 QAESEEEREEWIEALQS   95 (96)
T ss_pred             EeCCHHHHHHHHHHHhc
Confidence            99999999999999974

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.21  E-value=4.8  Score=31.03  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      +++|+....+|++.               -.    .|++++|+.+|.+|+..|.+++...|+.
T Consensus         5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~   48 (77)
T smart00745        5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS   48 (77)
T ss_pred             HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence            56666666666443               34    8999999999999999999999988763

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.12  E-value=6.3  Score=38.69  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      ...++..++..+...|+              ++.++..+++.+.++|.+-.+|..+-.+|..    .|+...|+..|++.
T Consensus       152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l  213 (280)
T COG3629         152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence            45678889999999999              9999999999999999999999999999999    99999999877666


Q ss_pred             HHHHHHHHhcCC
Q 010864          237 TKNYEKAVQLNW  248 (498)
Q Consensus       237 l~~~~~Al~l~P  248 (498)
                      -.....-+..+|
T Consensus       214 ~~~~~edlgi~P  225 (280)
T COG3629         214 KKTLAEELGIDP  225 (280)
T ss_pred             HHHhhhhcCCCc
Confidence            655555555555

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=87.08  E-value=28  Score=37.09  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010864          148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK  227 (498)
Q Consensus       148 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~  227 (498)
                      ++-++.+|.|.++|+.|-.-+..+ .              +++..+.|++.+...|..+.+|.........    ..+|+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~----skdfe   70 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELA----SKDFE   70 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhhHH
Confidence            677899999999999998877666 6              9999999999999999999999887776666    77888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH---hcCCCHHHHHHHHH
Q 010864          228 EAEELWKQATKNYEKAVQLNWNSPQAL-NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ---LQFDFHRAIYNLGT  303 (498)
Q Consensus       228 eA~~~~~~Al~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~---l~P~~~~a~~~Lg~  303 (498)
                      .-+++|.+++.   +.+.     .+.| ..|-.+....|+..      +.-..-...|+-++.   .++....+|...+.
T Consensus        71 ~VEkLF~RCLv---kvLn-----lDLW~lYl~YVR~~~~~~~------~~r~~m~qAy~f~l~kig~di~s~siW~eYi~  136 (656)
T KOG1914|consen   71 SVEKLFSRCLV---KVLN-----LDLWKLYLSYVRETKGKLF------GYREKMVQAYDFALEKIGMDIKSYSIWDEYIN  136 (656)
T ss_pred             HHHHHHHHHHH---HHhh-----HhHHHHHHHHHHHHccCcc------hHHHHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence            87755554432   2222     3333 23444444455540      111112223333333   36666677776665


Q ss_pred             HH
Q 010864          304 VL  305 (498)
Q Consensus       304 ~~  305 (498)
                      .+
T Consensus       137 FL  138 (656)
T KOG1914|consen  137 FL  138 (656)
T ss_pred             HH
Confidence            44

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.07  E-value=7.6  Score=34.28  Aligned_cols=69  Identities=17%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .+++...+...--+.|+.......-|.++..    .|++.+|+       ..++...+-.+..+.+.-.++.|+.-+|+.
T Consensus        26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            8999999988888999999999999999999    99999999       688888887788898999999999999985

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.06  E-value=4.8  Score=31.05  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      +++|+..+.+|++.+               .    .|++++|+.+|.+|+..|.++++..|+.
T Consensus         3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~   46 (75)
T cd02678           3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP   46 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence            566777777775543               3    8999999999999999999999988854

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=86.45  E-value=5.1  Score=38.96  Aligned_cols=61  Identities=18%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                      .++++.|.       .+-++.+.++|+++.-+.-.|.+|.++|-+          .-|+..+...++.-|+++.+-.-
T Consensus       194 e~~~~~al-------~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~i  254 (269)
T COG2912         194 ELQWELAL-------RVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMI  254 (269)
T ss_pred             hhchHHHH-------HHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHH
Confidence            66666666       799999999999999999999999999999          99999999999999998766543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=86.24  E-value=11  Score=34.60  Aligned_cols=153  Identities=14%  Similarity=0.131  Sum_probs=96.6

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      +.+|++|...|..--.- -.++...+.+|..++. |.        -...+++..|+..|..+-.  -+.+.+..++|.++
T Consensus        48 ~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~-GK--------gG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~  115 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLA-GK--------GGDDASLSKAIRPMKIACD--ANIPQACRYLGLLH  115 (248)
T ss_pred             HHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhc-cc--------CCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence            34455555555443322 2456777888776543 33        0234459999999998865  66788889999988


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-cc-----hH--------HhhhhhHHHHHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-IV-----PA--------REKQTIVRTAIS  282 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~-----~a--------~~~~~~~~~Ai~  282 (498)
                      ..    .....++--...+|..++.++..+  ++..+-++|...|..-.+ +.     ++        ..-.++.+.|.+
T Consensus       116 ~~----g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q  189 (248)
T KOG4014|consen  116 WN----GEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ  189 (248)
T ss_pred             cc----CcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence            76    554445444556667899998866  567777777776653311 10     00        223577888888


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          283 KFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       283 ~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +--+|-++  +++.+.-|+...| .+|+
T Consensus       190 fa~kACel--~~~~aCAN~SrMy-klGD  214 (248)
T KOG4014|consen  190 FAIKACEL--DIPQACANVSRMY-KLGD  214 (248)
T ss_pred             HHHHHHhc--CChHHHhhHHHHH-HccC
Confidence            87777766  4566777777654 4553

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=86.12  E-value=0.84  Score=45.64  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-------------cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-------------LNWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-------------l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      +.|.-..+    .+++.+|...|.+++.++.. +.             +...-.....|++.+-.+.+.+          
T Consensus       227 ~~~~~~~k----k~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~----------  291 (372)
T KOG0546|consen  227 NIGNKEFK----KQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR----------  291 (372)
T ss_pred             ccchhhhh----hccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCC----------
Confidence            34445566    88888888888888777764 11             1111234566788888888888          


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      ..|+..-..+++.+++...+++..+..+..+.+                   +.++...+..+....|++..+...+.-+
T Consensus       292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~-------------------~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKN-------------------YDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             CcceeccccccccChhhCcHHHHHHhHHHhhhc-------------------hhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            999988888899999999999999999999998                   8999999999999999999888777766


Q ss_pred             Hcc
Q 010864          358 RSM  360 (498)
Q Consensus       358 ~~~  360 (498)
                      +..
T Consensus       353 ~~~  355 (372)
T KOG0546|consen  353 RQK  355 (372)
T ss_pred             hhH
Confidence            543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.07  E-value=26  Score=32.62  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcch
Q 010864          249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       249 ~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~Lg~~~~~~g~  310 (498)
                      +++...+.||..|.+.. .          ++|+..|-+++++...    +++++..|+.++..+++
T Consensus       139 ~t~elq~aLAtyY~krD-~----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  139 ETAELQYALATYYTKRD-P----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             CCHHHHHHHHHHHHccC-H----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            46778888887777443 3          8888888888887433    47888888888888887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=85.80  E-value=15  Score=40.13  Aligned_cols=103  Identities=19%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             hhcHHHHHHHHHHhhhcch--hhHHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhH
Q 010864          113 AEQNNAAMELINSVTGVDE--EGRSRQRILTFAAKRYANAIER--NPEDYDALYNWALVLQESADNVSLDSTSPSKDALL  188 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~  188 (498)
                      -|++++|..+|-.+-+.+-  +.+.+.|++-.-.++++.--.-  |..--.++.++|..+..+..              +
T Consensus       747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~--------------W  812 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME--------------W  812 (1189)
T ss_pred             hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH--------------H
Confidence            3556666665544333321  1123344444333333221100  11224689999999988888              8


Q ss_pred             HHHHHHHHHHHH----------------------hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          189 EEACKKYDEATR----------------------LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       189 ~~A~~~~~~Al~----------------------l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      ++|.++|.+.-.                      --|++...+-.+|.++..    .|.-++|.+.|
T Consensus       813 e~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s----vGMC~qAV~a~  875 (1189)
T KOG2041|consen  813 EEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS----VGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh----hchHHHHHHHH
Confidence            888888876421                      146677777778888888    88888888765

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.26  E-value=28  Score=39.88  Aligned_cols=61  Identities=15%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHhcCcchH--------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          249 NSPQALNNWGLALQELSAIVPA--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       249 ~~~~a~~~lg~~l~~~g~~~~a--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      ++..+|-..+.++...+.+.-|                    ++..|.|++-|..++.++-+..-+...+-.||.+|.+-
T Consensus      1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence            3556666666666655555444                    56788999999999999998887777788888888766


Q ss_pred             c
Q 010864          309 A  309 (498)
Q Consensus       309 g  309 (498)
                      .
T Consensus      1327 k 1327 (1666)
T KOG0985|consen 1327 K 1327 (1666)
T ss_pred             C
Confidence            5

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.14  E-value=5.9  Score=31.90  Aligned_cols=51  Identities=20%  Similarity=0.098  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~---------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      |.+|++.+.+.+.....         ...+..++|.++..    .|++++|+..+++|+...++
T Consensus        14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence            99999888888877332         24567888888888    99999999877777665554

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.00  E-value=32  Score=36.97  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=84.5

Q ss_pred             hhhhHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC----
Q 010864          184 KDALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN----  247 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l------------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~----  247 (498)
                      ...-|++|...|.-|+..            +|-+.+.+..++.++..    +|+.+.|.++.++++-.+++++.-.    
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~~  325 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIPF  325 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhccccccc
Confidence            345699999999999886            56667888999999988    9999999999999999999998432    


Q ss_pred             ----------CCCHH---HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcch
Q 010864          248 ----------WNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       248 ----------P~~~~---a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~  310 (498)
                                |.|-.   +++..-.-+.+.|=+          ..|.++++-.+.++|. ++-+...+-..|.-..+
T Consensus       326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar  392 (665)
T KOG2422|consen  326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR  392 (665)
T ss_pred             cccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH
Confidence                      22222   222333334455666          9999999999999998 88766666555555444

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=84.93  E-value=1.1  Score=37.11  Aligned_cols=80  Identities=14%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecC----C
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIH----G  458 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~----~  458 (498)
                      ..|+++||++....|...-..+..              .+.....+.+.   ..+..-|.++. ..+.|.+.+..    .
T Consensus        18 K~~KrrwF~lk~~~L~YyK~kee~--------------~~~p~i~lnl~---gcev~~dv~~~~~kf~I~l~~ps~~~~r   80 (106)
T cd01237          18 KGYKQYWFTFRDTSISYYKSKEDS--------------NGAPIGQLNLK---GCEVTPDVNVAQQKFHIKLLIPTAEGMN   80 (106)
T ss_pred             hhheeEEEEEeCCEEEEEccchhc--------------CCCCeEEEecC---ceEEcccccccccceEEEEecCCccCCe
Confidence            359999999976655544222210              01122333332   11122223333 35666666433    2


Q ss_pred             ceeeeecChhhhhhHHHHHHHH
Q 010864          459 PVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       459 ~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      .+||.++|.+..+.|..|.||+
T Consensus        81 ~y~l~cdsEeqya~Wmaa~rla  102 (106)
T cd01237          81 EVWLRCDNEKQYAKWMAACRLA  102 (106)
T ss_pred             EEEEECCCHHHHHHHHHHHHHh
Confidence            4799999999999999999985

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.91  E-value=2.7  Score=32.58  Aligned_cols=44  Identities=23%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      +++|+....+|++.+               .    .|++++|+.+|.+|+..|..+++..++.
T Consensus         3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~~   46 (75)
T cd02684           3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETDA   46 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence            667888887776544               3    8999999999999999999999877543

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.87  E-value=23  Score=32.55  Aligned_cols=136  Identities=18%  Similarity=0.052  Sum_probs=89.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+++..|++.|..+-.  -+.+.+..++|.+++.-..       ......+..+|.+++.++-.++  +..+.++|...|
T Consensus        86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~-------~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~  154 (248)
T KOG4014|consen   86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEK-------DRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY  154 (248)
T ss_pred             ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcC-------CccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence            4678899999998876  5688899999999876544       1122334889999999997654  566777777777


Q ss_pred             HHHHHH--c-----CCH-HHH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          217 SDRAKM--R-----GRT-KEA-----EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       217 ~~~~~~--~-----g~~-~eA-----~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      ...-..  .     |.. ..+     .+..++|+..-.+|.++  +++.+-.|+...|. +|+=     -.++.++|..+
T Consensus       155 ~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyk-lGDG-----v~Kde~~Aeky  226 (248)
T KOG4014|consen  155 MGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYK-LGDG-----VPKDEDQAEKY  226 (248)
T ss_pred             hccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHH-ccCC-----CCccHHHHHHH
Confidence            541000  0     111 000     12335566677777766  46788888888765 4432     24566889888


Q ss_pred             HHHHHHhc
Q 010864          284 FRAAIQLQ  291 (498)
Q Consensus       284 ~~~Al~l~  291 (498)
                      -.+|.++.
T Consensus       227 k~rA~e~~  234 (248)
T KOG4014|consen  227 KDRAKEIM  234 (248)
T ss_pred             HHHHHHHH
Confidence            88888774

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=84.71  E-value=46  Score=33.38  Aligned_cols=106  Identities=19%  Similarity=0.082  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cC---C---------CC-
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LN---W---------NS-  250 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~----l~---P---------~~-  250 (498)
                      ..+=|+.-..||++||..+.+|..|+.--      .--..+|++++++|++.-+-.+.    +.   +         .+ 
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEE------a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv  273 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAEEE------ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV  273 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhhhh------hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence            67778888999999999999999887654      44677888888887765443322    11   1         11 


Q ss_pred             -HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcc
Q 010864          251 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF--HRAIYNLGTVLYGLA  309 (498)
Q Consensus       251 -~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~--~~a~~~Lg~~~~~~g  309 (498)
                       ......|+.|-.++|+.          .+|++.|+...+-.|-.  -.++.||-.++..+.
T Consensus       274 l~YIKRRLAMCARklGrl----------rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q  325 (556)
T KOG3807|consen  274 LVYIKRRLAMCARKLGRL----------REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ  325 (556)
T ss_pred             hhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence             12334666777777777          99999999888776632  234556666655554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.37  E-value=18  Score=32.93  Aligned_cols=64  Identities=16%  Similarity=-0.024  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      ..++..+|.-|.+    .|++++|++       .|.++....-.   -.+.+.++-.+....+++          .....
T Consensus        36 r~~~~~l~~~~~~----~Gd~~~A~k-------~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~   94 (177)
T PF10602_consen   36 RMALEDLADHYCK----IGDLEEALK-------AYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEK   94 (177)
T ss_pred             HHHHHHHHHHHHH----hhhHHHHHH-------HHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHH
Confidence            4688999999999    999999994       66665544322   356778888888889998          88888


Q ss_pred             HHHHHHHh
Q 010864          283 KFRAAIQL  290 (498)
Q Consensus       283 ~~~~Al~l  290 (498)
                      +..+|-.+
T Consensus        95 ~i~ka~~~  102 (177)
T PF10602_consen   95 YIEKAESL  102 (177)
T ss_pred             HHHHHHHH
Confidence            88888776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.37  E-value=10  Score=41.10  Aligned_cols=86  Identities=9%  Similarity=-0.021  Sum_probs=69.6

Q ss_pred             hhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                      ...+|..+++.|...+..-|.+      +....++..+|..    +.+.+.|.       ++|+.|=+.+|.++-.....
T Consensus       366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHH
Confidence            3444999999999999986653      5678899999999    77777777       68888999999999888888


Q ss_pred             HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       258 g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      -.+....|.-          ++|+.+..+....
T Consensus       435 ~~~~~~E~~S----------e~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKS----------EEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcch----------HHHHHHHHHHHhh
Confidence            8888888888          7777776665544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.14  E-value=9.6  Score=35.92  Aligned_cols=175  Identities=19%  Similarity=0.230  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH----HHHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----VYSSA  353 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~----~~~~~  353 (498)
                      ++|+...+.-++-+|.+......|=.+|.-.|+                   |.+|...++.+-.+.|++.    .|.+.
T Consensus        18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGd-------------------w~kAl~Ql~l~a~l~p~~t~~a~lyr~l   78 (273)
T COG4455          18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD-------------------WEKALAQLNLAATLSPQDTVGASLYRHL   78 (273)
T ss_pred             HHHHHHHHHHHhcCCccccchhHHHHHHhhcch-------------------HHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            999999999999999999888888888999998                   9999999999999999887    23332


Q ss_pred             HHHHHccCCchhhh-hccccCCCCCCCCCCchhhhhhh---hccchhhhhhhcccchh---hcccccc------------
Q 010864          354 LRLVRSMLPLPYLK-AGYLTAPPAGIPVAPHSDWKRSQ---FVLNHEGLQQASKNEQK---QVTRSLS------------  414 (498)
Q Consensus       354 l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~---~~l~~~~~~~~~~~~~~---~~~~~~~------------  414 (498)
                      ++.       ..++ +-|.....|.....|...|...-   ..+.+++-...+..-.-   ...+..-            
T Consensus        79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawia  151 (273)
T COG4455          79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIA  151 (273)
T ss_pred             HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhh
Confidence            221       1122 22222344455556677786432   23333322211000000   0000001            


Q ss_pred             ---CCCCC---CCCCCccccccCCcccccccccC--C-CCC-CCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010864          415 ---GRTGD---FSPDRRAIRIEVPDIVSVSACAD--L-TLP-PGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       415 ---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-~~p-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                         .|.|.   +....+-+|||...|.|++...-  + -|- .+.-+++.  +|   .+||-|+=-.+-+. .|++||-+
T Consensus       152 DsD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~--dg~~~~a~LparY~gt~e~-ddalrLgr  228 (273)
T COG4455         152 DSDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLR--DGAIASALLPARYHGTGED-DDALRLGR  228 (273)
T ss_pred             hcccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEe--cCceeEEEeeeecCCCccc-hHHHHhcc
Confidence               11111   12223556999999988873222  1 111 23333433  23   25888876666665 67777754

>cd00900 PH-like Pleckstrin homology-like domain

Probab=84.05  E-value=0.87  Score=35.75  Aligned_cols=80  Identities=25%  Similarity=0.354  Sum_probs=50.9

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeec---CCc
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI---HGP  459 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~  459 (498)
                      ...|..+|++|....+.-........               .....+++..+. +....+.. -..+.|.+.+.   ...
T Consensus        16 ~~~w~~~~~~l~~~~l~~~~~~~~~~---------------~~~~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~   78 (99)
T cd00900          16 GKRWKRRWFFLFDDGLLLYKSDDKKE---------------IKPGSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRV   78 (99)
T ss_pred             ccCceeeEEEEECCEEEEEEcCCCCc---------------CCCCEEEccceE-EEECCCCC-CCCceEEEECCCCCcEE
Confidence            35899999999866555433322211               000245555555 44333221 24578888877   455


Q ss_pred             eeeeecChhhhhhHHHHHHH
Q 010864          460 VFLVADSWEALDGWLDAIRL  479 (498)
Q Consensus       460 ~~~~~~~~~~~~~~~~a~~~  479 (498)
                      ++|.+.+.+++..|.+||+.
T Consensus        79 ~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          79 FVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             EEEEcCCHHHHHHHHHHHhc
Confidence            79999999999999999974

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.82  E-value=9.7  Score=29.57  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010864          189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  247 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~  247 (498)
                      ..|+.+..+|++.+               .    .|+|.+|+.+|..|+..|..++...
T Consensus         4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~   43 (76)
T cd02681           4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG   43 (76)
T ss_pred             HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            45666666666554               4    8999999999999999999987555

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.75  E-value=1.1  Score=26.71  Aligned_cols=25  Identities=20%  Similarity=-0.000  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      .++.++|.++...|++          ++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~----------~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDP----------DEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence            5688999999999999          999888763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=83.60  E-value=1.1  Score=47.88  Aligned_cols=85  Identities=13%  Similarity=0.217  Sum_probs=52.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCCc-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGP-VF  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~-~~  461 (498)
                      ..|++++|.++...+.-.....+             ...+..+-.+.+.+|.++.|...+..| ..++|.+-|..|. +|
T Consensus       390 ~~wk~ry~~l~~~~l~~~~~~~~-------------~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~  456 (478)
T PTZ00267        390 MRWKKRYFYIGNGQLRISLSENP-------------ENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKII  456 (478)
T ss_pred             cchhhheEEecCCceEEEecccc-------------ccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEEE
Confidence            35888888886433332111111             011122334446677777776444444 5666666666665 58


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ++++|.++++.|..+|+-+.
T Consensus       457 ~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        457 AYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             EecCChHHHHHHHHHHHHHh
Confidence            99999999999999998764

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.57  E-value=11  Score=29.22  Aligned_cols=43  Identities=23%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      +.+|+..+.+|++.+               .    .|+|++|..+|.+++..|..+++..++
T Consensus         3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~   45 (75)
T cd02677           3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS   45 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence            566777777776544               3    799999999999999999999988765

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=83.55  E-value=61  Score=36.40  Aligned_cols=127  Identities=18%  Similarity=0.200  Sum_probs=91.3

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864          138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS  217 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~  217 (498)
                      +..++=+..++.-+.+++.+...+..|-.+++..|+              +++-...-.++.++.|..+..|.++..-..
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d--------------l~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~  158 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD--------------LEKLRQARLEMSEIAPLPPHLWLEWLKDEL  158 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            334455677788888899999999999999999999              998888888999999999999999887776


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .+.. .+...+...+|++|+..|        +++..|...+..+...+..   ..+.++++.-...|.+|++-
T Consensus       159 ~mt~-s~~~~~v~~~~ekal~dy--------~~v~iw~e~~~y~~~~~~~---~~~~~d~k~~R~vf~ral~s  219 (881)
T KOG0128|consen  159 SMTQ-SEERKEVEELFEKALGDY--------NSVPIWEEVVNYLVGFGNV---AKKSEDYKKERSVFERALRS  219 (881)
T ss_pred             hhcc-CcchhHHHHHHHHHhccc--------ccchHHHHHHHHHHhcccc---ccccccchhhhHHHHHHHhh
Confidence            5222 256666775555554444        3555666655555544442   33445558888888888874

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.09  E-value=15  Score=28.69  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=45.1

Q ss_pred             HHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864          119 AMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWA---LVLQESADNVSLDSTSPSKDALLEEACKKY  195 (498)
Q Consensus       119 A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg---~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  195 (498)
                      +...+++.+.+     +.+.+..+|+..+.++++..++..+.+..+|   .+|...|+              |.+.+++-
T Consensus         6 ak~~ie~GlkL-----Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk--------------yr~~L~fA   66 (80)
T PF10579_consen    6 AKQQIEKGLKL-----YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK--------------YREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHH-----hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence            34444444443     4578889999999999999988877666555   55667777              88888776


Q ss_pred             HHHHHh
Q 010864          196 DEATRL  201 (498)
Q Consensus       196 ~~Al~l  201 (498)
                      .+=+.+
T Consensus        67 ~~Q~~~   72 (80)
T PF10579_consen   67 LQQLEI   72 (80)
T ss_pred             HHHHHH
Confidence            554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.01  E-value=80  Score=34.83  Aligned_cols=126  Identities=15%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC--CCHH----HH
Q 010864          140 LTFAAKRYANAIERN-P---EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHD----AF  209 (498)
Q Consensus       140 ~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p--~~~~----a~  209 (498)
                      ...|+.+++-+++.. +   ..+.+++.+|.+|+.--.             ++++|..++.|++.+..  +..+    +.
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~-------------n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~  103 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETE-------------NLDLAETYLEKAILLCERHRLTDLKFRCQ  103 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            344888888888522 1   135678999999995544             39999999999999864  4333    34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHH-H-HHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWG-L-ALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg-~-~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      +.++.++.+    .+... |....++++..++.    .+. .....+.+- . .+...+++          ..|+..++.
T Consensus       104 ~ll~~i~~~----~~~~~-a~~~l~~~I~~~~~----~~~~~w~~~frll~~~l~~~~~d~----------~~Al~~L~~  164 (608)
T PF10345_consen  104 FLLARIYFK----TNPKA-ALKNLDKAIEDSET----YGHSAWYYAFRLLKIQLALQHKDY----------NAALENLQS  164 (608)
T ss_pred             HHHHHHHHh----cCHHH-HHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHHHhcccH----------HHHHHHHHH
Confidence            455555555    66666 88766666666664    111 122222222 1 12122566          999999999


Q ss_pred             HHHhc--CCCHHH
Q 010864          287 AIQLQ--FDFHRA  297 (498)
Q Consensus       287 Al~l~--P~~~~a  297 (498)
                      ...+.  ..++.+
T Consensus       165 ~~~~a~~~~d~~~  177 (608)
T PF10345_consen  165 IAQLANQRGDPAV  177 (608)
T ss_pred             HHHHhhhcCCHHH
Confidence            88875  455443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.94  E-value=8.3  Score=37.84  Aligned_cols=72  Identities=14%  Similarity=0.047  Sum_probs=59.3

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  192 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~  192 (498)
                      .+..+-...++.+.++.....+...|.+.+|+++.++++.++|-+...+..+-.+|..+|+              --.++
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~  333 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAI  333 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhh
Confidence            3455566677777776666668889999999999999999999999999999999999999              66666


Q ss_pred             HHHHHH
Q 010864          193 KKYDEA  198 (498)
Q Consensus       193 ~~~~~A  198 (498)
                      +.|++.
T Consensus       334 khyery  339 (361)
T COG3947         334 KHYERY  339 (361)
T ss_pred             hHHHHH
Confidence            666654

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=82.77  E-value=1.4  Score=36.76  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=53.1

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC---CCCeeeEeecCCce
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP---PGAGLCIETIHGPV  460 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~  460 (498)
                      ..|+|....||...+.-.....+                ..--.-|||.+|.+|+.+....+|   +.+.|.|.| +--+
T Consensus        14 ~~rKRhYWrLDsK~Itlf~~e~~----------------skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~v   76 (117)
T cd01239          14 NRRKKHYWRLDSKAITLYQEESG----------------SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNV   76 (117)
T ss_pred             cceeeeEEEecCCeEEEEEcCCC----------------CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEE
Confidence            35777777888766654322111                123558999999999988776443   777899998 5567


Q ss_pred             eeeecC---------------------hhhhhhHHHHHHH
Q 010864          461 FLVADS---------------------WEALDGWLDAIRL  479 (498)
Q Consensus       461 ~~~~~~---------------------~~~~~~~~~a~~~  479 (498)
                      |+|-.+                     -+.+..|-.||+.
T Consensus        77 Y~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~q  116 (117)
T cd01239          77 YFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQ  116 (117)
T ss_pred             EEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhc
Confidence            888442                     2234679999985

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.66  E-value=1.5  Score=26.13  Aligned_cols=24  Identities=25%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      .+++++|.++..+|+              +++|...++
T Consensus         2 ~a~~~la~~~~~~G~--------------~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGD--------------PDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHh
Confidence            578899999999999              999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=82.13  E-value=4  Score=26.68  Aligned_cols=33  Identities=12%  Similarity=-0.007  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH--HHHHHHhcCCC
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISK--FRAAIQLQFDF  294 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~--~~~Al~l~P~~  294 (498)
                      +.++.+|..++..|++          ++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence            4678899999999999          999999  65888877764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.86  E-value=8.5  Score=37.82  Aligned_cols=65  Identities=18%  Similarity=0.127  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      ...++..++..+..    .|+++.++       ..+++.+.++|-+-.+|..+-.+|...|+.          ..|+..|
T Consensus       152 ~~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y  210 (280)
T COG3629         152 FIKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAY  210 (280)
T ss_pred             HHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHH
Confidence            34677788888888    88888888       799999999999999999999999999999          9999999


Q ss_pred             HHHHHh
Q 010864          285 RAAIQL  290 (498)
Q Consensus       285 ~~Al~l  290 (498)
                      ++.-.+
T Consensus       211 ~~l~~~  216 (280)
T COG3629         211 RQLKKT  216 (280)
T ss_pred             HHHHHH
Confidence            987664

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=81.77  E-value=2.6  Score=35.67  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010864          447 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       447 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      +-++|+|.|..|.. .|-|.|.+++..|+++|..+...+
T Consensus        76 r~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~  114 (117)
T cd01230          76 KPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAF  114 (117)
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            78899999988766 667889999999999999987653

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.44  E-value=4.3  Score=31.18  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      .|++++|+.+|.+|+..|.+++...|+
T Consensus        19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~   45 (75)
T cd02656          19 DGNYEEALELYKEALDYLLQALKAEKE   45 (75)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            899999999999999999999988876

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=81.38  E-value=25  Score=34.59  Aligned_cols=78  Identities=15%  Similarity=0.002  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       190 ~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~-----------~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                      .-...++.-++.+|++..++..+|..+.+.+..           ..++..+..+.++|+..+.+|++++|....+...+-
T Consensus        61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~  140 (277)
T PF13226_consen   61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI  140 (277)
T ss_pred             hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            356666777888999999999999999987532           123344556778999999999999999999999998


Q ss_pred             HHHHHhcCc
Q 010864          259 LALQELSAI  267 (498)
Q Consensus       259 ~~l~~~g~~  267 (498)
                      .+-...|..
T Consensus       141 ~~s~~fgeP  149 (277)
T PF13226_consen  141 NISAYFGEP  149 (277)
T ss_pred             HHHhhcCCc
Confidence            888888876

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=81.35  E-value=2.6  Score=35.78  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=47.7

Q ss_pred             CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCcee
Q 010864          382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF  461 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  461 (498)
                      ....|..++.+|...-|.-.....+.......  .........+-..|+|. ..-++...|-+- +-++|++.|..|..|
T Consensus        22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~--~~~~~~~~~p~~~i~L~-~a~a~~a~dY~K-r~~VFrL~~~dg~e~   97 (119)
T PF15410_consen   22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPP--DIQSVENAKPDSSISLH-HALAEIASDYTK-RKNVFRLRTADGSEY   97 (119)
T ss_dssp             S---EEEEEEEEETTEEEEESSHHHHCCT-BS-----SS--E-----EE-T-T-EEEEETTBTT-CSSEEEEE-TTS-EE
T ss_pred             CCCCccEEeEEEECCEEEEEccCcccccCCcc--cccccccCcceeEEEec-ceEEEeCccccc-CCeEEEEEeCCCCEE
Confidence            45689999999866555433332221100000  00000001112234443 222333555554 899999999999886


Q ss_pred             e-eecChhhhhhHHHHHHHH
Q 010864          462 L-VADSWEALDGWLDAIRLV  480 (498)
Q Consensus       462 ~-~~~~~~~~~~~~~a~~~~  480 (498)
                      | -|.|.+++..|+++|-.+
T Consensus        98 Lfqa~~~~~m~~Wi~~IN~~  117 (119)
T PF15410_consen   98 LFQASDEEEMNEWIDAINYA  117 (119)
T ss_dssp             EEE-SSHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHhhh
Confidence            5 577999999999999765

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.39  E-value=16  Score=27.41  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      .|++++|+++|.+|+..+.+++...++
T Consensus        18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~   44 (69)
T PF04212_consen   18 AGNYEEALELYKEAIEYLMQALKSESN   44 (69)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999998864

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	498
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		2e-05

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +   ++G           A + Y +A+Q+N     A +N   ++ 
Sbjct: 74  PTFADAYSNMGNTLKEMQDVQG-----------ALQCYTRAIQINPAFADAHSNLA-SIH 121
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           + S  +P          AI+ +R A++L+ DF  A  NL   L
Sbjct: 122 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	498
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-27
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	8e-25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2d9v_A	130	Pleckstrin homology domain-containing protein fami	1e-04
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-04

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score =  106 bits (264), Expect = 4e-27
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 218 DRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
               M   T+ +   L++Q  ++ E   + N      L  WG  L ELS      + + +
Sbjct: 2   PLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61

Query: 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY 336
           ++ AI+KF  A+ +      A++ +G      A  T        P E      +  +  +
Sbjct: 62  IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT--------PDETEAKHNFDLATQF 113

Query: 337 IAAAHALKPSYSVYSSALRL 356
              A   +P  + Y  +L +
Sbjct: 114 FQQAVDEQPDNTHYLKSLEM 133

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 99.5 bits (247), Expect = 8e-25
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 137 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194
            RIL F    +   N  + NP D D L  W  VL E +   S          +++EA  K
Sbjct: 13  DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----ISDAKQMIQEAITK 68

Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------- 247
           ++EA  + P   +A +    A +  A +     EA+  +  AT+ +++AV          
Sbjct: 69  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128

Query: 248 ------WNSPQ---ALNNWGLALQ 262
                   +PQ        GL   
Sbjct: 129 KSLEMTAKAPQLHAEAYKQGLGGS 152

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 89.9 bits (224), Expect = 8e-21
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 25/166 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +  A++ NP+D +ALY  A    +                 +  A +         
Sbjct: 24  ALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVART 69

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P     +   + A     +     +  +   +QA    + A ++N          GL   
Sbjct: 70  PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L               A +  + A+ L+ D       L  +   +
Sbjct: 130 LLGER----------DKAEASLKQALALE-DTPEIRSALAELYLSM 164

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 25/166 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +     + R P         +                      LE+A     +A R+ 
Sbjct: 58  ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY---LEQALSVLKDAERVN 114

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P          +  +      G   +AE        + ++A+ L  ++P+  +       
Sbjct: 115 PRYAPLHLQRGLVYALL----GERDKAEA-------SLKQALALE-DTPEIRSALAELYL 162

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            +  +    ++      A++++  A++             + L   
Sbjct: 163 SMGRL----DE------ALAQYAKALEQAPKDLDLRVRYASALLLK 198

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 26/155 (16%)

Query: 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214
                      + L                    + A   ++ A +  P   +A Y  A 
Sbjct: 2   QTAEQNPLRLGVQLYALGR--------------YDAALTLFERALKENPQDPEALYWLAR 47

Query: 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK- 273
                    G    A E       N +  V               A   L      RE+ 
Sbjct: 48  TQLK----LGLVNPALE-------NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG 96

Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +  +  A+S  + A ++   +       G V   L
Sbjct: 97  KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  A+E +     A Y    V                     +EA   +++A R  
Sbjct: 76  ALAFYDKALELDSSAATAYYGAGNVYVVKEM--------------YKEAKDMFEKALRAG 121

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               D FY     +        + K A           ++AV+LN N  +A   +G+ L 
Sbjct: 122 MENGDLFYMLGTVLVKL----EQPKLALP-------YLQRAVELNENDTEARFQFGMCLA 170

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                      +     A+S+F A  +       A YN G      
Sbjct: 171 NEG-----MLDE-----ALSQFAAVTEQDPGHADAFYNAGVTYAYK 206

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 82.2 bits (204), Expect = 6e-18
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +  A+    E+ D  Y    VL +                  + A      A  L 
Sbjct: 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------------PKLALPYLQRAVELN 155

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               +A + + + +++     G   EA          +    + +     A  N G+   
Sbjct: 156 ENDTEARFQFGMCLANE----GMLDEALS-------QFAAVTEQDPGHADAFYNAGVTYA 204

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                    EK      A+     AI +Q D   A++    + +  
Sbjct: 205 YKENR----EK------ALEMLDKAIDIQPDHMLALHAKKLLGHHH 240

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 31/166 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +   + ++    P                                 E+A + + +A    
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGD----------YEKAAEAFTKAIEEN 53

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                 + N+A  +S         + A          Y+KA++L+ ++  A    G    
Sbjct: 54  KEDAIPYINFANLLSSV----NELERALA-------FYDKALELDSSAATAYYGAGNVYV 102

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                     K+     A   F  A++   +     Y LGTVL  L
Sbjct: 103 VKE-----MYKE-----AKDMFEKALRAGMENGDLFYMLGTVLVKL 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           +  +   +  ++ L P               R    G  ++A E        + KA++ N
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAE-------AFTKAIEEN 53

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
                   N+   L  ++ +    E+      A++ +  A++L      A Y  G V   
Sbjct: 54  KEDAIPYINFANLLSSVNEL----ER------ALAFYDKALELDSSAATAYYGAGNVYVV 103

Query: 308 L 308
            
Sbjct: 104 K 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 84.8 bits (211), Expect = 2e-19
 Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A        + +  D D   +  +   ++                ++   +  + +    
Sbjct: 27  AVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADA 72

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P          +          +   A            K  + N  +       G+AL 
Sbjct: 73  PDNVKVATVLGLTYVQV----QKYDLAVP-------LLIKVAEANPINFNVRFRLGVALD 121

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L       ++      AI  F+ A+ L+ +  +    +      +
Sbjct: 122 NLGRF----DE------AIDSFKIALGLRPNEGKVHRAIAFSYEQM 157

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.5 bits (179), Expect = 5e-15
 Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 35/159 (22%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             +    ++   P++        L   +                  + A     +     
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQK--------------YDLAVPLLIKVAEAN 106

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +  +   +A+ +     GR  EA +       +++ A+ L  N  +       + +
Sbjct: 107 PINFNVRFRLGVALDNL----GRFDEAID-------SFKIALGLRPNEGKVHRAIAFSYE 155

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
           ++       E+      A+  F+ A +L       +  +
Sbjct: 156 QMGRH----EE------ALPHFKKANELDEGASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 21/121 (17%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
             +A    ++         D   +  IA        G      E         E+++   
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTE-------LLERSLADA 72

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
            ++ +     GL   ++       +       A+       +         + LG  L  
Sbjct: 73  PDNVKVATVLGLTYVQVQKY----DL------AVPLLIKVAEANPINFNVRFRLGVALDN 122

Query: 308 L 308
           L
Sbjct: 123 L 123

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 28/120 (23%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A        E NP +++  +   + L                    +EA   +  A  L 
Sbjct: 95  AVPLLIKVAEANPINFNVRFRLGVALDNLGR--------------FDEAIDSFKIALGLR 140

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P         A +        GR +EA         +++KA +L+     A     L  +
Sbjct: 141 PNEGKVHRAIAFSYEQM----GRHEEALP-------HFKKANELD---EGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282
           +G +      + QA    E+    +        + G+A  +  A+    ++         
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV----DR------GTE 63

Query: 283 KFRAAIQLQFDFHRAIYNLGTVLYGL 308
               ++    D  +    LG     +
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQV 89

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 87.2 bits (217), Expect = 7e-19
 Identities = 36/166 (21%), Positives = 49/166 (29%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AIE  P    A  N   V     +              +  A   +++A  L 
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGE--------------IWLAIHHFEKAVTLD 199

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   DA+ N    + +          A          Y +A+ L+ N      N      
Sbjct: 200 PNFLDAYINLGNVLKEA----RIFDRAVA-------AYLRALSLSPNHAVVHGNLACVYY 248

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           E   I            AI  +R AI+LQ  F  A  NL   L   
Sbjct: 249 EQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.5 bits (210), Expect = 6e-18
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  A+  +P       N A V  E                 ++ A   Y  A  L 
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------------IDLAIDTYRRAIELQ 267

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   DA+ N A A+ ++    G   EAE+        Y  A++L      +LNN     +
Sbjct: 268 PHFPDAYCNLANALKEK----GSVAEAED-------CYNTALRLCPTHADSLNNLANIKR 316

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           E         ++     A+  +R A+++  +F  A  NL +VL   
Sbjct: 317 EQG-----NIEE-----AVRLYRKALEVFPEFAAAHSNLASVLQQQ 352

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.7 bits (208), Expect = 1e-17
 Identities = 39/166 (23%), Positives = 57/166 (34%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y +A+   P+  D   N A  L  + D              +E A + Y  A +  
Sbjct: 86  AIEHYRHALRLKPDFIDGYINLAAALVAAGD--------------MEGAVQAYVSALQYN 131

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P L+    +    +       GR +EA+         Y KA++   N   A +N G    
Sbjct: 132 PDLYCVRSDLGNLLKAL----GRLEEAKA-------CYLKAIETQPNFAVAWSNLGCVFN 180

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
               I            AI  F  A+ L  +F  A  NLG VL   
Sbjct: 181 AQGEI----------WLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.0 bits (201), Expect = 9e-17
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AIE  P   DA  N A  L+E                 + EA   Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  D+  N A    ++    G  +EA          Y KA+++      A +N    LQ
Sbjct: 302 PTHADSLNNLANIKREQ----GNIEEAVR-------LYRKALEVFPEFAAAHSNLASVLQ 350

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +   +          + A+  ++ AI++   F  A  N+G  L  +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +       + P++   L   + +  +                 L+ +      A +  
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P L +A+ N            G   +     ++A ++Y  A++L  +      N   AL 
Sbjct: 64  PLLAEAYSN-----------LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                     +      A+  + +A+Q   D +    +LG +L  L
Sbjct: 113 AAG-----DMEG-----AVQAYVSALQYNPDLYCVRSDLGNLLKAL 148

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 21/121 (17%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
            E A +   +  R  P         +           R   +             A++ N
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
               +A +N G   +E   +          + AI  +R A++L+ DF     NL   L  
Sbjct: 64  PLLAEAYSNLGNVYKERGQL----------QEAIEHYRHALRLKPDFIDGYINLAAALVA 113

Query: 308 L 308
            
Sbjct: 114 A 114

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 85.4 bits (211), Expect = 5e-18
 Identities = 25/205 (12%), Positives = 56/205 (27%), Gaps = 28/205 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +  A+E+ P++ +     A+      +               + A     +A RL 
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAIDPLRQAIRLN 205

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P         A+ +    +      E E+L        E+A++        L +     +
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKL-------VEEALEKAPGVTDVLRSAAKFYR 258

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322
                    +K      AI   + A++   +       +G          +         
Sbjct: 259 RKDEP----DK------AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308

Query: 323 EVSPNELYSQSAIYIAAAHALKPSY 347
           +    EL   +  ++  A     + 
Sbjct: 309 KRKLLELIGHAVAHLKKADEANDNL 333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 22/175 (12%), Positives = 43/175 (24%), Gaps = 35/175 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             K    A+E+ P   D L + A   +   +               ++A +   +A    
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--------------PDKAIELLKKALEYI 277

Query: 203 PTLHDAFYNWAIA--------ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
           P                    ++ R       ++  EL   A  + +KA + N N  +  
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337

Query: 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI---YNLGTVLY 306
           +                E+      A   F+     +             G    
Sbjct: 338 SILASLHALADQY----EE------AEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 37/202 (18%)

Query: 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205
           +  +A +          N+A V                    L +     D+   +C   
Sbjct: 82  QQEHADQAEIRSLVTWGNYAWVYYHMGR--------------LSDVQIYVDKVKHVCEKF 127

Query: 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265
               Y       D  +   R K      ++A   +EKA++    +P+  +   +A   L 
Sbjct: 128 SSP-YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL- 185

Query: 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS 325
                 +     + AI   R AI+L  D       L   L+ + E+              
Sbjct: 186 ------DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE-------------- 225

Query: 326 PNELYSQSAIYIAAAHALKPSY 347
             E   +    +  A    P  
Sbjct: 226 -GEEEGEGEKLVEEALEKAPGV 246

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 41/183 (22%)

Query: 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196
             ++  A      A E N   +      A +   +                 EEA   + 
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ--------------YEEAEYYFQ 358

Query: 197 EATRLCPT---LHDAFYNW-------------AIAISDRA-KMRGRTKEAEELWKQATKN 239
           +      T          +             AI       K+  +++E E++  +  K 
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299
            +  +  N    +AL+      +        + +Q     A       ++       A  
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELN-----EKMQQ-----ADEDSERGLESGSLIPSASS 468

Query: 300 NLG 302
             G
Sbjct: 469 WNG 471

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 21/170 (12%), Positives = 41/170 (24%), Gaps = 35/170 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             + Y + +            +  +L +                    A ++Y  A    
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQ--------------DSLAIQQYQAAVDRD 104

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
            T  D +              G     +  +  A +  EK ++     P+     G A  
Sbjct: 105 TTRLDMYGQ-----------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
                     K      A S F   ++L+ + +               DT
Sbjct: 154 YNKEY----VK------ADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 21/168 (12%), Positives = 34/168 (20%), Gaps = 32/168 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + +     +           A+   E A             A   +  + Y       
Sbjct: 22  AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY---------DLAQ--KDIETYFSKVNAT 70

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                 F              G+    +     A + Y+ AV  +          G    
Sbjct: 71  KAKSADFEY-----------YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
                            AI      I+      +  Y LG   Y   E
Sbjct: 120 NKG-----NFPL-----AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 26/164 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +     I     D    Y        + +                +A   + +   L 
Sbjct: 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE--------------YVKADSSFVKVLELK 172

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK-NYEKAVQLNWNSPQALNNWGLAL 261
           P ++  +   A A + +     +   A+  +++  +       +      +A        
Sbjct: 173 PNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
                    R+K      A + ++  + L     +AI  L   L
Sbjct: 232 TIN------RDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 32/150 (21%)

Query: 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218
           D  + +A  L ++ +                EA + +++           +   A+   +
Sbjct: 4   DVEFRYADFLFKNNN--------------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49

Query: 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278
                 +   A++      + Y   V            +G  L +       ++      
Sbjct: 50  ----LAKYDLAQK----DIETYFSKVNATKAKSADFEYYGKILMKK-----GQDSL---- 92

Query: 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            AI +++AA+            +G+  Y  
Sbjct: 93  -AIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 16/123 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +   +E  P  Y      A        +                A   Y++   +C
Sbjct: 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG-----------LAKPYYEKLIEVC 209

Query: 203 PTLHDAFY-NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
                 +      A    A      ++  +    A   ++  + L+  + +A++   + L
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265

Query: 262 QEL 264
           +  
Sbjct: 266 EHH 268

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 78.5 bits (194), Expect = 9e-17
 Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 32/166 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A     +A++ +P++  A    A + Q                   ++A + + +A  + 
Sbjct: 27  ATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIK 72

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +   N+   +  R     R  E+   + +A  +             A  N G+   
Sbjct: 73  PDSAEINNNYGWFLCGRL---NRPAESMAYFDKALAD-----PTYPTPYIANLNKGICSA 124

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +       +        A +  + ++  Q  F  A   L       
Sbjct: 125 KQ-----GQFGL-----AEAYLKRSLAAQPQFPPAFKELARTKMLA 160

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 22/171 (12%), Positives = 44/171 (25%), Gaps = 36/171 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 200
           A + +  A+   P+  +   N+   L    +                E+   +D+A    
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRLNR-------------PAESMAYFDKALADP 107

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
             PT + A  N  I     +  +G+   AE          ++++      P A       
Sbjct: 108 TYPTPYIANLNKGIC----SAKQGQFGLAEA-------YLKRSLAAQPQFPPAFKELART 156

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
                 +  A             F+               LG  +     +
Sbjct: 157 KMLAGQLGDADY----------YFKKYQSRVEVLQADDLLLGWKIAKALGN 197

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 36/159 (22%)

Query: 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211
           E+  +  +     A+      D                +A    ++A +  P    A+  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQD--------------YRQATASIEDALKSDPKNELAWLV 47

Query: 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271
            A       +      +A+E       ++ +A+ +  +S +  NN+G  L         R
Sbjct: 48  RAEIY----QYLKVNDKAQE-------SFRQALSIKPDSAEINNNYGWFLCGRL----NR 92

Query: 272 EKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL 308
             +     +++ F  A+        + A  N G      
Sbjct: 93  PAE-----SMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 36/156 (23%)

Query: 154 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212
           +P +  +A YN      +  D               +EA + Y +A  L P   +A+YN 
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49

Query: 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272
             A   +    G   EA E        Y+KA++L+ N+ +A  N G A  +        +
Sbjct: 50  GNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGDY----D 94

Query: 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +      AI  ++ A++L  +   A  NLG      
Sbjct: 95  E------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 25/122 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E +P + +A YN      +  D               +EA + Y +A  L 
Sbjct: 28  AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +A+YN   A       +G   EA E        Y+KA++L+ N+ +A  N G A Q
Sbjct: 74  PNNAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQ 122

Query: 263 EL 264
           + 
Sbjct: 123 KQ 124

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   ++ A+     +  +L N ++VL++   +     +       + ++ ++   A ++ 
Sbjct: 156 AHTCFSGALTHCK-NKVSLQNLSMVLRQLQTD-----SGDEHSRHVMDSVRQAKLAVQMD 209

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGL 259
                ++Y    A        G+  +     +QA   Y +A +++    ++P    N   
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRAT 266

Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
             +   +             A+  F  A  L   +         +L  L
Sbjct: 267 LHKYEESY----------GEALEGFSQAAALDPAWPEPQQREQQLLEFL 305

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 76.2 bits (187), Expect = 6e-15
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 26/175 (14%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             ++    +     +  AL      L  + D                EA     +A +L 
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPD-------------YSPEAEVLLSKAVKLE 133

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P L +A+         +    G    A          +  A+    N   +L N  + L+
Sbjct: 134 PELVEAWNQLGEVYWKK----GDVTSAHT-------CFSGALTHCKNKV-SLQNLSMVLR 181

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317
           +L       E    V  ++ + + A+Q+     R+ Y LG     L  +T +   
Sbjct: 182 QLQTD-SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 23/203 (11%)

Query: 110 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169
           H  +         + S+TG  + GR          +   + +++     D LY +     
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSMMA--DEEEEAKHVLQKLQGLVDRLYCFRDSYF 65

Query: 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229
           E+                +E+  ++ +E          A      A++        + EA
Sbjct: 66  ETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD---YSPEA 122

Query: 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289
           E           KAV+L     +A N  G    +                A + F  A+ 
Sbjct: 123 EV-------LLSKAVKLEPELVEAWNQLGEVYWKK-----GDVTS-----AHTCFSGALT 165

Query: 290 LQFDFHRAIYNLGTVLYGLAEDT 312
              +   ++ NL  VL  L  D+
Sbjct: 166 HCKN-KVSLQNLSMVLRQLQTDS 187

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 26/166 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A K +  A E +PE+       A +                     ++    + EA R  
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENK--------------FDDCETLFSEAKRKF 368

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +                      +  + +A K Y+ A++L              + 
Sbjct: 369 PEAPEVPNF-----------FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           + + +      +  +  A +    A +L     +A   L  +    
Sbjct: 418 KATLLTRNPTVENFIE-ATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 36/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +    AIE  P   ++    AL++ +  D                E    +D+A +L 
Sbjct: 256 AHEDIKKAIELFP-RVNSYIYMALIMADRND--------------STEYYNYFDKALKLD 300

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                 +Y+           RG+     + + QA K+++KA +L+  +            
Sbjct: 301 SNNSSVYYH-----------RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
             +      +         + F  A +   +          +L   
Sbjct: 350 RENKF----DD------CETLFSEAKRKFPEAPEVPNFFAEILTDK 385

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 26/160 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
               ++ A  + PE  +    +A +L +  D               ++A K+YD A  L 
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKND--------------FDKALKQYDLAIELE 402

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
             L   +   A  +     +        E + +AT   EKA +L+  S QA         
Sbjct: 403 NKLDGIYVGIAPLVGKATLLT--RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302
           +         +   +  AI+ F  +  L       +  + 
Sbjct: 461 QQ--------ED--IDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A K+Y  AIE   +        A ++ ++     L      ++    EA    ++A++L 
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKAT---LLTRNPTVEN--FIEATNLLEKASKLD 445

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A                + K  +E   +A   +E++  L     + L     A  
Sbjct: 446 PRSEQAKIG-----------LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494

Query: 263 E 263
            
Sbjct: 495 A 495

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 26/111 (23%)

Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
             +   AL +       +                 ++A K Y+ A  L       + N  
Sbjct: 2   KDKYALALKDKGNQFFRNKK--------------YDDAIKYYNWALELKED-PVFYSN-- 44

Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
                          +    K+  +   KA++L  +  + L     A + L
Sbjct: 45  ---------LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 18/167 (10%), Positives = 41/167 (24%), Gaps = 13/167 (7%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A     E            ++          S       E     YDE+    
Sbjct: 129 KFGDIDTATATPTELSTQPAK-ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187

Query: 203 PTLHDAFYNWAIAISDRAKMRGRT-KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
             L +   N      +       +  +A  L+++      +  +L      +L + G+  
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
              +              A    + AI+L    + +   +  ++   
Sbjct: 248 FLKNDP----------LGAHEDIKKAIELFPRVN-SYIYMALIMADR 283

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 27/193 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQE-----------SADNVSLDSTSPSKDALL--- 188
             +    A+E  P+    L   A   +            S  +++ D    S + +L   
Sbjct: 58  VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117

Query: 189 ---------EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--AT 237
                    +E     D AT     L            +             ++K     
Sbjct: 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177

Query: 238 KNYEKAVQLNWNSPQALNNWGLALQE--LSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295
            NY+++ + +      L+N      E    A     +   +    + K     +L+    
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237

Query: 296 RAIYNLGTVLYGL 308
            ++ + G   +  
Sbjct: 238 ISLEHTGIFKFLK 250

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A      A + +P    A    A +  +  D              ++EA   ++E+  L 
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQED--------------IDEAITLFEESADLA 479

Query: 203 PTLHDAFYNWAIAISDRAKMR 223
            T+ +       A + + + R
Sbjct: 480 RTMEEKLQAITFAEAAKVQQR 500

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 27/168 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  AI ++P D +A     +   E+ +               + A         L 
Sbjct: 84  TILFMEAAILQDPGDAEAWQFLGITQAENEN--------------EQAAIVALQRCLELQ 129

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A                 +       + A +  +  ++ N      + N   +  
Sbjct: 130 PNNLKALMA-----------LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI--YNLGTVLYGL 308
               +  +    +++      +  A     D         LG + +  
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 27/168 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +   N I++NP+    + N       +       S SP   ++LE   + Y EA    
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM----SKSPVDSSVLEGVKELYLEAAHQN 207

Query: 203 PTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
             + D        +         G    A +        +  A+ +        N  G  
Sbjct: 208 GDMIDPDLQTGLGVLFHLS----GEFNRAID-------AFNAALTVRPEDYSLWNRLGAT 256

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           L         R ++     A+  +  A+++Q  F R+ YNLG     L
Sbjct: 257 LANGD-----RSEE-----AVEAYTRALEIQPGFIRSRYNLGISCINL 294

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 143 AAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200
             + Y  A  +N +  D D      ++   S +                 A   ++ A  
Sbjct: 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--------------FNRAIDAFNAALT 241

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
           + P  +  +      +++      R++EA E        Y +A+++     ++  N G++
Sbjct: 242 VRPEDYSLWNRLGATLANG----DRSEEAVE-------AYTRALEIQPGFIRSRYNLGIS 290

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320
              L A           R A+S F  A+ LQ             + G     LR   ++ 
Sbjct: 291 CINLGAY----------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340

Query: 321 PREVSPNELYSQSAIYIAAAHALKP 345
            +              +  A  L P
Sbjct: 341 DQPELFQAANLGDLDVLLRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 30/234 (12%), Positives = 57/234 (24%), Gaps = 40/234 (17%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A     +  E   +        A     S +  + +         +  + K Y   T   
Sbjct: 8   AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQN------QVTVSASEKGYYFHTENP 61

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                  +   +         G                E A+  +    +A    G+   
Sbjct: 62  FKDWPGAFEEGLKRLKE----GDLPVTILF-------MEAAILQDPGDAEAWQFLGITQA 110

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGG 317
           E        E+      AI   +  ++LQ +  +A+  L            A + L+   
Sbjct: 111 ENE-----NEQA-----AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160

Query: 318 TVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYL 371
             NP+      L             +  S    S    +        YL+A + 
Sbjct: 161 KQNPKYK---YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL-----YLEAAHQ 206

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 22/167 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 201
           A       +   P+             +  D                 E       A  +
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167

Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
            P       +            G        +  A  N  +AV+L  +  Q  N  G  L
Sbjct: 168 NPNDAQLHAS-----------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
              +     R ++     A+  +  A+ +   + R +YN+      +
Sbjct: 217 ANGN-----RPQE-----ALDAYNRALDINPGYVRVMYNMAVSYSNM 253

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 35/172 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A+E NP D     +  ++   S +               + A      A  L 
Sbjct: 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNN--------------YDSAAANLRRAVELR 202

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P     +      +++      R +EA +        Y +A+ +N    + + N  ++  
Sbjct: 203 PDDAQLWNKLGATLANG----NRPQEALD-------AYNRALDINPGYVRVMYNMAVSYS 251

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314
            +S              A  +   AI +Q                   D  R
Sbjct: 252 NMSQY----------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 30/171 (17%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           AA  +    +  PE  +A  +  L   E+                   A    + A  L 
Sbjct: 40  AALAFEAVCQAAPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 85

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P                      +   E     A  +    +       Q  +    A  
Sbjct: 86  PKDIAVHAA-----------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134

Query: 263 ELSAIVPAREKQTIVRT-----AISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           ++  +    E              +   AA+++  +  +   +LG +    
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 18/177 (10%), Positives = 43/177 (24%), Gaps = 35/177 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
               Y          ++      L + + A+              L EA   ++   +  
Sbjct: 6   NNTDYPFEANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQAA 51

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +A+ +            G T+   E    A      A  L+           ++  
Sbjct: 52  PEREEAWRS-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319
                            A++  RA +  Q  + +           + +  +++    
Sbjct: 101 NEHNA----------NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 26/132 (19%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           + +    Y          H+      +++           EA          +E   Q  
Sbjct: 3   MLQNNTDYPFEANNPYMYHENPMEEGLSMLKL----ANLAEAAL-------AFEAVCQAA 51

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
               +A  + GL   E       ++       AI     A  L          L      
Sbjct: 52  PEREEAWRSLGLTQAENE-----KDGL-----AIIALNHARMLDPKDIAVHAALAVSHTN 101

Query: 308 L-----AEDTLR 314
                 A  +LR
Sbjct: 102 EHNANAALASLR 113

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 33/166 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A      A+E +P   DA    A+V Q   +               + A ++Y +A    
Sbjct: 56  AKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASD 101

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                   N+   + +    + R +EA +   +A+++      L     +   N GL   
Sbjct: 102 SRNARVLNNYGGFLYE----QKRYEEAYQRLLEASQD-----TLYPERSRVFENLGLVSL 152

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           ++        +      A   F  +++L  +       +  +LY  
Sbjct: 153 QMKKP----AQ------AKEYFEKSLRLNRNQPSVALEMADLLYKE 188

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 38/222 (17%), Positives = 64/222 (28%), Gaps = 52/222 (23%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             +      +   E  DA     L   +  +               E+A     +A  + 
Sbjct: 22  GDQNPLKTDKGRDEARDAYIQLGLGYLQRGN--------------TEQAKVPLRKALEID 67

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P+  DA    A+            K A+E        Y KA+  +  + + LNN+G  L 
Sbjct: 68  PSSADAHAALAVVFQT----EMEPKLADE-------EYRKALASDSRNARVLNNYGGFLY 116

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL-----AEDTLRT 315
           E       R ++     A  +   A Q     +  R   NLG V   +     A++    
Sbjct: 117 EQK-----RYEE-----AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166

Query: 316 GGTVNPREVSP-NEL---------YSQSAIYIAAAHALKPSY 347
              +N  + S   E+         Y  +  Y           
Sbjct: 167 SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 37/168 (22%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 200
           A + Y  A+  +  +   L N+   L E                  EEA ++  EA++  
Sbjct: 90  ADEEYRKALASDSRNARVLNNYGGFLYEQKR--------------YEEAYQRLLEASQDT 135

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
           L P     F N  +     +    +  +A+E        +EK+++LN N P         
Sbjct: 136 LYPERSRVFENLGLV----SLQMKKPAQAKE-------YFEKSLRLNRNQPSVALEMADL 184

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           L +    VPAR+           +    Q      R++     +    
Sbjct: 185 LYKEREYVPARQ----------YYDLFAQGGGQNARSLLLGIRLAKVF 222

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 38/155 (24%)

Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
               +   ++  LV + S                     +   +  +      DA+    
Sbjct: 2   GSSHHHHHHSSGLVPRGS-----------------HMGDQNPLKTDKGRDEARDAYIQLG 44

Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
           +    R    G T++A+           KA++++ +S  A     +  Q           
Sbjct: 45  LGYLQR----GNTEQAKV-------PLRKALEIDPSSADAHAALAVVFQTEMEP------ 87

Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
               + A  ++R A+       R + N G  LY  
Sbjct: 88  ----KLADEEYRKALASDSRNARVLNNYGGFLYEQ 118

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)

Query: 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294
              +N  K  +    +  A    GL   +                A    R A+++    
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNT----------EQAKVPLRKALEIDPSS 70

Query: 295 HRAIYNLGTVLYGLAE 310
             A   L  V     E
Sbjct: 71  ADAHAALAVVFQTEME 86

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 272

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +               K+A E  ++      +A  L      A+ + G   Q
Sbjct: 273 PQQVVAIAS-----------NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L            V+  +     A  L      AI +       L
Sbjct: 322 ALET----------VQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 35/162 (21%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
              A    P+   A+ +     Q                  ++       +A  L P   
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLTPEQV 378

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
            A  +            G  K+A E  ++      +A  L      A+ +     Q L  
Sbjct: 379 VAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                     V+  +     A  L      AI + G     L
Sbjct: 428 ----------VQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL 459

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    PE   A+ +     Q                  ++       +A  L 
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALET--------------VQALLPVLCQAHGLT 170

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +            G  K+A E  ++      +A  L      A+ + G   Q
Sbjct: 171 PEQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L            V+  +     A  L      AI + G     L
Sbjct: 220 ALET----------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 35/177 (19%)

Query: 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191
              + + +  +        +   PE   A+ +     Q                  ++  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALET--------------VQRL 91

Query: 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251
                +A  L P    A  +               K+A E  ++      +A  L     
Sbjct: 92  LPVLCQAHGLTPQQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPEQV 140

Query: 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            A+ +     Q L            V+  +     A  L  +   AI + G     L
Sbjct: 141 VAIASHDGGKQALET----------VQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 36/161 (22%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    PE   A+ +     Q                  ++       +A  L 
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 408

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +               K+A E  ++      +A  L      A+ + G    
Sbjct: 409 PEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-AIYNLG 302
            L +I             +S+   A+    + H  A+  LG
Sbjct: 458 ALESI----------VAQLSRPDPALAALTNDHLVALACLG 488

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 35/176 (19%)

Query: 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192
            R+ + +LT A +     ++ +      +     V               + +A+     
Sbjct: 13  ARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT--------------AVEAVHAWRN 58

Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
                   L P    A  +               K+A E  ++      +A  L      
Sbjct: 59  ALTGAPLNLTPEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           A+ +     Q L            V+  +     A  L  +   AI +       L
Sbjct: 108 AIASHDGGKQALET----------VQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 153

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 18/124 (14%), Positives = 27/124 (21%), Gaps = 21/124 (16%)

Query: 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245
           ALL  A +      +L                     RG     E +           + 
Sbjct: 18  ALLTVAGELRGPPLQLDTGQLLKIAK-----------RGGVTAVEAVHAWRNALTGAPLN 66

Query: 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           L      A+ +     Q L            V+  +     A  L      AI +     
Sbjct: 67  LTPEQVVAIASHDGGKQALET----------VQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 306 YGLA 309
             L 
Sbjct: 117 QALE 120

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 36/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                   IE         +  A +L +  +               E+  KK +    + 
Sbjct: 91  KLGDLKKTIEYYQ-KSLTEHRTADILTKLRN--------------AEKELKKAEAEAYVN 135

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +                G+    +  W  A K Y + ++      +  +N   AL 
Sbjct: 136 PEKAEEARL-----------EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +L +             AI+    AI+   +F RA     T    +
Sbjct: 185 KLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 21/160 (13%), Positives = 37/160 (23%), Gaps = 35/160 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             K+       NPE  +            +D                 A K Y E  +  
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRA 169

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P     + N           R         + +A  +  KA++ + N  +A      A  
Sbjct: 170 PEDARGYSN-----------RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302
            +               A+    AA     + +       
Sbjct: 219 AVKEY----AS------ALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 15/168 (8%), Positives = 30/168 (17%), Gaps = 36/168 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A     +A+E+  E        +       +                       +     
Sbjct: 57  AISTLNDAVEQGREMRADYKVISKSFARIGN--------------AYHKLGDLKKTIEYY 102

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                  +                       ++  K  E    +N    +     G    
Sbjct: 103 QK-SLTEHR-----------TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
             S              A+  +   I+   +  R   N    L  L  
Sbjct: 151 TKSDW----PN------AVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 25/124 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A K Y   I+R PED     N A  L +                   EA    ++A    
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------------FPEAIADCNKAIEKD 203

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A+             +   + A + +  A +  + A   +       +   +   
Sbjct: 204 PNFVRAYIR-----------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252

Query: 263 ELSA 266
              A
Sbjct: 253 YYKA 256

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 14/154 (9%), Positives = 33/154 (21%), Gaps = 37/154 (24%)

Query: 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214
               D          ++                 +EA + Y++A  L         N   
Sbjct: 2   GSMADKEKAEGNKFYKARQ--------------FDEAIEHYNKAWELHKD-ITYLNN--- 43

Query: 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274
                   R   +  +  ++ A      AV+              +   +          
Sbjct: 44  --------RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN-------- 87

Query: 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                 +   +  I+  +      +    +L  L
Sbjct: 88  --AYHKLGDLKKTIEY-YQKSLTEHRTADILTKL 118

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                 + ++R+PE         +                     + EA + + +++ + 
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--------------ISEARRYFSKSSTMD 403

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A+                +   E    QA   Y  A +L   +       G+   
Sbjct: 404 PQFGPAWIG-----------FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +L  I            A    +++  L       +  LG V +  
Sbjct: 453 QLGNI----------LLANEYLQSSYALFQYDPLLLNELGVVAFNK 488

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 24/222 (10%), Positives = 50/222 (22%), Gaps = 50/222 (22%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
            A+ Y ++I    +  D L   A  L   +                 +      +   + 
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSR--------------FIDVLAITTKILEID 335

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   D +     +        G   +   +           V  +          G+   
Sbjct: 336 PYNLDVYPLHLAS----LHESGEKNKLYLI-------SNDLVDRHPEKAVTWLAVGIYYL 384

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGG 317
            ++ I     +      A   F  +  +   F  A                A     T  
Sbjct: 385 CVNKI----SE------ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 318 TVNPREVSP-----NELYSQS----AI-YIAAAHALKPSYSV 349
            +      P      +         A  Y+ +++AL     +
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 28/162 (17%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
           Y  A       +       +   +  +              +  A +    +  L     
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGN--------------ILLANEYLQSSYALFQYDP 475

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
                  +     A  +   + A   ++ A    +K             N G A ++L  
Sbjct: 476 LLLNELGVV----AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK- 530

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                        AI      + L  +       +  V    
Sbjct: 531 ----MYDA-----AIDALNQGLLLSTNDANVHTAIALVYLHK 563

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)

Query: 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199
           +  A +   ++      D   L    +V    +D              ++ A   +  A 
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--------------MQTAINHFQNAL 502

Query: 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259
            L          WA   ++     G      +++  A     + + L+ N         L
Sbjct: 503 LLVKKTQSNEKPWAATWANL----GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558

Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
                               AI+    ++ +  +   A   L   L
Sbjct: 559 VYLHKKIP----------GLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 40/289 (13%), Positives = 84/289 (29%), Gaps = 31/289 (10%)

Query: 46  QTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQ 105
           QT+ +  ST      P +                       L+ L       + + + + 
Sbjct: 7   QTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTD 66

Query: 106 GNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILT--FAAKRYANAIERNPEDYDAL-- 161
           G+   +   QN  ++   + +     +   +Q+     F  ++    I  NP D   L  
Sbjct: 67  GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEK-VLDITGNPNDAFWLAQ 125

Query: 162 -------YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-------- 206
                  Y  A  L    D  +  S      A        +  A  L    +        
Sbjct: 126 VYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN 185

Query: 207 -DAFYNWAIAISDRAKM---RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
            +        I   A M   RG+       + +A + Y++A+ ++    +A +     L 
Sbjct: 186 ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ----LV 241

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
               +    E   +++     +    +    F R++Y L        ++
Sbjct: 242 SNHLLTADEEWDLVLKLN---YSTYSKEDAAFLRSLYMLKLNKTSHEDE 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSL-DSTSPSKDALLEEACKKYDEATRL 201
           A +   + +   P     +         +    S     S   D+L  E  + +  A RL
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210

Query: 202 CPTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259
            PT  D        +       + G   +A +        +  A+ +  N     N  G 
Sbjct: 211 DPTSIDPDVQCGLGVLF----NLSGEYDKAVD-------CFTAALSVRPNDYLLWNKLGA 259

Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L   +     + ++     A++ +R A++LQ  + R+ YNLG     L
Sbjct: 260 TLANGN-----QSEE-----AVAAYRRALELQPGYIRSRYNLGISCINL 298

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 38/175 (21%)

Query: 143 AAKRYANAIERNPEDYDA--LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200
             + +  A+  +P   D        ++   S +               ++A   +  A  
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--------------YDKAVDCFTAALS 245

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
           + P  +  +      +++      +++EA          Y +A++L     ++  N G++
Sbjct: 246 VRPNDYLLWNKLGATLANG----NQSEEAVA-------AYRRALELQPGYIRSRYNLGIS 294

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315
              L A    RE       A+  F  A+ +Q          G  +      TLR 
Sbjct: 295 CINLGAH---RE-------AVEHFLEALNMQRKSRGPRGEGG-AMSENIWSTLRL 338

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 32/177 (18%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--- 203
           +  A      D D        L+E A         P      +     YD+  +      
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKR--DAEAHPWLSDYDDLTSATYDKGYQFEEENP 60

Query: 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
              H   +   +         G    A  L       +E AVQ +    +A    G    
Sbjct: 61  LRDHPQPFEEGLRRLQ----EGDLPNAVLL-------FEAAVQQDPKHMEAWQYLGTTQA 109

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLR 314
           E       +E       AIS  R  ++L+ D   A+  L            A + LR
Sbjct: 110 ENE-----QELL-----AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 41/217 (18%)

Query: 143 AAKRYANA---IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-------LEEAC 192
            AKR A A   +    +   A Y+     +E  +N   D   P ++ L       L  A 
Sbjct: 27  MAKRDAEAHPWLSDYDDLTSATYDKGYQFEE--ENPLRDHPQPFEEGLRRLQEGDLPNAV 84

Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
             ++ A +  P   +A+              G T+   E    A     + ++L  ++  
Sbjct: 85  LLFEAAVQQDPKHMEAWQY-----------LGTTQAENEQELLAISALRRCLELKPDNQT 133

Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
           AL    ++    S      ++Q     A    R  ++    +   +        G     
Sbjct: 134 ALMALAVSFTNES-----LQRQ-----ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 313 LRTGGTVNPREVSPNELYSQSAI--YIAAAHALKPSY 347
            +        +    E         ++AA   L P+ 
Sbjct: 184 SKRILGSLLSDSLFLE-----VKELFLAAV-RLDPTS 214

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 35/150 (23%)

Query: 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218
           +A YN      +  D               +EA + Y +A  L P   +A+YN   A   
Sbjct: 2   EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47

Query: 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278
           +    G   EA E        Y+KA++L+  S +A  N G A  +        ++     
Sbjct: 48  Q----GDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYYKQGDY----DE----- 87

Query: 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            AI  ++ A++L      A YNLG   Y  
Sbjct: 88  -AIEYYQKALELDPRSAEAWYNLGNAYYKQ 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 35/148 (23%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E +P   +A YN      +  D               +EA + Y +A  L 
Sbjct: 20  AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 65

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +A+YN   A       +G   EA E        Y+KA++L+  S +A  N G A  
Sbjct: 66  PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYY 114

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQL 290
           +        ++      AI  ++ A++L
Sbjct: 115 KQGDY----DE------AIEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E +P   +A YN      +  D               +EA + Y +A  L 
Sbjct: 54  AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 99

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250
           P   +A+YN   A       +G   EA E        Y+KA++L+  S
Sbjct: 100 PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRS 136

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +   +     + P   +    +A +L +  D               + A K+YD A RL 
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGD--------------FDTAIKQYDIAKRLE 408

Query: 203 PTLHDAFYNWAIAIS-----DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
                        I       R   +  T+  EE +  A K   KA +L+  S QA    
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468

Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314
                ++  I    ++      AI  F  +  L       +           +  LR
Sbjct: 469 AQLKLQMEKI----DE------AIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 36/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A      +I  +P   ++    AL L +  +               +E  K + +A  L 
Sbjct: 262 AQVLLQESINLHP-TPNSYIFLALTLADKEN--------------SQEFFKFFQKAVDLN 306

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P     +Y+           RG+     + +K A ++++KA  LN  +          L 
Sbjct: 307 PEYPPTYYH-----------RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +         +      + + F                   +L   
Sbjct: 356 KQGKF----TE------SEAFFNETKLKFPTLPEVPTFFAEILTDR 391

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 29/122 (23%)

Query: 147 YANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
            A     +P         L N       + +                EA K Y  A  L 
Sbjct: 10  IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKN--------------FNEAIKYYQYAIELD 55

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P     + N                 +    ++  +   KA+++  +  +AL     A +
Sbjct: 56  PNEPVFYSN-----------ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

Query: 263 EL 264
            L
Sbjct: 105 SL 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 24/142 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEACKKYDEATR 200
           A K+Y  A                ++ ++       S  P++        A K   +A  
Sbjct: 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK------------------NYEK 242
           L P    A    A           +  EA EL++ +                      +K
Sbjct: 457 LDPRSEQAKIGLAQLKLQM----EKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512

Query: 243 AVQLNWNSPQALNNWGLALQEL 264
            ++ +      +       +  
Sbjct: 513 RLRADPIISAKMELTLARYRAK 534

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
                    +   L P+   A+        +         EA +        Y+ A++L+
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-------YYQYAIELD 55

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
            N P   +N          +    EK       I     A++++ D  +A+    +    
Sbjct: 56  PNEPVFYSNISACYISTGDL----EK------VIEFTTKALEIKPDHSKALLRRASANES 105

Query: 308 L 308
           L
Sbjct: 106 L 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 26/166 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
            +K      +  P +      + +          L+ +S +  +  + A     +A +  
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSH------LEVSSVNTSSNYDTAYALLSDALQRL 203

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
            +  D  Y  A              ++ +++            L  N+  AL   G+   
Sbjct: 204 YSATDEGYLVA---------NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
             + +            A    + +I L      +   L   L   
Sbjct: 255 LKNNL----------LDAQVLLQESINLHPT-PNSYIFLALTLADK 289

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 43/229 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A K Y  AIE +P +     N +     + D              LE+  +   +A  + 
Sbjct: 44  AIKYYQYAIELDPNEPVFYSNISACYISTGD--------------LEKVIEFTTKALEIK 89

Query: 203 PTLHDAFYNWAI----------AISD----------------RAKMRGRTKEAEELWKQA 236
           P    A    A           A+ D                    R   K+A ++  + 
Sbjct: 90  PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149

Query: 237 -TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295
            +K+  +  Q+  ++    + +G+    L  +            A +    A+Q  +   
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLE-VSSVNTSSNYDT-AYALLSDALQRLYSAT 207

Query: 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344
              Y +   L   + D   +  + N  +    E  + +  Y    H LK
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 28/170 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A       I    +   A      +L +                 L+EA   + +  +  
Sbjct: 56  ALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------------LDEAEDDFKKVLKSN 101

Query: 203 PTLHDAFYNWAIAI----SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
           P+  +     +  +      R + +         +  A    +K +++     +      
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161

Query: 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
               +          +   R AIS  +AA +L+ D   A Y + T+ Y L
Sbjct: 162 ECFIKE--------GE--PRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 30/171 (17%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A  ++  A++ +P++Y A Y  A V                     + A     +   L 
Sbjct: 22  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGK--------------SKAALPDLTKVIALK 67

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                A              RG     +    +A  +++K ++ N +  +        ++
Sbjct: 68  MDFTAARLQ-----------RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116

Query: 263 ELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                                 AI+     +++                  
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 29/167 (17%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
              A +   ++ +A Y  + +  +  D               E +  +  E  +L     
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 222

Query: 207 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 261
             F ++      ++          +  +  AT  YE  ++   +  +    +        
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            +         +      AI      +Q++ D   A+ +        
Sbjct: 283 SKDEKP----VE------AIRICSEVLQMEPDNVNALKDRAEAYLIE 319

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 22/163 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 201
           A   +   ++ NP + +     + +++             + D      A    D+   +
Sbjct: 90  AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149

Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
           C    +               R      E   ++A  + + A +L  ++ +A        
Sbjct: 150 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304
            +L       E       ++S+ R  ++L  D  R   +   V
Sbjct: 199 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A       +E    D +     A    +  +                +A      A++L 
Sbjct: 139 AITFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 184

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               +AFY                       + +     + ++L+ +  +   ++    +
Sbjct: 185 SDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233

Query: 263 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGL 308
               I  A E  +      A SK+ + ++ +        R+   +       
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 27/170 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +       ++ + +      ++  V + +    S +           +A  KY+   +  
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 264

Query: 203 PTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
           P++ +    +                     +E   +A +   + +Q+  ++  AL +  
Sbjct: 265 PSVAEYTVRSKER-----------ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313

Query: 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            A           ++      AI  + AA +   +  +    L      L
Sbjct: 314 EAYLIEEMY----DE------AIQDYEAAQEHNENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 35/149 (23%)

Query: 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216
           D +        L  +                L +A  ++  A    P  + A+Y      
Sbjct: 2   DVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDPDNYIAYYR----- 42

Query: 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
                 R     A    K A  +  K + L  +   A    G  L +   +    ++   
Sbjct: 43  ------RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL----DE--- 89

Query: 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
              A   F+  ++              ++
Sbjct: 90  ---AEDDFKKVLKSNPSEQEEKEAESQLV 115

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280
              G+   A      A   +  AV  + ++  A          +      + K      A
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-----KSKA-----A 56

Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGGTVNP 321
           +      I L+ DF  A    G +L        AED  +     NP
Sbjct: 57  LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 39/252 (15%), Positives = 61/252 (24%), Gaps = 51/252 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
              +   A+   P+D+ A    A       D                           L 
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALH 53

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   +A              + R  EA  L        ++A       P      G AL+
Sbjct: 54  PGHPEAVARLGRVR----WTQQRHAEAAVL-------LQQASDAAPEHPGIALWLGHALE 102

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT--------LR 314
           +                A + +  A QL  +       L      L +          +R
Sbjct: 103 DAGQA----------EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152

Query: 315 TGGTVNPREVSPNELYSQSA-----IYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAG 369
                    V P    S+ A     +  A   A   + SV   A   VR       L+ G
Sbjct: 153 AAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVR---SKGPLRVG 209

Query: 370 YLTAPPAGIPVA 381
           +++      P  
Sbjct: 210 FVSNGFGAHPTG 221

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 10/87 (11%), Positives = 16/87 (18%), Gaps = 17/87 (19%)

Query: 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281
           M                    AV+       A      A   +                 
Sbjct: 1   MTADGPRELLQ-------LRAAVRHRPQDFVAWLMLADAELGMGDT----------TAGE 43

Query: 282 SKFRAAIQLQFDFHRAIYNLGTVLYGL 308
              +  + L      A+  LG V +  
Sbjct: 44  MAVQRGLALHPGHPEAVARLGRVRWTQ 70

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 7e-14
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 34/192 (17%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQ---------ESADNV-SLDSTSP---------- 182
           A  ++  A++ +P++Y A Y  A V                V  L               
Sbjct: 45  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104

Query: 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS----DRAKMRGRTKEAEELWKQATK 238
            K   L+EA   + +  +  P+ ++     +  I      R + +         +  A  
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164

Query: 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298
             +K +++     +          +          +   R AIS  +AA +L+ D   A 
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIKE--------GE--PRKAISDLKAASKLKNDNTEAF 214

Query: 299 YNLGTVLYGLAE 310
           Y + T+ Y L +
Sbjct: 215 YKISTLYYQLGD 226

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 29/167 (17%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
              A +   ++ +A Y  + +  +  D               E +  +  E  +L     
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 245

Query: 207 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 261
             F ++      ++          +  +  AT  YE  ++   +  +    +        
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            +                AI      +Q++ D   A+ +        
Sbjct: 306 SKDEKP----------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A       +E    D +     A    +  +                +A      A++L 
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 207

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               +AFY                       + +     + ++L+ +  +   ++    +
Sbjct: 208 NDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 263 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDFH----RAIYNLGTVLYGL 308
               I  A E  +      A SK+ + ++ +        R+   +       
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 35/162 (21%)

Query: 144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP 203
                N   ++  D +        L  +                L +A  ++  A    P
Sbjct: 12  DLGTENLYFQSMADVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDP 57

Query: 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263
             + A+Y            R     A    K A  +  K +QL  +   A    G  L +
Sbjct: 58  DNYIAYYR-----------RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106

Query: 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
              +    ++      A   F+  ++     +        ++
Sbjct: 107 QGKL----DE------AEDDFKKVLKSNPSENEEKEAQSQLI 138

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 22/163 (13%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS-TSPSKDALLEEACKKYDEATRL 201
           A   +   ++ NP + +     + +++            +         A    D+   +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
           C    +               R      E   ++A  + + A +L  ++ +A        
Sbjct: 173 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221

Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304
            +L       E       ++S+ R  ++L  D  R   +   V
Sbjct: 222 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 19/166 (11%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +       ++ + +      ++  V + +    S +           +A  KY+   +  
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 287

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P++ +       +              +E   +A +   + +Q+  ++  AL +   A  
Sbjct: 288 PSIAEY---TVRSKE----RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                    E       AI  +  A +   +  +    L      L
Sbjct: 341 IE-------EMYD---EAIQDYETAQEHNENDQQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 37/172 (21%)

Query: 143 AAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198
           A  +Y + ++  P        +         +                   EA +   E 
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--------------PVEAIRVCSEV 321

Query: 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
            ++ P   +A  +           R      EE++ +A ++YE A + N N  Q      
Sbjct: 322 LQMEPDNVNALKD-----------RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 259 LALQELSAIVPAR-------EKQTIVRTAISKFR-AAIQLQFDFHRAIYNLG 302
            A + L              ++    +  I  +R  A+Q   D  +      
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 27/156 (17%)

Query: 206 HDAFYNWAIAISDRAKMRGRTKEAEEL------------WKQATKNYEKAVQLNWNSPQA 253
           H   ++  + +           + E+                A   +  AV  + ++  A
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62

Query: 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL----- 308
                     +      + K      A+      IQL+ DF  A    G +L        
Sbjct: 63  YYRRATVFLAMG-----KSKA-----ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112

Query: 309 AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344
           AED  +     NP E    E  SQ            
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 51/192 (26%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   ++ A+   P+  +      + L ++ +               + A + +D    L 
Sbjct: 62  ARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELD 107

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT + A  N  IA+       GR K A++       +     Q + N P       LA Q
Sbjct: 108 PTYNYAHLNRGIALYYG----GRDKLAQD-------DLLAFYQDDPNDPFRSLWLYLAEQ 156

Query: 263 ELS---AIVPARE-----------------------KQTIVRTAISKFRAAIQLQFDFHR 296
           +L    A    ++                       +QT++    +       L      
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216

Query: 297 AIYNLGTVLYGL 308
             + LG     L
Sbjct: 217 TNFYLGKYYLSL 228

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 35/165 (21%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
            A+    + E    LY   ++                       A   + +A  + P + 
Sbjct: 32  LASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMP 77

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
           + F    I ++      G    A E        ++  ++L+     A  N G+AL     
Sbjct: 78  EVFNYLGIYLTQA----GNFDAAYE-------AFDSVLELDPTYNYAHLNRGIALYYGGR 126

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
                      + A     A  Q   +       L      L E 
Sbjct: 127 D----------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 25/125 (20%)

Query: 188 LEEACKKYDEA----TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243
            E    + ++                Y            RG   ++  L   A  ++ +A
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYE-----------RGVLYDSLGLRALARNDFSQA 69

Query: 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303
           + +  + P+  N  G+ L +        +       A   F + ++L   ++ A  N G 
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNF----DA------AYEAFDSVLELDPTYNYAHLNRGI 119

Query: 304 VLYGL 308
            LY  
Sbjct: 120 ALYYG 124

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 20/169 (11%), Positives = 40/169 (23%), Gaps = 33/169 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A        + +P D        L  Q+      LD          ++A +   +     
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQK------LD---------EKQAKEVLKQHFEKS 174

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                 +              G   E + L ++   +      L  +  +     G    
Sbjct: 175 DKEQWGWNIVEFY-------LGNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
            L  +           +A + F+ A+                L  L +D
Sbjct: 227 SLGDL----------DSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 13/86 (15%)

Query: 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282
             + +      +Q           +    Q L   G+    L               A +
Sbjct: 18  TLQQEVILARMEQI---LASRALTDDERAQLLYERGVLYDSLGLR----------ALARN 64

Query: 283 KFRAAIQLQFDFHRAIYNLGTVLYGL 308
            F  A+ ++ D       LG  L   
Sbjct: 65  DFSQALAIRPDMPEVFNYLGIYLTQA 90

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 9/101 (8%), Positives = 21/101 (20%), Gaps = 18/101 (17%)

Query: 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194
           S Q ++        +         +  +          D              L+ A   
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD--------------LDSATAL 237

Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235
           +  A               + +S      G+ ++      Q
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSL----LGQDQDDLAESDQ 274

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 30/174 (17%)

Query: 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199
              A + ++ A+   PED   ++   +V  ++ +               + A K + +A 
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--------------WKTAEKWFLDAL 220

Query: 200 RLCPTLHDAFY--NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
                + +      W   +++     G      + + +A   + +A+ L   +    +  
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNL----GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276

Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
           G     +               A+  F  A+ L+ D   ++  LG  +     D
Sbjct: 277 GYIHSLMGNF----------ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 44/175 (25%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +  + A         A   +       ++               ++A   Y  A +L 
Sbjct: 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESE--------------HDQAMAAYFTAAQLM 155

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
              H                 G         K A + + +A+ +    P  ++  G+   
Sbjct: 156 KGCHLPMLY-----------IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQL---------QFDFHRAIYNLGTVLYGL 308
           +              +TA   F  A++             +   + NLG V   L
Sbjct: 205 QNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 39/184 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             K  +  +E++P     L      L E                   E      +   L 
Sbjct: 41  CYKLTSVVMEKDPFHASCLPVHIGTLVELNK--------------ANELFYLSHKLVDLY 86

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P+   +++                       + A +   KA  L      A   +G +  
Sbjct: 87  PSNPVSWFAVGCYYLMVGH----------KNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRTGG 317
             S      ++      A++ +  A QL    H  +  +G          LAE       
Sbjct: 137 VESEH----DQ------AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186

Query: 318 TVNP 321
           ++ P
Sbjct: 187 SIAP 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 28/171 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-----LEEACKKYDE 197
           A   +   I  N +  +  Y   +   +    +S    +    A       ++A   Y E
Sbjct: 23  AVSYFRQTIALNIDRTEMYYWTNV---DKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
             +  P   D     A         RG+ K+A          YEK +QL  ++  A    
Sbjct: 80  LLQKAPNNVDCLEACAEM----QVCRGQEKDALR-------MYEKILQLEADNLAANIFL 128

Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           G      +     +EK+      +      +        A Y  G      
Sbjct: 129 GNYYYLTA----EQEKK-----KLETDYKKLSSPTKMQYARYRDGLSKLFT 170

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 35/168 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y   +++ P + D L   A +                     ++A + Y++  +L 
Sbjct: 73  AYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--------------EKDALRMYEKILQLE 118

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                A           A          E  K+  +   K +        A    GL+  
Sbjct: 119 ADNLAANIFLGNYYYLTA----------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
             +      EK      A +  +  I        A   L  +L    E
Sbjct: 169 FTTRY----EK------ARNSLQKVILRFPS-TEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 29/161 (18%)

Query: 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215
           +  D +        E+                  +A   + +   L     + +Y   + 
Sbjct: 2   QSVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVD 47

Query: 216 ISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270
            +     +         +    + +A   Y++ +Q   N+   L                
Sbjct: 48  KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE--- 104

Query: 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
                  + A+  +   +QL+ D   A   LG   Y  AE 
Sbjct: 105 -------KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 69.8 bits (170), Expect = 8e-13
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 35/163 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E  PE   A  N A VLQ+                 L+EA   Y EA R+ 
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  DA+ N    + +               + A + Y +A+Q+N     A +N     +
Sbjct: 74  PTFADAYSNMGNTLKEMQD-----------VQGALQCYTRAIQINPAFADAHSNLASIHK 122

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
           +   I            AI+ +R A++L+ DF  A  NL   L
Sbjct: 123 DSGNI----------PEAIASYRTALKLKPDFPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.8 bits (162), Expect = 8e-12
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
            P   D+L N A + +E  +              +EEA + Y +A  + P    A  N A
Sbjct: 5   CPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLA 50

Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
             +      +G+ +EA         +Y++A++++     A +N G  L+E+  +      
Sbjct: 51  SVLQQ----QGKLQEALM-------HYKEAIRISPTFADAYSNMGNTLKEMQDV------ 93

Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRTGGTVNP 321
               + A+  +  AIQ+   F  A  NL ++         A  + RT   + P
Sbjct: 94  ----QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
            CPT  D+  N A       + +G  +EA  L       Y KA+++      A +N    
Sbjct: 4   SCPTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASV 52

Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRT 315
           LQ+   +          + A+  ++ AI++   F  A  N+G  L        A      
Sbjct: 53  LQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102

Query: 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356
              +NP      + +S  A     +  +  + + Y +AL+L
Sbjct: 103 AIQINPAFA---DAHSNLASIHKDSGNIPEAIASYRTALKL 140

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 25/122 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AI  +P   DA  N    L+E  D              ++ A + Y  A ++ 
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------------VQGALQCYTRAIQIN 107

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P   DA  N A       K  G   EA         +Y  A++L  + P A  N    LQ
Sbjct: 108 PAFADAHSNLASIH----KDSGNIPEAIA-------SYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 263 EL 264
            +
Sbjct: 157 IV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 31/163 (19%)

Query: 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171
           +      A    N    + E        +  A + Y  AI+ NP   DA  N A + ++S
Sbjct: 70  IRISPTFADAYSNMGNTLKEMQD-----VQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231
            +              + EA   Y  A +L P   DA+ N A  +               
Sbjct: 125 GN--------------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---------- 160

Query: 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274
            W    +  +K V +  +  +  N         S + P     
Sbjct: 161 -WTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGF 201

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 42/211 (19%)

Query: 142 FAAKRYANAIER----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197
              K +  A++             +N   +     +              + EA K +  
Sbjct: 17  ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKN--------------MTEAEKAFTR 62

Query: 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNN 256
           +      L  A++            RG      E +  A K+ ++A+ QL  N       
Sbjct: 63  SINRDKHLAVAYFQ-----------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111

Query: 257 WGLALQELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
            GL  +  +  V         K+   + A  +   A  ++ +   +  +        A +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID-------KAME 164

Query: 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342
            +       P  +    L+  +   +A    
Sbjct: 165 CVWKQKLYEPVVIPVGRLFRPNERQVAQLAK 195

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 62.1 bits (151), Expect = 8e-12
 Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 38/167 (22%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
            A     + +  + LY       ++                 ++A K +     L     
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDA 52

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
             F              G  +++  L++QA ++Y     ++ N P+   +      +L  
Sbjct: 53  RYFLG-----------LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG- 100

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAE 310
                        A S F +A  L              G +L  +  
Sbjct: 101 ----DLDG-----AESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 33/172 (19%)

Query: 104 SQGNTPHQLAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDAL 161
           S G T   L   +   +E + ++ G +  + G+        A K +      +  D    
Sbjct: 2   SDGGTLAMLRGLSEDTLEQLYAL-GFNQYQAGKWDD-----AQKIFQALCMLDHYDARYF 55

Query: 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221
                  Q                   E+A + Y     +        ++ A        
Sbjct: 56  LGLGACRQSLGL--------------YEQALQSYSYGALMDINEPRFPFHAAECH----L 97

Query: 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
             G    AE         +  A  L    P        A   L A+   +++
Sbjct: 98  QLGDLDGAES-------GFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 25/166 (15%), Positives = 42/166 (25%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 290

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +            G  K+A E  ++      +A  L  +   A+ +     Q
Sbjct: 291 PDQVVAIAS-----------HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L            V+  +     A  L  D   AI + G     L
Sbjct: 340 ALET----------VQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 22/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A         A+ +     Q                  ++       +A  L 
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 629

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +               K+A E  ++      +A  L  +   A+ + G   Q
Sbjct: 630 PAQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 678

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L            V+  +     A  L  +   AI +       L
Sbjct: 679 ALET----------VQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEAC 192
              +++  A +    A+E      +AL    L L   A  V++ S +  K AL  ++   
Sbjct: 154 DTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT-PAQVVAIASNNGGKQALETVQRLL 212

Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
               +A  L P    A  +               K+A E  ++      +A  L  +   
Sbjct: 213 PVLCQAHGLTPAQVVAIAS-----------HDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309
           A+ +     Q L            V+  +     A  L  D   AI + G     L 
Sbjct: 262 AIASNIGGKQALET----------VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 561

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +            G  K+A E  ++      +A  L      A+ +     Q
Sbjct: 562 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ 610

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            L            V+  +     A  L      AI +       L
Sbjct: 611 AL----------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 22/167 (13%), Positives = 39/167 (23%), Gaps = 35/167 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 652 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 697

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                A  +               K+A E  ++      +A  L  +   A+ + G   Q
Sbjct: 698 QEQVVAIAS-----------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309
            L            V+  +     A  L      AI +       L 
Sbjct: 747 ALET----------VQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 8e-08
 Identities = 23/188 (12%), Positives = 42/188 (22%), Gaps = 46/188 (24%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 347 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 392

Query: 203 PTLHDAFYNW-----------AIAISDRA-----------KMRGRTKEAEELWKQATKNY 240
           P    A  +             + +  +A                 K+A E  ++     
Sbjct: 393 PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452

Query: 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300
            +   L      A+ +     Q L            V+  +     A  L  D   AI +
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQALET----------VQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 301 LGTVLYGL 308
                  L
Sbjct: 503 NIGGKQAL 510

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 9e-08
 Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 36/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
                  A    P+   A+ +     Q                  ++       +A  L 
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLT 358

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A  +            G  K+A E  ++      +A  L  +   A+ + G    
Sbjct: 359 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG---- 403

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                   ++    V+  +     A  L  D   AI +       L
Sbjct: 404 -------GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 154 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212
           +P +  +A YN      +  D               +EA + Y +A  L P   +A+YN 
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49

Query: 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
             A       +G   EA E        Y+KA++L+ N+ +A  N G A Q+ 
Sbjct: 50  GNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 54.7 bits (133), Expect = 8e-10
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
           +A+YN   A   +    G   EA E        Y+KA++L+ N+ +A  N G A  +   
Sbjct: 10  EAWYNLGNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGD 58

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                ++      AI  ++ A++L  +   A  NLG      
Sbjct: 59  Y----DE------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A + Y  A+E +P + +A YN      +  D               +EA + Y +A  L 
Sbjct: 28  AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73

Query: 203 PTLHDAFYNWAIAISD 218
           P   +A  N   A   
Sbjct: 74  PNNAEAKQNLGNAKQK 89

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 16/146 (10%), Positives = 42/146 (28%), Gaps = 39/146 (26%)

Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
             ++ +  Y   ++  ++ +                E+   +++A +L P     +    
Sbjct: 2   VDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKG 47

Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAIVPAR 271
            A+ +      R +EA +        Y   + +  +            AL+ +      +
Sbjct: 48  KALYN----LERYEEAVD-------CYNYVINVIEDEYNKDVWAAKADALRYIE----GK 92

Query: 272 EKQTIVRTAISKFRAAIQLQ--FDFH 295
           E             A  +L+     H
Sbjct: 93  EV------EAEIAEARAKLEHHHHHH 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 25/105 (23%)

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
           + +Y   +   D     G   E+ +        +EKA+QL+    +     G AL  L  
Sbjct: 7   EEYYLEGVLQYDA----GNYTESID-------LFEKAIQLDPEESKYWLMKGKALYNLE- 54

Query: 267 IVPAR-EKQTIVRTAISKFRAAIQLQFDFHR--AIYNLGTVLYGL 308
               R E+      A+  +   I +  D +           L  +
Sbjct: 55  ----RYEE------AVDCYNYVINVIEDEYNKDVWAAKADALRYI 89

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 27/107 (25%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +   +  AI+ +PE+          L                    EEA   Y+    + 
Sbjct: 25  SIDLFEKAIQLDPEESKYWLMKGKALYNLER--------------YEEAVDCYNYVINVI 70

Query: 203 P--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
                 D +   A A+          +   E         E   +L 
Sbjct: 71  EDEYNKDVWAAKADALRY----IEGKEVEAE-------IAEARAKLE 106

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 25/122 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +     +      +  D +Y++A                      +EEA   +       
Sbjct: 21  SGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYD 66

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               D                    + +E ++QA   Y  A  L  N    + + G    
Sbjct: 67  FYNVDYIMGL-----------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115

Query: 263 EL 264
            L
Sbjct: 116 RL 117

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 30/150 (20%)

Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
             +   +   + D  Y++A         +GR +EAE         +      ++ +   +
Sbjct: 25  LKDINAIPDDMMDDIYSYAYD----FYNKGRIEEAEVF-------FRFLCIYDFYNVDYI 73

Query: 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----A 309
                  Q               + A   +  A  L  + +  +++ G     L     A
Sbjct: 74  MGLAAIYQIKEQF----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123

Query: 310 EDTLRTGGTVNPREVSPNELYSQSAIYIAA 339
           ++        +  E    +L  ++  Y+ A
Sbjct: 124 KECFELVIQHSNDE----KLKIKAQSYLDA 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 57/386 (14%), Positives = 103/386 (26%), Gaps = 123/386 (31%)

Query: 68  LNPALRK----DEGNRTFTMRELLTELKSEGEDSVTDASFSQ--GNTPHQLAEQNNAAME 121
           L+ A       D  + T T  E+   L              +     P  L  +      
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVK-SL------------LLKYLDCRPQDLPREVLTTNP 327

Query: 122 LINSVTG-VDEEGRSR-QRILTFAAKRYANAIER-----NPEDYDALYNWAL-VLQESAD 173
              S+      +G +           +    IE       P +Y  ++   L V   SA 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSA- 385

Query: 174 NVS--------LDSTSPSKDALLEEACKK------YDEATRLCPTLHDAFYNWAIAISDR 219
           ++          D        ++ +  K         E+T    ++        I +  +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIPS------IYLELK 436

Query: 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE------------LSAI 267
            K+         L +    +Y        N P+  ++  L                L  I
Sbjct: 437 VKLENEY----ALHRSIVDHY--------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRA-IYNLGTVLYGLAE--DTLRTGGTVNPREV 324
                        ++ FR  + L F F    I +  T         +TL+          
Sbjct: 485 EHPER--------MTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--------- 526

Query: 325 SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHS 384
              + Y     YI       P Y       RLV ++L        +L      +  + ++
Sbjct: 527 --LKFYKP---YICDND---PKYE------RLVNAIL-------DFLPKIEENLICSKYT 565

Query: 385 DWKRSQFVLNHEG---LQQASKNEQK 407
           D    +  L  E     ++A K  Q+
Sbjct: 566 DL--LRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 57/385 (14%), Positives = 96/385 (24%), Gaps = 118/385 (30%)

Query: 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDAFYNWAI 214
           E+ D +         S D VS          L      K +E   +    +    Y +  
Sbjct: 49  EEIDHIIM-------SKDAVS------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93

Query: 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274
            +    K   R           T+ Y +     +N  Q    +          V   +  
Sbjct: 94  -LMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYN---------VSRLQPY 137

Query: 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG--------LAEDTLRTGGTV--NPREV 324
             +R A+ + R                  ++ G        +A D   +         ++
Sbjct: 138 LKLRQALLELRP-------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 325 ---------SPNE-------LYSQ--SAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYL 366
                    SP         L  Q        + H+      ++S    L R +   PY 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243

Query: 367 KAGYLTAPPAGIPVAPHS----D--WKRSQFVLNHEGLQQASK----NEQKQVTRSLSG- 415
                           +                N   L    K       KQVT  LS  
Sbjct: 244 ---------------ENCLLVLLNVQNAK--AWNAFNLS--CKILLTTRFKQVTDFLSAA 284

Query: 416 RTGDFSPDRRAIRIEVPDIVSVSA----CADLTLPPGAGLCIETIHGPVFLVADSWEALD 471
            T   S D  ++ +   ++ S+      C    LP        T + P   ++   E++ 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--L--TTN-P-RRLSIIAESIR 338

Query: 472 GWLDAIRLVYTIYARGKADVLAGII 496
             L         +     D L  II
Sbjct: 339 DGLA--TWDN--WKHVNCDKLTTII 359

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 14/132 (10%), Positives = 25/132 (18%), Gaps = 25/132 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +      +  D           Q                   + A   Y     + 
Sbjct: 40  AHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------------YDLAIHSYSYGAVMD 85

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
                  ++                       +A      A +L  N P+          
Sbjct: 86  IXEPRFPFH-----------AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 263 ELSAIVPAREKQ 274
            L AI   +E +
Sbjct: 135 MLEAIKLKKEMK 146

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/119 (8%), Positives = 25/119 (21%), Gaps = 21/119 (17%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           L            +     +  Y+               +     ++ A   ++    L+
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYS-----------LAFNQYQSGXYEDAHXVFQALCVLD 51

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306
               +     G   Q +               AI  +     +     R  ++    L 
Sbjct: 52  HYDSRFFLGLGACRQAMGQY----------DLAIHSYSYGAVMDIXEPRFPFHAAECLL 100

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AIE NP +     N A    +  +                 A +  + A  + 
Sbjct: 31  AVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------AGAVQDCERAICID 76

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P    A+              G    +     +A   Y+KA++L+ ++    +N  +A  
Sbjct: 77  PAYSKAYGR-----------MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 263 EL 264
           +L
Sbjct: 126 KL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 21/122 (17%)

Query: 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248
           E A   Y +A  L P     F N           R         +  A ++ E+A+ ++ 
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCN-----------RAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
              +A    GLAL  L+              A++ ++ A++L  D      NL      L
Sbjct: 78  AYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKL 127

Query: 309 AE 310
            E
Sbjct: 128 RE 129

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 23/122 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             +R    + +  ++    +       E                  + A      A    
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFD 49

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT   A+      +      +G    A + W+        A   +    Q +    + L+
Sbjct: 50  PTYSVAWKWLGKTLQG----QGDRAGARQAWESGL-----AAAQSRGDQQVVKELQVFLR 100

Query: 263 EL 264
            L
Sbjct: 101 RL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 19/124 (15%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           ++   ++ +             +      ++      +   A         +   A+  +
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEH----EQFDAALP-------HLRAALDFD 49

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
                A    G  LQ       AR+      + +     A        + +  L   L  
Sbjct: 50  PTYSVAWKWLGKTLQGQGDRAGARQ---AWESGL-----AAAQSRGDQQVVKELQVFLRR 101

Query: 308 LAED 311
           LA +
Sbjct: 102 LARE 105

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 27/116 (23%)

Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
           +PED    Y  A    +  +                 A   ++E     P     +Y+  
Sbjct: 3   DPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLG 48

Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAI 267
                      RT +A +        Y + +++     + + L+    A  +   +
Sbjct: 49  KLYER----LDRTDDAID-------TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 15/159 (9%), Positives = 45/159 (28%), Gaps = 29/159 (18%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
               IE  P++Y   ++  ++++   D                +  +   +        +
Sbjct: 155 ITAIIEEQPKNYQVWHHRRVLVEWLRD--------------PSQELEFIADILNQDAKNY 200

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
            A+ +           R    +  +LW    +  ++ ++ +  +    N     +     
Sbjct: 201 HAWQH-----------RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT-- 247

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
                  + ++   +      I+L      A   L  +L
Sbjct: 248 --TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 22/197 (11%), Positives = 48/197 (24%), Gaps = 43/197 (21%)

Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
             +AIE N  +Y   +   ++L+                  L E            P  +
Sbjct: 120 TRDAIELNAANYTVWHFRRVLLKS-------------LQKDLHEEMNYITAIIEEQPKNY 166

Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
             +++           R    E      Q  +     +  +  +  A  +    +QE   
Sbjct: 167 QVWHH-----------RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK- 214

Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326
                    +    +      ++     +        V+              N R V  
Sbjct: 215 ---------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT--------TGYNDRAVLE 257

Query: 327 NEL-YSQSAIYIAAAHA 342
            E+ Y+   I +   + 
Sbjct: 258 REVQYTLEMIKLVPHNE 274

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 15/94 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +   Y  A++   E+ +     A VL   A              +  +     D+A  L 
Sbjct: 63  SLLAYRQALQLRGENAELYAALATVLYYQASQ-----------HMTAQTRAMIDKALALD 111

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236
                A    A      A M+    +A ELW++ 
Sbjct: 112 SNEITALMLLASD----AFMQANYAQAIELWQKV 141

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             +   + I  NP++ +             D                 +   Y +A +L 
Sbjct: 29  QLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLR 74

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               + +   A  +  +A  +  T +   +        +KA+ L+ N   AL        
Sbjct: 75  GENAELYAALATVLYYQAS-QHMTAQTRAM-------IDKALALDSNEITALMLLASDAF 126

Query: 263 EL 264
             
Sbjct: 127 MQ 128

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 18/125 (14%)

Query: 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241
            +     E   +   +  R  P   + +            + G     +  +  +   Y 
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWA-----------LLGEYYLWQNDYSNSLLAYR 68

Query: 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
           +A+QL   + +        L   +        Q +     +    A+ L  +   A+  L
Sbjct: 69  QALQLRGENAELYAALATVLYYQA-------SQHMTAQTRAMIDKALALDSNEITALMLL 121

Query: 302 GTVLY 306
            +  +
Sbjct: 122 ASDAF 126

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 36/145 (24%)

Query: 152 ERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210
             NP   ++      L + + A+              L EA   ++   +  P   +A+ 
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWR 55

Query: 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270
           +            G T+   E    A      A  L+           ++          
Sbjct: 56  S-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN---- 100

Query: 271 REKQTIVRTAISKFRAAIQLQFDFH 295
                    A++  RA +  Q  + 
Sbjct: 101 ------ANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 25/105 (23%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           AA  +    ++ PE  +A  +  L   E+                   A    + A  L 
Sbjct: 36  AALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 81

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           P         A++ ++           E     A  +    +   
Sbjct: 82  PKDIAVHAALAVSHTN-----------EHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
            +     G +        +A   +E   Q      +A  + GL   E       ++    
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----KDGL-- 69

Query: 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGGTVNPR 322
              AI     A  L          L            A  +LR      P+
Sbjct: 70  ---AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 20/88 (22%)

Query: 224 GRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTA 280
           G   +A          YEKA+          +     G   + L        ++     A
Sbjct: 4   GLEAQAVPY-------YEKAIASGLQGKDLAECYLGLGSTFRTL-----GEYRK-----A 46

Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
            +     ++   +          VLY L
Sbjct: 47  EAVLANGVKQFPNHQALRVFYAMVLYNL 74

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 20/112 (17%)

Query: 188 LEEACKKYDEATRLC---PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244
             +A   Y++A         L + +              G  ++AE +           V
Sbjct: 6   EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----GEYRKAEAV-------LANGV 54

Query: 245 QLNWNSPQALNNWGLALQELSAIVPARE--KQTIVRT----AISKFRAAIQL 290
           +   N       + + L  L       E   + I  T     I  ++ AI  
Sbjct: 55  KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 19/114 (16%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AIE +P +     N A V  E                   E  +  ++A  + 
Sbjct: 27  AHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------------FAECVQFCEKAVEVG 72

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256
                 +   A A+S R    G   + +     A + + +++      P+ +  
Sbjct: 73  RETRADYKLIAKAMS-R---AGNAFQKQNDLSLAVQWFHRSLSEF-RDPELVKK 121

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A K Y  A E +P +   + N A V  E  D                +  +  ++A  + 
Sbjct: 23  ALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVG 68

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
               + +   A A +      G +   EE +K A   Y K++  +  +P  L     A +
Sbjct: 69  RENREDYRQIAKAYA----RIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQAEK 123

Query: 263 EL 264
            L
Sbjct: 124 IL 125

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 188 LEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246
           +E A +  +E  +  P   D A+Y             G        W++A  NY+ A++L
Sbjct: 16  IENALQALEEFLQTEPVGKDEAYYL-----------MGNAYRKLGDWQKALNNYQSAIEL 64

Query: 247 NWNSPQALNNWGL 259
           N +SP       +
Sbjct: 65  NPDSPALQARKMV 77

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 364 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPD 423
             ++ G+L    + +       WKR+ F L  +G      +E  Q              D
Sbjct: 7   GLVRGGWLWRQSSIL-----RRWKRNWFALWLDGTLGYYHDETAQDEE-----------D 50

Query: 424 RRAIRIEVPDIVSVSACADLTLPPGAG----LCIETIHGPVF-LVADSWEALDGWLDAIR 478
           R  I   V DI     C D+  P G      L +    G    L A++ +    W  A+ 
Sbjct: 51  RVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALM 110

Query: 479 LVYTIYARGKADVLAGIITG 498
              +  A   A V +G  +G
Sbjct: 111 EANSTPAPAGATVPSGPSSG 130

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 12/128 (9%)

Query: 366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGR--------- 416
           +                  ++K+  F+L    L     + ++    S  G          
Sbjct: 4   ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCV 63

Query: 417 ---TGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGW 473
                + +P          +  S      +         +    GP+++ + + E    W
Sbjct: 64  ETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRW 123

Query: 474 LDAIRLVY 481
           +  ++ V 
Sbjct: 124 IHQLKNVI 131

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 19/124 (15%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
           L+ A K+  +               A A    A    + ++A  +       +++     
Sbjct: 146 LDLARKELKKMQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYI-------FQEMADKC 196

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
             +   LN                        A    + A+         + NL  +   
Sbjct: 197 SPTLLLLNGQAACHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 308 LAED 311
           L + 
Sbjct: 247 LGKP 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	498
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.78
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.77
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.68
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.68
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.64
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.63
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.6
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.59
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.59
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.59
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.58
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.52
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.5
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.49
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.49
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.42
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.37
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.33
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.24
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.16
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.08
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.02
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.93
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.92
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.86
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.63
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.61
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.52
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.47
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.38
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.92
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.76
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.73
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.4
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	97.34
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.26
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.21
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.13
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.1
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.09
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.09
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.05
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	96.98
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.88
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	96.85
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	96.82
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	96.79
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	96.78
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	96.65
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.65
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	96.6
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	96.49
2d9v_A	130	Pleckstrin homology domain-containing protein fami	96.48
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	96.34
2dkp_A	128	Pleckstrin homology domain-containing family A mem	96.33
2yry_A	122	Pleckstrin homology domain-containing family A mem	96.3
2d9y_A	117	Pleckstrin homology domain-containing protein fami	96.24
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	96.22
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	96.16
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	96.15
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	96.1
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	96.07
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	96.07
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	96.07
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	95.98
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	95.9
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	95.84
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	95.78
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	95.72
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	95.72
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	95.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.65
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	95.62
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	95.53
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	95.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.47
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.44
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	95.36
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	95.34
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	95.32
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	95.31
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	95.3
3cxb_B	112	Pleckstrin homology domain-containing family M mem	95.3
1wi1_A	126	Calcium-dependent activator protein for secretion,	95.3
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	95.29
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	95.18
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	95.1
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	95.08
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.03
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	94.98
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	94.83
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	94.82
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	94.79
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.49
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.26
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	94.17
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.08
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	94.03
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	93.77
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	93.71
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	93.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.44
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	93.34
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	93.21
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.12
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.81
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	92.21
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	91.83
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.81
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	91.55
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	91.32
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	91.05
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	90.61
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.28
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	89.78
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	89.78
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.44
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	88.92
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.77
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	88.12
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	87.98
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	87.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.84
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	87.43
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	87.19
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.25
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	84.26
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.07
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.88
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	82.97
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	82.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	81.87
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.84

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=5.5e-23  Score=186.97  Aligned_cols=172  Identities=16%  Similarity=0.207  Sum_probs=162.5

Q ss_pred             HHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864          122 LINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL  201 (498)
Q Consensus       122 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  201 (498)
                      ++.+++..    +..+|++++|+..|+++++++|+++.+|+++|.+|..+|+              +++|+..+.+++..
T Consensus         7 iy~~lG~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~a~~~~~~~~~~   68 (184)
T 3vtx_A            7 IYMDIGDK----KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------------PNDAIESLKKFVVL   68 (184)
T ss_dssp             HHHHHHHH----HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhc
Confidence            34444444    7789999999999999999999999999999999999999              99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       202 ~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                      +|++..++.++|.++..    .++++.|.       ..+.+++.++|++..++..+|.+|..+|++          ++|+
T Consensus        69 ~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~  127 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFM----IDEKQAAI-------DALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAI  127 (184)
T ss_dssp             CCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             CchhHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHH
Confidence            99999999999999999    99999999       689999999999999999999999999999          9999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       282 ~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                      ..|+++++++|+++.+++++|.+|..+|+                   +.+|..+|+++++++|++..|.
T Consensus       128 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~a~~~  178 (184)
T 3vtx_A          128 EAYEKTISIKPGFIRAYQSIGLAYEGKGL-------------------RDEAVKYFKKALEKEEKKAKYE  178 (184)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTTHHHHHHC
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhCCccCHHHH
Confidence            99999999999999999999999999999                   9999999999999999887653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.91  E-value=5.2e-23  Score=193.79  Aligned_cols=170  Identities=16%  Similarity=0.092  Sum_probs=161.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++++|+++.+++++|.++..+|+              +++|+..|+++++++|++..+++++|
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          214 IAISDRAKMR-----------GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       214 ~~~~~~~~~~-----------g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      .++..    +           |++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+.
T Consensus        81 ~~~~~----~~~~~~~~~~~~g~~~~A~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~A~~  139 (217)
T 2pl2_A           81 EAYVA----LYRQAEDRERGKGYLEQAL-------SVLKDAERVNPRYAPLHLQRGLVYALLGER----------DKAEA  139 (217)
T ss_dssp             HHHHH----HHHTCSSHHHHHHHHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHH
T ss_pred             HHHHH----hhhhhhhhcccccCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------HHHHH
Confidence            99999    7           7777777       799999999999999999999999999999          99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          283 KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       283 ~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      .|+++++++ +++.+++++|.+|..+|+                   +.+|..+|+++++++|++......+..+.
T Consensus       140 ~~~~al~~~-~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          140 SLKQALALE-DTPEIRSALAELYLSMGR-------------------LDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             HHHHHHHHC-CCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcc-cchHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999 999999999999999999                   99999999999999999997766665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=6.3e-23  Score=210.30  Aligned_cols=177  Identities=12%  Similarity=0.048  Sum_probs=159.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      +...|++++|+..|+++|+++|++..+|+++|.++..+| +              +++|+.+|+++++++|++..+|+++
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d--------------~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--------------LHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            456899999999999999999999999999999999999 6              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      |.++..    +|++++|+       ..|+++++++|++..+|+++|.++..+|++          ++|+.+|+++|+++|
T Consensus       173 g~~~~~----~g~~~eAl-------~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----------~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          173 RVLVEW----LRDPSQEL-------EFIADILNQDAKNYHAWQHRQWVIQEFKLW----------DNELQYVDQLLKEDV  231 (382)
T ss_dssp             HHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCT
T ss_pred             HHHHHH----ccCHHHHH-------HHHHHHHHhCccCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCC
Confidence            999999    99999999       799999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      ++..+|+++|.+|..++..             .....+..++.+|.+++.++|++......++.+-
T Consensus       232 ~~~~a~~~lg~~l~~l~~~-------------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll  284 (382)
T 2h6f_A          232 RNNSVWNQRYFVISNTTGY-------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL  284 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCS-------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCc-------------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            9999999999999994430             0111234457999999999999997666665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=2.9e-22  Score=205.35  Aligned_cols=195  Identities=11%  Similarity=0.021  Sum_probs=168.6

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRI-LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      .+++++|+..+.+++..+          +..+..+|+ +++|+.+|+++++++|+++.+|+++|.+|..+|+        
T Consensus       110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~--------  181 (382)
T 2h6f_A          110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--------  181 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--------
Confidence            467888999998888877          334567896 9999999999999999999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            +++|+.+|+++|+++|++..+|+++|.++..    +|++++|+       .+|+++++++|++..+|+++|.+|
T Consensus       182 ------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl-------~~~~~al~l~P~~~~a~~~lg~~l  244 (382)
T 2h6f_A          182 ------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYVDQLLKEDVRNNSVWNQRYFVI  244 (382)
T ss_dssp             ------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  9999999999999999999999999999999    99999999       799999999999999999999999


Q ss_pred             HH-hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHH
Q 010864          262 QE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  340 (498)
Q Consensus       262 ~~-~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  340 (498)
                      .. .|.+++|.     ++.++.+|++||+++|++..+|+++|.+|...|..                 .+.++..++.++
T Consensus       245 ~~l~~~~~eA~-----~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~-----------------~~~~a~~~~~~~  302 (382)
T 2h6f_A          245 SNTTGYNDRAV-----LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLS-----------------KYPNLLNQLLDL  302 (382)
T ss_dssp             HHTTCSCSHHH-----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGG-----------------GCHHHHHHHHHH
T ss_pred             HHhcCcchHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCcc-----------------chHHHHHHHHHh
Confidence            99 66661111     13336999999999999999999999999998731                 057788888887


Q ss_pred             HhcCCCHHHHHHHHH
Q 010864          341 HALKPSYSVYSSALR  355 (498)
Q Consensus       341 l~l~p~~~~~~~~l~  355 (498)
                       +.+|++......+.
T Consensus       303 -~~~p~~~~al~~La  316 (382)
T 2h6f_A          303 -QPSHSSPYLIAFLV  316 (382)
T ss_dssp             -TTTCCCHHHHHHHH
T ss_pred             -ccCCCCHHHHHHHH
Confidence             88898875544443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.89  E-value=1.7e-22  Score=222.79  Aligned_cols=159  Identities=28%  Similarity=0.346  Sum_probs=152.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +..+|++++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+..|++|++++|+++.+|++||
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------------~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            6679999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+|..    +|++++|+       .+|+++++++|+++.+++++|.+|..+|++          ++|+.+|++|++++|+
T Consensus        85 ~~l~~----~g~~~~A~-------~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~----------~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A           85 NTLKE----MQDVQGAL-------QCYTRAIQINPAFADAHSNLASIHKDSGNI----------PEAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSC
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCC
Confidence            99999    99999999       699999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      ++.++++||.+|..+|+                   +.+|.++|++++++.|+
T Consensus       144 ~~~a~~~L~~~l~~~g~-------------------~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          144 FPDAYCNLAHCLQIVCD-------------------WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CHHHHHHHHHHHHHTTC-------------------CTTHHHHHHHHHHHHHH
T ss_pred             ChHHHhhhhhHHHhccc-------------------HHHHHHHHHHHHHhChh
Confidence            99999999999999998                   77788888888877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=6.4e-22  Score=186.26  Aligned_cols=176  Identities=14%  Similarity=0.147  Sum_probs=151.5

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES----------  171 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----------  171 (498)
                      ..+++++|+..+.+++..+          +..+..+|++++|+..|+++++++|+++.+++++|.++..+          
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            3577888999998888776          34567889999999999999999999999999999999999          


Q ss_pred             -cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          172 -ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       172 -g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                       |+              +++|+..|+++++++|++..+++++|.++..    +|++++|+       ..|+++++++ ++
T Consensus        97 ~g~--------------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~-~~  150 (217)
T 2pl2_A           97 KGY--------------LEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAE-------ASLKQALALE-DT  150 (217)
T ss_dssp             HHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHC-CC
T ss_pred             ccC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHhcc-cc
Confidence             88              9999999999999999999999999999999    99999999       6999999999 99


Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHH
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELY  330 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~  330 (498)
                      +.+++++|.+|..+|++          ++|+..|+++++++|+++.+++++|.++..+|+                   +
T Consensus       151 ~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-------------------~  201 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRL----------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK-------------------A  201 (217)
T ss_dssp             HHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------------
T ss_pred             hHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-------------------H
Confidence            99999999999999999          999999999999999999999999999999998                   7


Q ss_pred             HHHHHHHHHHHh
Q 010864          331 SQSAIYIAAAHA  342 (498)
Q Consensus       331 ~~A~~~~~~Al~  342 (498)
                      .+|..+|+++..
T Consensus       202 ~~A~~~~~~~~~  213 (217)
T 2pl2_A          202 EEAARAAALEHH  213 (217)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHhh
Confidence            888888877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=1.8e-21  Score=183.36  Aligned_cols=191  Identities=17%  Similarity=0.243  Sum_probs=167.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      +...|++++|+..|+++++++| .+..+++++|.++..+|+              +++|+..|+++++++|++..+++++
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------------YKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHHhCcchHHHHHHH
Confidence            6779999999999999999999 999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~-------~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      |.+|..    +|++++|+       ..|+++++++|++.       .+++++|.++..+|++          ++|+.+|+
T Consensus        83 ~~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~  141 (228)
T 4i17_A           83 SAAYRD----MKNNQEYI-------ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI----------EKAEENYK  141 (228)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHH
T ss_pred             HHHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH----------HHHHHHHH
Confidence            999999    99999999       69999999999999       6688889998888888          99999999


Q ss_pred             HHHHhcCC--CHHHHHHHHHHHHHcchhHHhccCCCCCCC--------CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          286 AAIQLQFD--FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE--------VSPNELYSQSAIYIAAAHALKPSYSVYSSALR  355 (498)
Q Consensus       286 ~Al~l~P~--~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~  355 (498)
                      ++++++|+  +..+++++|.+|..+|+.....+..+....        ......+.+|..+|+++++++|++......+.
T Consensus       142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          142 HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            99999999  999999999999999986333322211111        01123568999999999999999998877777


Q ss_pred             HHHc
Q 010864          356 LVRS  359 (498)
Q Consensus       356 ~~~~  359 (498)
                      .++.
T Consensus       222 ~i~~  225 (228)
T 4i17_A          222 QVKA  225 (228)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.86  E-value=3.6e-20  Score=188.34  Aligned_cols=162  Identities=21%  Similarity=0.201  Sum_probs=107.8

Q ss_pred             hcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          114 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      +++++|...+.+++...          +..+...|++++|+..|+++++++|++..+++++|.++...|+          
T Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------  218 (388)
T 1w3b_A          149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI----------  218 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC----------
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------
Confidence            55666666666555443          2234456666777777777777777777777777777766666          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                          +++|+..|++++.++|++..+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.++..
T Consensus       219 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          219 ----FDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAI-------DTYRRAIELQPHFPDAYCNLANALKE  283 (388)
T ss_dssp             ----TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence                6677777777777777766677777777766    67766666       57777777777777777777777777


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      .|++          ++|+..|++++++.|++..+++++|.++...|+
T Consensus       284 ~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  320 (388)
T 1w3b_A          284 KGSV----------AEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             cCCH----------HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence            7777          556666666666555555555556655555555

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=178.72  Aligned_cols=201  Identities=13%  Similarity=0.083  Sum_probs=153.4

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST  180 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~  180 (498)
                      ..+++++|...+.+++...          +..+...| ++++|+.+|++++.++|+++.+|+.+|.++...|+       
T Consensus        68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------  140 (330)
T 3hym_B           68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-------  140 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC-------
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC-------
Confidence            4567788888887777655          23345667 88888888888888888888888888888888888       


Q ss_pred             CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                             +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++.+|++..+++++|.+
T Consensus       141 -------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~  202 (330)
T 3hym_B          141 -------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAE-------RFFSQALSIAPEDPFVMHEVGVV  202 (330)
T ss_dssp             -------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHhCCCChHHHHHHHHH
Confidence                   8888888888888888888888888888888    88888888       68888888888888888889988


Q ss_pred             HHHhcCcchH---------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          261 LQELSAIVPA---------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       261 l~~~g~~~~a---------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                      +...|++++|                                 +...|++++|+.+|+++++++|++..+++++|.+|..
T Consensus       203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  282 (330)
T 3hym_B          203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL  282 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence            8888888554                                 1124556777777777777777777777777777777


Q ss_pred             cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       308 ~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +|+                   +.+|..+|+++++++|++......+..
T Consensus       283 ~g~-------------------~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          283 MGN-------------------FENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HTC-------------------HHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             hcc-------------------HHHHHHHHHHHHccCCCchHHHHHHHH
Confidence            776                   677777777777777777654444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=6.5e-20  Score=193.27  Aligned_cols=195  Identities=16%  Similarity=0.138  Sum_probs=169.0

Q ss_pred             hcHHHHHHHHHHhhhcc----------hhhHHhhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          114 EQNNAAMELINSVTGVD----------EEGRSRQRIL-TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      ...+.++..+.......          +..+...|++ ++|+.+|+++++++|+++.+|+++|.+|..+|+         
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---------  152 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD---------  152 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---------
Confidence            34555666665544332          3346678999 999999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR--GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~--g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                           +++|+.+|+++++++|+ ..+++++|.+|..    +  +...+....|++|+..|+++++++|++..+|+++|.+
T Consensus       153 -----~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  222 (474)
T 4abn_A          153 -----VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA  222 (474)
T ss_dssp             -----HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT----CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH----hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 99999999999999999 7999999999998    8  4444444445555589999999999999999999999


Q ss_pred             HHHh--------cCcchHHhhhhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHH
Q 010864          261 LQEL--------SAIVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL  329 (498)
Q Consensus       261 l~~~--------g~~~~a~~~~~~~~~Ai~~~~~Al~l~P---~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~  329 (498)
                      |..+        |++          ++|+.+|+++++++|   +++.+++++|.+|..+|+                   
T Consensus       223 ~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-------------------  273 (474)
T 4abn_A          223 YLSLYFNTGQNPKIS----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-------------------  273 (474)
T ss_dssp             HHHHHHHTTCCHHHH----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHhhccccchH----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-------------------
Confidence            9999        888          999999999999999   999999999999999999                   


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          330 YSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       330 ~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +.+|..+|+++++++|++......+..
T Consensus       274 ~~~A~~~~~~al~l~p~~~~a~~~l~~  300 (474)
T 4abn_A          274 YGEALEGFSQAAALDPAWPEPQQREQQ  300 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999999999855544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=1.8e-19  Score=181.36  Aligned_cols=176  Identities=18%  Similarity=0.203  Sum_probs=156.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +.+.|++++|+.+|++++..+|+++.+|+.+|.+|..+|+              +++|+..|+++++++|++..+++++|
T Consensus        75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN--------------EQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4667888888888888888888888888888888888888              88888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH-------------------------------------HHHHHHHHHhcCCC--CHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ-------------------------------------ATKNYEKAVQLNWN--SPQAL  254 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~-------------------------------------Al~~~~~Al~l~P~--~~~a~  254 (498)
                      .+|..    +|++++|++.|++                                     |+..|+++++++|+  ++.++
T Consensus       141 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  216 (365)
T 4eqf_A          141 VSYTN----TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ  216 (365)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred             HHHHc----cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence            88888    8888888876543                                     55688999999999  99999


Q ss_pred             HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       255 ~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                      +++|.+|..+|++          ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|.
T Consensus       217 ~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------------~~~A~  267 (365)
T 4eqf_A          217 TGLGVLFHLSGEF----------NRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-------------------SEEAV  267 (365)
T ss_dssp             HHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHH
T ss_pred             HHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------------HHHHH
Confidence            9999999999999          999999999999999999999999999999999                   99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHH
Q 010864          335 IYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       335 ~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      .+|+++++++|++......+..
T Consensus       268 ~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          268 EAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHH
Confidence            9999999999998855554444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=8.8e-20  Score=171.90  Aligned_cols=172  Identities=22%  Similarity=0.205  Sum_probs=162.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|+..|+++++++|++..+++++
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM--------------YKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36678999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      |.++..    .|++++|+       ..|+++++.+|++..+++++|.++...|++          ++|+..|+++++..|
T Consensus       132 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          132 GTVLVK----LEQPKLAL-------PYLQRAVELNENDTEARFQFGMCLANEGML----------DEALSQFAAVTEQDP  190 (243)
T ss_dssp             HHHHHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHCT
T ss_pred             HHHHHH----hccHHHHH-------HHHHHHHHhCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCc
Confidence            999999    99999999       688999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      ++..+++++|.+|..+|+                   +.+|..+|+++++++|++......+..+.
T Consensus       191 ~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          191 GHADAFYNAGVTYAYKEN-------------------REKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTC-------------------TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             ccHHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            999999999999999999                   89999999999999999997776655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=2.5e-20  Score=205.48  Aligned_cols=151  Identities=25%  Similarity=0.355  Sum_probs=143.0

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      ..|+++++|++||.+|.++|+              +++|++.|++|++++|++..+|++||.+|..    +|++++|+  
T Consensus         4 s~P~~a~al~nLG~~~~~~G~--------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~--   63 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEAL--   63 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence            469999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864          233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  312 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~  312 (498)
                           .+|++|++++|+++.++++||.+|..+|++          ++|+.+|++|++++|+++.++++||.+|..+|+  
T Consensus        64 -----~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--  126 (723)
T 4gyw_A           64 -----MHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHKDSGN--  126 (723)
T ss_dssp             -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             -----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence                 699999999999999999999999999999          999999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                                       +.+|+.+|+++++++|++......+..+
T Consensus       127 -----------------~~eAi~~~~~Al~l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A          127 -----------------IPEAIASYRTALKLKPDFPDAYCNLAHC  154 (723)
T ss_dssp             -----------------HHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence                             9999999999999999998666555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=5.8e-21  Score=169.22  Aligned_cols=142  Identities=12%  Similarity=-0.032  Sum_probs=135.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +..+|++++|+..|++++..+|+++.+++.+|.+|+.+|+              |++|+..|+++++++|+++.+|+++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------------YDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4568999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH-HHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK-FRAAIQLQF  292 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~-~~~Al~l~P  292 (498)
                      .+|..    +|++++|+       .+|+++++++|+++.+++++|.+|.++|++          ++|+.. +++|++++|
T Consensus        73 ~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           73 LLYEL----EENTDKAV-------ECYRRSVELNPTQKDLVLKIAELLCKNDVT----------DGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----------SSHHHHHHHHHHHHST
T ss_pred             HHHHH----cCchHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhCc
Confidence            99999    99999999       699999999999999999999999999999          887765 599999999


Q ss_pred             CCHHHHHHHHHHHHHcch
Q 010864          293 DFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~  310 (498)
                      +++.++..++.++...|+
T Consensus       132 ~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          132 GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999998885

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.84  E-value=4.8e-20  Score=172.20  Aligned_cols=163  Identities=18%  Similarity=0.105  Sum_probs=145.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYN----------------WALVLQESADNVSLDSTSPSKDALLEEACKKYDE  197 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~----------------lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~  197 (498)
                      +...|++++|+.+|+++++++|+++.+|+.                +|.+|..+|+              +++|+..|++
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~   79 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------------YDKAYLFYKE   79 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH
Confidence            467899999999999999999999999999                9999999999              9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       198 Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      +++++|++..+++++|.++..    +|++++|+       ..|+++++++|+++.+++++|.+|...|+.        ..
T Consensus        80 al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------~~  140 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVC----RGQEKDAL-------RMYEKILQLEADNLAANIFLGNYYYLTAEQ--------EK  140 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--------HH
T ss_pred             HHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHhHH--------HH
Confidence            999999999999999999999    99999999       799999999999999999999999887753        22


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      +.++..|++++...|. ..+++++|.++..+|+                   +.+|+.+|+++++++|+...
T Consensus       141 ~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-------------------~~~A~~~~~~al~l~P~~~~  192 (208)
T 3urz_A          141 KKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-------------------YEKARNSLQKVILRFPSTEA  192 (208)
T ss_dssp             HHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-------------------HHHHHHHHHHHTTTSCCHHH
T ss_pred             HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHhCCCHHH
Confidence            6778888888754443 3578899999999998                   99999999999999998763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=2.1e-19  Score=182.67  Aligned_cols=176  Identities=30%  Similarity=0.332  Sum_probs=107.4

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|++++|+..+++++..+|.++.+|+.+|.+|...|+              +++|+..|+++++++|++..+++++|.
T Consensus        44 ~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~  109 (388)
T 1w3b_A           44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--------------LQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            344555555555555555555555555555555555555              555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHH---------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          215 AISDRAKMRGRTKEAEELWK---------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~---------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ++..    .|++++|++.|+                           +|+..|+++++.+|++..+++++|.++...|++
T Consensus       110 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  185 (388)
T 1w3b_A          110 ALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI  185 (388)
T ss_dssp             HHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            5555    555555552111                           111456666666666666666666666666666


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                                ++|+..|+++++++|++..+++++|.++...|+                   +.+|..+|.+++.++|++
T Consensus       186 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-------------------~~~A~~~~~~al~~~p~~  236 (388)
T 1w3b_A          186 ----------WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI-------------------FDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-------------------TTHHHHHHHHHHHHCTTC
T ss_pred             ----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhCcCC
Confidence                      777777777777777777777777777777776                   677778888888888877


Q ss_pred             HHHHHHHHHH
Q 010864          348 SVYSSALRLV  357 (498)
Q Consensus       348 ~~~~~~l~~~  357 (498)
                      ......+..+
T Consensus       237 ~~~~~~l~~~  246 (388)
T 1w3b_A          237 AVVHGNLACV  246 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=1.8e-19  Score=181.44  Aligned_cols=196  Identities=18%  Similarity=0.189  Sum_probs=174.5

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC------
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV------  175 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~------  175 (498)
                      ..+++++|+..+.+++...          +..+...|++++|+.+|+++++++|+++.+|+++|.+|..+|+..      
T Consensus        77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  156 (365)
T 4eqf_A           77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL  156 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHH
Confidence            4578889999998888765          345677899999999999999999999999999999999999841      


Q ss_pred             ------CC------------------CCCCCchhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864          176 ------SL------------------DSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       176 ------~~------------------~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                            .+                  -+..+...+++++|+..|+++++++|+  ++.+++++|.++..    +|++++|
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A  232 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRA  232 (365)
T ss_dssp             HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHH
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHH
Confidence                  01                  033556678899999999999999999  89999999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       230 ~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      +       ..|+++++++|+++.+++++|.+|...|++          ++|+.+|+++++++|++..+++++|.+|..+|
T Consensus       233 ~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          233 I-------DAFNAALTVRPEDYSLWNRLGATLANGDRS----------EEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             H-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             H-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            9       699999999999999999999999999999          99999999999999999999999999999999


Q ss_pred             hhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          310 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      +                   +.+|..+|++++++.|+.
T Consensus       296 ~-------------------~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          296 A-------------------YREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             C-------------------CHHHHHHHHHHHHHHHCC
T ss_pred             C-------------------HHHHHHHHHHHHHhCccc
Confidence            9                   899999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=4.6e-19  Score=177.83  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=160.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++.+|+++.+++.+|.+|...|+              +++|+..|+++++++|++..+++++|
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~l~  139 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ--------------ELLAISALRRCLELKPDNQTALMALA  139 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC--------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHH------------------------------------------HHHHHHHHHHhcCCC--
Q 010864          214 IAISDRAKMRGRTKEAEELWK------------------------------------------QATKNYEKAVQLNWN--  249 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~------------------------------------------~Al~~~~~Al~l~P~--  249 (498)
                      .++..    .|++++|++.|+                                          +|+..|+++++++|+  
T Consensus       140 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  215 (368)
T 1fch_A          140 VSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  215 (368)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence            99999    999999887665                                          456789999999999  


Q ss_pred             CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHH
Q 010864          250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL  329 (498)
Q Consensus       250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~  329 (498)
                      ++.+++++|.++...|++          ++|+.+|+++++++|+++.+++++|.++...|+                   
T Consensus       216 ~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------------------  266 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEY----------DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-------------------  266 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------
T ss_pred             cHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-------------------
Confidence            899999999999999999          999999999999999999999999999999999                   


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          330 YSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       330 ~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +.+|..+|+++++++|++......+..
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~  293 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGI  293 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            999999999999999998855554444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.6e-19  Score=169.77  Aligned_cols=189  Identities=17%  Similarity=0.156  Sum_probs=169.7

Q ss_pred             hhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCcCC
Q 010864          113 AEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPED-------YDALYNWALVLQESADNVS  176 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~~~~  176 (498)
                      .+++++|+..+.+++...         +..+...|++++|+..|+++++++|++       +.+++.+|.+|..+|+   
T Consensus        18 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---   94 (258)
T 3uq3_A           18 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD---   94 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc---
Confidence            467777888777766543         345677899999999999999999887       7999999999999999   


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864          177 LDSTSPSKDALLEEACKKYDEATR--------------------------LCPTLHDAFYNWAIAISDRAKMRGRTKEAE  230 (498)
Q Consensus       177 ~~~~~~~~~~~~~~A~~~~~~Al~--------------------------l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~  230 (498)
                                 +++|+..|++++.                          .+|++..+++++|.++..    .|++++|+
T Consensus        95 -----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~  159 (258)
T 3uq3_A           95 -----------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWPNAV  159 (258)
T ss_dssp             -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             -----------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHHHHH
Confidence                       8888888888888                          677788899999999999    99999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       231 ~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                             ..|+++++.+|++..+++++|.++...|++          ++|+.+|+++++++|++..+++++|.+|..+|+
T Consensus       160 -------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          160 -------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             -------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHhcCcccHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence                   699999999999999999999999999999          999999999999999999999999999999999


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC------CCHHHHHHHHH
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALR  355 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~------p~~~~~~~~l~  355 (498)
                                         +.+|..+|+++++++      |++......+.
T Consensus       223 -------------------~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          223 -------------------YASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence                               999999999999999      88876655543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=1.8e-18  Score=171.67  Aligned_cols=203  Identities=13%  Similarity=0.040  Sum_probs=162.8

Q ss_pred             hhhcHHHHHHHHHHhhhcch-------------------------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          112 LAEQNNAAMELINSVTGVDE-------------------------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWAL  166 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~-------------------------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~  166 (498)
                      ..+++++|...+.+++....                         ..+...|++++|+..|++++..+|+++.++..+|.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            45777888888887766543                         34567899999999999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864          167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL  246 (498)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l  246 (498)
                      ++...|+              +++|+..|+++++++|++..+++++|.++..    .|++++|+.       .|+++++.
T Consensus       163 ~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~-------~~~~a~~~  217 (359)
T 3ieg_A          163 CFIKEGE--------------PRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLS-------EVRECLKL  217 (359)
T ss_dssp             HHHHTTC--------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHH-------HHHHHHHH
T ss_pred             HHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH-------HHHHHHhh
Confidence            9999999              9999999999999999999999999999999    999999995       44444444


Q ss_pred             CCCCHHHHH------------HHHHHHHHhcCcchH----------------------------HhhhhhHHHHHHHHHH
Q 010864          247 NWNSPQALN------------NWGLALQELSAIVPA----------------------------REKQTIVRTAISKFRA  286 (498)
Q Consensus       247 ~P~~~~a~~------------~lg~~l~~~g~~~~a----------------------------~~~~~~~~~Ai~~~~~  286 (498)
                      +|++..++.            .+|.++...|++++|                            +...|++++|+..|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  297 (359)
T 3ieg_A          218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE  297 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            444444332            224444444444333                            1123444999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      +++++|+++.+++++|.+|..+|+                   +.+|..+|+++++++|++......+..+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          298 VLQMEPDNVNALKDRAEAYLIEEM-------------------YDEAIQDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999999999999999999998                   89999999999999999887666665544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=7.8e-20  Score=157.16  Aligned_cols=122  Identities=16%  Similarity=0.114  Sum_probs=115.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010864          149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE  228 (498)
Q Consensus       149 ~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e  228 (498)
                      ++..+||+.++++.++|.+|+..|+              |++|+..|+++++++|+++.+|+++|.+|..    +|++++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~   65 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD--------------YPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQR   65 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHH
Confidence            4556899999999999999999999              9999999999999999999999999999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                      |+       ..|+++++++|++..+|+++|.+|..+|++          ++|+..|+++++++|++..++.+|+.++
T Consensus        66 A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           66 AL-------DDCDTCIRLDSKFIKGYIRKAACLVAMREW----------SKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HH-------HHHHHHHHhhhhhhHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99       699999999999999999999999999999          9999999999999999999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1e-18  Score=165.56  Aligned_cols=176  Identities=17%  Similarity=0.130  Sum_probs=164.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-------H
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-------H  206 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-------~  206 (498)
                      +...|++++|+.+|+++++.+ +++.+++.+|.+|..+|+              +++|+..|+++++++|++       .
T Consensus        15 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A           15 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE--------------YETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCcccccchHHHH
Confidence            677999999999999999999 999999999999999999              999999999999999887       7


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATK-------------------NYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~-------------------~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .+++++|.++..    .|++++|++.|++++.                   .+++++..+|.+..+++++|.++...|++
T Consensus        80 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           80 KSFARIGNAYHK----LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHH----cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            999999999999    9999999988877665                   68888889999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                                ++|+.+|+++++++|+++.+++++|.++..+|+                   +.+|..+|.++++++|++
T Consensus       156 ----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          156 ----------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-------------------FPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTC
T ss_pred             ----------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHHHhCHHH
Confidence                      999999999999999999999999999999999                   999999999999999998


Q ss_pred             HHHHHHHHHH
Q 010864          348 SVYSSALRLV  357 (498)
Q Consensus       348 ~~~~~~l~~~  357 (498)
                      ......+..+
T Consensus       207 ~~~~~~l~~~  216 (258)
T 3uq3_A          207 VRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8655544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=2.6e-18  Score=172.29  Aligned_cols=196  Identities=19%  Similarity=0.201  Sum_probs=174.9

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC------
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV------  175 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~------  175 (498)
                      ..+++++|+..+.+++...          +..+...|++++|+..|+++++++|+++.+++.+|.+|...|+..      
T Consensus        76 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  155 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL  155 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4578889999998888765          345678899999999999999999999999999999999998841      


Q ss_pred             ------CCCC-----------------------CCCchhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcC
Q 010864          176 ------SLDS-----------------------TSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRG  224 (498)
Q Consensus       176 ------~~~~-----------------------~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~~~lg~~~~~~~~~~g  224 (498)
                            .+..                       ......+++++|+..|+++++++|+  +..+++++|.++..    .|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g  231 (368)
T 1fch_A          156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SG  231 (368)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TT
T ss_pred             HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cC
Confidence                  1110                       0112457889999999999999999  89999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      ++++|+       ..|++++.++|+++.+++++|.++...|++          ++|+..|+++++++|++..+++++|.+
T Consensus       232 ~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          232 EYDKAV-------DCFTAALSVRPNDYLLWNKLGATLANGNQS----------EEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             CHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999       688999999999999999999999999999          999999999999999999999999999


Q ss_pred             HHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          305 LYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       305 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      |..+|+                   +.+|..+|++++++.|++
T Consensus       295 ~~~~g~-------------------~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          295 CINLGA-------------------HREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHTC-------------------HHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCC-------------------HHHHHHHHHHHHHhCCCC
Confidence            999999                   999999999999999987

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=2e-19  Score=197.94  Aligned_cols=168  Identities=8%  Similarity=-0.021  Sum_probs=159.8

Q ss_pred             HhhccHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864          135 SRQRILTFAAKRYANAI--------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  206 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al--------~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  206 (498)
                      ...|++++|+..|++++        +.+|++.++++.+|.+|..+|+              +++|+..|+++++++|++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD--------------VAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCCCH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHhccCcchH
Confidence            45799999999999999        9999999999999999999999              9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      .+|+++|.++..    +|++++|+       ..|+++++++|+++.+++++|.+|.++|++          ++ +.+|++
T Consensus       468 ~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----------~~-~~~~~~  525 (681)
T 2pzi_A          468 RLVWYRAVAELL----TGDYDSAT-------KHFTEVLDTFPGELAPKLALAATAELAGNT----------DE-HKFYQT  525 (681)
T ss_dssp             HHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----------CT-TCHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHcCCh----------HH-HHHHHH
Confidence            999999999999    99999999       799999999999999999999999999999          99 999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      |++++|++..+++++|.+|..+|+                   +.+|+.+|+++++++|++......+..+
T Consensus       526 al~~~P~~~~a~~~lg~~~~~~g~-------------------~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          526 VWSTNDGVISAAFGLARARSAEGD-------------------RVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HHHhCCchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            999999999999999999999999                   9999999999999999998666655554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=3.2e-18  Score=162.66  Aligned_cols=167  Identities=19%  Similarity=0.161  Sum_probs=151.6

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH--hCCCCHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--LCPTLHDAFY  210 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~--l~p~~~~a~~  210 (498)
                      .+...|++++|+..|+++++.+|++..+++.+|.+|...|+              +++|+..|++++.  .+|.+..+++
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~  145 (252)
T 2ho1_A           80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR--------------YEEAYQRLLEASQDTLYPERSRVFE  145 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHhCccCcccHHHHH
Confidence            45678999999999999999999999999999999999999              9999999999999  8888889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      ++|.++..    .|++++|+       ..|+++++.+|.+..++..+|.++..+|++          ++|+.+|+++++.
T Consensus       146 ~la~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~  204 (252)
T 2ho1_A          146 NLGLVSLQ----MKKPAQAK-------EYFEKSLRLNRNQPSVALEMADLLYKEREY----------VPARQYYDLFAQG  204 (252)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTT
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence            99999999    99999988       688888888999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA  353 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~  353 (498)
                      .|++..++..++.++...|+                   +.+|..++++++++.|++..+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          205 GGQNARSLLLGIRLAKVFED-------------------RDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHHCCCCHHHHHH
Confidence            99999999999999999998                   899999999999999998866543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=1.5e-18  Score=166.66  Aligned_cols=193  Identities=12%  Similarity=0.033  Sum_probs=166.2

Q ss_pred             hhhhcHHHHHHHHHHhhhcc-------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC
Q 010864          111 QLAEQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL  177 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~-------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~  177 (498)
                      ...+++++|+..+.+++...             +..+...|++++|+.+|+++++++|+++.++.++|.+|..+|+    
T Consensus        48 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----  123 (272)
T 3u4t_A           48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN----  123 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC----
T ss_pred             HHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC----
Confidence            35678889999888887622             3345677999999999999999999999999999999999999    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA-IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg-~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                                +++|+..|+++++++|++..+++++| .+|.     .+++++|+       ..|+++++++|++..++++
T Consensus       124 ----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~  181 (272)
T 3u4t_A          124 ----------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-----NKEYVKAD-------SSFVKVLELKPNIYIGYLW  181 (272)
T ss_dssp             ----------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-----TTCHHHHH-------HHHHHHHHHSTTCHHHHHH
T ss_pred             ----------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-----HHHHHHHH-------HHHHHHHHhCccchHHHHH
Confidence                      99999999999999999999999999 5554     55777777       7999999999999999999


Q ss_pred             HHHHHHHhcC---cchHHhhhhhHHHHHHHHHHHHHhc---CC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCC
Q 010864          257 WGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQ---FD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS  325 (498)
Q Consensus       257 lg~~l~~~g~---~~~a~~~~~~~~~Ai~~~~~Al~l~---P~-----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~  325 (498)
                      +|.++..+|+   +          ++|+..|++++++.   |+     ...++.++|.+|...|+               
T Consensus       182 ~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------  236 (272)
T 3u4t_A          182 RARANAAQDPDTKQ----------GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD---------------  236 (272)
T ss_dssp             HHHHHHHHSTTCSS----------CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHHcCcchhh----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC---------------
Confidence            9999999998   8          99999999999986   55     24789999999999999               


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          326 PNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       326 ~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                          +.+|..+|+++++++|++......+..+.
T Consensus       237 ----~~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          237 ----KVKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             ----HHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             ----HHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence                99999999999999999998877766544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=1.2e-18  Score=156.29  Aligned_cols=161  Identities=12%  Similarity=0.079  Sum_probs=154.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++.+|.++...|+              +++|+..|+++++++|++..+++++|
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a   83 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADAPDNVKVATVLG   83 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    .|++++|+       ..|++++..+|++..++.++|.++...|++          ++|+.+|+++++..|+
T Consensus        84 ~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~  142 (186)
T 3as5_A           84 LTYVQ----VQKYDLAV-------PLLIKVAEANPINFNVRFRLGVALDNLGRF----------DEAIDSFKIALGLRPN  142 (186)
T ss_dssp             HHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTT
T ss_pred             HHHHH----hcCHHHHH-------HHHHHHHhcCcHhHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHhcCcc
Confidence            99999    99999999       688899999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      +..+++++|.++...|+                   +.+|..+|+++++++|++.
T Consensus       143 ~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          143 EGKVHRAIAFSYEQMGR-------------------HEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             CHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCch
Confidence            99999999999999999                   8999999999999888754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=4.9e-18  Score=157.49  Aligned_cols=168  Identities=15%  Similarity=0.079  Sum_probs=153.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++.+|++..+++.+|.+|...|+              +++|+..|++++.++|++..+++++|
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          214 IAISDRAKMR-GRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       214 ~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .++..    . |++++|+       ..|+++++  .+|.+..+++++|.++...|++          ++|+.+|+++++.
T Consensus        84 ~~~~~----~~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~  142 (225)
T 2vq2_A           84 WFLCG----RLNRPAESM-------AYFDKALADPTYPTPYIANLNKGICSAKQGQF----------GLAEAYLKRSLAA  142 (225)
T ss_dssp             HHHHT----TTCCHHHHH-------HHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHH----hcCcHHHHH-------HHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence            99999    9 9999999       57777777  6677889999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP-SYSVYSSALR  355 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~~~~~l~  355 (498)
                      .|++..+++++|.++...|+                   +.+|..+|++++.+.| ++......+.
T Consensus       143 ~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T 2vq2_A          143 QPQFPPAFKELARTKMLAGQ-------------------LGDADYYFKKYQSRVEVLQADDLLLGW  189 (225)
T ss_dssp             STTCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999998                   8999999999999999 7775444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=1e-17  Score=155.25  Aligned_cols=188  Identities=16%  Similarity=0.079  Sum_probs=169.9

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCcCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLDSTS  181 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~~~~~~  181 (498)
                      .+++++|+..+.+++...          +..+...|++++|+.+|++++..+|++..+++.+|.++... |+        
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~--------   92 (225)
T 2vq2_A           21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR--------   92 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC--------
T ss_pred             HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc--------
Confidence            466777777777766554          23467789999999999999999999999999999999999 99        


Q ss_pred             CchhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL  259 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~--l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~  259 (498)
                            +++|+..|+++++  .+|.+..+++++|.++..    .|++++|+       ..|+++++.+|++..++.++|.
T Consensus        93 ------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A           93 ------PAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAE-------AYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             ------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCchHHHHHHH
Confidence                  9999999999999  677778999999999999    99999999       6888999999999999999999


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  338 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P-~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  338 (498)
                      ++...|++          ++|+..|++++++.| ++..++..++.++...|+                   +..+..+++
T Consensus       156 ~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~  206 (225)
T 2vq2_A          156 TKMLAGQL----------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN-------------------AQAAYEYEA  206 (225)
T ss_dssp             HHHHHTCH----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHH
T ss_pred             HHHHcCCH----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc-------------------HHHHHHHHH
Confidence            99999999          999999999999999 999999999999999998                   788999999


Q ss_pred             HHHhcCCCHHHHHHHH
Q 010864          339 AAHALKPSYSVYSSAL  354 (498)
Q Consensus       339 ~Al~l~p~~~~~~~~l  354 (498)
                      .+..++|++..+...+
T Consensus       207 ~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          207 QLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHCTTCHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHh
Confidence            9999999998765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=8e-18  Score=159.87  Aligned_cols=169  Identities=18%  Similarity=0.122  Sum_probs=159.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++.+|.+|...|+              +++|+..|+++++++|++..+++++|
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la  112 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASDSRNARVLNNYG  112 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      .++..    .|++++|+       ..|++++.  .+|.+..+++++|.++...|++          ++|+.+|++++++.
T Consensus       113 ~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          113 GFLYE----QKRYEEAY-------QRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------AQAKEYFEKSLRLN  171 (252)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred             HHHHH----HhHHHHHH-------HHHHHHHhCccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcC
Confidence            99999    99999999       68888888  8899999999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      |++..+++.+|.++..+|+                   +.+|..+|+++++..|++......+..
T Consensus       172 ~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~  217 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKERE-------------------YVPARQYYDLFAQGGGQNARSLLLGIR  217 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            9999999999999999999                   999999999999999998855444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=2.4e-17  Score=161.86  Aligned_cols=194  Identities=14%  Similarity=0.128  Sum_probs=171.1

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC-------
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV-------  175 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-------  175 (498)
                      .+++++|...+.+++...          +..+...|++++|+..|+++++++|++..++..+|.+|...|+..       
T Consensus        34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  113 (327)
T 3cv0_A           34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  113 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            356677777776665544          334667899999999999999999999999999999999888741       


Q ss_pred             -----CCC----------------------CC-CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010864          176 -----SLD----------------------ST-SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK  227 (498)
Q Consensus       176 -----~~~----------------------~~-~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~  227 (498)
                           .+.                      +. .+...+++++|+..|+++++.+|++..+++.+|.++..    .|+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~  189 (327)
T 3cv0_A          114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SNNYD  189 (327)
T ss_dssp             HHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHH
T ss_pred             HHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hccHH
Confidence                 111                      22 36677899999999999999999999999999999999    99999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       228 eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                      +|+       ..|+++++.+|++..+++++|.++...|++          ++|+.+|++++++.|++..+++++|.+|..
T Consensus       190 ~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          190 SAA-------ANLRRAVELRPDDAQLWNKLGATLANGNRP----------QEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999       688899999999999999999999999999          999999999999999999999999999999


Q ss_pred             cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       308 ~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +|+                   +.+|..+|++++.+.|+
T Consensus       253 ~g~-------------------~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          253 MSQ-------------------YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             TTC-------------------HHHHHHHHHHHHHHHTT
T ss_pred             hcc-------------------HHHHHHHHHHHHHhCCc
Confidence            999                   99999999999999999

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=6.2e-18  Score=153.35  Aligned_cols=149  Identities=19%  Similarity=0.227  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      +++.+|+++|.+|..+|+              +++|+..|+++++++|++..+++++|.+|..    +|++++|+     
T Consensus         3 e~~~iy~~lG~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~a~-----   59 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGD--------------FDGAIRAYKKVLKADPNNVETLLKLGKTYMD----IGLPNDAI-----   59 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             cHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-----
Confidence            578899999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010864          236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT  315 (498)
Q Consensus       236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~  315 (498)
                        ..+.+++..+|++..++.++|.++...+++          +.|+..++++++++|++..+++.+|.+|..+|+     
T Consensus        60 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-----  122 (184)
T 3vtx_A           60 --ESLKKFVVLDTTSAEAYYILGSANFMIDEK----------QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-----  122 (184)
T ss_dssp             --HHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----
T ss_pred             --HHHHHHHhcCchhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-----
Confidence              699999999999999999999999999999          999999999999999999999999999999999     


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                                    +.+|+.+|+++++++|++......++.+.
T Consensus       123 --------------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A          123 --------------HDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             --------------chhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence                          99999999999999999997666665554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=7.6e-18  Score=177.76  Aligned_cols=200  Identities=15%  Similarity=0.119  Sum_probs=178.1

Q ss_pred             hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      ..+++++|...+.+++...         +..+...|++++|+..|++++..+|+++.+++.+|.+|...|+         
T Consensus       255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------  325 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD---------  325 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---------
T ss_pred             hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC---------
Confidence            4467788888888877665         2345567999999999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++.+|++..+++++|.++.
T Consensus       326 -----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          326 -----YKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESE-------AFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             -----HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHH
Confidence                 9999999999999999999999999999999    99999999       6889999999999999999999999


Q ss_pred             HhcCcchH------------------------------Hhhh----------hhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          263 ELSAIVPA------------------------------REKQ----------TIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       263 ~~g~~~~a------------------------------~~~~----------~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      ..|++++|                              +...          |++++|+.+|+++++++|++..+++++|
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  469 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA  469 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999887                              1122          9999999999999999999999999999


Q ss_pred             HHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          303 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  355 (498)
Q Consensus       303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~  355 (498)
                      .+|..+|+                   +.+|..+|+++++++|++........
T Consensus       470 ~~~~~~g~-------------------~~~A~~~~~~al~~~~~~~~~~~~~~  503 (537)
T 3fp2_A          470 QLKLQMEK-------------------IDEAIELFEDSAILARTMDEKLQATT  503 (537)
T ss_dssp             HHHHHTTC-------------------HHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred             HHHHHhcc-------------------HHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence            99999999                   99999999999999999885554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.79  E-value=3.1e-18  Score=161.16  Aligned_cols=170  Identities=23%  Similarity=0.227  Sum_probs=152.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++.+|++..+++.+|.++...|+              +++|+..|+++++++|++..+++++|
T Consensus        33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE--------------LERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    .|++++|+       ..|+++++.+|++..++.++|.++...|++          ++|+..|++++++.|+
T Consensus        99 ~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           99 NVYVV----KEMYKEAK-------DMFEKALRAGMENGDLFYMLGTVLVKLEQP----------KLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHTCCSHHHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCTT
T ss_pred             HHHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCc
Confidence            99999    99999999       689999999999999999999999999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +..+++++|.++...|+                   +.+|..+|.+++.+.|++......+..+
T Consensus       158 ~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~~~la~~  202 (243)
T 2q7f_A          158 DTEARFQFGMCLANEGM-------------------LDEALSQFAAVTEQDPGHADAFYNAGVT  202 (243)
T ss_dssp             CHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            99999999999999998                   8999999999999999988655444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=1.3e-17  Score=165.60  Aligned_cols=186  Identities=17%  Similarity=0.105  Sum_probs=170.8

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..+++++|+..+.+++...          +..+...|++++|+..|+++++++|++..+++.+|.++...|+        
T Consensus        15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------   86 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------   86 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC--------
Confidence            3477888888888877665          3456778999999999999999999999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864          182 PSKDALLEEACKKYDEATRLCP---TLHDAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL  246 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p---~~~~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l  246 (498)
                            +++|+..|+++++++|   ++..++..+            |.++..    .|++++|+       ..|+++++.
T Consensus        87 ------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~  149 (359)
T 3ieg_A           87 ------LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAI-------TFLDKILEV  149 (359)
T ss_dssp             ------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHh
Confidence                  9999999999999999   888898888            577777    99999999       689999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCCh
Q 010864          247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP  326 (498)
Q Consensus       247 ~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~  326 (498)
                      +|++..++.++|.++...|++          ++|+..|++++++.|+++.+++++|.++...|+                
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------------  203 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKSDNTEAFYKISTLYYQLGD----------------  203 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC----------------
T ss_pred             CCCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------
Confidence            999999999999999999999          999999999999999999999999999999999                


Q ss_pred             hHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          327 NELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       327 ~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                         +.+|..+|++++++.|++....
T Consensus       204 ---~~~A~~~~~~a~~~~~~~~~~~  225 (359)
T 3ieg_A          204 ---HELSLSEVRECLKLDQDHKRCF  225 (359)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ---HHHHHHHHHHHHhhCccchHHH
Confidence               9999999999999999988543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.79  E-value=1.3e-19  Score=160.48  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=122.4

Q ss_pred             HHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       163 ~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      .||.++...|+              +++|+..|++++..+|+++.+++++|.+|..    +|++++|+       .+|++
T Consensus         2 ~LG~~~~~~~~--------------~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~-------~~~~~   56 (150)
T 4ga2_A            2 PLGSMRRSKAD--------------VERYIASVQGSTPSPRQKSIKGFYFAKLYYE----AKEYDLAK-------KYICT   56 (150)
T ss_dssp             -----CCCHHH--------------HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH----TTCHHHHH-------HHHHH
T ss_pred             HhHHHHHHcCh--------------HHHHHHHHHHhcccCcccHHHHHHHHHHHHH----cCCHHHHH-------HHHHH
Confidence            35666666666              9999999999999999999999999999999    99999999       69999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCC
Q 010864          243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR  322 (498)
Q Consensus       243 Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~  322 (498)
                      +++++|+++.+|+++|.+|..+|++          ++|+.+|+++++++|+++.+++++|.+|..+|+            
T Consensus        57 al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------  114 (150)
T 4ga2_A           57 YINVQERDPKAHRFLGLLYELEENT----------DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV------------  114 (150)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------
Confidence            9999999999999999999999999          999999999999999999999999999999998            


Q ss_pred             CCChhHHHHHHHHH-HHHHHhcCCCHHHHHHHH
Q 010864          323 EVSPNELYSQSAIY-IAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       323 ~~~~~~~~~~A~~~-~~~Al~l~p~~~~~~~~l  354 (498)
                             +.+++.+ ++++++++|+++......
T Consensus       115 -------~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A          115 -------TDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             -------SSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence                   6666654 599999999999654443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=2.8e-17  Score=161.33  Aligned_cols=177  Identities=17%  Similarity=0.125  Sum_probs=164.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++.+|.++...|+              +++|+..|+++++++|++..+++++|
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la   96 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLDPKDIAVHAALA   96 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence            4668999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCCH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNSP  251 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------Al~~~~~Al~l~P~~~  251 (498)
                      .++..    .|++++|+..|++                                          |+..|+++++.+|++.
T Consensus        97 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  172 (327)
T 3cv0_A           97 VSHTN----EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA  172 (327)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH
Confidence            99999    9999999876644                                          5566899999999999


Q ss_pred             HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864          252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS  331 (498)
Q Consensus       252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  331 (498)
                      .+++++|.++...|++          ++|+.+|+++++++|++..+++++|.++...|+                   +.
T Consensus       173 ~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~  223 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNY----------DSAAANLRRAVELRPDDAQLWNKLGATLANGNR-------------------PQ  223 (327)
T ss_dssp             HHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HH
T ss_pred             HHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-------------------HH
Confidence            9999999999999999          999999999999999999999999999999999                   99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          332 QSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       332 ~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +|..+|++++++.|++......+..+
T Consensus       224 ~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          224 EALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999988655555444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=1.4e-18  Score=170.93  Aligned_cols=178  Identities=9%  Similarity=0.060  Sum_probs=151.2

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE------DYDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      +++++|...+.+++..    +..+|++++|+.+|.+++++.+.      .+.+|.++|.+|..+|+              
T Consensus        31 ~~~~~A~~~~~~a~~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------   92 (292)
T 1qqe_A           31 YKFEEAADLCVQAATI----YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------------   92 (292)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             ccHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------------
Confidence            4589999999998776    77899999999999999998532      26789999999999999              


Q ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCC------HHHH
Q 010864          188 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS------PQAL  254 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~l~P~~------~~a~  254 (498)
                      +++|+.+|++|+++.+..      +.++.++|.+|..    . |++++|+.       +|++|+++.|.+      ..++
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~-------~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAID-------CYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHH-------HHHHHHHHHHhCCChHHHHHHH
Confidence            999999999999997753      5689999999999    8 99999995       555555555433      5789


Q ss_pred             HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864          255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  327 (498)
Q Consensus       255 ~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~-------a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~  327 (498)
                      +++|.+|..+|++          ++|+.+|++++++.|++..       +++++|.++..+|+                 
T Consensus       162 ~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------------  214 (292)
T 1qqe_A          162 IKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-----------------  214 (292)
T ss_dssp             HHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-----------------
Confidence            9999999999999          9999999999999988653       68999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHH
Q 010864          328 ELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       328 ~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                        +..|..+|+++++++|++..
T Consensus       215 --~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          215 --AVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             --HHHHHHHHHGGGCC------
T ss_pred             --HHHHHHHHHHHHhhCCCCCC
Confidence              99999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=1.4e-17  Score=171.99  Aligned_cols=193  Identities=14%  Similarity=0.115  Sum_probs=174.2

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..+++++|+..+.+++...          +..+...|++++|+..|+++++.+|+++.+|+.+|.+|...|+        
T Consensus       155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  226 (450)
T 2y4t_A          155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD--------  226 (450)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            4577888888888877654          3456778999999999999999999999999999999999999        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                            +++|+..|++++.++|++..++..+            |.++..    .|++++|+       ..|+++++++|+
T Consensus       227 ------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~-------~~~~~~l~~~p~  289 (450)
T 2y4t_A          227 ------HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDAT-------SKYESVMKTEPS  289 (450)
T ss_dssp             ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCCS
T ss_pred             ------HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCc
Confidence                  9999999999999999999988777            888988    99999999       688999999999


Q ss_pred             CH----HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCC
Q 010864          250 SP----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS  325 (498)
Q Consensus       250 ~~----~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~  325 (498)
                      ++    .++.++|.++.+.|++          ++|+..|+++++++|+++.+++++|.+|...|+               
T Consensus       290 ~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---------------  344 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSKDEKP----------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---------------  344 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---------------
T ss_pred             chHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---------------
Confidence            84    4899999999999999          999999999999999999999999999999999               


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          326 PNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       326 ~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                          +.+|..+|+++++++|++......+..+.
T Consensus       345 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          345 ----YDEAIQDYETAQEHNENDQQIREGLEKAQ  373 (450)
T ss_dssp             ----HHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence                99999999999999999997766666543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=1.9e-17  Score=177.36  Aligned_cols=188  Identities=12%  Similarity=0.070  Sum_probs=140.5

Q ss_pred             hcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          114 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      +++++|...+.++....          ..++.+.|++++|+..|+++++.+|++..+|+.+|.+|...|+          
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------  456 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN----------  456 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC----------
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC----------
Confidence            45555555555544322          2234445566666666666666666556666666666666665          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc------CCCC-HHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL------NWNS-PQALNN  256 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l------~P~~-~~a~~~  256 (498)
                          +++|++.|+++++++|++..+|+++|.+|..    .|++++|+       ..|+++++.      +|++ ..+|++
T Consensus       457 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~p~~~~~~~~~  521 (597)
T 2xpi_A          457 ----ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAI-------NHFQNALLLVKKTQSNEKPWAATWAN  521 (597)
T ss_dssp             ----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhhhccccchhhHHHHHHH
Confidence                7777777777777777776777777777766    77777766       566666666      6765 899999


Q ss_pred             HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHH
Q 010864          257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY  336 (498)
Q Consensus       257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~  336 (498)
                      +|.+|...|++          ++|+..|+++++++|+++.+++.+|.+|...|+                   +.+|..+
T Consensus       522 l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-------------------~~~A~~~  572 (597)
T 2xpi_A          522 LGHAYRKLKMY----------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKI-------------------PGLAITH  572 (597)
T ss_dssp             HHHHHHHTTCH----------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-------------------HHHHHHH
T ss_pred             HHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-------------------HHHHHHH
Confidence            99999999999          999999999999999999999999999999999                   9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHH
Q 010864          337 IAAAHALKPSYSVYSSALR  355 (498)
Q Consensus       337 ~~~Al~l~p~~~~~~~~l~  355 (498)
                      |+++++++|++......+.
T Consensus       573 ~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          573 LHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHH
Confidence            9999999999986655544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=6.2e-18  Score=162.71  Aligned_cols=187  Identities=13%  Similarity=0.078  Sum_probs=154.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HD  207 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~  207 (498)
                      +...|++++|+..|++++..+|++   +.+++.+|.+|+.+|+              +++|+..|+++++++|++   ..
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------------YLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHCCCCchhHH
Confidence            467899999999999999999999   9999999999999999              999999999999998854   67


Q ss_pred             HHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhcC
Q 010864          208 AFYNWAIAISDR----AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSA  266 (498)
Q Consensus       208 a~~~lg~~~~~~----~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g~  266 (498)
                      +++++|.++...    ++.+|++++|+       ..|+++++.+|++..+.                 +++|.+|..+|+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAI-------EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHH-------HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHH-------HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            899999998651    00035555555       79999999999986666                 889999999999


Q ss_pred             cchHHhhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          267 IVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      +          ++|+..|+++++..|+   ...+++++|.+|..+|.....         ......+.+|..+|+++++.
T Consensus       164 ~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~---------~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          164 Y----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVR---------ARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             H----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCG---------GGHHHHHHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchh---------hcccchHHHHHHHHHHHHHH
Confidence            9          9999999999999998   568999999999998541000         00123389999999999999


Q ss_pred             CCCHHHHHHHHHHHHcc
Q 010864          344 KPSYSVYSSALRLVRSM  360 (498)
Q Consensus       344 ~p~~~~~~~~l~~~~~~  360 (498)
                      .|++..+..+...+..+
T Consensus       225 ~p~~~~~~~a~~~l~~~  241 (261)
T 3qky_A          225 FPDSPLLRTAEELYTRA  241 (261)
T ss_dssp             CTTCTHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHH
Confidence            99998766666655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.78  E-value=4.6e-18  Score=163.29  Aligned_cols=169  Identities=15%  Similarity=0.087  Sum_probs=149.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----HHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDA  208 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----~~a  208 (498)
                      .+...|++++|+..|+++++.+|+++.+++.+|.+|...|+              +++|+..|+++++ .|.+    ..+
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~-~~~~~~~~~~~   76 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK--------------YDLAQKDIETYFS-KVNATKAKSAD   76 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHh-ccCchhHHHHH
Confidence            35678999999999999999999999999999999999999              9999999999999 4433    556


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      ++++|.++..    +|++++|+       ..|+++++++|++..++.++|.+|..+|++          ++|+.+|++++
T Consensus        77 ~~~lg~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al  135 (272)
T 3u4t_A           77 FEYYGKILMK----KGQDSLAI-------QQYQAAVDRDTTRLDMYGQIGSYFYNKGNF----------PLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHGGGC
T ss_pred             HHHHHHHHHH----cccHHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHh
Confidence            9999999999    99999999       689999999999999999999999999999          99999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +++|++..+++++|..++..++                   +.+|..+|+++++++|++......+..
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~a~~~~p~~~~~~~~~~~  184 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKE-------------------YVKADSSFVKVLELKPNIYIGYLWRAR  184 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            9999999999999944444445                   899999999999999998744443333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=2.5e-17  Score=170.04  Aligned_cols=187  Identities=17%  Similarity=0.119  Sum_probs=169.3

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      .+++++|+..|.+++...          +..+...|++++|+..|+++++++|++..+++.+|.+|..+|+         
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---------  109 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK---------  109 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---------
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---------
Confidence            467888888888777654          3456788999999999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010864          183 SKDALLEEACKKYDEATRLCPTLH---DAFYNW------------AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN  247 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~l------------g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~  247 (498)
                           +++|+..|+++++++|++.   .++..+            |.++..    .|++++|+       ..|+++++.+
T Consensus       110 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~  173 (450)
T 2y4t_A          110 -----LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAI-------AFLDKILEVC  173 (450)
T ss_dssp             -----HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhC
Confidence                 9999999999999999988   777666            555777    88888888       6889999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864          248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  327 (498)
Q Consensus       248 P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~  327 (498)
                      |++..+++++|.+|...|++          ++|+..|+++++++|++..+++++|.+|...|+                 
T Consensus       174 ~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------  226 (450)
T 2y4t_A          174 VWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-----------------  226 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-----------------
T ss_pred             CCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------------
Confidence            99999999999999999999          999999999999999999999999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          328 ELYSQSAIYIAAAHALKPSYSVYSSA  353 (498)
Q Consensus       328 ~~~~~A~~~~~~Al~l~p~~~~~~~~  353 (498)
                        +.+|..+|++++.++|++......
T Consensus       227 --~~~A~~~~~~~~~~~p~~~~~~~~  250 (450)
T 2y4t_A          227 --HELSLSEVRECLKLDQDHKRCFAH  250 (450)
T ss_dssp             --HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCChHHHHHH
Confidence              999999999999999998855443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=2.3e-17  Score=162.56  Aligned_cols=183  Identities=10%  Similarity=0.013  Sum_probs=143.5

Q ss_pred             hcHHHHHHHHHHhhhcc------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          114 EQNNAAMELINSVTGVD------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ++.++|+..+.+++...            +..+...|++++|+..|++     |++.+++..+|.+|..+|+        
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~--------  145 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDR--------  145 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC--------
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC--------
Confidence            45566666666654321            2345567888888888777     7778888888888888888        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            +++|++.|+++++++|++...  +++.++...+...|++++|+       ..|+++++.+|+++.+++++|.++
T Consensus       146 ------~~~A~~~l~~~~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~-------~~~~~~l~~~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          146 ------LDLARKELKKMQDQDEDATLT--QLATAWVSLAAGGEKLQDAY-------YIFQEMADKCSPTLLLLNGQAACH  210 (291)
T ss_dssp             ------HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCTTHHHHHH-------HHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHhCchHHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHH
Confidence                  888888888888888887533  33333332111146777777       799999999999999999999999


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHH-HHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ-SAIYIAAA  340 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~A  340 (498)
                      ..+|++          ++|+..|+++++++|+++.+++|+|.++..+|+                   +.+ +..+++++
T Consensus       211 ~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-------------------~~eaa~~~~~~~  261 (291)
T 3mkr_A          211 MAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-------------------PPEVTNRYLSQL  261 (291)
T ss_dssp             HHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHH
T ss_pred             HHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHH
Confidence            999999          999999999999999999999999999999998                   444 67899999


Q ss_pred             HhcCCCHHHHHHH
Q 010864          341 HALKPSYSVYSSA  353 (498)
Q Consensus       341 l~l~p~~~~~~~~  353 (498)
                      ++++|+++.....
T Consensus       262 ~~~~P~~~~~~d~  274 (291)
T 3mkr_A          262 KDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHCTTCHHHHHH
T ss_pred             HHhCCCChHHHHH
Confidence            9999999955543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.78  E-value=3e-18  Score=180.54  Aligned_cols=167  Identities=14%  Similarity=0.100  Sum_probs=152.0

Q ss_pred             hhhcH-HHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------
Q 010864          112 LAEQN-NAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES---------  171 (498)
Q Consensus       112 ~~~~~-~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---------  171 (498)
                      ..+++ ++|+..+.+++..+          +..+..+|++++|+.+|+++++++|+ ..+++++|.+|..+         
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            34778 99999999988776          34577889999999999999999999 79999999999998         


Q ss_pred             cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHhcC
Q 010864          172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR----GRTKEAEELWKQATKNYEKAVQLN  247 (498)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~----g~~~eA~~~~~~Al~~~~~Al~l~  247 (498)
                      |+              +++|+..|+++++++|++..+|+++|.+|..+++..    |++++|+       ..|+++++++
T Consensus       193 g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~-------~~~~~al~~~  251 (474)
T 4abn_A          193 RH--------------VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL-------SAYAQAEKVD  251 (474)
T ss_dssp             HH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-------HHHHHHHHHC
T ss_pred             hh--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH-------HHHHHHHHhC
Confidence            77              999999999999999999999999999999922222    5566666       7999999999


Q ss_pred             C---CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          248 W---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       248 P---~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      |   +++.+|+++|.+|..+|++          ++|+.+|+++++++|++..++.+++.++..+|+
T Consensus       252 p~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          252 RKASSNPDLHLNRATLHKYEESY----------GEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             GGGGGCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9   9999999999999999999          999999999999999999999999999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.77  E-value=7.9e-17  Score=154.44  Aligned_cols=191  Identities=16%  Similarity=0.158  Sum_probs=156.2

Q ss_pred             hhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCC
Q 010864          113 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD  178 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~  178 (498)
                      .+++++|+..+.+++...              +..+...|++++|+.+|++++.++|+++.+++.+|.+|...|+     
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-----   92 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-----   92 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-----
Confidence            366677777777666541              3346678999999999999999999999999999999999999     


Q ss_pred             CCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       179 ~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                               +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++++|++......++
T Consensus        93 ---------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A           93 ---------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQ-------DDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             ---------HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCCCChHHHHHHH
Confidence                     9999999999999999999999999999999    99999999       688888889999987776666


Q ss_pred             HHHHHhcCcchHH-----------------------hhhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcchh
Q 010864          259 LALQELSAIVPAR-----------------------EKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       259 ~~l~~~g~~~~a~-----------------------~~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~Lg~~~~~~g~~  311 (498)
                      .+ ...|++++|.                       ...++.++|+..++++++..|.    +..+++++|.+|..+|+ 
T Consensus       153 ~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-  230 (275)
T 1xnf_A          153 LA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-  230 (275)
T ss_dssp             HH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-
Confidence            54 5568884441                       1123345566666666655543    36888999999999998 


Q ss_pred             HHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                                        +.+|..+|++++.++|++.
T Consensus       231 ------------------~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          231 ------------------LDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             ------------------HHHHHHHHHHHHTTCCTTC
T ss_pred             ------------------HHHHHHHHHHHHhCCchhH
Confidence                              8999999999999999765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.77  E-value=2e-18  Score=189.96  Aligned_cols=163  Identities=14%  Similarity=0.043  Sum_probs=149.0

Q ss_pred             hhhcHHHHHHHHHHhh--------hcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 010864          112 LAEQNNAAMELINSVT--------GVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD  173 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~--------~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~  173 (498)
                      ..+++++|+..+.+++        ...          +..+..+|++++|+..|+++++++|+++.+|+++|.+|..+|+
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  482 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD  482 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence            3477889999998887        333          3456788999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010864          174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA  253 (498)
Q Consensus       174 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a  253 (498)
                                    +++|+..|+++++++|++..+++++|.++..    +|++++ +       ..|+++++++|++..+
T Consensus       483 --------------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~-------~~~~~al~~~P~~~~a  536 (681)
T 2pzi_A          483 --------------YDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-H-------KFYQTVWSTNDGVISA  536 (681)
T ss_dssp             --------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-T-------CHHHHHHHHCTTCHHH
T ss_pred             --------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-H-------HHHHHHHHhCCchHHH
Confidence                          9999999999999999999999999999999    999999 8       6999999999999999


Q ss_pred             HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      ++++|.+|..+|++          ++|+..|+++++++|++..+++++|.+|...+.
T Consensus       537 ~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          537 AFGLARARSAEGDR----------VGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHHTTCH----------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999          999999999999999999999999999977553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.77  E-value=2.6e-17  Score=161.77  Aligned_cols=179  Identities=14%  Similarity=0.057  Sum_probs=121.3

Q ss_pred             hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CcCCCCCCC
Q 010864          113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTS  181 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~~~~~~  181 (498)
                      .+++++|..++.+++...          ...+...|++++|+..|+++++.+|+++.+|+.+|.++...| +        
T Consensus        35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------  106 (330)
T 3hym_B           35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK--------  106 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC--------
T ss_pred             cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh--------
Confidence            366666666666665544          223455667777777777777777777777777777777776 6        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++++|++..+++++|.++
T Consensus       107 ------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~  169 (330)
T 3hym_B          107 ------NEHARRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAM-------AAYFTAAQLMKGCHLPMLYIGLEY  169 (330)
T ss_dssp             ------HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhccccHHHHHHHHHHH
Confidence                  6777777777777777776777777777766    67766666       566677777777666677777777


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ...|++          ++|+.+|++++++.|+++.+++++|.++...|+                   +.+|..+|++++
T Consensus       170 ~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~a~  220 (330)
T 3hym_B          170 GLTNNS----------KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-------------------WKTAEKWFLDAL  220 (330)
T ss_dssp             HHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHH
T ss_pred             HHHhhH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-------------------HHHHHHHHHHHH
Confidence            777766          777777777777777777777777777777766                   666676666666


Q ss_pred             hcCC
Q 010864          342 ALKP  345 (498)
Q Consensus       342 ~l~p  345 (498)
                      .+.+
T Consensus       221 ~~~~  224 (330)
T 3hym_B          221 EKIK  224 (330)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            6543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=1.1e-18  Score=155.14  Aligned_cols=130  Identities=12%  Similarity=0.118  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +-.+-..|+++++++|++..+++++|.++..    +|++++|+       ..|++++.++|+++.+|+++|.+|..+|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~   86 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYN----KGRIEEAE-------VFFRFLCIYDFYNVDYIMGLAAIYQIKEQF   86 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence            5555567888999999999999999999999    99999999       699999999999999999999999999999


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                                ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|..+|++++++.|+.
T Consensus        87 ----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-------------------~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           87 ----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-------------------PLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             ----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCCCH
T ss_pred             ----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCH
Confidence                      999999999999999999999999999999999                   999999999999999999


Q ss_pred             HHHHHHHHHH
Q 010864          348 SVYSSALRLV  357 (498)
Q Consensus       348 ~~~~~~l~~~  357 (498)
                      +....+-.++
T Consensus       138 ~~~~~A~~ll  147 (151)
T 3gyz_A          138 KLKIKAQSYL  147 (151)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.77  E-value=2.6e-17  Score=154.75  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      .+.++++++++|.+++..|+              +++|+..|+++++++| .+..+++++|.++..    +|++++|+  
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~--   62 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKN--------------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAA--   62 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             cccCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHH--
Confidence            35678999999999999999              9999999999999999 899999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHH
Q 010864          233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVL  305 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~-------~a~~~Lg~~~  305 (498)
                           ..|+++++++|++..+++++|.+|..+|++          ++|+..|+++++++|+++       .+++++|.++
T Consensus        63 -----~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           63 -----DYFDIAIKKNYNLANAYIGKSAAYRDMKNN----------QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             -----HHHHHHHHTTCSHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhCcchHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence                 699999999999999999999999999999          999999999999999999       6689999999


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHH
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS--YSVYSSALRLV  357 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~~~~~l~~~  357 (498)
                      ..+|+                   +.+|+.+|.++++++|+  +......+..+
T Consensus       128 ~~~~~-------------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A          128 QQAGN-------------------IEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHTTC-------------------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHhcc-------------------HHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            99998                   99999999999999999  77555555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=9e-18  Score=180.45  Aligned_cols=157  Identities=17%  Similarity=0.024  Sum_probs=134.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .|++++|+..|+++++.+|++..+|+++|.+|..+|+              +++|+..|+++++++|++..+++++|.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~   67 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALHPGHPEAVARLGRVR   67 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999              99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      ..    +|++++|+       ..|+++++++|++..+++++|.+|..+|++          ++|+.+|+++++++|++..
T Consensus        68 ~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~  126 (568)
T 2vsy_A           68 WT----QQRHAEAA-------VLLQQASDAAPEHPGIALWLGHALEDAGQA----------EAAAAAYTRAHQLLPEEPY  126 (568)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHH
T ss_pred             HH----CCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHH
Confidence            99    99999999       699999999999999999999999999999          9999999999999999999


Q ss_pred             HHHHHHHHHHHc---chhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          297 AIYNLGTVLYGL---AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       297 a~~~Lg~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      +++++|.++..+   |+                   +.+|..+|+++++.+|++
T Consensus       127 ~~~~l~~~~~~~~~~g~-------------------~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          127 ITAQLLNWRRRLCDWRA-------------------LDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHTTCCTT-------------------HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhhcccc-------------------HHHHHHHHHHHHhcCCcc
Confidence            999999999999   88                   899999999999999985

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=1.6e-18  Score=154.07  Aligned_cols=119  Identities=18%  Similarity=0.066  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010864          142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  221 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~  221 (498)
                      .+-..|+++++++|+++++++++|.+++..|+              +++|+..|++++.++|+++.+|+++|.+|..   
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~---   82 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI---   82 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence            34456888999999999999999999999999              9999999999999999999999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       222 ~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                       +|++++|+       .+|+++++++|+++.+|+++|.+|..+|++          ++|+.+|++++++.|+..
T Consensus        83 -~g~~~~Ai-------~~~~~al~l~P~~~~~~~~lg~~~~~lg~~----------~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           83 -KEQFQQAA-------DLYAVAFALGKNDYTPVFHTGQCQLRLKAP----------LKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             -TTCHHHHH-------HHHHHHHHHSSSCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHH
T ss_pred             -HccHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCHH
Confidence             99999999       799999999999999999999999999999          999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=1e-17  Score=143.85  Aligned_cols=120  Identities=18%  Similarity=0.219  Sum_probs=111.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864          197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                      ++..++|+.+.++.++|.++..    .|++++|+       ..|+++++++|+++.+|+++|.+|..+|++         
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------   63 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFK----KGDYPTAM-------RHYNEAVKRDPENAILYSNRAACLTKLMEF---------   63 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------
T ss_pred             HHHHHCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHhhHHHhhccH---------
Confidence            4556899999999999999999    99999999       699999999999999999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                       ++|+..|+++++++|++..+|+++|.+|..+|+                   +.+|..+|+++++++|++......+..
T Consensus        64 -~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------------------~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           64 -QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-------------------WSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence             999999999999999999999999999999999                   999999999999999999987776653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.2e-16  Score=171.19  Aligned_cols=198  Identities=16%  Similarity=0.184  Sum_probs=133.3

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      ..+++++|..++.++....          ..++...|++++|+..|++++..+|++..+++.+|.+|...|+        
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  388 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--------  388 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC--------
T ss_pred             HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc--------
Confidence            4456666666666554322          3334455555555555555555555555555555555555555        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK---------------------------  234 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~---------------------------  234 (498)
                            +++|+..|+++++++|++..+|+.+|.+|..    .|++++|++.|+                           
T Consensus       389 ------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  458 (597)
T 2xpi_A          389 ------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL  458 (597)
T ss_dssp             ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence                  5555555555555555555555555555555    555555553321                           


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHH
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL------QFDF-HRAIYNLGTVLYG  307 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l------~P~~-~~a~~~Lg~~~~~  307 (498)
                      +|+..|+++++.+|+++.+++++|.+|.+.|++          ++|+..|++++++      +|++ ..+++++|.+|..
T Consensus       459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            133577777777777777777777777777777          9999999999999      6665 8899999999999


Q ss_pred             cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       308 ~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      .|+                   +.+|..+|+++++++|++......+..
T Consensus       529 ~g~-------------------~~~A~~~~~~~~~~~p~~~~~~~~l~~  558 (597)
T 2xpi_A          529 LKM-------------------YDAAIDALNQGLLLSTNDANVHTAIAL  558 (597)
T ss_dssp             TTC-------------------HHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             hcC-------------------HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999                   999999999999999998855544443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=4.9e-17  Score=171.53  Aligned_cols=187  Identities=20%  Similarity=0.189  Sum_probs=150.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|+++.+|+++|.+|..+|+              +++|+..|+++++++|++..+++.+|
T Consensus        35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la  100 (537)
T 3fp2_A           35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD--------------LEKVIEFTTKALEIKPDHSKALLRRA  100 (537)
T ss_dssp             HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            5779999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHH--------------------------------------------------------------
Q 010864          214 IAISDRAKMRGRTKEAEE--------------------------------------------------------------  231 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~--------------------------------------------------------------  231 (498)
                      .++..    +|++++|+.                                                              
T Consensus       101 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          101 SANES----LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHH----HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHH----cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            99999    999999975                                                              


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHh
Q 010864          232 ----------------------------------------LWKQATKNYEKAVQLNWNSPQ-------ALNNWGLALQEL  264 (498)
Q Consensus       232 ----------------------------------------~~~~Al~~~~~Al~l~P~~~~-------a~~~lg~~l~~~  264 (498)
                                                              .|++|+..|+++++.+|++..       +++.+|.++...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~  256 (537)
T 3fp2_A          177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK  256 (537)
T ss_dssp             HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence                                                    456788899999999999866       467777777777


Q ss_pred             cCcchH-----------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCC
Q 010864          265 SAIVPA-----------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP  321 (498)
Q Consensus       265 g~~~~a-----------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~  321 (498)
                      |++++|                       +...|++++|+.+|+++++++|+++.+++++|.++...|+           
T Consensus       257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------  325 (537)
T 3fp2_A          257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-----------  325 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-----------
Confidence            787555                       1235666777777777777777777777777777777776           


Q ss_pred             CCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          322 REVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       322 ~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                              +.+|..+|.+++.++|++......+..+
T Consensus       326 --------~~~A~~~~~~a~~~~~~~~~~~~~la~~  353 (537)
T 3fp2_A          326 --------YKNAKEDFQKAQSLNPENVYPYIQLACL  353 (537)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                    7778888888888877776444444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.74  E-value=8.7e-18  Score=152.20  Aligned_cols=155  Identities=10%  Similarity=-0.052  Sum_probs=136.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++.+|+++.+++++|.+|...|+              +++|+..|++++.++| +...+..++
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------------FELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------------HHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            5668999999999999999999999999999999999999              9999999999999999 887776666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .+...  . .++..+|+       ..|+++++++|+++.+++++|.++...|++          ++|+..|+++++++|+
T Consensus        81 ~~~~~--~-~~~~~~a~-------~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           81 KLELH--Q-QAAESPEL-------KRLEQELAANPDNFELACELAVQYNQVGRD----------EEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHH--H-HHTSCHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTT
T ss_pred             HHHHH--h-hcccchHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCcc
Confidence            55332  0 22333445       799999999999999999999999999999          9999999999999998


Q ss_pred             C--HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          294 F--HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       294 ~--~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      +  ..++.++|.++..+|+                   ..+|..+|.+++.
T Consensus       141 ~~~~~a~~~l~~~~~~~g~-------------------~~~A~~~y~~al~  172 (176)
T 2r5s_A          141 AQDGEVKKTFMDILSALGQ-------------------GNAIASKYRRQLY  172 (176)
T ss_dssp             TTTTHHHHHHHHHHHHHCS-------------------SCHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHhCC-------------------CCcHHHHHHHHHH
Confidence            6  6699999999999998                   6788888888764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=2e-16  Score=164.62  Aligned_cols=201  Identities=12%  Similarity=-0.005  Sum_probs=167.1

Q ss_pred             hhhhcHHHHHHHHHHhhhcc-------------------hhhHHhhccHHHHHHHHHHHHHhC--------CCCHHHHHH
Q 010864          111 QLAEQNNAAMELINSVTGVD-------------------EEGRSRQRILTFAAKRYANAIERN--------PEDYDALYN  163 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~-------------------~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~  163 (498)
                      ...|++++|+..+.+++.+.                   +..+..+|++++|+.+|++++++.        +..+.++.+
T Consensus        62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~  141 (472)
T 4g1t_A           62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE  141 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence            34578888988888876542                   234677899999999999999873        467899999


Q ss_pred             HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864          164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  243 (498)
Q Consensus       164 lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A  243 (498)
                      +|.++...|.            ++|++|+.+|+++++++|+++.+++++|.++.. ....+++++|+       ..|+++
T Consensus       142 ~g~~~~~~~~------------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~~~al-------~~~~~a  201 (472)
T 4g1t_A          142 EGWTRLKCGG------------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPSQNAI-------DPLRQA  201 (472)
T ss_dssp             HHHHHHHHCT------------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCCCCTH-------HHHHHH
T ss_pred             HHHHHHHHcc------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHHHHHH-------HHHHHH
Confidence            9999888764            349999999999999999999999999998654 11257777777       689999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010864          244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  323 (498)
Q Consensus       244 l~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~  323 (498)
                      ++++|++..++.++|..+..+++.      .+++++|+.+|++++.++|++..+++++|.+|...|+             
T Consensus       202 l~l~p~~~~~~~~l~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-------------  262 (472)
T 4g1t_A          202 IRLNPDNQYLKVLLALKLHKMREE------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-------------  262 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-------------
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-------------
Confidence            999999999999999988876544      3445899999999999999999999999999999999             


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       324 ~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                            +..|..+|.++++++|++......+..
T Consensus       263 ------~~~A~~~~~~al~~~p~~~~~~~~lg~  289 (472)
T 4g1t_A          263 ------PDKAIELLKKALEYIPNNAYLHCQIGC  289 (472)
T ss_dssp             ------HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence                  999999999999999999866555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.73  E-value=1.2e-16  Score=150.64  Aligned_cols=168  Identities=15%  Similarity=0.067  Sum_probs=143.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD---  207 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~---  207 (498)
                      +...|++++|+..|++++..+|++   ..+++.+|.+|..+|+              +++|+..|+++++++|++..   
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~P~~~~~~~   79 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDY   79 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCcHHH
Confidence            567899999999999999999987   4799999999999999              99999999999999999764   


Q ss_pred             HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHH
Q 010864          208 AFYNWAIAISDRAKMRG-----------RTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGL  259 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g-----------~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~-----------------~~lg~  259 (498)
                      +++.+|.++..    +|           ....-...+++|+..|+++++.+|++..++                 ..+|.
T Consensus        80 a~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~  155 (225)
T 2yhc_A           80 VMYMRGLTNMA----LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE  155 (225)
T ss_dssp             HHHHHHHHHHH----HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999976    32           111112344555589999999999987554                 56788


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHH
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY  336 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~  336 (498)
                      +|...|++          ++|+..|+++++..|+++   .+++.+|.+|..+|+                   +.+|..+
T Consensus       156 ~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-------------------~~~A~~~  206 (225)
T 2yhc_A          156 YYTERGAW----------VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-------------------NAQAEKV  206 (225)
T ss_dssp             HHHHHTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-------------------HHHHHHH
T ss_pred             HHHHcCcH----------HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-------------------cHHHHHH
Confidence            88888888          999999999999999986   789999999999999                   8999999


Q ss_pred             HHHHHhcCCCHH
Q 010864          337 IAAAHALKPSYS  348 (498)
Q Consensus       337 ~~~Al~l~p~~~  348 (498)
                      ++++....|+..
T Consensus       207 ~~~l~~~~~~~~  218 (225)
T 2yhc_A          207 AKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHCCSCCC
T ss_pred             HHHHHhhCCCch
Confidence            999998888754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=5.6e-17  Score=168.78  Aligned_cols=173  Identities=15%  Similarity=0.071  Sum_probs=142.3

Q ss_pred             hhhhcHHHHHHHHHHhhhcch----------------h--hH--HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864          111 QLAEQNNAAMELINSVTGVDE----------------E--GR--SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE  170 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~~----------------~--~~--~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  170 (498)
                      ...+++++|...+.++..+..                .  ++  ...++|++|+.+|+++++++|++++++..+|.++..
T Consensus       105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~  184 (472)
T 4g1t_A          105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR  184 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            345788899888888766531                1  12  224689999999999999999999999999999776


Q ss_pred             hcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      ++..           +.+++|++.|+++++++|++..++.++|..+.......|++++|+       ..|++++..+|++
T Consensus       185 l~~~-----------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~-------~~~~~al~~~~~~  246 (472)
T 4g1t_A          185 LDNW-----------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE-------KLVEEALEKAPGV  246 (472)
T ss_dssp             HHHS-----------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHH-------HHHHHHHHHCSSC
T ss_pred             hcCc-----------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHhCccH
Confidence            5430           117889999999999999999999999999887222244555666       7999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      ..+++++|.+|...|++          ++|+..|+++++++|+++.+++++|.+|...+..
T Consensus       247 ~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~  297 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEP----------DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ  297 (472)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999          9999999999999999999999999999876543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.6e-17  Score=171.19  Aligned_cols=170  Identities=16%  Similarity=0.156  Sum_probs=136.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++.++|++..++..+|.+|...|+              +++|+..|+++++++|++..+++++|
T Consensus       314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la  379 (514)
T 2gw1_A          314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--------------FDDCETLFSEAKRKFPEAPEVPNFFA  379 (514)
T ss_dssp             HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcccCHHHHHHHH
Confidence            3445556666666666666666666666666666666665              77777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---hcCcchHHhhhhhHHHHHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ------ALNNWGLALQE---LSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~------a~~~lg~~l~~---~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      .++..    .|++++|+       ..|++++..+|++..      +++++|.++..   .|++          ++|+..|
T Consensus       380 ~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~A~~~~  438 (514)
T 2gw1_A          380 EILTD----KNDFDKAL-------KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF----------IEATNLL  438 (514)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH----------HHHHHHH
T ss_pred             HHHHH----CCCHHHHH-------HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH----------HHHHHHH
Confidence            77777    77777777       688888888888754      99999999999   9999          9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       285 ~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +++++++|++..+++++|.+|...|+                   +.+|..+|+++++++|++......+...
T Consensus       439 ~~a~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          439 EKASKLDPRSEQAKIGLAQMKLQQED-------------------IDEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            99999999999999999999999999                   9999999999999999999666655443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=1.2e-17  Score=167.97  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----------
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------  205 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----------  205 (498)
                      .++++++|+..|++++..+|+++.+++++|.+|+.+|+              |++|+..|++++.++|++          
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~  190 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQK  190 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHhhccccCChHHHHH
Confidence            46778889999999999999999999999999999999              999999999999999998          


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       206 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                           ..+|+++|.+|..    +|++++|+       .+|+++++++|++..+++++|.+|..+|++          ++|
T Consensus       191 ~~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A  249 (336)
T 1p5q_A          191 AQALRLASHLNLAMCHLK----LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELA  249 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             HHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHH
Confidence                 7999999999999    99999999       699999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +.+|+++++++|++..+++++|.++..+|+
T Consensus       250 ~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          250 RADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=1.8e-17  Score=146.43  Aligned_cols=126  Identities=16%  Similarity=0.078  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010864          144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       144 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~  223 (498)
                      -..|++++.++|++..+++++|.++...|+              +++|+..|++++.++|++..+|+++|.++..    +
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~   68 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGX--------------YEDAHXVFQALCVLDHYDSRFFLGLGACRQA----M   68 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----H
Confidence            356899999999999999999999999999              9999999999999999999999999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      |++++|+       ..|++++.++|+++.+++++|.+|..+|++          ++|+.+|+++++++|+++.....+..
T Consensus        69 g~~~~A~-------~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           69 GQYDLAI-------HSYSYGAVMDIXEPRFPFHAAECLLQXGEL----------AEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             TCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             hhHHHHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            9999999       699999999999999999999999999999          99999999999999988765444443


Q ss_pred             H
Q 010864          304 V  304 (498)
Q Consensus       304 ~  304 (498)
                      +
T Consensus       132 ~  132 (148)
T 2vgx_A          132 V  132 (148)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=5.1e-17  Score=159.51  Aligned_cols=155  Identities=10%  Similarity=-0.021  Sum_probs=144.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|+++++.+|+++.+++++|.+|..+|+              +++|+..|++++..+|+....+.+.+
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------------SEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------------HHHHHHHHHhCchhhcchHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999998887888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      ..+..    .++..+|+       ..|+++++.+|+++.+++++|.+|...|++          ++|+..|+++++++|+
T Consensus       193 ~~l~~----~~~~~~a~-------~~l~~al~~~P~~~~~~~~la~~l~~~g~~----------~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          193 IELLX----QAADTPEI-------QQLQQQVAENPEDAALATQLALQLHQVGRN----------EEALELLFGHLRXDLT  251 (287)
T ss_dssp             HHHHH----HHTSCHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTT
T ss_pred             HHHHh----hcccCccH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcccc
Confidence            88888    88888888       699999999999999999999999999999          9999999999999999


Q ss_pred             C--HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          294 F--HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       294 ~--~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      +  ..++.+||.++..+|+                   ...+...|.+++.
T Consensus       252 ~~~~~a~~~l~~~~~~~g~-------------------~~~a~~~~r~al~  283 (287)
T 3qou_A          252 AADGQTRXTFQEILAALGT-------------------GDALASXYRRQLY  283 (287)
T ss_dssp             GGGGHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcCC-------------------CCcHHHHHHHHHH
Confidence            9  8999999999999998                   6677777777764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.71  E-value=2.1e-16  Score=147.31  Aligned_cols=139  Identities=16%  Similarity=0.102  Sum_probs=123.1

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN----------------WAIAISDR  219 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~----------------lg~~~~~~  219 (498)
                      ..++.++..|..+...|+              +++|+..|+++++++|++..+|++                +|.+|.. 
T Consensus         2 ~~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-   66 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-   66 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-
Confidence            357788999999999999              999999999999999999999999                9999999 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY  299 (498)
Q Consensus       220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  299 (498)
                         +|++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+.+|+++++++|+++.+++
T Consensus        67 ---~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~  126 (208)
T 3urz_A           67 ---NRNYDKAY-------LFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANI  126 (208)
T ss_dssp             ---TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ---CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHH
Confidence               99999999       699999999999999999999999999999          9999999999999999999999


Q ss_pred             HHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       300 ~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      ++|.+|+..|+..                 ...+..+|.+++...|.
T Consensus       127 ~lg~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  156 (208)
T 3urz_A          127 FLGNYYYLTAEQE-----------------KKKLETDYKKLSSPTKM  156 (208)
T ss_dssp             HHHHHHHHHHHHH-----------------HHHHHHHHC---CCCHH
T ss_pred             HHHHHHHHHhHHH-----------------HHHHHHHHHHHhCCCch
Confidence            9999999887522                 34566677776654443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=2.9e-16  Score=150.44  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=143.5

Q ss_pred             HhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864          135 SRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY  210 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~  210 (498)
                      ...|++++|+..|+++++.    +|.++.+++.+|.++...|+              +++|+..|+++++++|++..+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~   81 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFN   81 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHcCCCcHHHHH
Confidence            4569999999999999998    35678999999999999999              99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      ++|.++..    .|++++|+       ..|+++++++|++..+++++|.+|..+|++          ++|+.+|++++++
T Consensus        82 ~la~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~  140 (275)
T 1xnf_A           82 YLGIYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAHLNRGIALYYGGRD----------KLAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHH----ccCHHHHH-------HHHHHHHhcCccccHHHHHHHHHHHHhccH----------HHHHHHHHHHHHh
Confidence            99999999    99999999       689999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      .|++......++.+ ...|+                   +.+|..+|.+++...|++.
T Consensus       141 ~~~~~~~~~~~~~~-~~~~~-------------------~~~A~~~~~~~~~~~~~~~  178 (275)
T 1xnf_A          141 DPNDPFRSLWLYLA-EQKLD-------------------EKQAKEVLKQHFEKSDKEQ  178 (275)
T ss_dssp             CTTCHHHHHHHHHH-HHHHC-------------------HHHHHHHHHHHHHHSCCCS
T ss_pred             CCCChHHHHHHHHH-HHhcC-------------------HHHHHHHHHHHHhcCCcch
Confidence            99998777766654 55566                   7788888888888777665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.70  E-value=1.8e-15  Score=149.71  Aligned_cols=194  Identities=9%  Similarity=-0.001  Sum_probs=166.9

Q ss_pred             hhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CcCCCCCCCCchhhhHH
Q 010864          112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLE  189 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~~~~~~~~~~~~~~  189 (498)
                      .+.++..++..+..+...       ....++|+.++.++|.++|++..+|+.+|.++..++  +              ++
T Consensus        28 y~~~y~~~~~~~~a~~~~-------~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~--------------~~   86 (306)
T 3dra_A           28 YDEDYKQIMGLLLALMKA-------EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRN--------------LY   86 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHT-------TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC--------------HH
T ss_pred             eCHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc--------------HH
Confidence            456777777777766544       444578999999999999999999999999999999  7              99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       190 ~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~---g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      +++..+++++.++|++..+|+..+.++.......   +++.+++       ..+.++++.+|++..+|++.+.++..+|.
T Consensus        87 eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL-------~~~~~~l~~~pkny~aW~~R~~vl~~l~~  159 (306)
T 3dra_A           87 DELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF-------DILEAMLSSDPKNHHVWSYRKWLVDTFDL  159 (306)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999993321116   6777777       79999999999999999999999999999


Q ss_pred             cchHHhhhhhHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          267 IVPAREKQTIVR--TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       267 ~~~a~~~~~~~~--~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      +          +  +++.++.++++++|.+..+|++.+.++..+++.             .....+.+++.++.+++.++
T Consensus       160 ~----------~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~-------------~~~~~~~eEl~~~~~aI~~~  216 (306)
T 3dra_A          160 H----------NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL-------------ATDNTIDEELNYVKDKIVKC  216 (306)
T ss_dssp             T----------TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG-------------CCHHHHHHHHHHHHHHHHHC
T ss_pred             c----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc-------------chhhhHHHHHHHHHHHHHhC
Confidence            8          7  999999999999999999999999999988751             12446899999999999999


Q ss_pred             CCHHHHHHHHHH
Q 010864          345 PSYSVYSSALRL  356 (498)
Q Consensus       345 p~~~~~~~~l~~  356 (498)
                      |++......++.
T Consensus       217 p~n~SaW~y~~~  228 (306)
T 3dra_A          217 PQNPSTWNYLLG  228 (306)
T ss_dssp             SSCHHHHHHHHH
T ss_pred             CCCccHHHHHHH
Confidence            999954444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=1.1e-15  Score=150.32  Aligned_cols=166  Identities=7%  Similarity=-0.049  Sum_probs=146.2

Q ss_pred             HHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIER--NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      +...+++++|+..|++.+..  +|+++.+++.+|.+|...|+              +++|++.|++     |++..++.+
T Consensus        75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~--------------~~~Al~~l~~-----~~~~~~~~~  135 (291)
T 3mkr_A           75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN--------------PDAALRTLHQ-----GDSLECMAM  135 (291)
T ss_dssp             HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTT-----CCSHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHhC-----CCCHHHHHH
Confidence            45578999999999999986  69999999999999999999              9999999998     899999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL--ALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~--~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      +|.+|..    +|++++|+       +.|+++++.+|++.......+.  ++...|++          ++|+..|+++++
T Consensus       136 l~~~~~~----~g~~~~A~-------~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~----------~eA~~~~~~~l~  194 (291)
T 3mkr_A          136 TVQILLK----LDRLDLAR-------KELKKMQDQDEDATLTQLATAWVSLAAGGEKL----------QDAYYIFQEMAD  194 (291)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH----------HHHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHH-------HHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH----------HHHHHHHHHHHH
Confidence            9999999    99999999       6889999999998644433332  22233666          999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          290 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       290 l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      ..|+++.+++++|.++..+|+                   +.+|..+|+++++++|++......+..+.
T Consensus       195 ~~p~~~~~~~~la~~~~~~g~-------------------~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          195 KCSPTLLLLNGQAACHMAQGR-------------------WEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999                   99999999999999999997666665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=1.2e-16  Score=156.97  Aligned_cols=185  Identities=15%  Similarity=0.074  Sum_probs=145.2

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQ  169 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~  169 (498)
                      ..+++++|+..+.+++...                +..+..+|++++|+.+|++++++.+..      +.++.++|.+|.
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3456666666666655542                234667899999999999999998754      568999999999


Q ss_pred             Hh-cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          170 ES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       170 ~~-g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      .. |+              +++|+.+|++|+++.|..      ..++.++|.++..    +|++++|+       .+|++
T Consensus       129 ~~lg~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~  183 (292)
T 1qqe_A          129 NDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS-------DIYSK  183 (292)
T ss_dssp             HTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHH
T ss_pred             HhhcC--------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHH-------HHHHH
Confidence            96 99              999999999999998864      5789999999999    99999999       69999


Q ss_pred             HHhcCCCCHH-------HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHcch
Q 010864          243 AVQLNWNSPQ-------ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-----IYNLGTVLYGLAE  310 (498)
Q Consensus       243 Al~l~P~~~~-------a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a-----~~~Lg~~~~~~g~  310 (498)
                      +++++|++..       +++++|.++..+|++          ++|+.+|+++++++|++...     +.+++.++.. ++
T Consensus       184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~-~~  252 (292)
T 1qqe_A          184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE-GD  252 (292)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC---------HHHHHHHHHHHHT-TC
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc-CC
Confidence            9999887643       689999999999999          99999999999999998764     3445555431 11


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                                      .+.+..|+..|.+++.++|.+.
T Consensus       253 ----------------~~~~~~A~~~~~~~~~l~~~~~  274 (292)
T 1qqe_A          253 ----------------SEQLSEHCKEFDNFMRLDKWKI  274 (292)
T ss_dssp             ----------------TTTHHHHHHHHTTSSCCCHHHH
T ss_pred             ----------------HHHHHHHHHHhccCCccHHHHH
Confidence                            1118899999999999999776

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.7e-16  Score=166.08  Aligned_cols=191  Identities=15%  Similarity=0.152  Sum_probs=149.8

Q ss_pred             hhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          113 AEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      .+++++|...+.+++...         +..+...|++++|+..|++++..+|++..+++.+|.+|...|+          
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------  319 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN----------  319 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC----------
T ss_pred             CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC----------
Confidence            355666666666554432         2234456677777777777777777777777777777777777          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                          +++|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++.+|++..+++++|.++..
T Consensus       320 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~  384 (514)
T 2gw1_A          320 ----YDQAGKDFDKAKELDPENIFPYIQLACLAYR----ENKFDDCE-------TLFSEAKRKFPEAPEVPNFFAEILTD  384 (514)
T ss_dssp             ----TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHcccCHHHHHHHHHHHHH
Confidence                7777777777777777777777777777777    77777777       68888888899999999999999999


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHH---cchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR------AIYNLGTVLYG---LAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~------a~~~Lg~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                      .|++          ++|+.+|++++++.|++..      +++++|.++..   .|+                   +.+|.
T Consensus       385 ~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------~~~A~  435 (514)
T 2gw1_A          385 KNDF----------DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-------------------FIEAT  435 (514)
T ss_dssp             TTCH----------HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-------------------HHHHH
T ss_pred             CCCH----------HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-------------------HHHHH
Confidence            9998          9999999999999999865      99999999999   998                   99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHH
Q 010864          335 IYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       335 ~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      .+|++++.++|++......+..+
T Consensus       436 ~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          436 NLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHH
Confidence            99999999999988655544443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.69  E-value=4.4e-17  Score=143.89  Aligned_cols=123  Identities=11%  Similarity=0.153  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 010864          189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV  268 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  268 (498)
                      -.+...|++++.++|++..+++++|.++..    .|++++|+       ..|++++.++|+++.+|+++|.++..+|++ 
T Consensus         4 ~~~~~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-   71 (148)
T 2vgx_A            4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAH-------XVFQALCVLDHYDSRFFLGLGACRQAMGQY-   71 (148)
T ss_dssp             --CCCSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-
T ss_pred             cchhhhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHcCcccHHHHHHHHHHHHHHhhH-
Confidence            334567899999999999999999999999    99999999       699999999999999999999999999999 


Q ss_pred             hHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       269 ~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                               ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|..+|+++++++|+++
T Consensus        72 ---------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           72 ---------DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-------------------LAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             ---------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHTTCG
T ss_pred             ---------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCCC
Confidence                     999999999999999999999999999999999                   9999999999999999876


Q ss_pred             HHH
Q 010864          349 VYS  351 (498)
Q Consensus       349 ~~~  351 (498)
                      .+.
T Consensus       124 ~~~  126 (148)
T 2vgx_A          124 EFX  126 (148)
T ss_dssp             GGH
T ss_pred             cch
Confidence            443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=9e-17  Score=140.26  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=117.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864          145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG  224 (498)
Q Consensus       145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g  224 (498)
                      ..|++++.++|++..+++.+|.++...|+              +++|+..|++++.++|++..+|+++|.++..    +|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g   66 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDARYFLGLGACRQS----LG   66 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----Hh
Confidence            56888999999999999999999999999              9999999999999999999999999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      ++++|+       ..|++++.++|+++.+++++|.+|..+|++          ++|+.+|+++++++|+++........+
T Consensus        67 ~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           67 LYEQAL-------QSYSYGALMDINEPRFPFHAAECHLQLGDL----------DGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             hHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999       699999999999999999999999999999          999999999999999988766655555


Q ss_pred             HHHcc
Q 010864          305 LYGLA  309 (498)
Q Consensus       305 ~~~~g  309 (498)
                      ...++
T Consensus       130 ~~~l~  134 (142)
T 2xcb_A          130 GAMLE  134 (142)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=7.4e-17  Score=143.09  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHHHHcCC
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHD-----AFYNWAIAISDRAKMRGR  225 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-------~~~-----a~~~lg~~~~~~~~~~g~  225 (498)
                      +..+.++|..++..|+              |++|+..|++||+++|+       +..     +|+|+|.++..    +|+
T Consensus        11 a~~~~~~G~~l~~~g~--------------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr   72 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRS   72 (159)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTC
T ss_pred             HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCC
Confidence            5678999999999999              99999999999999999       555     99999999999    999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          226 TKEAEELWKQATKNYEKAVQLNWNSPQAL----NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  301 (498)
Q Consensus       226 ~~eA~~~~~~Al~~~~~Al~l~P~~~~a~----~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~L  301 (498)
                      +++|+..|++|+..|+++++++|++..+|    +++|.+|..+|++          ++|+.+|++|++++|++..+...+
T Consensus        73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999999999999999999    9999999999999          999999999999999988776666


Q ss_pred             HHHHHH
Q 010864          302 GTVLYG  307 (498)
Q Consensus       302 g~~~~~  307 (498)
                      ..+...
T Consensus       143 ~~~~~~  148 (159)
T 2hr2_A          143 ERMMEV  148 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=2.1e-15  Score=149.11  Aligned_cols=153  Identities=12%  Similarity=0.052  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 010864          140 LTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAIS  217 (498)
Q Consensus       140 ~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~-a~~~lg~~~~  217 (498)
                      +++|+..|+++++ ++|++..+|.++|.++...|+              +++|+..|+++++++|++.. +|.++|.++.
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            4999999999999 799999999999999999999              99999999999999999987 9999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      .    .|++++|+       ..|+++++.+|.+..++...+.+... .|++          ++|+..|++++++.|+++.
T Consensus       146 ~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~  204 (308)
T 2ond_A          146 R----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             H----HHCHHHHH-------HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTTCHH
T ss_pred             H----hcCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHH
Confidence            9    99999988       69999999999998888877766443 6888          9999999999999999999


Q ss_pred             HHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc---CCC
Q 010864          297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL---KPS  346 (498)
Q Consensus       297 a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~p~  346 (498)
                      +|.++|.++..+|+                   +.+|..+|++++..   .|+
T Consensus       205 ~~~~~~~~~~~~g~-------------------~~~A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          205 YVLAYIDYLSHLNE-------------------DNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHHHHHHTTCC-------------------HHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhccCCCHH
Confidence            99999999999998                   89999999999995   554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.68  E-value=1.4e-15  Score=146.03  Aligned_cols=173  Identities=17%  Similarity=0.101  Sum_probs=148.0

Q ss_pred             hhcHHHHHHHHHHhhhcc-------------hhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH------
Q 010864          113 AEQNNAAMELINSVTGVD-------------EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQE------  170 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-------------~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~------  170 (498)
                      .+++++|+..|.+++...             +.++..+|++++|+..|+++++++|++   +.+++.+|.++..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            467788888888777653             334678899999999999999998854   6899999999999      


Q ss_pred             --hcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHHHHcCCHHHHHH
Q 010864          171 --SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       171 --~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~-----------------~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                        +|+              +++|+..|+++++.+|++..+.                 +++|.+|..    +|++++|+ 
T Consensus       108 ~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-  168 (261)
T 3qky_A          108 LDQTD--------------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAA-  168 (261)
T ss_dssp             SCCHH--------------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             ccchh--------------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHH-
Confidence              777              9999999999999999986655                 889999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Q 010864          232 LWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVL  305 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~Lg~~~  305 (498)
                            ..|+++++.+|+   ...+++++|.+|..+|....+..+.|++++|+..|+++++..|+++   .+...++.++
T Consensus       169 ------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~  242 (261)
T 3qky_A          169 ------VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR  242 (261)
T ss_dssp             ------HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence                  689999999998   5789999999999997665555566777999999999999999994   5677788888


Q ss_pred             HHcch
Q 010864          306 YGLAE  310 (498)
Q Consensus       306 ~~~g~  310 (498)
                      ..+++
T Consensus       243 ~~~~~  247 (261)
T 3qky_A          243 QRLTE  247 (261)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.68  E-value=5.2e-16  Score=148.51  Aligned_cols=165  Identities=16%  Similarity=0.184  Sum_probs=143.3

Q ss_pred             hHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---
Q 010864          133 GRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---  201 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---  201 (498)
                      .+...|++++|+.+|++++++        +|....++.++|.+|..+|+              +++|+..|++++.+   
T Consensus        52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIREK  117 (283)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHHH
Confidence            467789999999999999988        46678899999999999999              99999999999999   


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864          202 -----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQT  275 (498)
Q Consensus       202 -----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~a~~~~~  275 (498)
                           +|....+++++|.++..    +|++++|+..|++++..+++.... +|....+++++|.+|..+|++        
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------  185 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY--------  185 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH--------
T ss_pred             HcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--------
Confidence                 57778899999999999    999999997666666665544322 566788999999999999999        


Q ss_pred             hHHHHHHHHHHHHHh-------------------------------------------------cCCCHHHHHHHHHHHH
Q 010864          276 IVRTAISKFRAAIQL-------------------------------------------------QFDFHRAIYNLGTVLY  306 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l-------------------------------------------------~P~~~~a~~~Lg~~~~  306 (498)
                        ++|+.+|++++++                                                 .|....++.++|.+|.
T Consensus       186 --~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  263 (283)
T 3edt_B          186 --QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR  263 (283)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence              9999999999986                                                 2455678899999999


Q ss_pred             HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       307 ~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      .+|+                   +.+|..+|++++++.
T Consensus       264 ~~g~-------------------~~~A~~~~~~al~~~  282 (283)
T 3edt_B          264 RQGK-------------------LEAAHTLEDCASRNR  282 (283)
T ss_dssp             HTTC-------------------HHHHHHHHHHHHTTC
T ss_pred             HcCC-------------------HHHHHHHHHHHHHhh
Confidence            9998                   899999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=1.4e-15  Score=150.46  Aligned_cols=170  Identities=14%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------cCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCCCHHHHHHH
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQES-------ADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNW  212 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-------g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~~~~a~~~l  212 (498)
                      ++|+..|++++..+|+++++|+++|.++...       |+       .....+.+++|+..|++|++ ++|++..+|.++
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~-------~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~  105 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD-------MNNAKLFSDEAANIYERAISTLLKKNMLLYFAY  105 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC-------CHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccc-------hhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            7899999999999999999999999999754       55       11112234999999999999 799999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~-a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      |.++..    .|++++|.       ..|+++++++|++.. +|.++|.++.+.|++          ++|+..|++|+++.
T Consensus       106 ~~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~  164 (308)
T 2ond_A          106 ADYEES----RMKYEKVH-------SIYNRLLAIEDIDPTLVYIQYMKFARRAEGI----------KSGRMIFKKAREDA  164 (308)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHTST
T ss_pred             HHHHHh----cCCHHHHH-------HHHHHHHhccccCccHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcC
Confidence            999999    99999999       699999999999987 999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHH-cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          292 FDFHRAIYNLGTVLYG-LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       292 P~~~~a~~~Lg~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      |....++...+.+.+. .|+                   +..|..+|++++++.|++..+...+..+
T Consensus       165 p~~~~~~~~~a~~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~  212 (308)
T 2ond_A          165 RTRHHVYVTAALMEYYCSKD-------------------KSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCC-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9998888877766543 577                   8999999999999999998665554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=9.8e-16  Score=130.17  Aligned_cols=119  Identities=16%  Similarity=0.019  Sum_probs=112.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      |..+..|+.+|..++..|+              +++|+..|+++++++|++..+|+++|.++..    +|++++|+    
T Consensus         1 p~~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~----   58 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI----   58 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred             CchHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHH----
Confidence            4457889999999999999              9999999999999999999999999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHc
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~  308 (498)
                         ..|+++++++|++..+++++|.++..+|++          ++|+..|+++++++      |++..++..++.+...+
T Consensus        59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           59 ---ADCNKAIEKDPNFVRAYIRKATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             ---HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHhCCCcHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence               699999999999999999999999999999          99999999999999      99999999998887543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=4.2e-16  Score=151.73  Aligned_cols=168  Identities=17%  Similarity=0.192  Sum_probs=144.7

Q ss_pred             hhHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-
Q 010864          132 EGRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-  202 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-  202 (498)
                      ..+...|++++|+.+|++++.+        +|....+++++|.+|...|+              +++|+..|++++++. 
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~  142 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIRE  142 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHHHH
Confidence            3466789999999999999988        46678899999999999999              999999999999984 


Q ss_pred             -------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          203 -------PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       203 -------p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                             |....+++++|.++..    .|++++|++.|++++..+++.... +|....+++++|.+|..+|++       
T Consensus       143 ~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------  211 (311)
T 3nf1_A          143 KVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF-------  211 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH-------
T ss_pred             HhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH-------
Confidence                   5667899999999999    999999997666666555443211 566788999999999999999       


Q ss_pred             hhHHHHHHHHHHHHHh-------------------------------------------------cCCCHHHHHHHHHHH
Q 010864          275 TIVRTAISKFRAAIQL-------------------------------------------------QFDFHRAIYNLGTVL  305 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l-------------------------------------------------~P~~~~a~~~Lg~~~  305 (498)
                         ++|+.+|++++++                                                 +|....+++++|.+|
T Consensus       212 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~  288 (311)
T 3nf1_A          212 ---KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALY  288 (311)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence               9999999999975                                                 466778899999999


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      ..+|+                   +.+|..+|++++++.|.
T Consensus       289 ~~~g~-------------------~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          289 RRQGK-------------------FEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHTC-------------------HHHHHHHHHHHHHHHC-
T ss_pred             HHCCC-------------------HHHHHHHHHHHHHHhhc
Confidence            99999                   99999999999998775

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.67  E-value=7e-15  Score=147.31  Aligned_cols=197  Identities=9%  Similarity=0.006  Sum_probs=169.0

Q ss_pred             hhhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CcCCCCCCCCchhhhHH
Q 010864          111 QLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLE  189 (498)
Q Consensus       111 q~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~~~~~~~~~~~~~~  189 (498)
                      .+..++..++..+..+...       .+..++|+.+++++|.++|++..+|+.++.++..++ .              ++
T Consensus        48 ~y~~~y~~~~~~~r~~~~~-------~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~--------------l~  106 (349)
T 3q7a_A           48 MYSEEYKDAMDYFRAIAAK-------EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS--------------LE  106 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHT-------TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HH
T ss_pred             eeCHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh--------------HH
Confidence            3567788888888777655       556678999999999999999999999999999999 5              99


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-G-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       190 ~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~-g-~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +++..+++++..+|++..+|+..+.++..    + + ++++++       ..+.++++.+|+|..+|++.+.++.++|.+
T Consensus       107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL-------~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~  175 (349)
T 3q7a_A          107 DELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEI-------EYIHGSLLPDPKNYHTWAYLHWLYSHFSTL  175 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHH-------HHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999998    7 7 777777       799999999999999999999999999988


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      +.+  ....+.+++++++++++++|.+..+|++++.++..+++.            ......+.++++++.+++.++|+|
T Consensus       176 ~~~--~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------------~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          176 GRI--SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------------ETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             TCC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------------CCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccc--chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------------ccchHHHHHHHHHHHHHHHhCCCC
Confidence            100  011223999999999999999999999999999988751            123456899999999999999999


Q ss_pred             HHHHHH
Q 010864          348 SVYSSA  353 (498)
Q Consensus       348 ~~~~~~  353 (498)
                      ......
T Consensus       242 ~SaW~Y  247 (349)
T 3q7a_A          242 VSAWNY  247 (349)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            954443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.66  E-value=6.2e-15  Score=124.24  Aligned_cols=134  Identities=31%  Similarity=0.430  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      ++|+.+|.++...|+              +++|+..|+++++.+|++..+++++|.++..    .|++++|+       .
T Consensus         2 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~   56 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAI-------E   56 (136)
T ss_dssp             HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------H
T ss_pred             cHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHH-------H
Confidence            578999999999999              9999999999999999999999999999999    99999999       6


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  318 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~  318 (498)
                      .|++++..+|.+..+++++|.++...|++          ++|+..|+++++..|++..+++++|.++...|+        
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------  118 (136)
T 2fo7_A           57 YYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------  118 (136)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--------
Confidence            88888899999999999999999999999          999999999999999999999999999999999        


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          319 VNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       319 ~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                                 +.+|..+|.+++.++|+
T Consensus       119 -----------~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          119 -----------YDEAIEYYQKALELDPR  135 (136)
T ss_dssp             -----------HHHHHHHHHHHHHHSTT
T ss_pred             -----------HHHHHHHHHHHHccCCC
Confidence                       89999999999999886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.65  E-value=8.2e-16  Score=138.61  Aligned_cols=131  Identities=14%  Similarity=0.065  Sum_probs=119.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|+++.+|+.+|.+|...|+              +++|+..|+++++++|++..+++++|
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la   85 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLRGENAELYAALA   85 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3457899999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HH-HHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          214 IA-ISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       214 ~~-~~~~~~~~g~~--~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .+ +..    .|++  ++|+       ..|+++++.+|++..+++++|.+|..+|++          ++|+.+|++++++
T Consensus        86 ~~l~~~----~~~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~  144 (177)
T 2e2e_A           86 TVLYYQ----ASQHMTAQTR-------AMIDKALALDSNEITALMLLASDAFMQANY----------AQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHH----TTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred             HHHHHh----cCCcchHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhh
Confidence            99 778    9998  9999       699999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHH
Q 010864          291 QFDFHRAIY  299 (498)
Q Consensus       291 ~P~~~~a~~  299 (498)
                      +|++.....
T Consensus       145 ~p~~~~~~~  153 (177)
T 2e2e_A          145 NSPRINRTQ  153 (177)
T ss_dssp             CCTTSCHHH
T ss_pred             CCCCccHHH
Confidence            999865443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.65  E-value=7.1e-15  Score=131.30  Aligned_cols=148  Identities=14%  Similarity=0.178  Sum_probs=132.6

Q ss_pred             hcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864          114 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS  183 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~  183 (498)
                      +++++|+..+.+++...          +..+...|++++|+..|+++++.+|++..++..+|.++...|+          
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------   91 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK----------   91 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------
Confidence            45555555555554433          2345678999999999999999999999999999999999999          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                          +++|+..|++++.++|++..+++++|.++..    .|++++|+       ..|+++++.+|++..++.++|.++..
T Consensus        92 ----~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A           92 ----YDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAI-------DSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             ----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHH
Confidence                9999999999999999999999999999999    99999999       68889999999999999999999999


Q ss_pred             hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      .|++          ++|+.+|++++++.|++..
T Consensus       157 ~~~~----------~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          157 MGRH----------EEALPHFKKANELDEGASV  179 (186)
T ss_dssp             TTCH----------HHHHHHHHHHHHHHHCCCG
T ss_pred             cCCH----------HHHHHHHHHHHHcCCCchh
Confidence            9999          9999999999999988653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=2.6e-15  Score=133.88  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      ++.++.+|+.+|.+++..|+              |++|+..|+++++++|++..+|+++|.+|..    +|++++|+   
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~---   65 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKE--------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAA---   65 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred             hhhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHH---
Confidence            45668899999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                          ..|+++++++|++..+|+++|.+|..+|++          ++|+.+|+++++++|++..++++++.......
T Consensus        66 ----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  127 (164)
T 3sz7_A           66 ----EDAELATVVDPKYSKAWSRLGLARFDMADY----------KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK  127 (164)
T ss_dssp             ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence                699999999999999999999999999999          99999999999999999998888777655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=7.9e-15  Score=157.61  Aligned_cols=191  Identities=10%  Similarity=0.028  Sum_probs=158.0

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      ....++|+..+++++.++|++..+|+.++.++..+++.    .........+++++++|+++++.+|++..+|++.+.++
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~----~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETE----KSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccc----cchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34456889999999999999999999999999998861    00011223489999999999999999999999999999


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          217 SDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       217 ~~~~~~~g--~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      ..    .|  ++++++       ..+.+++++||.+..+|++.|.++..+| .+          +++++++.++|+++|+
T Consensus       118 ~~----l~~~~~~~el-------~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~----------~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          118 SR----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNFS  176 (567)
T ss_dssp             HT----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH----------HHHHHHHHTTTTTTCC
T ss_pred             HH----cccccHHHHH-------HHHHHHHhhccccccHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHHCCC
Confidence            99    99  657777       7999999999999999999999999999 78          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +..+|+++|.++..++.....     ..........++++++++.+|+.++|++......++.+
T Consensus       177 n~saW~~r~~ll~~l~~~~~~-----~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          177 NYSSWHYRSCLLPQLHPQPDS-----GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCS-----SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhhcccccc-----cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999987541000     00001124568999999999999999998555544443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.64  E-value=1.4e-15  Score=150.48  Aligned_cols=182  Identities=13%  Similarity=0.111  Sum_probs=151.2

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      .++++.|...|.++...    +...|++++|+.+|.+++++.+..      ..++.++|.+|..+|+             
T Consensus        29 ~~~~~~A~~~~~~a~~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------   91 (307)
T 2ifu_A           29 KPDYDSAASEYAKAAVA----FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-------------   91 (307)
T ss_dssp             SCCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             CCCHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-------------
Confidence            36789999999998776    778999999999999999987543      5689999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          187 LLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                       +++|+.+|++|+++.+.      ...++.++|.+|.     .|++++|++.|++|+..+... ........+++++|.+
T Consensus        92 -~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-----~g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg~~  164 (307)
T 2ifu_A           92 -MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-----PLDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKASRL  164 (307)
T ss_dssp             -GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence             99999999999999543      2468889999883     499999997666666555431 0001126789999999


Q ss_pred             HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864          261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       261 l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                      |..+|++          ++|+.+|++++++.|++      ..++.++|.++..+|+                   +.+|.
T Consensus       165 ~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------------------~~~A~  215 (307)
T 2ifu_A          165 LVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-------------------YVAAQ  215 (307)
T ss_dssp             HHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHH
T ss_pred             HHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-------------------HHHHH
Confidence            9999999          99999999999987654      3578899999999999                   99999


Q ss_pred             HHHHHHHhcCCCHH
Q 010864          335 IYIAAAHALKPSYS  348 (498)
Q Consensus       335 ~~~~~Al~l~p~~~  348 (498)
                      .+|++++ ++|+..
T Consensus       216 ~~~~~al-~~p~~~  228 (307)
T 2ifu_A          216 KCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHT-TSTTST
T ss_pred             HHHHHHh-CCCCCC
Confidence            9999999 999765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=3.7e-16  Score=136.30  Aligned_cols=122  Identities=12%  Similarity=0.142  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHH
Q 010864          192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR  271 (498)
Q Consensus       192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~  271 (498)
                      -..|++++.++|++..+++++|.++..    .|++++|+       ..|++++..+|+++.+|+++|.+|..+|++    
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----   68 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQ-------KIFQALCMLDHYDARYFLGLGACRQSLGLY----   68 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHH-------HHHHHHHHhCCccHHHHHHHHHHHHHHhhH----
Confidence            357888999999999999999999999    99999999       699999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864          272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS  351 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~  351 (498)
                            ++|+.+|+++++++|+++.+++++|.+|..+|+                   +.+|..+|+++++++|+++.+.
T Consensus        69 ------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           69 ------EQALQSYSYGALMDINEPRFPFHAAECHLQLGD-------------------LDGAESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             ------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHTCGGGH
T ss_pred             ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCcchH
Confidence                  999999999999999999999999999999999                   9999999999999999877444


Q ss_pred             HH
Q 010864          352 SA  353 (498)
Q Consensus       352 ~~  353 (498)
                      ..
T Consensus       124 ~~  125 (142)
T 2xcb_A          124 AL  125 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.64  E-value=4.5e-16  Score=148.99  Aligned_cols=164  Identities=22%  Similarity=0.232  Sum_probs=143.5

Q ss_pred             HhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-----
Q 010864          135 SRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----  201 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----  201 (498)
                      ...|++++|+.+|++++++        +|..+.+++.+|.+|...|+              +++|+..|++++++     
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~   77 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------------YKEAAHLLNDALAIREKTL   77 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHHHHHc
Confidence            3456777777777777763        26678899999999999999              99999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          202 ---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       202 ---~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                         +|....+++++|.++..    +|++++|++.|++|+..+++....+ |....+++++|.+|..+|++          
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------  143 (283)
T 3edt_B           78 GKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA----------  143 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH----------
T ss_pred             CCcchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH----------
Confidence               36677899999999999    9999999988888888877766543 77889999999999999999          


Q ss_pred             HHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          278 RTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       278 ~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      ++|+.+|++++++        .|....++.++|.+|..+|+                   +.+|..+|++++++.+
T Consensus       144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-------------------YQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHH
Confidence            9999999999999        77778999999999999999                   8999999999998743

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.64  E-value=2.7e-15  Score=161.04  Aligned_cols=135  Identities=17%  Similarity=0.091  Sum_probs=128.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+..+|++++|+..|+++++++|+++.+++++|.+|..+|+              +++|+..|+++++++|++..+++++
T Consensus        32 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l   97 (568)
T 2vsy_A           32 AELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------------HAEAAVLLQQASDAAPEHPGIALWL   97 (568)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            36678999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL---SAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~---g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      |.+|..    +|++++|+       ..|+++++++|++..++.++|.++..+   |++          ++|+..|+++++
T Consensus        98 a~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~----------~~A~~~~~~al~  156 (568)
T 2vsy_A           98 GHALED----AGQAEAAA-------AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL----------DVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH----------HHHHHHHHHHHH
T ss_pred             HHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH----------HHHHHHHHHHHh
Confidence            999999    99999999       699999999999999999999999999   888          999999999999


Q ss_pred             hcCCCHHHHHHHH
Q 010864          290 LQFDFHRAIYNLG  302 (498)
Q Consensus       290 l~P~~~~a~~~Lg  302 (498)
                      .+|++...+..++
T Consensus       157 ~~p~~~~~~~~l~  169 (568)
T 2vsy_A          157 QGVGAVEPFAFLS  169 (568)
T ss_dssp             HTCCCSCHHHHTT
T ss_pred             cCCcccChHHHhC
Confidence            9999877776665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.63  E-value=2.4e-15  Score=133.08  Aligned_cols=123  Identities=20%  Similarity=0.326  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       230 ~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      +..|++|++.|+++++++|+++.+|+++|.++..+++++.+.+..+.+++|+..|++||+++|++..+|++||.+|..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            44566677999999999999999999999999999999777777788899999999999999999999999999999987


Q ss_pred             hhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          310 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      ..        .+......+.+.+|+.||++|++++|++..|..++.++..-
T Consensus        95 ~l--------~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           95 FL--------TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HH--------CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             cc--------CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            41        00000011349999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=2.9e-16  Score=164.63  Aligned_cols=140  Identities=14%  Similarity=0.116  Sum_probs=130.7

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----------
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------  205 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----------  205 (498)
                      ..+++++|+..|++++..+|+++.+|+++|.+|+.+|+              |++|+..|++|++++|++          
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~  311 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------------YMQAVIQYGKIVSWLEMEYGLSEKESKA  311 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhcccccCChHHHHH
Confidence            45678889999999999999999999999999999999              999999999999999998          


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       206 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                           ..+|+|+|.+|..    +|++++|+       .+|+++++++|++..+++++|.+|..+|++          ++|
T Consensus       312 ~~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~~g~a~~~~g~~----------~~A  370 (457)
T 1kt0_A          312 SESFLLAAFLNLAMCYLK----LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESA  370 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             HHHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHccCH----------HHH
Confidence                 7999999999999    99999999       699999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +.+|++|++++|++..++.+++.++..+++
T Consensus       371 ~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          371 KGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=1.2e-14  Score=134.44  Aligned_cols=144  Identities=16%  Similarity=0.188  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      ...++++|.++...|+              +++|+..|++++  +| ++.+++++|.++..    +|++++|+       
T Consensus         6 ~~~~~~~g~~~~~~~~--------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~----~g~~~~A~-------   57 (213)
T 1hh8_A            6 AISLWNEGVLAADKKD--------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTI----LKNMTEAE-------   57 (213)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHH----cCCHHHHH-------
Confidence            3457899999999999              999999999995  44 78999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH----------------HHHHHH
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----------------RAIYNL  301 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~----------------~a~~~L  301 (498)
                      ..|+++++++|++..+++++|.+|..+|++          ++|+.+|++++++.|++.                .+++++
T Consensus        58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            689999999999999999999999999999          999999999999888766                999999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHH
Q 010864          302 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS--VYSSALRLVR  358 (498)
Q Consensus       302 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~--~~~~~l~~~~  358 (498)
                      |.+|..+|+                   +..|..+|+++++++|++.  .+..++..++
T Consensus       128 ~~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  167 (213)
T 1hh8_A          128 AFMYAKKEE-------------------WKKAEEQLALATSMKSEPRHSKIDKAMECVW  167 (213)
T ss_dssp             HHHHHHTTC-------------------HHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HHHHHHccC-------------------HHHHHHHHHHHHHcCcccccchHHHHHHHHH
Confidence            999999999                   9999999999999999765  5555555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.63  E-value=8.1e-15  Score=143.77  Aligned_cols=151  Identities=10%  Similarity=0.012  Sum_probs=140.3

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      .-|++.+.++.+|..+...|+              +++|+..|+++++++|++..++++||.++..    +|++++|+  
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--  171 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESN--------------YTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAE--  171 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             HcCCchhhHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHH--
Confidence            349999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864          233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  312 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~  312 (498)
                           ..|++++..+|+....+.+.+..+...++.          ++|+..|+++++++|++..++++||.+|...|+  
T Consensus       172 -----~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--  234 (287)
T 3qou_A          172 -----AVLXTIPLQDQDTRYQGLVAQIELLXQAAD----------TPEIQQLQQQVAENPEDAALATQLALQLHQVGR--  234 (287)
T ss_dssp             -----HHHTTSCGGGCSHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             -----HHHHhCchhhcchHHHHHHHHHHHHhhccc----------CccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--
Confidence                 699999999998888889999999999999          999999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHH
Q 010864          313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY--SVYSSALRLV  357 (498)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--~~~~~~l~~~  357 (498)
                                       +.+|...|.++++.+|++  ......+..+
T Consensus       235 -----------------~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~  264 (287)
T 3qou_A          235 -----------------NEEALELLFGHLRXDLTAADGQTRXTFQEI  264 (287)
T ss_dssp             -----------------HHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence                             999999999999999998  5444444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=1e-15  Score=156.03  Aligned_cols=187  Identities=17%  Similarity=0.150  Sum_probs=154.0

Q ss_pred             hhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 010864          113 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQESA  172 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g  172 (498)
                      .+++++|+..+.+++...              +..+...|++++|+.+|++++++      +|....+++++|.+|..+|
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            356666666666665543              23456789999999999999998      6778899999999999999


Q ss_pred             CcCCCCCCCCchhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Q 010864          173 DNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDAFYNWAIAISDRAKMRGR----------TKEAEELWKQA  236 (498)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------~p~~~~a~~~lg~~~~~~~~~~g~----------~~eA~~~~~~A  236 (498)
                      +              +++|+..|++++.+      .+....+++++|.+|..    +|+          +.+|...|++|
T Consensus       141 ~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A  202 (411)
T 4a1s_A          141 R--------------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRA  202 (411)
T ss_dssp             C--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             C--------------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHH
Confidence            9              99999999999999      56677899999999999    999          66666666666


Q ss_pred             HHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH------HHHHHHHH
Q 010864          237 TKNYEKAVQLN------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR------AIYNLGTV  304 (498)
Q Consensus       237 l~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~------a~~~Lg~~  304 (498)
                      +..|++++++.      +....+++++|.+|..+|++          ++|+.+|++++++.++...      +++++|.+
T Consensus       203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (411)
T 4a1s_A          203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF----------QAAIEHHQERLRIAREFGDRAAERRANSNLGNS  272 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            66776666543      44567999999999999999          9999999999998765433      89999999


Q ss_pred             HHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          305 LYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       305 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      |..+|+                   +.+|..+|++++.+.+.
T Consensus       273 ~~~~g~-------------------~~~A~~~~~~al~~~~~  295 (411)
T 4a1s_A          273 HIFLGQ-------------------FEDAAEHYKRTLALAVE  295 (411)
T ss_dssp             HHTTTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHCcC-------------------HHHHHHHHHHHHHHHHH
Confidence            999998                   88888888888887764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.63  E-value=2.2e-15  Score=153.08  Aligned_cols=166  Identities=17%  Similarity=0.120  Sum_probs=142.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--
Q 010864          133 GRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--  204 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--  204 (498)
                      .+...|++++|+.+|++++.+      .+..+.+++++|.+|..+|+              +++|+..|++|+++.+.  
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~~~~~  177 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--------------TYFSMDYARQAYEIYKEHE  177 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhCc
Confidence            356789999999999999987      23356899999999999999              99999999999999443  


Q ss_pred             -----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHH
Q 010864          205 -----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  279 (498)
Q Consensus       205 -----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~  279 (498)
                           .+.+++++|.+|..    +|++++|++.|++|+..+.+. ...+....+++++|.+|..+|++          ++
T Consensus       178 ~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~----------~~  242 (383)
T 3ulq_A          178 AYNIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQY----------ED  242 (383)
T ss_dssp             TTHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HH
T ss_pred             cchHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCH----------HH
Confidence                 35689999999999    999999997777766665543 11223457899999999999999          99


Q ss_pred             HHHHHHHHHHh-----c-CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          280 AISKFRAAIQL-----Q-FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       280 Ai~~~~~Al~l-----~-P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      |+.+|++++++     + |....+++++|.+|..+|+                   +.+|..+|++++++.+.
T Consensus       243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-------------------IDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHHHH
Confidence            99999999994     5 8889999999999999999                   99999999999998543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=2.3e-14  Score=138.22  Aligned_cols=180  Identities=14%  Similarity=0.142  Sum_probs=144.0

Q ss_pred             hhcHHHHHHHHHHhhhcc--------hhhHHh----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcCC
Q 010864          113 AEQNNAAMELINSVTGVD--------EEGRSR----QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADNVS  176 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~--------~~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~  176 (498)
                      .+++++|+.++.++....        +..+..    .+++++|+..|+++++.  +++.+++++|.+|..    .++   
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~---  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD---  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC---
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC---
Confidence            466777888887776654        233455    78889999999998887  488889999999988    888   


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864          177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN  256 (498)
Q Consensus       177 ~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~  256 (498)
                                 +++|+.+|+++++++  +..+++++|.+|.......+++++|+       .+|+++++.  +++.++++
T Consensus       130 -----------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~-------~~~~~a~~~--~~~~a~~~  187 (273)
T 1ouv_A          130 -----------FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL-------ASYDKACDL--KDSPGCFN  187 (273)
T ss_dssp             -----------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHH
T ss_pred             -----------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH-------HHHHHHHHC--CCHHHHHH
Confidence                       999999999998876  67888888888864111156777777       577777766  46888999


Q ss_pred             HHHHHHH----hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhH
Q 010864          257 WGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNE  328 (498)
Q Consensus       257 lg~~l~~----~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~  328 (498)
                      +|.+|..    .+++          ++|+.+|+++++..|  +.++++||.+|..    .++                  
T Consensus       188 lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~------------------  237 (273)
T 1ouv_A          188 AGNMYHHGEGATKNF----------KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN------------------  237 (273)
T ss_dssp             HHHHHHHTCSSCCCH----------HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC------------------
T ss_pred             HHHHHHcCCCCCccH----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC------------------
Confidence            9999998    8888          999999999999865  8899999999998    776                  


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHH
Q 010864          329 LYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       329 ~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                       +.+|..+|++++++.|++...
T Consensus       238 -~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          238 -EKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             -STTHHHHHHHHHHHTCHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHH
Confidence             788999999999999976644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=4.2e-15  Score=125.97  Aligned_cols=122  Identities=19%  Similarity=0.159  Sum_probs=116.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      .|.+..+|+.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    .|++++|+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~---   70 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGD--------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLAL---   70 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTC--------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHH---
T ss_pred             CcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHH---
Confidence            46778999999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                          ..|+++++++|++..+++++|.++..+|++          ++|+.+|+++++++|++..++.+++.++..+|+
T Consensus        71 ----~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           71 ----KDCEECIQLEPTFIKGYTRKAAALEAMKDY----------TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHhCCCchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                689999999999999999999999999999          999999999999999999999999999988763

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.62  E-value=8.5e-14  Score=138.76  Aligned_cols=176  Identities=9%  Similarity=0.040  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR  219 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~  219 (498)
                      +++++.++++++..+|.+..+|+.++.++..+++            ..+++++.++.++++++|.|..+|++.+.++.. 
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~------------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-  156 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------PNWARELELCARFLEADERNFHCWDYRRFVAAQ-  156 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            7899999999999999999999999999999883            018999999999999999999999999999999 


Q ss_pred             HHHcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----HhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          220 AKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       220 ~~~~g~-~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                         .|+ +++++       .++.++++.+|.|..+|++++.++..++....+    ....+.++++++++.++|.++|++
T Consensus       157 ---l~~~~~eel-------~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          157 ---AAVAPAEEL-------AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             ---TTCCHHHHH-------HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             ---hCcCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence               998 46666       799999999999999999999999988432110    111245699999999999999999


Q ss_pred             HHHHHHHHHHHHHc-chhHHhccCCCCCCCCC--hhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          295 HRAIYNLGTVLYGL-AEDTLRTGGTVNPREVS--PNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       295 ~~a~~~Lg~~~~~~-g~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      ..+|+.+..++... |.           ...+  ....+.+++.++.+++++.|++.-
T Consensus       227 ~SaW~Y~r~ll~~~~~~-----------~~~~~~~~~~l~~el~~~~elle~~pd~~w  273 (331)
T 3dss_A          227 QSAWFYHRWLLGAGSGR-----------CELSVEKSTVLQSELESCKELQELEPENKW  273 (331)
T ss_dssp             HHHHHHHHHHHHSSSCG-----------GGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhccCc-----------cccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence            99998666655544 32           1111  124689999999999999999973

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=6.7e-14  Score=134.99  Aligned_cols=178  Identities=16%  Similarity=0.139  Sum_probs=147.7

Q ss_pred             hcHHHHHHHHHHhhhcc--------hhhHHh----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcCCC
Q 010864          114 EQNNAAMELINSVTGVD--------EEGRSR----QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADNVSL  177 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~--------~~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~~  177 (498)
                      +++++|+.++.++....        +..+..    .+++++|+.+|+++++.+  ++.+++++|.+|..    .++    
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~----   93 (273)
T 1ouv_A           20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN----   93 (273)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC----
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC----
Confidence            56677777777666533        233556    899999999999999985  89999999999999    888    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                                +++|+..|+++++.+  +..+++++|.+|.......+++++|+       .+|+++++.+  +..+++++
T Consensus        94 ----------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~-------~~~~~a~~~~--~~~a~~~l  152 (273)
T 1ouv_A           94 ----------TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV-------EYFTKACDLN--DGDGCTIL  152 (273)
T ss_dssp             ----------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH-------HHHHHHHHTT--CHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH-------HHHHHHHhcC--cHHHHHHH
Confidence                      999999999999874  88999999999864111157888888       6777887765  78899999


Q ss_pred             HHHHHH----hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhHH
Q 010864          258 GLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNEL  329 (498)
Q Consensus       258 g~~l~~----~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~  329 (498)
                      |.+|..    .+++          ++|+.+|+++++.  +++.+++++|.+|..    .++                   
T Consensus       153 g~~~~~~~~~~~~~----------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-------------------  201 (273)
T 1ouv_A          153 GSLYDAGRGTPKDL----------KKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-------------------  201 (273)
T ss_dssp             HHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-------------------
T ss_pred             HHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-------------------
Confidence            999998    8888          9999999999987  568999999999999    887                   


Q ss_pred             HHHHHHHHHHHHhcCCCHHH
Q 010864          330 YSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       330 ~~~A~~~~~~Al~l~p~~~~  349 (498)
                      +.+|..+|+++++..+....
T Consensus       202 ~~~A~~~~~~a~~~~~~~a~  221 (273)
T 1ouv_A          202 FKEALARYSKACELENGGGC  221 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHH
Confidence            89999999999999874433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=7.1e-15  Score=142.99  Aligned_cols=166  Identities=20%  Similarity=0.249  Sum_probs=147.9

Q ss_pred             HHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864          134 RSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  201 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  201 (498)
                      +...|++++|+.+|++++++        +|....++..+|.+|...|+              +++|+..|++++.+    
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------------YKDAANLLNDALAIREKT  102 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHH
Confidence            56789999999999999995        67788999999999999999              99999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864          202 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       202 ----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                          +|....+++++|.++..    .|++++|+..|++++..+++....+ |....+++++|.++...|++         
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------  169 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY---------  169 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH---------
T ss_pred             hCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH---------
Confidence                45677899999999999    9999999988888877776654333 56788999999999999999         


Q ss_pred             HHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          277 VRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                       ++|+.+|++++++        .|....+++++|.+|..+|+                   +.+|..+|++++++.+.
T Consensus       170 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          170 -EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-------------------FKQAETLYKEILTRAHE  227 (311)
T ss_dssp             -HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHH
Confidence             9999999999998        77778899999999999999                   89999999999986443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=2.9e-14  Score=125.72  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      +..++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+       
T Consensus        13 ~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------   67 (166)
T 1a17_A           13 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------   67 (166)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH-------
Confidence            5789999999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcchhHHhc
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRT  315 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~--~~~~g~~~~~~  315 (498)
                      ..|+++++++|++..+++++|.++..+|++          ++|+.+|+++++++|++..++..++.+  +...|+     
T Consensus        68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-----  132 (166)
T 1a17_A           68 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-----  132 (166)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-----
Confidence            689999999999999999999999999999          999999999999999999998666655  777777     


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          316 GGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                                    +.+|..++.++..
T Consensus       133 --------------~~~A~~~~~~~~~  145 (166)
T 1a17_A          133 --------------FERAIAGDEHKRS  145 (166)
T ss_dssp             --------------HHHHHHHHHHHHH
T ss_pred             --------------HHHHHHcccchHH
Confidence                          7888887776544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=4e-14  Score=119.20  Aligned_cols=126  Identities=29%  Similarity=0.351  Sum_probs=120.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++.+|.++...|+              +++|+..|++++..+|++..+++++|
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~   76 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLG   76 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .++..    .|++++|+       ..|++++..+|.+..++..+|.++...|++          ++|+.+|+++++++|+
T Consensus        77 ~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           77 NAYYK----QGDYDEAI-------EYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHSTT
T ss_pred             HHHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHccH----------HHHHHHHHHHHccCCC
Confidence            99999    99999999       688889999999999999999999999999          9999999999999986


Q ss_pred             C
Q 010864          294 F  294 (498)
Q Consensus       294 ~  294 (498)
                      .
T Consensus       136 ~  136 (136)
T 2fo7_A          136 S  136 (136)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=1.1e-14  Score=122.44  Aligned_cols=123  Identities=24%  Similarity=0.248  Sum_probs=117.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      .+|.++.+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+  
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~--   66 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVEN--------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAV--   66 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             cchhhhHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHH--
Confidence            446678899999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                           ..|++++..+|++..+++++|.++..+|++          ++|+.+|+++++++|++..+++++|.++..+|+
T Consensus        67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           67 -----QDCERAICIDPAYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHhcCccCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence                 688999999999999999999999999999          999999999999999999999999999998886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.61  E-value=1.8e-14  Score=133.21  Aligned_cols=131  Identities=11%  Similarity=0.118  Sum_probs=119.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++  +| ++.+++++|.+|..+|+              +++|+..|+++++++|++..+++++|
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------------MTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHH
Confidence            567899999999999996  44 78999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP----------------QALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~----------------~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      .++..    +|++++|+       ..|++++++.|++.                .+++++|.++..+|++          
T Consensus        79 ~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------  137 (213)
T 1hh8_A           79 MLYYQ----TEKYDLAI-------KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW----------  137 (213)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH----------
T ss_pred             HHHHH----cccHHHHH-------HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH----------
Confidence            99999    99999999       68888998887766                9999999999999999          


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          278 RTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      ++|+.+|+++++++|++.......+
T Consensus       138 ~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A          138 KKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             HHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccchHHHH
Confidence            9999999999999998754444333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.61  E-value=1.5e-15  Score=139.80  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=126.8

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH--------
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH--------  206 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~--------  206 (498)
                      ...|.++++.+.+.......+..+..+..+|.+++..|+              |++|+..|++++.+.|++.        
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhcccccchhhHH
Confidence            446778888888887777777788999999999999999              9999999999999999887        


Q ss_pred             --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864          207 --------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  278 (498)
Q Consensus       207 --------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~  278 (498)
                              .+++++|.++..    +|++++|+       .+|+++++++|++..+++++|.+|..+|++          +
T Consensus        81 ~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~  139 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNK----NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------E  139 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------H
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcccH----------H
Confidence                    899999999999    99999999       699999999999999999999999999999          9


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       279 ~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +|+.+|+++++++|++..++.+++.++..+++
T Consensus       140 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          140 EAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=1.2e-14  Score=128.51  Aligned_cols=114  Identities=23%  Similarity=0.270  Sum_probs=95.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ..+.+.|++|+..|+++++++|+++++|+++|.++..+++..    ......+.+++|+..|++||+++|++..+|+++|
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~----~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG   87 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc----hhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            346789999999999999999999999999999999998710    0001223357999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      .+|..+-+...++.++.+.|++|+.+|++|++++|++.
T Consensus        88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            99998322234678888899999999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=2.7e-15  Score=151.68  Aligned_cols=188  Identities=18%  Similarity=0.200  Sum_probs=149.6

Q ss_pred             hhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 010864          113 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQESA  172 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g  172 (498)
                      .+++++|+..+.+++...              +..+...|++++|+.+|++++.+      .|....++.++|.+|..+|
T Consensus        22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            355666666666555443              23466789999999999999887      4556789999999999999


Q ss_pred             CcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCC-------------HHHHHHHH
Q 010864          173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR-------------TKEAEELW  233 (498)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~  233 (498)
                      +              +++|+..|++++.+.|..      ..+++++|.++..    .|+             +.++...|
T Consensus       102 ~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~  163 (406)
T 3sf4_A          102 N--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDAL  163 (406)
T ss_dssp             C--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHH
T ss_pred             C--------------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHH
Confidence            9              999999999999997653      5689999999999    999             55555555


Q ss_pred             HHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH------HHHHHH
Q 010864          234 KQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH------RAIYNL  301 (498)
Q Consensus       234 ~~Al~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~------~a~~~L  301 (498)
                      ++|+..|++++.+      .|....+++++|.++..+|++          ++|+.+|++++++.++..      .+++++
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF----------RDAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            5555666666654      455678999999999999999          999999999999866553      389999


Q ss_pred             HHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          302 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       302 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      |.+|..+|+                   +.+|..+|.+++.+.+..
T Consensus       234 a~~~~~~g~-------------------~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          234 GNAYIFLGE-------------------FETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHTTC-------------------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCC-------------------hHHHHHHHHHHHHHHHhC
Confidence            999999998                   788888888888776543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.61  E-value=1.1e-14  Score=142.88  Aligned_cols=164  Identities=15%  Similarity=0.048  Sum_probs=138.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~------a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--  205 (498)
                      +...|++++|+..|++++...+.++.      .++.+|.++...++              +++|+..|++++.+.+..  
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------------HHHHHHHHHHHHHTCCCCSC
T ss_pred             HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHhccccc
Confidence            46689999999999999998887765      34468898888888              999999999999975442  


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       206 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                          ..+++++|.+|..    +|++++|+..|++|+..+++.-...+....+++|+|.+|.++|++          ++|+
T Consensus       151 ~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~  216 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESL  216 (293)
T ss_dssp             TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHH
Confidence                4479999999999    999999998888888766543233344567999999999999999          9999


Q ss_pred             HHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          282 SKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       282 ~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      .+|++++++.++.      +.+++++|.+|..+|+.                  +.+|..+|++|+.+
T Consensus       217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE------------------EAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc------------------HHHHHHHHHHHHHH
Confidence            9999999986544      88999999999999941                  58999999998865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=1.2e-14  Score=124.52  Aligned_cols=110  Identities=21%  Similarity=0.204  Sum_probs=96.0

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      .+.++.++|.+++..|+              |++|+.+|++|++++|+++.+|+++|.+|..    +|++++|+      
T Consensus         7 ~A~a~~~lG~~~~~~~~--------------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~------   62 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKD--------------FEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECV------   62 (127)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHH------
Confidence            46788999999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          237 TKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       237 l~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                       ..|+++++++|++       ..+++++|.++..+|++          ++|+.+|+++++..|+ +.....|.
T Consensus        63 -~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           63 -QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL----------SLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             -HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             -HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcC-HHHHHHHH
Confidence             5777777777665       45788888888888888          9999999999999886 55554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=3.6e-15  Score=145.78  Aligned_cols=198  Identities=16%  Similarity=0.160  Sum_probs=148.4

Q ss_pred             hhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 010864          113 AEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIER------NPEDYDALYNWALVLQESA  172 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g  172 (498)
                      .+++++|+..+.+++...              +..+...|++++|+.+|++++.+      .+....++..+|.+|..+|
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            355666666666655443              22356789999999999999987      4566789999999999999


Q ss_pred             CcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCC-------------HHHHHHHH
Q 010864          173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR-------------TKEAEELW  233 (498)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~  233 (498)
                      +              +++|+..|++++++.+..      ..+++++|.++..    .|+             ..++.+.|
T Consensus        98 ~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~  159 (338)
T 3ro2_A           98 N--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNAL  159 (338)
T ss_dssp             C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHH
T ss_pred             C--------------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHH
Confidence            9              999999999999986543      4589999999999    999             44444445


Q ss_pred             HHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCcchH------------------------------HhhhhhH
Q 010864          234 KQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPA------------------------------REKQTIV  277 (498)
Q Consensus       234 ~~Al~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~~a------------------------------~~~~~~~  277 (498)
                      ++|+..|++++.+      .+....++.++|.++...|++++|                              +...|++
T Consensus       160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  239 (338)
T 3ro2_A          160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  239 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence            5555555555543      344567888999999999998665                              2235677


Q ss_pred             HHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          278 RTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      ++|+.+|++++++.++.      ..+++++|.++..+|+                   +.+|..+|++++.+.+..
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-------------------YEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHHHHhc
Confidence            88888888888776554      6677778888888887                   888888888888876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.60  E-value=5.1e-14  Score=117.24  Aligned_cols=122  Identities=29%  Similarity=0.365  Sum_probs=112.8

Q ss_pred             hCCCC-HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          153 RNPED-YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       153 ~~P~~-~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      .+|.. ..+++.+|.++...|+              +++|+..|++++..+|++..+++++|.++..    .|++++|+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-   63 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI-   63 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             CCccccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHH-
Confidence            45665 7899999999999999              9999999999999999999999999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                            ..|++++..+|++..+++++|.++...|++          ++|+.+|+++++++|++..++.++|.++...|
T Consensus        64 ------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           64 ------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ------HHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                  688889999999999999999999999999          99999999999999999999999999987654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.59  E-value=5.9e-15  Score=133.40  Aligned_cols=139  Identities=7%  Similarity=-0.055  Sum_probs=123.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      +|...+.++.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    .|++++|+   
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~---   60 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE--------------HAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQ---   60 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC--------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred             CCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHH---
Confidence            34555678999999999999              9999999999999999999999999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864          234 KQATKNYEKAVQLNWNSPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT  312 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~  312 (498)
                          ..|++++..+| ++..+..++.+.. ..+..          .+|+..|+++++++|+++.+++++|.++...|+  
T Consensus        61 ----~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--  123 (176)
T 2r5s_A           61 ----ELLATIPLEYQ-DNSYKSLIAKLELHQQAAE----------SPELKRLEQELAANPDNFELACELAVQYNQVGR--  123 (176)
T ss_dssp             ----HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--
T ss_pred             ----HHHHHhhhccC-ChHHHHHHHHHHHHhhccc----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--
Confidence                69999999999 8888777775533 33444          568999999999999999999999999999999  


Q ss_pred             HhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                                       +.+|..+|.++++++|+.
T Consensus       124 -----------------~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          124 -----------------DEEALELLWNILKVNLGA  141 (176)
T ss_dssp             -----------------HHHHHHHHHHHHTTCTTT
T ss_pred             -----------------HHHHHHHHHHHHHhCccc
Confidence                             999999999999999975

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.59  E-value=1.3e-13  Score=136.45  Aligned_cols=208  Identities=9%  Similarity=0.006  Sum_probs=163.8

Q ss_pred             HHHHHHHHHhhhcch----------hhHHhhc--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---cCcCCC
Q 010864          117 NAAMELINSVTGVDE----------EGRSRQR--ILTFAAKRYANAIERNPEDYDALYNWALVL----QES---ADNVSL  177 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~----------~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~lg~~~----~~~---g~~~~~  177 (498)
                      ++|+.+...++..+.          ..+...+  ++++++.+++++|..+|++..+|+.++.++    ...   ++    
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~----  125 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD----  125 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC----
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC----
Confidence            456777777766662          2334466  999999999999999999999999999999    555   45    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK--EAEELWKQATKNYEKAVQLNWNSPQALN  255 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~--eA~~~~~~Al~~~~~Al~l~P~~~~a~~  255 (498)
                                +++++.++.++++++|++..+|++.+.++..    .|+++  +++       ..+.++++.+|.|..+|+
T Consensus       126 ----------~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL-------~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          126 ----------PYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKEL-------SFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             ----------THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHH-------HHHHHHHHHCTTCHHHHH
T ss_pred             ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHH-------HHHHHHHHhCCCCHHHHH
Confidence                      9999999999999999999999999999999    99887  766       799999999999999999


Q ss_pred             HHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhcc------CCCC-CCCCCh--
Q 010864          256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG------GTVN-PREVSP--  326 (498)
Q Consensus       256 ~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~------~~~~-~~~~~~--  326 (498)
                      +++.++..+++.    .....+++++++++++|.++|++..+|++++.++...|+......      ..+. ....++  
T Consensus       185 ~R~~ll~~l~~~----~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a  260 (306)
T 3dra_A          185 HRFFLLFSKKHL----ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA  260 (306)
T ss_dssp             HHHHHHHSSGGG----CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHH
T ss_pred             HHHHHHHhcccc----chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHH
Confidence            999999998871    011123999999999999999999999999999999886321110      0011 000011  


Q ss_pred             ----------hHHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 010864          327 ----------NELYSQSAIYIAAAHA-LKPSYSVYSSA  353 (498)
Q Consensus       327 ----------~~~~~~A~~~~~~Al~-l~p~~~~~~~~  353 (498)
                                .+...+|..+|.++.+ +||-+..|..-
T Consensus       261 l~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          261 LETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence                      1124678888888886 78888866553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.59  E-value=2e-13  Score=136.03  Aligned_cols=194  Identities=11%  Similarity=0.019  Sum_probs=156.8

Q ss_pred             hccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          137 QRILT-FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       137 ~g~~~-~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      .|.++ +|+.++.++|.++|++..+|+.++.++..++....    .......+++++.++.+++..+|++..+|+..+.+
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~----~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS----PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc----chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44554 79999999999999999999999999998875100    00112347999999999999999999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-cchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          216 ISDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       216 ~~~~~~~~g~--~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      +..    .|+  +++++       .++.++++.+|.|..+|++.+.++...|. +          ++++.++.++|+.+|
T Consensus       118 L~~----l~~~~~~~EL-------~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~----------~eel~~~~~~I~~~p  176 (331)
T 3dss_A          118 LSR----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNF  176 (331)
T ss_dssp             HHH----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCS
T ss_pred             Hhc----cCcccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH----------HHHHHHHHHHHHHCC
Confidence            999    885  66666       79999999999999999999999999998 5          899999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHcc
Q 010864          293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS-ALRLVRSM  360 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~-~l~~~~~~  360 (498)
                      .+..+|++++.++..+......     .+........+.++++++.+++.++|++..... ...++...
T Consensus       177 ~N~SAW~~R~~ll~~l~~~~~~-----~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          177 SNYSSWHYRSCLLPQLHPQPDS-----GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             CCHHHHHHHHHHHHHHSCCC-----------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHhhhcccc-----ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988531100     001112345689999999999999999995443 33444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=2.7e-14  Score=122.39  Aligned_cols=124  Identities=17%  Similarity=0.085  Sum_probs=113.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       152 ~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      ..+|.++..++.+|.+++..|+              +++|+..|++++.++|++..+++++|.++..    +|++++|+ 
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-   63 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL-   63 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred             CCccccHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHH-
Confidence            4578899999999999999999              9999999999999999999999999999999    99999999 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 010864          232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLGTVLY  306 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-----~~~a~~~Lg~~~~  306 (498)
                            ..|+++++++|+++.+++++|.++..+|++          ++|+.+|+++++++|+     +..+...+..+..
T Consensus        64 ------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           64 ------ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhCchhHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence                  699999999999999999999999999999          9999999999999998     7788888877766


Q ss_pred             Hcch
Q 010864          307 GLAE  310 (498)
Q Consensus       307 ~~g~  310 (498)
                      ....
T Consensus       128 ~~~~  131 (137)
T 3q49_B          128 KRWN  131 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.2e-14  Score=121.74  Aligned_cols=116  Identities=17%  Similarity=0.119  Sum_probs=107.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864          203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS  282 (498)
Q Consensus       203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~  282 (498)
                      |..+..++++|..+..    .|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+.
T Consensus         1 p~~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~   59 (126)
T 3upv_A            1 SMKAEEARLEGKEYFT----KSDWPNAV-------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIA   59 (126)
T ss_dssp             CHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHH
T ss_pred             CchHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------HHHHH
Confidence            3456789999999999    99999999       699999999999999999999999999999          99999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC------CCHHHHHHHHHH
Q 010864          283 KFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALRL  356 (498)
Q Consensus       283 ~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~------p~~~~~~~~l~~  356 (498)
                      .|+++++++|++..+++++|.++..+|+                   +.+|..+|+++++++      |++......+..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKE-------------------YASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhC-------------------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            9999999999999999999999999999                   999999999999999      888877766665


Q ss_pred             HH
Q 010864          357 VR  358 (498)
Q Consensus       357 ~~  358 (498)
                      +.
T Consensus       121 ~~  122 (126)
T 3upv_A          121 AS  122 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.58  E-value=1.3e-14  Score=147.24  Aligned_cols=165  Identities=12%  Similarity=0.021  Sum_probs=142.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---
Q 010864          134 RSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---  204 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---  204 (498)
                      +...|++++|+..|++++.+.      +..+.+++++|.+|..+|+              +++|+..|++|+.+.+.   
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~~~  176 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--------------THVSMYHILQALDIYQNHPL  176 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHHHHhCCC
Confidence            567899999999999999874      2356799999999999999              99999999999998443   


Q ss_pred             ----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          205 ----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       205 ----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                          .+.+++++|.+|..    +|++++|++.|++|+..+++. ...+....+++++|.+|..+|++          ++|
T Consensus       177 ~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~----------~~A  241 (378)
T 3q15_A          177 YSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDD----------QMA  241 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------HHH
T ss_pred             chhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCCH----------HHH
Confidence                35689999999999    999999998777777666432 11123467899999999999999          999


Q ss_pred             HHHHHHHHH-----hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          281 ISKFRAAIQ-----LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       281 i~~~~~Al~-----l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +.+|+++++     .+|....+++++|.+|..+|+                   +.+|..++++++++.+.
T Consensus       242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-------------------TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHHHH
Confidence            999999999     688889999999999999999                   99999999999998554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.58  E-value=1.4e-14  Score=147.18  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=134.2

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHH
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE-------DYDALYNWALVL  168 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~~  168 (498)
                      ..+++++|+..+.+++...                +..+...|++++|+.+|++++++.+.       .+.+++++|.+|
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            4578888988888887652                33467789999999999999998543       356899999999


Q ss_pred             HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      ..+|+              +++|+..|++++++.+..      ..+++++|.+|..    +|++++|+..|++|+..+++
T Consensus       195 ~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          195 LDLKQ--------------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcC--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence            99999              999999999999985543      3589999999999    99999999655555555443


Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcch
Q 010864          243 AVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       243 Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-----P~~~~a~~~Lg~~~~~~g~  310 (498)
                      .  .+ |....+++++|.++..+|++          ++|+.+|++++++.     |.....+.++|.++...|+
T Consensus       257 ~--~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          257 S--NILPSLPQAYFLITQIHYKLGKI----------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             T--TCGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             h--ccchhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            1  35 77899999999999999999          88888888888873     3333335556666666664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=9.6e-15  Score=148.81  Aligned_cols=173  Identities=14%  Similarity=0.071  Sum_probs=147.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh------CC
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CP  203 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------~p  203 (498)
                      +...|++++|+.+|+++++++|++.    .+++.+|.+|...|+              +++|+..|++++++      .|
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------------YNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHccCch
Confidence            5778999999999999999999987    589999999999999              99999999999998      57


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------cchHHhh
Q 010864          204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA----------IVPAREK  273 (498)
Q Consensus       204 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~----------~~~a~~~  273 (498)
                      ....+++++|.+|..    +|++++|+..|++++..+.+. ...|....+++++|.+|..+|+          +   .+.
T Consensus       124 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~---~~a  195 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKV----MGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG---DDV  195 (411)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC---HHH
T ss_pred             HHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHcCcccccccchhhh---hhh
Confidence            788999999999999    999999998777777766553 2245678899999999999999          1   111


Q ss_pred             hhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          274 QTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       274 ~~~~~~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      ...+++|+.+|++++++.      +....+++++|.+|..+|+                   +.+|..+|++++++.+..
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-------------------FQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHHHhc
Confidence            111299999999999873      4456799999999999999                   899999999999987754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=2.3e-14  Score=127.39  Aligned_cols=119  Identities=17%  Similarity=0.060  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------CPTLHDAFYNWAIAISD  218 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------------------~p~~~~a~~~lg~~~~~  218 (498)
                      .+..+..+|..++..|+              |++|+..|++++.+                  +|.+..+|+++|.+|..
T Consensus        10 ~a~~~~~~G~~~~~~~~--------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~   75 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKD--------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN   75 (162)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35778999999999999              99999999999999                  77788999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH-HH
Q 010864          219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RA  297 (498)
Q Consensus       219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~-~a  297 (498)
                          +|++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|++. .+
T Consensus        76 ----~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~  134 (162)
T 3rkv_A           76 ----IGDLHEAE-------ETSSEVLKREETNEKALFRRAKARIAAWKL----------DEAEEDLKLLLRNHPAAASVV  134 (162)
T ss_dssp             ----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGHHHH
T ss_pred             ----cCcHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCCCHHHH
Confidence                99999999       699999999999999999999999999999          999999999999999999 77


Q ss_pred             HHHHHHHHHHcch
Q 010864          298 IYNLGTVLYGLAE  310 (498)
Q Consensus       298 ~~~Lg~~~~~~g~  310 (498)
                      ...|+.+...+.+
T Consensus       135 ~~~l~~~~~~~~~  147 (162)
T 3rkv_A          135 AREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.57  E-value=3.4e-14  Score=127.93  Aligned_cols=130  Identities=12%  Similarity=0.055  Sum_probs=116.5

Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA-  260 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~-  260 (498)
                      +...+++++|+..|+++++.+|++..+++.+|.++..    .|++++|+       ..|+++++++|++..+++++|.+ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~l   88 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSL-------LAYRQALQLRGENAELYAALATVL   88 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4456779999999999999999999999999999999    99999999       69999999999999999999999 


Q ss_pred             HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHH
Q 010864          261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  340 (498)
Q Consensus       261 l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  340 (498)
                      +...|++        ..++|+.+|+++++++|++..+++++|.+|..+|+                   +.+|..+|.++
T Consensus        89 ~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~a  141 (177)
T 2e2e_A           89 YYQASQH--------MTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-------------------YAQAIELWQKV  141 (177)
T ss_dssp             HHHTTTC--------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHH
T ss_pred             HHhcCCc--------chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-------------------HHHHHHHHHHH
Confidence            7788872        11899999999999999999999999999999999                   99999999999


Q ss_pred             HhcCCCHHH
Q 010864          341 HALKPSYSV  349 (498)
Q Consensus       341 l~l~p~~~~  349 (498)
                      ++++|++..
T Consensus       142 l~~~p~~~~  150 (177)
T 2e2e_A          142 MDLNSPRIN  150 (177)
T ss_dssp             HHTCCTTSC
T ss_pred             HhhCCCCcc
Confidence            999998863

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=1.2e-13  Score=135.25  Aligned_cols=160  Identities=16%  Similarity=0.052  Sum_probs=135.7

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--  205 (498)
                      +...|++++|+..|.++++..+...      ..++.+|.++...|+              +++|+..|++++.+.+..  
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------------HHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHHhcCCc
Confidence            5678999999999999999988765      346788999999999              999999999999886553  


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       206 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                          ..+++++|.+|..    +|++++|+..|++|+..++    ..|++    ..+++|+|.+|..+|++          
T Consensus       151 ~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~----~~~~~~~~~~~~~~nlg~~y~~~~~y----------  212 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLE----ALHDNEEFDVKVRYNHAKALYLDSRY----------  212 (293)
T ss_dssp             TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred             hHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH----hcCccccchHHHHHhHHHHHHHHhhH----------
Confidence                6799999999999    9999999976666665554    34443    37999999999999999          


Q ss_pred             HHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHH-HHHHHHHHhcC
Q 010864          278 RTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS-AIYIAAAHALK  344 (498)
Q Consensus       278 ~~Ai~~~~~Al~l~P~------~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al~l~  344 (498)
                      ++|+.+|++++++.++      ...+++++|.+|..+|+                   +.+| ..+|++|+.+.
T Consensus       213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-------------------~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-------------------EEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-------------------cHHHHHHHHHHHHHHH
Confidence            9999999999998643      27899999999999998                   7888 77888888653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=145.50  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=150.3

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhcc--------------------HHHHHHHHHHHHHh--
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRI--------------------LTFAAKRYANAIER--  153 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~--------------------~~~A~~~~~~al~~--  153 (498)
                      ..+++++|+..+.+++...                +..+...|+                    +++|+..|++++.+  
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3467777777777666543                234566788                    99999999999887  


Q ss_pred             ----CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHc
Q 010864          154 ----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMR  223 (498)
Q Consensus       154 ----~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~------~a~~~lg~~~~~~~~~~  223 (498)
                          .+....++.++|.+|..+|+              +++|+..|++++++.+...      .+++++|.++..    +
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~  240 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----L  240 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTB--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred             hccCcHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----c
Confidence                34556789999999999999              9999999999999966543      389999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRA  297 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a  297 (498)
                      |++++|+..|++++..+.+. ...+....+++++|.+|...|++          ++|+.+|++++++.+..      ..+
T Consensus       241 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~  309 (406)
T 3sf4_A          241 GEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELNDRIGEGRA  309 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            99999996555555444321 00111278899999999999999          99999999999986554      778


Q ss_pred             HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       298 ~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +.++|.+|..+|+                   +.+|..+|++++++.+.
T Consensus       310 ~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          310 CWSLGNAYTALGN-------------------HDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999                   99999999999988543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=1.6e-13  Score=120.90  Aligned_cols=122  Identities=20%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++++|.++...|+              +++|+..|+++++++|++..+++++|
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            5778999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~--l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .++..    +|++++|+       ..|+++++++|++..++.+++.+  +...|++          ++|+..++++..+
T Consensus        89 ~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~  146 (166)
T 1a17_A           89 ASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred             HHHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHcccchHHH
Confidence            99999    99999999       69999999999999998666655  7777888          9999999988765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=2.4e-14  Score=121.70  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  239 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~  239 (498)
                      .++.+|.++...|+              +++|+..|+++++++|++..+|+++|.++..    +|++++|+       ..
T Consensus        19 ~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~   73 (121)
T 1hxi_A           19 NPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------IA   73 (121)
T ss_dssp             CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             hHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence            47899999999999              9999999999999999999999999999999    99999999       79


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       240 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      |+++++++|++..+++++|.+|..+|++          ++|+..|+++++++|++..
T Consensus        74 ~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           74 LNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999          9999999999999998754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.56  E-value=5.6e-14  Score=120.35  Aligned_cols=106  Identities=13%  Similarity=0.080  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      .+.++.+||.++..    .|++++|+       .+|++|++++|+++.+++++|.+|..+|++          ++|+..|
T Consensus         7 ~A~a~~~lG~~~~~----~~~~~~A~-------~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~   65 (127)
T 4gcn_A            7 AAIAEKDLGNAAYK----QKDFEKAH-------VHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHH
Confidence            45688999999999    99999999       699999999999999999999999999999          9999999


Q ss_pred             HHHHHhcCCC-------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          285 RAAIQLQFDF-------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       285 ~~Al~l~P~~-------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                      +++++++|++       +.+++++|.++..+|+                   +..|+.+|++++.+.|+....
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~-------------------~~~A~~~~~kal~~~~~~~~~  119 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQND-------------------LSLAVQWFHRSLSEFRDPELV  119 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHSCCHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhCcCHHHH
Confidence            9999998876       3578888888888888                   999999999999999976543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.56  E-value=1.2e-13  Score=138.74  Aligned_cols=123  Identities=12%  Similarity=0.059  Sum_probs=115.0

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  197 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~  197 (498)
                      .+..+|++++|+.+|++++.++|++               ..+|+++|.+|..+|+              +++|+.+|++
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~~~  221 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------------FSAAIESCNK  221 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHH
Confidence            3678999999999999999999999               6999999999999999              9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       198 Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      +++++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++.++|.++..+|++          
T Consensus       222 al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~a~~~l~~~~~~~~~~----------  280 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ----------  280 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHhCCCcHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----------
Confidence            999999999999999999999    99999999       699999999999999999999999999999          


Q ss_pred             HHH-HHHHHHHHHh
Q 010864          278 RTA-ISKFRAAIQL  290 (498)
Q Consensus       278 ~~A-i~~~~~Al~l  290 (498)
                      ++| ...|++++..
T Consensus       281 ~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 LAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            877 5567776643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=1.4e-13  Score=113.59  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=109.0

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      .+..++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    +|++++|+      
T Consensus         3 ~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~------   58 (118)
T 1elw_A            3 QVNELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY------   58 (118)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHH------
Confidence            46789999999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                       ..|+++++.+|++..+++++|.++..+|++          ++|+.+|+++++++|++..++.+++.+.
T Consensus        59 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           59 -EDGCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             -HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence             689999999999999999999999999999          9999999999999999999999998875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.55  E-value=6.4e-14  Score=130.97  Aligned_cols=165  Identities=14%  Similarity=-0.033  Sum_probs=134.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA----DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF  209 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g----~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~  209 (498)
                      +...+++++|+.+|+++++.  +++.+++++|.+|.. +    +              +++|+.+|++++  +++++.++
T Consensus        28 ~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--------------~~~A~~~~~~A~--~~g~~~a~   88 (212)
T 3rjv_A           28 WVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--------------YPQARQLAEKAV--EAGSKSGE   88 (212)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--------------HHHHHHHHHHHH--HTTCHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--------------HHHHHHHHHHHH--HCCCHHHH
Confidence            45589999999999999875  689999999999988 6    6              999999999995  56899999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----hcCcchHHhhhhhHHHHHHH
Q 010864          210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P--~~~~a~~~lg~~l~~----~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      ++||.+|.......+++++|+       .+|+++++..+  +++.++++||.+|..    .+++          ++|+.+
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~-------~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~----------~~A~~~  151 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAI-------TLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD----------VKASEY  151 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHH-------HHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH----------HHHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHH-------HHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH----------HHHHHH
Confidence            999999963111135777777       79999999988  469999999999998    6677          999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       284 ~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      |++|+++ +.++.++++||.+|......             .....+.+|..+|+++.+......
T Consensus       152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg-------------~~~~d~~~A~~~~~~A~~~g~~~A  202 (212)
T 3rjv_A          152 FKGSSSL-SRTGYAEYWAGMMFQQGEKG-------------FIEPNKQKALHWLNVSCLEGFDTG  202 (212)
T ss_dssp             HHHHHHT-SCTTHHHHHHHHHHHHCBTT-------------TBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHcCCCC-------------CCCCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999 77888999999999764200             000017899999999999865443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.55  E-value=3.8e-14  Score=138.57  Aligned_cols=165  Identities=14%  Similarity=0.033  Sum_probs=126.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      |.++.+++.+|.+++..|+              +++|+..|+++++++|++..+++++|.+|..    +|++++|+    
T Consensus         1 p~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~----   58 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL----   58 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred             ChhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH----
Confidence            6788999999999999999              9999999999999999999999999999999    99999999    


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH-
Q 010864          235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL-  313 (498)
Q Consensus       235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~-  313 (498)
                         ..|+++++++|++..+++++|.+|..+|++          ++|+..|+++++++|++...+..+........+... 
T Consensus        59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~  125 (281)
T 2c2l_A           59 ---ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  125 (281)
T ss_dssp             ---HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH
Confidence               699999999999999999999999999999          999999999999999763222211111111111000 


Q ss_pred             -hccCCCCCCCCC--------hhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          314 -RTGGTVNPREVS--------PNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       314 -~~~~~~~~~~~~--------~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                       .........+..        ....+.+|+..|.++++++|++......+
T Consensus       126 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l  175 (281)
T 2c2l_A          126 NSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ  175 (281)
T ss_dssp             HHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHH
Confidence             000000101110        11246788888889999999887444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=1.1e-13  Score=130.34  Aligned_cols=150  Identities=12%  Similarity=0.097  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      .+.+++++|..++..|+              +++|+..|+++++..|++   ..+++++|.+|..    +|++++|+   
T Consensus         3 ~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~---   61 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGN--------------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQ---   61 (225)
T ss_dssp             CHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred             CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHH---
Confidence            56889999999999999              999999999999999986   4799999999999    99999999   


Q ss_pred             HHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCc--------chHHhhhhhHHHHHHHHHHHHHhcCCCHHHH----
Q 010864          234 KQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAI--------VPAREKQTIVRTAISKFRAAIQLQFDFHRAI----  298 (498)
Q Consensus       234 ~~Al~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~--------~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~----  298 (498)
                          ..|+++++.+|++..   +++++|.++..+|..        .......|++++|+..|+++++..|++..++    
T Consensus        62 ----~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           62 ----AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             ----HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             ----HHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence                699999999999864   899999999876421        1113345677999999999999999987554    


Q ss_pred             -------------HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          299 -------------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       299 -------------~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                                   +.+|.+|+..|+                   +..|+.+|+++++..|+++..
T Consensus       138 ~l~~~~~~~~~~~~~~a~~~~~~~~-------------------~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          138 RLVFLKDRLAKYEYSVAEYYTERGA-------------------WVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCc-------------------HHHHHHHHHHHHHHCcCCCcc
Confidence                         577888888888                   999999999999999998743

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=5.1e-14  Score=125.43  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=107.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       202 ~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                      ++.++..++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+
T Consensus         7 ~~~~a~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~   65 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMA----RKEYSKAI-------DLYTQALSIAPANPIYLSNRAAAYSASGQH----------EKAA   65 (164)
T ss_dssp             CCHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             hhhhHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCcCHHHHHHHHHHHHHccCH----------HHHH
Confidence            34567899999999999    99999999       699999999999999999999999999999          9999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHH
Q 010864          282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV--YSSALRLVR  358 (498)
Q Consensus       282 ~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~--~~~~l~~~~  358 (498)
                      .+|+++++++|++..+++++|.+|..+|+                   +.+|..+|+++++++|++..  +..++..++
T Consensus        66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           66 EDAELATVVDPKYSKAWSRLGLARFDMAD-------------------YKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999                   99999999999999999974  555555444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=3.1e-14  Score=126.22  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcCcchHHhh
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-------SPQ-----ALNNWGLALQELSAIVPAREK  273 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-------~~~-----a~~~lg~~l~~~g~~~~a~~~  273 (498)
                      +..+.++|..+..    .|+|++|+       ..|++|++++|+       +..     +|+|+|.++..+|++      
T Consensus        11 a~~~~~~G~~l~~----~g~~eeAi-------~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------   73 (159)
T 2hr2_A           11 AYLALSDAQRQLV----AGEYDEAA-------ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------   73 (159)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred             HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH------
Confidence            4678999999999    99999999       699999999999       544     999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          274 QTIVRTAISKFRAAIQL-------QFDFHRAI----YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       274 ~~~~~~Ai~~~~~Al~l-------~P~~~~a~----~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                          ++|+.+|++||++       +|++..+|    +++|.+|..+|+                   +++|+.+|+++++
T Consensus        74 ----~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-------------------~eEAl~~y~kAle  130 (159)
T 2hr2_A           74 ----DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-------------------GAEAMPEFKKVVE  130 (159)
T ss_dssp             ----HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-------------------HHHHHHHHHHHHh
Confidence                9999999999999       99999999    999999999999                   9999999999999


Q ss_pred             cCCCHH
Q 010864          343 LKPSYS  348 (498)
Q Consensus       343 l~p~~~  348 (498)
                      ++|++.
T Consensus       131 l~p~d~  136 (159)
T 2hr2_A          131 MIEERK  136 (159)
T ss_dssp             HHHHCC
T ss_pred             cCCCcH
Confidence            999887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=4.8e-14  Score=137.74  Aligned_cols=187  Identities=13%  Similarity=0.098  Sum_probs=147.0

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhcc--------------------HHHHHHHHHHHHHh--
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRI--------------------LTFAAKRYANAIER--  153 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~--------------------~~~A~~~~~~al~~--  153 (498)
                      ..+++++|...+.+++...                +..+...|+                    +++|+..|++++.+  
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~  174 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT  174 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3467777777776665543                234566788                    99999999999876  


Q ss_pred             ----CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHc
Q 010864          154 ----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       154 ----~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~  223 (498)
                          .+....++.++|.++...|+              +++|+..|++++++.+..      ..+++++|.++..    .
T Consensus       175 ~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~  236 (338)
T 3ro2_A          175 ALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----L  236 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----H
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----c
Confidence                34456789999999999999              999999999999986542      3489999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRA  297 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a  297 (498)
                      |++++|++.+++++..+.+. ...+....+++++|.++..+|++          ++|+.+|++++++.+..      ..+
T Consensus       237 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~  305 (338)
T 3ro2_A          237 GEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGEGRA  305 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            99999996555555444431 00111278899999999999999          99999999999986543      568


Q ss_pred             HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       298 ~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      +.++|.+|..+|+                   +.+|..+|++++++.+.
T Consensus       306 ~~~la~~~~~~g~-------------------~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          306 CWSLGNAYTALGN-------------------HDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTC-------------------HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHHHh
Confidence            9999999999999                   99999999999998765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=118.42  Aligned_cols=121  Identities=18%  Similarity=0.096  Sum_probs=113.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHH
Q 010864          152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKE  228 (498)
Q Consensus       152 ~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~e  228 (498)
                      ..+|.+...++.+|..++..|+              +++|+..|+++++++|++   ..+++++|.++..    .|++++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~   83 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGD--------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDK   83 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHH
Confidence            3467899999999999999999              999999999999999998   8999999999999    999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864          229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG  307 (498)
Q Consensus       229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~  307 (498)
                      |+       ..|+++++++|++..+++++|.++..+|++          ++|+.+|+++++++|++..++..++.+...
T Consensus        84 A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           84 AE-------TEASKAIEKDGGDVKALYRRSQALEKLGRL----------DQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HH-------HHHHHHHHHTSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HH-------HHHHHHHhhCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99       688999999999999999999999999999          999999999999999999999988887543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.52  E-value=1.1e-13  Score=135.22  Aligned_cols=166  Identities=14%  Similarity=-0.003  Sum_probs=126.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++.++|+++.+++++|.+|..+|+              +++|+..|+++++++|++..+++++|
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHhcCcchH----------------Hhhh
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA---LQELSAIVPA----------------REKQ  274 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~---l~~~g~~~~a----------------~~~~  274 (498)
                      .+|..    +|++++|+       ..|+++++++|++...+......   +.+...+...                .-..
T Consensus        80 ~~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~  148 (281)
T 2c2l_A           80 QCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIA  148 (281)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999    99999999       56666666666542111111111   1100000000                0124


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864          275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA  342 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  342 (498)
                      |++++|+..|+++++++|++......++.++...++                  .+.++...|.++.+
T Consensus       149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------------~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK------------------YMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHH------------------HHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHH------------------HHHHHHHHHHhhhc
Confidence            556899999999999999888888888777766632                  15667777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.52  E-value=1.3e-14  Score=141.08  Aligned_cols=171  Identities=12%  Similarity=0.041  Sum_probs=138.6

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNW-------ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA  208 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~l-------g~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a  208 (498)
                      ..+++..|..+|.++++++|+.+++|.++       +.++..+++              +.+++..+++++.+.|+...+
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r--------------~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY--------------SRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH--------------TGGGTTHHHHTTTCCGGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH--------------HHHHHHHHHHHhcCChhhhhh
Confidence            47999999999999999999999999999       999999999              999999999999998886655


Q ss_pred             HHH---------------------HHHHHHHHHHHcCCHHHHHHHHH--------------------------HHHHHHH
Q 010864          209 FYN---------------------WAIAISDRAKMRGRTKEAEELWK--------------------------QATKNYE  241 (498)
Q Consensus       209 ~~~---------------------lg~~~~~~~~~~g~~~eA~~~~~--------------------------~Al~~~~  241 (498)
                      +++                     ++.++..    .|+|++|.+.|+                          .|+..|+
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~  159 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVK  159 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555                     7788888    999999996542                          3444444


Q ss_pred             HHHhcC-CCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhcc
Q 010864          242 KAVQLN-WNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTG  316 (498)
Q Consensus       242 ~Al~l~-P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~Lg~~~~~~g~~~~~~~  316 (498)
                      +++... |.+ ..+++++|.++..+|++          ++|+.+|++++.-.  |. ...+++++|.++..+|+      
T Consensus       160 ~a~~~~d~~~~~~a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------  223 (282)
T 4f3v_A          160 SAGKWPDKFLAGAAGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------  223 (282)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------
T ss_pred             HhhccCCcccHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------
Confidence            443332 111 34667777777777776          99999999998654  65 66799999999999999      


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          317 GTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       317 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                                   .++|...|+++++.+|+ .....+|
T Consensus       224 -------------~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          224 -------------ESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             -------------HHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             -------------HHHHHHHHHHHHhcCCc-HHHHHHH
Confidence                         89999999999999999 7665555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=1.9e-13  Score=146.88  Aligned_cols=170  Identities=9%  Similarity=0.063  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHhhhcch----------hhHHhhcc----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--C
Q 010864          116 NNAAMELINSVTGVDE----------EGRSRQRI----------LTFAAKRYANAIERNPEDYDALYNWALVLQESA--D  173 (498)
Q Consensus       116 ~~~A~~~~~~~~~~~~----------~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~  173 (498)
                      .++|++.+..++....          ......++          +++++..++++++.+|++..+|+.++.++..++  +
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            3466677776666652          22334555          999999999999999999999999999999999  5


Q ss_pred             cCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864          174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAVQLNWNSPQ  252 (498)
Q Consensus       174 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~Al~~~~~Al~l~P~~~~  252 (498)
                                    +++++++++++++++|.+..+|++.+.++..    .| .+++++       +++.++++.+|.+..
T Consensus       125 --------------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el-------~~~~~~I~~~p~n~s  179 (567)
T 1dce_A          125 --------------WARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEEL-------AFTDSLITRNFSNYS  179 (567)
T ss_dssp             --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHH-------HHHHTTTTTTCCCHH
T ss_pred             --------------HHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHH-------HHHHHHHHHCCCCcc
Confidence                          7999999999999999999999999999999    99 787777       799999999999999


Q ss_pred             HHHHHHHHHHHhcCcchHH----hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          253 ALNNWGLALQELSAIVPAR----EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       253 a~~~lg~~l~~~g~~~~a~----~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +|+++|.++..++....+.    -..+.+++|++++.+|+.++|++..+|+.++.++...++
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            9999999999975542221    123667999999999999999999999999999988776

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=2.7e-13  Score=144.17  Aligned_cols=163  Identities=13%  Similarity=0.088  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------hcCcCCCCCCCCchhhhHH-------HHHHHHHHHHH-hCCCC
Q 010864          141 TFAAKRYANAIERNPEDYDALYNWALVLQE-------SADNVSLDSTSPSKDALLE-------EACKKYDEATR-LCPTL  205 (498)
Q Consensus       141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-------~g~~~~~~~~~~~~~~~~~-------~A~~~~~~Al~-l~p~~  205 (498)
                      ..++..|++++..+|.++++|+++|..+..       .|+              ++       +|+..|++|++ ++|++
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~--------------~~~a~~~~~~A~~~~~~Al~~~~p~~  320 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD--------------MNNAKLFSDEAANIYERAISTLLKKN  320 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc--------------hhhhhhhhHHHHHHHHHHHHHhCccc
Confidence            478899999999999999999999999987       677              76       99999999997 89999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCcchH--------------
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLALQELSAIVPA--------------  270 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~~a--------------  270 (498)
                      ..+|+++|.++..    .|++++|.       ..|+++++++|.++ .+|.++|.++.+.|++++|              
T Consensus       321 ~~l~~~~~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~  389 (530)
T 2ooe_A          321 MLLYFAYADYEES----RMKYEKVH-------SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  389 (530)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHHh----cCCHHHHH-------HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence            9999999999999    99999999       68999999999985 6999999999999988766              


Q ss_pred             -----------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHH
Q 010864          271 -----------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA  339 (498)
Q Consensus       271 -----------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  339 (498)
                                 +...|++++|+..|+++++..|+++.+|.+++.++..+|+                   +..|..+|++
T Consensus       390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-------------------~~~Ar~~~~~  450 (530)
T 2ooe_A          390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-------------------DNNTRVLFER  450 (530)
T ss_dssp             THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-------------------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-------------------HhhHHHHHHH
Confidence                       1136788999999999999999999999999999999888                   8899999999


Q ss_pred             HHhcCCCH
Q 010864          340 AHALKPSY  347 (498)
Q Consensus       340 Al~l~p~~  347 (498)
                      ++...|.+
T Consensus       451 al~~~~~~  458 (530)
T 2ooe_A          451 VLTSGSLP  458 (530)
T ss_dssp             HHHSCCSC
T ss_pred             HHhccCCC
Confidence            99886544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.51  E-value=1.8e-13  Score=116.26  Aligned_cols=101  Identities=16%  Similarity=0.040  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      .++.+|.++..    .|++++|+       ..|+++++++|+++.+|+++|.++..+|++          ++|+.+|+++
T Consensus        19 ~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a   77 (121)
T 1hxi_A           19 NPMEEGLSMLK----LANLAEAA-------LAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHA   77 (121)
T ss_dssp             CHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHH
T ss_pred             hHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            47899999999    99999999       699999999999999999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       288 l~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      ++++|++..++++||.+|..+|+                   +.+|..+|+++++++|++.
T Consensus        78 l~l~P~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           78 RMLDPKDIAVHAALAVSHTNEHN-------------------ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999999999                   9999999999999999865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=1e-12  Score=110.21  Aligned_cols=109  Identities=22%  Similarity=0.256  Sum_probs=105.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|+++.+++.+|.++...|+              +++|+..|++++.++|++..+++++|
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------------YAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .++..    .|++++|+       ..|+++++++|++..++.++|.++..+|++
T Consensus        88 ~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSS----LNKHVEAV-------AYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH----hCCHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999    99999999       699999999999999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.50  E-value=2.5e-13  Score=137.77  Aligned_cols=149  Identities=13%  Similarity=0.084  Sum_probs=123.7

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHH
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE-------DYDALYNWALVL  168 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~~  168 (498)
                      ..+++++|+..+.++....                +..+...|++++|+.+|++++++.+.       .+.+++++|.+|
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            4577888888888876553                33467789999999999999987543       356889999999


Q ss_pred             HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      ..+|+              +++|+..|++++.+.+.      ...+++++|.+|..    +|++++|+..|++|+..+++
T Consensus       193 ~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          193 DDFKH--------------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence            99999              99999999999998431      35689999999999    99999999766666665554


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       243 Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      .  .+|....+++++|.++..+|++          ++|+.+|++++++
T Consensus       255 ~--~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~  290 (378)
T 3q15_A          255 K--VPDLLPKVLFGLSWTLCKAGQT----------QKAFQFIEEGLDH  290 (378)
T ss_dssp             H--CGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             h--CChhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHH
Confidence            3  5677899999999999999999          8888888888887

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.50  E-value=4.2e-14  Score=139.84  Aligned_cols=171  Identities=18%  Similarity=0.175  Sum_probs=136.5

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHh-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHH
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSR-QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA  191 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A  191 (498)
                      ++++.+|..++.++.......+++ .+++++|+.+|.++              |.+|...|+              +++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~--------------~~~A   55 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQ--------------LEQA   55 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTC--------------HHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCC--------------HHHH
Confidence            356677777777665543222233 57788888888776              678999999              9999


Q ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Q 010864          192 CKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQEL  264 (498)
Q Consensus       192 ~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~  264 (498)
                      +.+|.+++++.+..      ..++.++|.+|..    +|++++|+..|++|+..+.+.-  ++ ....+++++|.+|.. 
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-  128 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-  128 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-
Confidence            99999999996542      5689999999999    9999999977777776654310  11 135789999999998 


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA  338 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  338 (498)
                      |++          ++|+.+|++|+++.+..      ..+++++|.+|..+|+                   +.+|+.+|+
T Consensus       129 g~~----------~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~  179 (307)
T 2ifu_A          129 LDL----------SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-------------------FDEAAASLQ  179 (307)
T ss_dssp             TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHH
T ss_pred             CCH----------HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHH
Confidence            999          99999999999997754      5789999999999999                   999999999


Q ss_pred             HHHhcCCCH
Q 010864          339 AAHALKPSY  347 (498)
Q Consensus       339 ~Al~l~p~~  347 (498)
                      +++.+.|++
T Consensus       180 ~al~~~~~~  188 (307)
T 2ifu_A          180 KEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999986654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.49  E-value=1.2e-14  Score=146.18  Aligned_cols=148  Identities=20%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-----------------HHHH
Q 010864          148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----------------DAFY  210 (498)
Q Consensus       148 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----------------~a~~  210 (498)
                      ...++..+..+..++.+|.+++..|+              |++|+..|++++.+.|++.                 .+|+
T Consensus       169 ~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~  234 (338)
T 2if4_A          169 DMTVEERIGAADRRKMDGNSLFKEEK--------------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL  234 (338)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHTCSSSC--------------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHH
Confidence            33334445567889999999999999              9999999999999999987                 4999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                      ++|.+|..    +|++++|+       .+|+++++++|++..+++++|.+|..+|++          ++|+.+|++++++
T Consensus       235 nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l  293 (338)
T 2if4_A          235 NIAACLIK----LKRYDEAI-------GHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHT----TTCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC-
T ss_pred             HHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHH
Confidence            99999999    99999999       699999999999999999999999999999          9999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      +|++..++.+|+.+......                  ....+...|.+++...|++.
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~------------------~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKA------------------LYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhCCCCCCC
Confidence            99999999999988655443                  15667778899999988775

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.49  E-value=4.2e-13  Score=114.84  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=105.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHH
Q 010864          200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  279 (498)
Q Consensus       200 ~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~  279 (498)
                      ..+|.++..++++|.++..    .|++++|+       ..|++++.++|++..+++++|.++..+|++          ++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~   61 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFV----GRKYPEAA-------ACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQ   61 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HH
T ss_pred             CCccccHHHHHHHHHHHHH----hCcHHHHH-------HHHHHHHhhCcCcHHHHHHHHHHHHHhcCH----------HH
Confidence            4578899999999999999    99999999       699999999999999999999999999999          99


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 010864          280 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS-----YSVYSSAL  354 (498)
Q Consensus       280 Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-----~~~~~~~l  354 (498)
                      |+.+|+++++++|+++.+++++|.+|..+|+                   +..|..+|.++++++|+     +......+
T Consensus        62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l  122 (137)
T 3q49_B           62 ALADCRRALELDGQSVKAHFFLGQCQLEMES-------------------YDEAIANLQRAYSLAKEQRLNFGDDIPSAL  122 (137)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHChhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999                   99999999999999998     44444444


Q ss_pred             HH
Q 010864          355 RL  356 (498)
Q Consensus       355 ~~  356 (498)
                      ..
T Consensus       123 ~~  124 (137)
T 3q49_B          123 RI  124 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.49  E-value=7.8e-15  Score=154.55  Aligned_cols=118  Identities=16%  Similarity=0.119  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      +.+++++|.++...|+              +++|++.|++|++++|++..+++++|.+|..    +|++++|+       
T Consensus         6 a~~~~~lg~~~~~~g~--------------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------   60 (477)
T 1wao_1            6 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------   60 (477)
T ss_dssp             HTTSSSSSSSTTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH-------
Confidence            4456677777777777              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcch
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAE  310 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~--~~~~g~  310 (498)
                      ..|+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|++..++.+++.+  +..+|+
T Consensus        61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~  125 (477)
T 1wao_1           61 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA  125 (477)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999          999999999999999999999999999  777676

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=3.1e-13  Score=126.26  Aligned_cols=154  Identities=18%  Similarity=0.058  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010864          142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  221 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~  221 (498)
                      +|+..|+++.+.  .++.+++++|.+|...++              +++|+.+|+++++.  +++.++++||.+|..   
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~---   62 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGD--------------YQKAEYWAQKAAAQ--GDGDALALLAQLKIR---   62 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS---
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc---
Confidence            578899999876  899999999999999999              99999999999875  689999999999975   


Q ss_pred             HcC---CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchHHhhhhhHHHHHHHHHHHHHhcC--
Q 010864          222 MRG---RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQF--  292 (498)
Q Consensus       222 ~~g---~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P--  292 (498)
                       .|   ++++|+       .+|++++  +++++.++++||.+|..    .+++          ++|+.+|+++++..+  
T Consensus        63 -~g~~~~~~~A~-------~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~----------~~A~~~~~~A~~~~~~~  122 (212)
T 3rjv_A           63 -NPQQADYPQAR-------QLAEKAV--EAGSKSGEIVLARVLVNRQAGATDV----------AHAITLLQDAARDSESD  122 (212)
T ss_dssp             -STTSCCHHHHH-------HHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCH----------HHHHHHHHHHTSSTTSH
T ss_pred             -CCCCCCHHHHH-------HHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCH----------HHHHHHHHHHHHcCCCc
Confidence             43   788888       5777775  46799999999999987    6676          999999999999988  


Q ss_pred             CCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          293 DFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +++.++++||.+|..    .++                   +.+|..+|+++.++ +.+......+..
T Consensus       123 ~~~~a~~~Lg~~y~~g~g~~~d-------------------~~~A~~~~~~A~~~-~~~~~a~~~Lg~  170 (212)
T 3rjv_A          123 AAVDAQMLLGLIYASGVHGPED-------------------DVKASEYFKGSSSL-SRTGYAEYWAGM  170 (212)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSCC-------------------HHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            469999999999988    555                   89999999999998 444433333333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.48  E-value=2.2e-13  Score=124.41  Aligned_cols=163  Identities=9%  Similarity=0.040  Sum_probs=129.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh------CCCCHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDA  208 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------~p~~~~a  208 (498)
                      ...|++++|...++......+....+++.+|.++...|+              +++|+..|++++.+      .+....+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~   68 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------FDEARASFQALQQQAQKSGDHTAEHRA   68 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            457899999996555544333678999999999999999              99999999999995      4456789


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      ++++|.++..    +|++++|+..+++|+..+++ ...++ ....+++++|.++..+|++          ++|+.+|+++
T Consensus        69 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a  133 (203)
T 3gw4_A           69 LHQVGMVERM----AGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDL----------AGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence            9999999999    99999999777777666552 11122 3467899999999999999          9999999999


Q ss_pred             HHhcC--CC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          288 IQLQF--DF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       288 l~l~P--~~----~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      +++.+  ++    ..++.++|.++..+|+                   +.+|..++.+++++..
T Consensus       134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          134 LVYAQQADDQVAIACAFRGLGDLAQQEKN-------------------LLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHCcC-------------------HHHHHHHHHHHHHHHH
Confidence            98743  22    3457899999999999                   8999999999988744

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=4.7e-13  Score=112.45  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      ..+.+++.+|.++...|+              +++|+..|++++.++|++..+++++|.++..    .|++++|+     
T Consensus         2 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~-----   58 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR-----   58 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHH-----
Confidence            346789999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          236 ATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       236 Al~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                        ..|++++.++|++       ..+++++|.++...|++          ++|+.+|++++++.| +...+..++.++..+
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           59 --ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             --HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence              5777777777766       89999999999999999          999999999999999 589999999988776


Q ss_pred             ch
Q 010864          309 AE  310 (498)
Q Consensus       309 g~  310 (498)
                      ++
T Consensus       126 ~~  127 (131)
T 1elr_A          126 KE  127 (131)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.48  E-value=7.3e-14  Score=128.48  Aligned_cols=148  Identities=11%  Similarity=0.034  Sum_probs=118.8

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      .+..+...+.....+|+              +++|.+.+.......+..+..+.++|.++..    .|++++|+      
T Consensus         3 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~------   58 (198)
T 2fbn_A            3 SSHHHHHHSSGRENLYF--------------QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK----KNEINEAI------   58 (198)
T ss_dssp             ---------------------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             Ccccccchhhhhhhhhh--------------ccccCchhhCCHHHHHHHHHHHHHHHHHHHH----cCCHHHHH------
Confidence            34445566666777777              9999888888888788888999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          237 TKNYEKAVQLNWNSP----------------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       237 l~~~~~Al~l~P~~~----------------~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                       ..|++++.+.|.++                .+++++|.+|..+|++          ++|+.+|+++++++|++..++++
T Consensus        59 -~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~  127 (198)
T 2fbn_A           59 -VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY----------PKAIDHASKVLKIDKNNVKALYK  127 (198)
T ss_dssp             -HHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             -HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCcccHHHHHH
Confidence             68999999998887                8999999999999999          99999999999999999999999


Q ss_pred             HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      +|.+|..+|+                   +..|..+|+++++++|++......+..+.
T Consensus       128 lg~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A          128 LGVANMYFGF-------------------LEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHTC-------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccc-------------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            9999999999                   99999999999999999986666655544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=3.5e-13  Score=113.89  Aligned_cols=108  Identities=23%  Similarity=0.269  Sum_probs=103.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++++|.+|...|+              +++|+..|+++++++|++..+++++|
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------------FQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            5668999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .++..    +|++++|+       ..|+++++++|++..++.+++.++..+|+
T Consensus        92 ~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEA----MKDYTKAM-------DVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHH----HhhHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999    99999999       69999999999999999999999998874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=2e-13  Score=111.57  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      ++|+++.+++.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    +|++++|+  
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~--   60 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAV--   60 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCCCcHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHH--
Confidence            468899999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh-cCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          233 WKQATKNYEKAVQLNWN--SPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~-g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                           ..|+++++.+|+  +..+++++|.++..+ |++          ++|+.+|++++...|.+
T Consensus        61 -----~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           61 -----DCYNYVINVIEDEYNKDVWAAKADALRYIEGKE----------VEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             -----HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS----------HHHHHHHHHHGGGCCCC
T ss_pred             -----HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHhhcccCC
Confidence                 699999999999  999999999999999 999          99999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=4.7e-13  Score=118.84  Aligned_cols=122  Identities=10%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHhcCcchHHhh
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-----------LNWNSPQALNNWGLALQELSAIVPAREK  273 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-----------l~P~~~~a~~~lg~~l~~~g~~~~a~~~  273 (498)
                      .+..+.++|..+..    .|++++|+..|++|+..+.....           .+|.+..+++++|.+|..+|++      
T Consensus        10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~------   79 (162)
T 3rkv_A           10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL------   79 (162)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH------
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH------
Confidence            35678999999999    99999999655555555443221           1677789999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH-HHHH
Q 010864          274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VYSS  352 (498)
Q Consensus       274 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~~~~  352 (498)
                          ++|+.+|+++++++|+++.+++++|.+|..+|+                   +..|..+|.++++++|++. .+..
T Consensus        80 ----~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-------------------~~~A~~~~~~al~l~p~~~~~~~~  136 (162)
T 3rkv_A           80 ----HEAEETSSEVLKREETNEKALFRRAKARIAAWK-------------------LDEAEEDLKLLLRNHPAAASVVAR  136 (162)
T ss_dssp             ----HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-------------------HHHHHHHHHHHHhcCCCCHHHHHH
Confidence                999999999999999999999999999999999                   9999999999999999998 6666


Q ss_pred             HHHHHHc
Q 010864          353 ALRLVRS  359 (498)
Q Consensus       353 ~l~~~~~  359 (498)
                      .+..+..
T Consensus       137 ~l~~~~~  143 (162)
T 3rkv_A          137 EMKIVTE  143 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=6.1e-14  Score=147.69  Aligned_cols=127  Identities=19%  Similarity=0.188  Sum_probs=115.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +..+|++++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+..|+++++++|++..+++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchHHhhhhhHHHHHHHHH------
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFR------  285 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~--l~~~g~~~~a~~~~~~~~~Ai~~~~------  285 (498)
                      .+|..    +|++++|+       ..|+++++++|++..++.+++.+  +..+|++          ++|+..|+      
T Consensus        82 ~~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~----------~~A~~~~~~~~~~~  140 (477)
T 1wao_1           82 ASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKRSVV  140 (477)
T ss_dssp             HHHHH----HTCHHHHH-------HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH----------CCC------CCSTT
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHhccccccchhH
Confidence            99999    99999999       69999999999999999999999  8888888          99999999      


Q ss_pred             -----HHHHhcCCCH
Q 010864          286 -----AAIQLQFDFH  295 (498)
Q Consensus       286 -----~Al~l~P~~~  295 (498)
                           ++++++|++.
T Consensus       141 ~~~~~~al~~~~~~~  155 (477)
T 1wao_1          141 DSLDIESMTIEDEYS  155 (477)
T ss_dssp             TCCTTSSCCCCTTCC
T ss_pred             hhhhhhhcccccccc
Confidence                 8888877653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=1.6e-12  Score=109.97  Aligned_cols=116  Identities=14%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      ++++.+|.++...|+              +++|+..|+++++.+|++.   .+++++|.++..    .|++++|+     
T Consensus         3 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~-----   59 (129)
T 2xev_A            3 RTAYNVAFDALKNGK--------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAE-----   59 (129)
T ss_dssp             CCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHH-----
Confidence            467899999999999              9999999999999999988   899999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          236 ATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       236 Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                        ..|++++..+|++   +.+++++|.++..+|++          ++|+..|+++++..|++..+...+..+-...+
T Consensus        60 --~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           60 --AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN----------TEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             --HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             --HHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence              6999999999999   99999999999999999          99999999999999999988776666554443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.45  E-value=1.7e-12  Score=130.04  Aligned_cols=174  Identities=11%  Similarity=0.015  Sum_probs=146.1

Q ss_pred             HHHHHHHHHhhhcch----------hhHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-CcCCCCCCCCc
Q 010864          117 NAAMELINSVTGVDE----------EGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQES-A-DNVSLDSTSPS  183 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~----------~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g-~~~~~~~~~~~  183 (498)
                      ++|+.++..++..+.          ......+ .+++++.+++++|..+|++..+|+.++.++..+ + +          
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~----------  140 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD----------  140 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC----------
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC----------
Confidence            456777777776662          2234456 599999999999999999999999999999998 7 7          


Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e-A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                          ++++++++.++++++|++..+|+..+.++..    .|+++. ..+.+.+++..+.++++.+|.|..+|++++.++.
T Consensus       141 ----~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          141 ----PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             ----CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                8999999999999999999999999999998    776651 1234456668999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED  311 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~  311 (498)
                      .++++.   .....+++++++++++|.++|++..+|+++..++...|+.
T Consensus       213 ~l~~~~---~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          213 SRPGAE---TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TSTTCC---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             hccccc---cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            998720   1122349999999999999999999999999999887764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=4.6e-12  Score=104.22  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=99.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|+++.+++++|.++...|+              +++|+..|++++.++|++..+++++|
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      .++..    +|++++|+       ..|+++++.+|++..++.+++.+..
T Consensus        80 ~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           80 AALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHH----HhhHHHHH-------HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999    99999999       6999999999999999999998753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=5e-12  Score=104.99  Aligned_cols=107  Identities=31%  Similarity=0.391  Sum_probs=102.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+..|++++..+|++..+++.+|.++...|+              +++|+..|++++.++|++..+++++|
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la   84 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLG   84 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            5678999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      .++..    .|++++|+       ..|+++++.+|++..++.++|.++...|
T Consensus        85 ~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           85 NAYYK----QGDYDEAI-------EYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH----hcCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999    99999999       6999999999999999999999998765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.43  E-value=1.3e-12  Score=132.97  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----------------LCPTLHDAFYNWAIAISDRAK  221 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~----------------l~p~~~~a~~~lg~~~~~~~~  221 (498)
                      +..+..+|..++..|+              |++|+..|+++++                ++|.+..+|+++|.+|..   
T Consensus       223 a~~~~~~g~~~~~~g~--------------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---  285 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK---  285 (370)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            4678999999999999              9999999999999                788889999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864          222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL  301 (498)
Q Consensus       222 ~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~L  301 (498)
                       +|++++|+       .+|+++++++|+++.+++++|.+|..+|++          ++|+..|++|++++|++..++..+
T Consensus       286 -~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          286 -MSDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             -TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -ccCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence             99999999       699999999999999999999999999999          999999999999999999999999


Q ss_pred             HHHHHHcch
Q 010864          302 GTVLYGLAE  310 (498)
Q Consensus       302 g~~~~~~g~  310 (498)
                      +.++..+++
T Consensus       348 ~~~~~~~~~  356 (370)
T 1ihg_A          348 LKVKQKIKA  356 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.43  E-value=8.8e-12  Score=131.05  Aligned_cols=151  Identities=22%  Similarity=0.187  Sum_probs=110.9

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN  211 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-----g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~  211 (498)
                      .+++++|+..|+++++.  +++.+++++|.+|...     ++              +++|+..|+++++.  ++..++++
T Consensus       272 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~--------------~~~A~~~~~~a~~~--~~~~a~~~  333 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN--------------REQAISWYTKSAEQ--GDATAQAN  333 (490)
T ss_dssp             SCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC--------------HHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC--------------HHHHHHHHHHHHhc--CCHHHHHH
Confidence            46666666666666543  5566666777666665     45              77777777777664  45566777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchHHhhhhhHHHHHHHHHHH
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      ||.+|..    .|.    .+.+++|+.+|+++++.  +++.++++||.+|..    .+++          ++|+.+|++|
T Consensus       334 lg~~y~~----~g~----~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~A  393 (490)
T 2xm6_A          334 LGAIYFR----LGS----EEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE----------QQAAIWMRKA  393 (490)
T ss_dssp             HHHHHHH----SCC----HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHH
T ss_pred             HHHHHHh----CCC----cccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHH
Confidence            7777766    541    11234445778887776  678899999998888    6777          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          288 IQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       288 l~l~P~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                      ++.  +++.++++||.+|..    .++                   +.+|..+|+++++.+|+
T Consensus       394 ~~~--~~~~a~~~Lg~~y~~g~g~~~d-------------------~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          394 AEQ--GLSAAQVQLGEIYYYGLGVERD-------------------YVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHHHHHHHHHHHCC
T ss_pred             HhC--CCHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHHCCCC
Confidence            886  468999999999987    666                   89999999999999955

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=1.5e-12  Score=136.21  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=102.4

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  197 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~  197 (498)
                      .++++|+|++|+..|+++++++|.+               ..+|+++|.+|..+|+              |++|+.+|++
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~~~  342 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------------YTKAVECCDK  342 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHH
Confidence            3678999999999999999999999               7999999999999999              9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       198 Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +++++|++..+|+++|.+|..    +|++++|+       ..|+++++++|++..++.+++.++..++++
T Consensus       343 al~~~p~~~~a~~~~g~a~~~----~g~~~~A~-------~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999    99999999       799999999999999999999999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.42  E-value=2e-13  Score=137.21  Aligned_cols=128  Identities=14%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~-----------------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      +...|+|++|+.+|++++.++|++.                 .+|+++|.+|..+|+              |++|+.+|+
T Consensus       189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------------~~~A~~~~~  254 (338)
T 2if4_A          189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------------YDEAIGHCN  254 (338)
T ss_dssp             TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------------CHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHH
Confidence            5778999999999999999999987                 499999999999999              999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCcchHHhhhh
Q 010864          197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ-ELSAIVPAREKQT  275 (498)
Q Consensus       197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~~a~~~~~  275 (498)
                      ++++++|++..+|+++|.+|..    +|++++|+       .+|+++++++|++..++.+|+.+.. ..+..        
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~-------~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~--------  315 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAE----LGQMDSAR-------DDFRKAQKYAPDDKAIRRELRALAEQEKALY--------  315 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHTTC-------------------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999    99999999       6999999999999999999999854 44555        


Q ss_pred             hHHHHHHHHHHHHHhcCCCHH
Q 010864          276 IVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       276 ~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                        +++...|++++...|+++.
T Consensus       316 --~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          316 --QKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------
T ss_pred             --HHHHHHHHHhhCCCCCCCC
Confidence              8899999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=4.5e-12  Score=109.24  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=110.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864          200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       200 ~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                      ..+|.+...++.+|..+..    .|++++|+       ..|+++++++|++   ..+++++|.+|..+|++         
T Consensus        22 ~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------   81 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFK----CGDYGGAL-------AAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------   81 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred             ccchHHHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHHcccchHHHHHHHHHHHHHHHHccH---------
Confidence            3567899999999999999    99999999       6999999999998   89999999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864          277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~  356 (498)
                       ++|+.+|+++++++|++..+++++|.+|..+|+                   +.+|..+|+++++++|++..+...+..
T Consensus        82 -~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------------~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A           82 -DKAETEASKAIEKDGGDVKALYRRSQALEKLGR-------------------LDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             -HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence             999999999999999999999999999999999                   999999999999999999877776655


Q ss_pred             HH
Q 010864          357 VR  358 (498)
Q Consensus       357 ~~  358 (498)
                      +.
T Consensus       142 ~~  143 (148)
T 2dba_A          142 IS  143 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=6e-12  Score=133.70  Aligned_cols=177  Identities=8%  Similarity=-0.033  Sum_probs=149.7

Q ss_pred             HHHHHHHHhhh-cc----------hhhHHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCCCCchh
Q 010864          118 AAMELINSVTG-VD----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKD  185 (498)
Q Consensus       118 ~A~~~~~~~~~-~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~~~~~~  185 (498)
                      +|...+.+++. ..          ...+.+.|++++|+..|+++++++|.++ .+|.++|.++...|+            
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------------  371 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG------------  371 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC------------
Confidence            78888888875 33          1234567899999999999999999886 689999999998888            


Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIA-ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~-~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                        +++|+..|++|++..|.....+...+.+ +..    .|++++|.       ..|+++++.+|+++.+|.+++.++...
T Consensus       372 --~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~~~A~-------~~~e~al~~~p~~~~~~~~~~~~~~~~  438 (530)
T 2ooe_A          372 --IKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDKSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHL  438 (530)
T ss_dssp             --HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             --HHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCChhHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence              9999999999999988877777766655 335    88988888       688899999999999999999999999


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHH
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHR----AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA  340 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~----a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  340 (498)
                      |++          ++|...|++++...|.++.    +|..........|+                   ...+..++.++
T Consensus       439 g~~----------~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-------------------~~~~~~~~~r~  489 (530)
T 2ooe_A          439 NED----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-------------------LASILKVEKRR  489 (530)
T ss_dssp             TCH----------HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-------------------HHHHHHHHHHH
T ss_pred             CCH----------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHH
Confidence            999          9999999999998766544    88888888888898                   78889999999


Q ss_pred             HhcCCCHH
Q 010864          341 HALKPSYS  348 (498)
Q Consensus       341 l~l~p~~~  348 (498)
                      ++..|++.
T Consensus       490 ~~~~p~~~  497 (530)
T 2ooe_A          490 FTAFREEY  497 (530)
T ss_dssp             HHHTHHHH
T ss_pred             HHHCchhc
Confidence            99998644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=4.5e-13  Score=112.44  Aligned_cols=107  Identities=10%  Similarity=0.060  Sum_probs=91.9

Q ss_pred             hhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+|++++|+.+|++++++   +|+++.+++++|.+|..+|+              +++|+..|+++++++|++..+++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l   67 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------------YRKAEAVLANGVKQFPNHQALRVFY   67 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchHHHHHH
Confidence            368999999999999999   69999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      |.++..    +|++++|+       ..|+++++.+|+++........+....+.+
T Consensus        68 ~~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           68 AMVLYN----LGRYEQGV-------ELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHH----HTCHHHHH-------HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999    99999999       689999999999988766555554444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=1.1e-12  Score=107.22  Aligned_cols=107  Identities=19%  Similarity=0.132  Sum_probs=101.8

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                      ++|++..+++++|.++..    .|++++|+       ..|+++++++|.+..+++++|.++..+|++          ++|
T Consensus         1 l~p~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A   59 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYD----AGNYTESI-------DLFEKAIQLDPEESKYWLMKGKALYNLERY----------EEA   59 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHS----SCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHH
T ss_pred             CCCCcHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHccCH----------HHH
Confidence            468889999999999999    99999999       689999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHc-chhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          281 ISKFRAAIQLQFD--FHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       281 i~~~~~Al~l~P~--~~~a~~~Lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      +.+|++++++.|+  +..+++++|.++..+ |+                   +.+|..++.+++...|.+
T Consensus        60 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           60 VDCYNYVINVIEDEYNKDVWAAKADALRYIEGK-------------------EVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC-------------------SHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHhhcccCC
Confidence            9999999999999  999999999999999 98                   899999999999998864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=7.2e-12  Score=126.22  Aligned_cols=164  Identities=11%  Similarity=-0.022  Sum_probs=138.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---  205 (498)
                      +...|++++|+..+++++...|.+.     .+++++|.++...|+              +++|+..|++++.+.+..   
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--------------LTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHHHHHhcCcH
Confidence            4568999999999999999987653     368899999999999              999999999999986543   


Q ss_pred             ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          206 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       206 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                         ..+++++|.++..    +|++++|+..|++++..+++.-.. .|....++.++|.++...|++          ++|+
T Consensus        90 ~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~  155 (373)
T 1hz4_A           90 HYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL----------DEAE  155 (373)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence               2457899999999    999999998777777666543211 145677899999999999999          9999


Q ss_pred             HHHHHHHHhcCC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          282 SKFRAAIQLQFD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       282 ~~~~~Al~l~P~-----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      .+|++++++.+.     ...++.++|.++...|+                   +.+|..++++++.+.
T Consensus       156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-------------------LDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHH
Confidence            999999998765     35688999999999999                   899999999998873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.39  E-value=7.4e-13  Score=111.14  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          186 ALLEEACKKYDEATRL---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l---~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      |++++|+..|++++++   +|++..+++++|.+|..    +|++++|+       ..|+++++++|+++.+++++|.++.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAE-------AVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence            4499999999999999   69999999999999999    99999999       6999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      .+|++          ++|+..|++++++.|+++.+......+....
T Consensus        73 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~  108 (117)
T 3k9i_A           73 NLGRY----------EQGVELLLKIIAETSDDETIQSYKQAILFYA  108 (117)
T ss_dssp             HHTCH----------HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred             HcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999          9999999999999999998766555444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=7e-12  Score=105.89  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .+++++|.++..    .|++++|+       ..|+++++.+|++.   .+++++|.++...|++          ++|+..
T Consensus         3 ~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~   61 (129)
T 2xev_A            3 RTAYNVAFDALK----NGKYDDAS-------QLFLSFLELYPNGVYTPNALYWLGESYYATRNF----------QLAEAQ   61 (129)
T ss_dssp             CCHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH----------HHHHHH
T ss_pred             HHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH----------HHHHHH
Confidence            457899999999    99999999       68999999999988   8999999999999999          999999


Q ss_pred             HHHHHHhcCCC---HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          284 FRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       284 ~~~Al~l~P~~---~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      |+++++..|++   +.+++++|.+|..+|+                   +.+|..+|+++++..|++.....+...+..+
T Consensus        62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-------------------NTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99999999999   8999999999999999                   9999999999999999999777766655543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.37  E-value=7.1e-11  Score=124.10  Aligned_cols=150  Identities=19%  Similarity=0.210  Sum_probs=113.0

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+++++|+.+|+++++.  .++.+++++|.+|..    .++              +++|+..|+++++.  ++..++++|
T Consensus       236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d--------------~~~A~~~~~~a~~~--~~~~a~~~L  297 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE--------------PLKALEWYRKSAEQ--GNSDGQYYL  297 (490)
T ss_dssp             CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC--------------HHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC--------------HHHHHHHHHHHHHc--CCHHHHHHH
Confidence            45666777777766654  456677777777766    555              88888888887654  567788888


Q ss_pred             HHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          213 AIAISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       213 g~~~~~~~~~~-----g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      |.+|..    .     +++++|+       ..|+++++.  +++.+++++|.+|...|.       .+++++|+.+|+++
T Consensus       298 g~~y~~----~~~g~~~~~~~A~-------~~~~~a~~~--~~~~a~~~lg~~y~~~g~-------~~~~~~A~~~~~~a  357 (490)
T 2xm6_A          298 AHLYDK----GAEGVAKNREQAI-------SWYTKSAEQ--GDATAQANLGAIYFRLGS-------EEEHKKAVEWFRKA  357 (490)
T ss_dssp             HHHHHH----CBTTBCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHSCC-------HHHHHHHHHHHHHH
T ss_pred             HHHHHc----CCCCCcCCHHHHH-------HHHHHHHhc--CCHHHHHHHHHHHHhCCC-------cccHHHHHHHHHHH
Confidence            888877    6     7777777       566666655  467888888888887652       12449999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          288 IQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       288 l~l~P~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      ++.  +++.++++||.+|..    .++                   +.+|..+|+++.+...
T Consensus       358 ~~~--~~~~a~~~Lg~~y~~g~g~~~~-------------------~~~A~~~~~~A~~~~~  398 (490)
T 2xm6_A          358 AAK--GEKAAQFNLGNALLQGKGVKKD-------------------EQQAAIWMRKAAEQGL  398 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHHHHHHHHHTTC
T ss_pred             HHC--CCHHHHHHHHHHHHcCCCCCCC-------------------HHHHHHHHHHHHhCCC
Confidence            987  679999999999988    555                   8999999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.36  E-value=3.3e-11  Score=117.78  Aligned_cols=149  Identities=10%  Similarity=0.019  Sum_probs=117.5

Q ss_pred             hhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 010864          113 AEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQE  170 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~  170 (498)
                      .+++++|+..+...+...                +..+...|++++|+.+|++++.+.+..      ..+++++|.+|..
T Consensus        88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            456666666665544322                122456789999999999999876544      6799999999999


Q ss_pred             hcCcCCCCCCCCchhhhHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864          171 SADNVSLDSTSPSKDALLEEACKKYDEATR---LCPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  243 (498)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~---l~p~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A  243 (498)
                      +|+              +++|+..|++++.   ..|++.    .+++++|.+|..    +|++++|++.|++|+..... 
T Consensus       168 ~~~--------------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~-  228 (293)
T 2qfc_A          168 NGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCR-  228 (293)
T ss_dssp             TTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH-
T ss_pred             cCC--------------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHh-
Confidence            999              9999999999994   466643    689999999999    99999999877777666532 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH-HHHHHHHHHh
Q 010864          244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQL  290 (498)
Q Consensus       244 l~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A-i~~~~~Al~l  290 (498)
                      .........+++++|.+|..+|++          ++| ..+|++|+.+
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~----------~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYE----------EAEIEDAYKKASFF  266 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHH
Confidence            122222478999999999999999          999 7889999976

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.35  E-value=3.3e-11  Score=125.76  Aligned_cols=163  Identities=14%  Similarity=0.094  Sum_probs=127.1

Q ss_pred             HHhhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864          134 RSRQR---ILTFAAKRYANAIERNPEDYDALYNWALVLQES----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH  206 (498)
Q Consensus       134 ~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  206 (498)
                      +...|   ++++|+..|+++++..+..+..++++|.+|...    ++              +++|+.+|+++.   |+++
T Consensus       186 ~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d--------------~~~A~~~~~~aa---~g~~  248 (452)
T 3e4b_A          186 YQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD--------------EKTAQALLEKIA---PGYP  248 (452)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC--------------HHHHHHHHHHHG---GGST
T ss_pred             HHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC--------------HHHHHHHHHHHc---CCCH
Confidence            34456   999999999999999999999999999999654    34              999999999997   8999


Q ss_pred             HHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          207 DAFYNWAIAIS---DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       207 ~a~~~lg~~~~---~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .++++||.+|.   .    .+++++|+       .+|+++.+.  +++.++++||.+|. .|.-     ...++++|+.+
T Consensus       249 ~a~~~Lg~~~~~~~~----~~d~~~A~-------~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g-----~~~d~~~A~~~  309 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPE----LGDVEQMM-------KYLDNGRAA--DQPRAELLLGKLYY-EGKW-----VPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHHHHHHHSGG----GCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHH-HCSS-----SCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC----CCCHHHHH-------HHHHHHHHC--CCHHHHHHHHHHHH-cCCC-----CCCCHHHHHHH
Confidence            99999999943   4    78888888       577777754  58999999999998 5610     11233999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       284 ~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                      |++|.   ++++.++++||.+|.. |.     +.         ...+.+|..+|+++.+.......+
T Consensus       310 ~~~Aa---~g~~~A~~~Lg~~y~~-G~-----g~---------~~d~~~A~~~~~~Aa~~g~~~A~~  358 (452)
T 3e4b_A          310 FEKAV---GREVAADYYLGQIYRR-GY-----LG---------KVYPQKALDHLLTAARNGQNSADF  358 (452)
T ss_dssp             HHTTT---TTCHHHHHHHHHHHHT-TT-----TS---------SCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred             HHHHh---CCCHHHHHHHHHHHHC-CC-----CC---------CcCHHHHHHHHHHHHhhChHHHHH
Confidence            99998   9999999999988876 32     00         011678888888887765444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.35  E-value=7.2e-12  Score=127.46  Aligned_cols=110  Identities=16%  Similarity=0.140  Sum_probs=105.6

Q ss_pred             hHHhhccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIE----------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~----------------~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      .+.+.|++++|+..|+++++                ++|.+..+|+++|.+|..+|+              +++|+.+|+
T Consensus       232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~~  297 (370)
T 1ihg_A          232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDSCL  297 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------------HHHHHHHHH
Confidence            36789999999999999999                788889999999999999999              999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      ++++++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..++..++.++..++++
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~-------~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999    99999999       699999999999999999999999999988

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=3e-11  Score=121.64  Aligned_cols=143  Identities=14%  Similarity=0.003  Sum_probs=112.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-----
Q 010864          134 RSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----  202 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-----  202 (498)
                      +...|++++|+..|++++.+.+..      ..+++++|.++..+|+              +++|+..|++++++.     
T Consensus        63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~--------------~~~A~~~~~~al~~~~~~~~  128 (373)
T 1hz4_A           63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF--------------LQTAWETQEKAFQLINEQHL  128 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHhcc
Confidence            566899999999999999876543      2447899999999999              999999999999985     


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCcchHHhhh
Q 010864          203 ---PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAIVPAREKQ  274 (498)
Q Consensus       203 ---p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~~a~~~~  274 (498)
                         |....++.++|.++..    +|++++|+.       .|++++.+.+.     ...++.++|.++...|++       
T Consensus       129 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~-------~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~-------  190 (373)
T 1hz4_A          129 EQLPMHEFLVRIRAQLLWA----WARLDEAEA-------SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL-------  190 (373)
T ss_dssp             TTSTHHHHHHHHHHHHHHH----TTCHHHHHH-------HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH-------
T ss_pred             ccCcHHHHHHHHHHHHHHH----hcCHHHHHH-------HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH-------
Confidence               3456788999999999    999999995       66666666553     457899999999999999       


Q ss_pred             hhHHHHHHHHHHHHHhcCC--CHHHHH-----HHHHHHHHcchh
Q 010864          275 TIVRTAISKFRAAIQLQFD--FHRAIY-----NLGTVLYGLAED  311 (498)
Q Consensus       275 ~~~~~Ai~~~~~Al~l~P~--~~~a~~-----~Lg~~~~~~g~~  311 (498)
                         ++|+.++++++++.+.  ++..+.     .++.++...|+.
T Consensus       191 ---~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  231 (373)
T 1hz4_A          191 ---DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  231 (373)
T ss_dssp             ---HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence               9999999998887432  211111     234456677764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.33  E-value=8.4e-12  Score=108.30  Aligned_cols=140  Identities=15%  Similarity=0.085  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      ..++..+|.++...|+              +++|+..|++++++.+..      ..+++++|.++..    +|++++|+.
T Consensus         9 ~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~   70 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASE   70 (164)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence            5678999999999999              999999999999986542      2589999999999    999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 010864          232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFHRAIYNLGTVL  305 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P------~~~~a~~~Lg~~~  305 (498)
                      .|++++..+.+. ...+....+++++|.++..+|++          ++|+.+|++++++.+      ....++.++|.++
T Consensus        71 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           71 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence            777776665542 11112367899999999999999          999999999998843      2357899999999


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP  345 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p  345 (498)
                      ..+|+                   +.+|..++++++++..
T Consensus       140 ~~~g~-------------------~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          140 TALGN-------------------HDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHTC-------------------HHHHHHHHHHHHHHHT
T ss_pred             HHccC-------------------HHHHHHHHHHHHHHHH
Confidence            99999                   8999999999987643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.32  E-value=9.1e-12  Score=121.84  Aligned_cols=149  Identities=10%  Similarity=-0.006  Sum_probs=114.5

Q ss_pred             hhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 010864          113 AEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQE  170 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~  170 (498)
                      .+++++|...+.++....                +..+...+++++|+.+|++++.+.+..      ..+++++|.+|..
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            355666666666554422                112345679999999999999975443      3479999999999


Q ss_pred             hcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864          171 SADNVSLDSTSPSKDALLEEACKKYDEATRL-------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA  243 (498)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A  243 (498)
                      +|+              +++|+.+|++++++       .+....+++|+|.+|..    +|++++|++.+++|+....+.
T Consensus       168 ~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          168 NGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             TTC--------------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCC--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHc
Confidence            999              99999999999964       22245689999999999    999999997666665544321


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhc-CcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          244 VQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       244 l~l~P~~~~a~~~lg~~l~~~g-~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                       ...+..+.+++++|.+|..+| .+          ++|+.+|++|+.+
T Consensus       230 -~~~~~~~~~~~~lg~~~~~~g~~~----------~~A~~~~~~Al~i  266 (293)
T 3u3w_A          230 -NSMALIGQLYYQRGECLRKLEYEE----------AEIEDAYKKASFF  266 (293)
T ss_dssp             -TBCTTHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHHHHHhCCcH----------HHHHHHHHHHHHH
Confidence             222334899999999999999 57          9999999999986

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=2.6e-11  Score=101.63  Aligned_cols=105  Identities=13%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       204 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      ..+..++.+|.++..    .|++++|+       ..|++++..+|++..+++++|.++...|++          ++|+.+
T Consensus         2 ~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~   60 (131)
T 1elr_A            2 KQALKEKELGNDAYK----KKDFDTAL-------KHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCREL   60 (131)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHH
T ss_pred             hHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHhccH----------HHHHHH
Confidence            346789999999999    99999999       688999999999999999999999999999          999999


Q ss_pred             HHHHHHhcCCC-------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          284 FRAAIQLQFDF-------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       284 ~~~Al~l~P~~-------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      |++++.+.|++       ..+++++|.+|..+|+                   +..|..+|++++.+.|+..
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~  113 (131)
T 1elr_A           61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-------------------YKDAIHFYNKSLAEHRTPD  113 (131)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc-------------------HHHHHHHHHHHHHhCCCHH
Confidence            99999999887       9999999999999999                   9999999999999999643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=1.9e-11  Score=106.09  Aligned_cols=131  Identities=12%  Similarity=-0.006  Sum_probs=110.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--
Q 010864          134 RSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--  205 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--  205 (498)
                      +...|++++|+.+|++++++.+..      ..++.++|.++..+|+              +++|+..|++++.+.+..  
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------------FETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhCC
Confidence            677899999999999999886543      2589999999999999              999999999999986543  


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       206 ----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                          ..+++++|.++..    +|++++|++.+++++..+++. ...+....++.++|.++..+|++          ++|+
T Consensus        85 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~  149 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNH----------DQAM  149 (164)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------HHHH
T ss_pred             cHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCH----------HHHH
Confidence                6789999999999    999999998777777665432 11123467899999999999999          9999


Q ss_pred             HHHHHHHHhcCC
Q 010864          282 SKFRAAIQLQFD  293 (498)
Q Consensus       282 ~~~~~Al~l~P~  293 (498)
                      .+|++++++...
T Consensus       150 ~~~~~a~~~~~~  161 (164)
T 3ro3_A          150 HFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=6.6e-11  Score=98.45  Aligned_cols=100  Identities=11%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 010864          190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP  269 (498)
Q Consensus       190 ~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~  269 (498)
                      +|+..|+++++++|++..+++++|.++..    .|++++|+       ..|+++++++|++..+++++|.+|..+|++  
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~--   69 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAAL-------PHLRAALDFDPTYSVAWKWLGKTLQGQGDR--   69 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCH--
Confidence            58899999999999999999999999999    99999999       699999999999999999999999999999  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcch
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~Lg~~~~~~g~  310 (498)
                              ++|+.+|++++++.|+  +......+...+..+++
T Consensus        70 --------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           70 --------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence                    9999999999999874  56677777777777665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.25  E-value=1.8e-11  Score=118.86  Aligned_cols=134  Identities=12%  Similarity=0.013  Sum_probs=117.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--HHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYN  211 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--~~a~~~  211 (498)
                      +...|+|++|.+.|+.++..+|++. +++.+|.++++.++              +++|+..|++++...+..  ..++++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------------~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------------WTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------------HHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------------HHHHHHHHHHhhccCCcccHHHHHHH
Confidence            4558999999999999999999999 99999999999999              999999999887764222  458999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      +|.++..    +|++++|+       .+|++++.-.  |. ...+++++|.++.++|+.          ++|+..|++++
T Consensus       177 LG~al~~----LG~~~eAl-------~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~----------deA~~~l~~a~  235 (282)
T 4f3v_A          177 HGVAAAN----LALFTEAE-------RRLTEANDSPAGEACARAIAWYLAMARRSQGNE----------SAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHH-------HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence            9999999    99999999       6888887544  66 678999999999999999          99999999999


Q ss_pred             HhcCCCHHHHHHHHHH
Q 010864          289 QLQFDFHRAIYNLGTV  304 (498)
Q Consensus       289 ~l~P~~~~a~~~Lg~~  304 (498)
                      ..+|+ ..++..|...
T Consensus       236 a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          236 TTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHSCC-HHHHHHHHCT
T ss_pred             hcCCc-HHHHHHHhCC
Confidence            99999 8877776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.25  E-value=4.8e-11  Score=108.62  Aligned_cols=132  Identities=14%  Similarity=0.070  Sum_probs=108.7

Q ss_pred             hHHhhccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---CC
Q 010864          133 GRSRQRILTFAAKRYANAIE------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CP  203 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~p  203 (498)
                      .+...|++++|+.+|++++.      ..+....+++++|.+|..+|+              +++|+..|++++.+   .+
T Consensus        35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------------WDAARRCFLEERELLASLP  100 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHcC
Confidence            36678999999999999999      445567899999999999999              99999999999999   44


Q ss_pred             C----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHH
Q 010864          204 T----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT  279 (498)
Q Consensus       204 ~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~  279 (498)
                      +    ...+++++|.++..    +|++++|+..+++++...++.- .......++.++|.++..+|++          ++
T Consensus       101 ~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~----------~~  165 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNL----------LE  165 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCH----------HH
T ss_pred             ccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCH----------HH
Confidence            3    35679999999999    9999999987777766544211 0011245679999999999999          99


Q ss_pred             HHHHHHHHHHhcCC
Q 010864          280 AISKFRAAIQLQFD  293 (498)
Q Consensus       280 Ai~~~~~Al~l~P~  293 (498)
                      |+.+|++++++...
T Consensus       166 A~~~~~~al~~~~~  179 (203)
T 3gw4_A          166 AQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.24  E-value=6.8e-11  Score=98.35  Aligned_cols=101  Identities=13%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010864          142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK  221 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~  221 (498)
                      +|+..|+++++.+|+++.+++++|.+|...|+              +++|+..|+++++++|++..+|+++|.++..   
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---   65 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFDPTYSVAWKWLGKTLQG---   65 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---
Confidence            58899999999999999999999999999999              9999999999999999999999999999999   


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCc
Q 010864          222 MRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQELSAI  267 (498)
Q Consensus       222 ~~g~~~eA~~~~~~Al~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~  267 (498)
                       +|++++|+       ..|+++++++|  .+..+...+...+..+++.
T Consensus        66 -~g~~~~A~-------~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           66 -QGDRAGAR-------QAWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             -HTCHHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHH-------HHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence             99999999       57777777666  3556667777766666543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=9.7e-12  Score=101.94  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      ++.+|+++|.++...|+              +++|+..|+++++++|++..+++++|.++..    +|++++|+      
T Consensus         3 ~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~------   58 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGL--------------YREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAI------   58 (111)
T ss_dssp             HHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH------
Confidence            46789999999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCc
Q 010864          237 TKNYEKAVQLNWNS------PQALNNWGLALQELSAI  267 (498)
Q Consensus       237 l~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~  267 (498)
                       ..|+++++++|++      ..+++++|.++..+|++
T Consensus        59 -~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           59 -QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             -HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence             6999999999999      99999999999999998

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.22  E-value=1.5e-10  Score=120.72  Aligned_cols=158  Identities=16%  Similarity=0.064  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESA---DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       139 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..+.+..+++.+...+|.   +++++|.+|...|   +              +++|+..|+++.+.++..+..+++||.+
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~--------------~~~A~~~~~~aa~~g~~~a~~~~~Lg~~  222 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQ--------------QAELLKQMEAGVSRGTVTAQRVDSVARV  222 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHH--------------HHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCccc--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455566666666665555   9999999999988   6              9999999999999999999999999999


Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          216 ISDRAKMR----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ---ELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       216 ~~~~~~~~----g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~---~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      |..    .    +++++|+       .+|+++.   |+++.++++||.+|.   ..+++          ++|+.+|++++
T Consensus       223 y~~----g~~~~~d~~~A~-------~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~----------~~A~~~~~~Aa  278 (452)
T 3e4b_A          223 LGD----ATLGTPDEKTAQ-------ALLEKIA---PGYPASWVSLAQLLYDFPELGDV----------EQMMKYLDNGR  278 (452)
T ss_dssp             HTC----GGGSSCCHHHHH-------HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH----------HHHHHHHHHHH
T ss_pred             HhC----CCCCCCCHHHHH-------HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHH
Confidence            976    4    6888888       6888887   899999999999944   45565          99999999998


Q ss_pred             HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +.  +++.++++||.+|. .|.     +..         ..+.+|..+|.++.   +++......+..+
T Consensus       279 ~~--g~~~A~~~Lg~~y~-~G~-----g~~---------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          279 AA--DQPRAELLLGKLYY-EGK-----WVP---------ADAKAAEAHFEKAV---GREVAADYYLGQI  327 (452)
T ss_dssp             HT--TCHHHHHHHHHHHH-HCS-----SSC---------CCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred             HC--CCHHHHHHHHHHHH-cCC-----CCC---------CCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            54  58999999999998 552     000         01789999999988   6666555555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.22  E-value=9.5e-10  Score=125.11  Aligned_cols=212  Identities=14%  Similarity=0.032  Sum_probs=152.5

Q ss_pred             hhhcHHHHHHHHHHhhhcch--hhHH-hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhH
Q 010864          112 LAEQNNAAMELINSVTGVDE--EGRS-RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALL  188 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~--~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~  188 (498)
                      ..+.+++|..+|.++.....  ..+. ..+++++|+++++++     +.+.+|+++|.++...|+              +
T Consensus      1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~--------------~ 1121 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM--------------V 1121 (1630)
T ss_pred             hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC--------------H
Confidence            45778888888888764432  1122 456777777776654     779999999999999999              9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------HHHHHhc
Q 010864          189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN----------------------YEKAVQL  246 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~----------------------~~~Al~l  246 (498)
                      ++|+.+|.+|     +++..|.++|.++.+    .|++++|++.|..|++.                      ++..+  
T Consensus      1122 kEAIdsYiKA-----dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1122 KEAIDSYIKA-----DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHhc-----CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            9999999887     899999999999999    99999999888665521                      11111  


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcchH----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          247 NWNSPQALNNWGLALQELSAIVPA----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       247 ~P~~~~a~~~lg~~l~~~g~~~~a----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +..+...+.++|..+...|+|++|                +.+.|++++|++++++|     ++..+|.+.+.++...|+
T Consensus      1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A         1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred             hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhH
Confidence            233456677899999999999887                44678899999999988     556788877777766655


Q ss_pred             hHHhccCCC----CCCC-------CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864          311 DTLRTGGTV----NPRE-------VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR  358 (498)
Q Consensus       311 ~~~~~~~~~----~~~~-------~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~  358 (498)
                      ...+...-+    .+..       ......+++|+.++++++.+++.+..+..-+..+.
T Consensus      1266 f~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1266 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence            322221111    1100       11112478999999999999998886554444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=1.5e-10  Score=91.26  Aligned_cols=85  Identities=32%  Similarity=0.411  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ  235 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~  235 (498)
                      .++.+++.+|.++...|+              +++|+..|+++++++|++..+++++|.++..    .|++++|+     
T Consensus         7 ~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-----   63 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI-----   63 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred             ccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHH-----
Confidence            467899999999999999              9999999999999999999999999999999    99999999     


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          236 ATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                        ..|+++++++|++..++.++|.++..+|
T Consensus        64 --~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           64 --EYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence              6999999999999999999999998765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.19  E-value=1.3e-10  Score=91.49  Aligned_cols=85  Identities=28%  Similarity=0.325  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864          204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       204 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .+..+++++|.++..    .|++++|+       ..|+++++++|++..+++++|.++...|++          ++|+.+
T Consensus         7 ~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~   65 (91)
T 1na3_A            7 NSAEAWYNLGNAYYK----QGDYDEAI-------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEY   65 (91)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHH
T ss_pred             ccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHH
Confidence            357899999999999    99999999       689999999999999999999999999999          999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          284 FRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       284 ~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      |+++++++|++..++.++|.++..+|
T Consensus        66 ~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           66 YQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=8.5e-11  Score=123.67  Aligned_cols=130  Identities=12%  Similarity=-0.046  Sum_probs=114.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864          134 RSRQRILTFAAKRYANAIERN-----PED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  201 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  201 (498)
                      +..+|+|++|+..|+++|++.     |++   ...+++||.+|..+|+              |++|+..|+++|++    
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~  384 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--------------YEEASHYARRMVDGYMKL  384 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHH
Confidence            456899999999999999863     444   5679999999999999              99999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864          202 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       202 ----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                          +|+.+..++|||.+|..    +|++++|+.+|++|++.+++.+.-+ |.......+++.++.+++.+         
T Consensus       385 lG~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~---------  451 (490)
T 3n71_A          385 YHHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF---------  451 (490)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             cCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH---------
Confidence                45556789999999999    9999999999999999999988544 66677889999999999999         


Q ss_pred             HHHHHHHHHHHHHhc
Q 010864          277 VRTAISKFRAAIQLQ  291 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l~  291 (498)
                       ++|...|+++.+..
T Consensus       452 -~~ae~~~~~~~~~~  465 (490)
T 3n71_A          452 -RQNEFMYHKMREAA  465 (490)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHH
Confidence             99999999987643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.16  E-value=1.9e-09  Score=107.81  Aligned_cols=165  Identities=14%  Similarity=0.006  Sum_probs=130.1

Q ss_pred             HHHHHhCCCCHHHH--HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC
Q 010864          148 ANAIERNPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR  225 (498)
Q Consensus       148 ~~al~~~P~~~~a~--~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~  225 (498)
                      +++...-|.+.++|  +..|..+...+.           ...+.+|+.+|++|++++|+++.+|-.++.+|..++...+.
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~-----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~  252 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGD-----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL  252 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCC
Confidence            34556678877665  566777766544           23489999999999999999999999999999754333323


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       226 ~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                      .......+.+++.. ..++..+|.++.++.-++.++...|++          ++|+..+++|++++|+ ..++..+|.++
T Consensus       253 ~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~----------d~A~~~l~rAl~Ln~s-~~a~~llG~~~  320 (372)
T 3ly7_A          253 DEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKT----------DESYQAINTGIDLEMS-WLNYVLLGKVY  320 (372)
T ss_dssp             CHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            23333334444442 235578899999999999999999999          9999999999999975 77889999999


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL  354 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l  354 (498)
                      ...|+                   +.+|.+.|.+|+.++|....|...-
T Consensus       321 ~~~G~-------------------~~eA~e~~~~AlrL~P~~~t~~~~~  350 (372)
T 3ly7_A          321 EMKGM-------------------NREAADAYLTAFNLRPGANTLYWIE  350 (372)
T ss_dssp             HHTTC-------------------HHHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred             HHCCC-------------------HHHHHHHHHHHHhcCCCcChHHHHh
Confidence            99999                   9999999999999999998655443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.15  E-value=1.7e-10  Score=121.31  Aligned_cols=132  Identities=12%  Similarity=-0.049  Sum_probs=112.0

Q ss_pred             HHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864          163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK  234 (498)
Q Consensus       163 ~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~  234 (498)
                      ..+..+..+|+              |++|+..|+++|++        +|+.+..++|||.+|..    +|+|++|+.+++
T Consensus       314 e~a~~~~~qg~--------------~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~  375 (490)
T 3n71_A          314 EKIDKARSEGL--------------YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHTTTC--------------HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred             HHHHHHHhCCC--------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHH
Confidence            34455677888              99999999999997        34456789999999999    999999999999


Q ss_pred             HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHH
Q 010864          235 QATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDF---HRAIYNLGTVL  305 (498)
Q Consensus       235 ~Al~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-----~P~~---~~a~~~Lg~~~  305 (498)
                      +++..+++.+.- +|+-+..++|||.+|..+|++          ++|+.+|++|+++     .|++   .....+|+.++
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  445 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE  445 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999998844 377788999999999999999          9999999999987     3555   56678899999


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      ..++.                   |.+|...|.++.
T Consensus       446 ~e~~~-------------------~~~ae~~~~~~~  462 (490)
T 3n71_A          446 MELRM-------------------FRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHH-------------------HHHHHHHHHHHH
T ss_pred             HHHHH-------------------HHHHHHHHHHHH
Confidence            99988                   777777777764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.14  E-value=1.3e-09  Score=107.03  Aligned_cols=164  Identities=12%  Similarity=-0.024  Sum_probs=135.2

Q ss_pred             HHhhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHH
Q 010864          134 RSRQRILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHD  207 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~  207 (498)
                      +...|++++|+..+.+.+..+|  ++.+++..++.+|..+|+              ++.|.+.++++.+.+|+    +-.
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------------~d~A~k~l~~~~~~~~d~~~~~d~  175 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------------VSTASTIFDNYTNAIEDTVSGDNE  175 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCccccccchH
Confidence            5568999999999999999997  899999999999999999              99999999999999994    335


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      ...+|+.++..++...+++.+|.       ..|+++.+..|+  ....+.+   ++..+|++          ++|...++
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~-------~~f~El~~~~p~~~~~~lLln---~~~~~g~~----------~eAe~~L~  235 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNF-------YYYEELSQTFPTWKTQLGLLN---LHLQQRNI----------AEAQGIVE  235 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHH-------HHHHHHHTTSCSHHHHHHHHH---HHHHHTCH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHH-------HHHHHHHHhCCCcccHHHHHH---HHHHcCCH----------HHHHHHHH
Confidence            55666655443222233888888       689998888887  3445555   89999999          99999999


Q ss_pred             HHHHh----------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          286 AAIQL----------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       286 ~Al~l----------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                      +++++          +|+++.++.|+..+...+|+                     .+..++.++.++.|+++....
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---------------------~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---------------------DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---------------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---------------------HHHHHHHHHHHhCCCChHHHH
Confidence            88887          58999999999999999985                     457889999999999994433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.6e-10  Score=93.22  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      ++.+++++|.++..    .|++++|+       ..|+++++++|+++.+++++|.++..+|++          ++|+.+|
T Consensus         3 ~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~   61 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK----QGLYREAV-------HCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHH
Confidence            46789999999999    99999999       699999999999999999999999999999          9999999


Q ss_pred             HHHHHhcCCC------HHHHHHHHHHHHHcch
Q 010864          285 RAAIQLQFDF------HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       285 ~~Al~l~P~~------~~a~~~Lg~~~~~~g~  310 (498)
                      +++++++|++      ..+++++|.++..+|+
T Consensus        62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999      9999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.08  E-value=8.8e-09  Score=117.31  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=134.8

Q ss_pred             hhhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          112 LAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      ..+.+++|.+++.++-...     +..+...|++++|+.+|.++     ++++.|.++|.++.+.|+             
T Consensus      1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk------------- 1149 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN------------- 1149 (1630)
T ss_pred             HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC-------------
Confidence            3455666666665543322     44566789999999999886     899999999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----
Q 010864          187 LLEEACKKYDEATRLCPT---------------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ----  235 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~---------------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~----  235 (498)
                       |++|+++|..|.+..++                           +...+.++|..+..    .|+|++|...|.+    
T Consensus      1150 -yEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~ny 1224 (1630)
T 1xi4_A         1150 -WEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVSNF 1224 (1630)
T ss_pred             -HHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhHH
Confidence             99999999887765433                           23456778888888    9999999988744    


Q ss_pred             ---------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH--------------------HhhhhhHHHH
Q 010864          236 ---------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--------------------REKQTIVRTA  280 (498)
Q Consensus       236 ---------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a--------------------~~~~~~~~~A  280 (498)
                                     |+..+++|     ++..+|.+.+.++...|+|..|                    ++..|.+++|
T Consensus      1225 ~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A         1225 GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH
Confidence                           55566655     5778888888888777777665                    5678999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      +.+|++++.+++.+...+..||.+|.+-.
T Consensus      1300 I~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1300 ITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            99999999999999999999999998765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=1.1e-09  Score=112.12  Aligned_cols=164  Identities=5%  Similarity=-0.038  Sum_probs=137.0

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~-----------------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      +...|+|++|++.|.+++..+|...                 .++.++|.+|..+|+              +++|++.|.
T Consensus        14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------------~~~a~~~~~   79 (434)
T 4b4t_Q           14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------------KDKLREFIP   79 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------------HHHHHHHHH
Confidence            3557999999999999999988653                 468999999999999              999999999


Q ss_pred             HHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864          197 EATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA  270 (498)
Q Consensus       197 ~Al~l~p~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a  270 (498)
                      +++.+.+...      .+..++|.++..    .|++++|++.+++++....+ ....+....++.+||.+|...|+|   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~---  151 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKKQY---  151 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHTCH---
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHccCh---
Confidence            9999866532      356778888888    99999999877777766553 233455678999999999999999   


Q ss_pred             HhhhhhHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          271 REKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       271 ~~~~~~~~~Ai~~~~~Al~l------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                             ++|+..+++++..      .+....++.++|.+|..+|+                   +.+|..+|.+++.+.
T Consensus       152 -------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          152 -------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-------------------LAKSKASLTAARTAA  205 (434)
T ss_dssp             -------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHHHHh
Confidence                   9999999999986      34446899999999999999                   889999999888764


Q ss_pred             C
Q 010864          345 P  345 (498)
Q Consensus       345 p  345 (498)
                      +
T Consensus       206 ~  206 (434)
T 4b4t_Q          206 N  206 (434)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.07  E-value=6.9e-10  Score=90.30  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=74.8

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864          153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL  232 (498)
Q Consensus       153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~  232 (498)
                      .+|+++.+++++|.+|..+|+              +++|+..|+++++++|++..+|+++|.+|..    +|++++|+  
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~--   61 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAI--   61 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH--
T ss_pred             CCccCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH--
Confidence            479999999999999999999              9999999999999999999999999999999    99999999  


Q ss_pred             HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCc
Q 010864          233 WKQATKNYEKAVQLNW--NSPQALNNWGLALQELSAI  267 (498)
Q Consensus       233 ~~~Al~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~  267 (498)
                           ..|++++++.|  .+......+..++...+..
T Consensus        62 -----~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           62 -----DTYAQGIEVAREEGTQKDLSELQDAKLKAEGL   93 (100)
T ss_dssp             -----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence                 46666666654  3556666666666666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=5.5e-10  Score=89.91  Aligned_cols=92  Identities=23%  Similarity=0.292  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864          161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKN  239 (498)
Q Consensus       161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~-a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~  239 (498)
                      .+++|.++...|+              +++|+..|+++++++|++.. +++++|.++..    +|++++|+       ..
T Consensus         3 ~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~-------~~   57 (99)
T 2kc7_A            3 QLKTIKELINQGD--------------IENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKAL-------NN   57 (99)
T ss_dssp             THHHHHHHHHHTC--------------HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred             HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence            3678999999999              99999999999999999999 99999999999    99999999       69


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864          240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH  295 (498)
Q Consensus       240 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~  295 (498)
                      |+++++++|++..++++        +.+          .+++..|++++..+|++.
T Consensus        58 ~~~al~~~p~~~~~~~~--------~~~----------~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           58 YQSAIELNPDSPALQAR--------KMV----------MDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHCTTSTHHHHH--------HHH----------HHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHhcCCCcHHHHHH--------HHH----------HHHHHHHHHHhccCcccc
Confidence            99999999999998865        445          889999999998888753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.03  E-value=1.5e-09  Score=88.35  Aligned_cols=89  Identities=13%  Similarity=0.100  Sum_probs=76.7

Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864          201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA  280 (498)
Q Consensus       201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A  280 (498)
                      .+|+++.+++++|.+|..    +|++++|+       ..|+++++++|+++.+|+++|.+|..+|++          ++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK----HDNASRAL-------ALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHH
T ss_pred             CCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHH
Confidence            479999999999999999    99999999       699999999999999999999999999999          999


Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHcch
Q 010864          281 ISKFRAAIQLQFD--FHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       281 i~~~~~Al~l~P~--~~~a~~~Lg~~~~~~g~  310 (498)
                      +..|++++++.|+  +......+..++...+.
T Consensus        61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhcCCchhHHHHHHHHHHHccc
Confidence            9999999999764  45666666666665553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=6.2e-09  Score=90.17  Aligned_cols=126  Identities=18%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+++++|+..|+++.+...  +.+.  +|.+|...+.              +++|+.+|++|.+.  +++.++++||.+|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~--------------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y   67 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCC--------------HHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            5789999999999999874  4444  9999988887              99999999999987  7899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      ..-....+++++|+       .+|+++.+.  .++.++++||.+|..    .+++          ++|+.+|++|.+.  
T Consensus        68 ~~G~g~~~d~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~----------~~A~~~~~~Aa~~--  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE----------KQAVKTFEKACRL--  126 (138)
T ss_dssp             HHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--
T ss_pred             HcCCCCCccHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH----------HHHHHHHHHHHHC--
Confidence            75111135777777       688888776  789999999999998    7777          9999999999987  


Q ss_pred             CCHHHHHHHHH
Q 010864          293 DFHRAIYNLGT  303 (498)
Q Consensus       293 ~~~~a~~~Lg~  303 (498)
                      .++.+.++|+.
T Consensus       127 g~~~A~~~l~~  137 (138)
T 1klx_A          127 GSEDACGILNN  137 (138)
T ss_dssp             TCHHHHHHC--
T ss_pred             CCHHHHHHHhh
Confidence            56777777764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.00  E-value=6.7e-09  Score=103.92  Aligned_cols=152  Identities=15%  Similarity=0.048  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864          117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD  196 (498)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  196 (498)
                      ..|++++-++......  .....+.+|+.+|++|++++|+++.+|..++.+|.......   +........+.+|+.. .
T Consensus       194 ~~Aydl~Lra~~~l~~--~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~---~~~~~~~~~l~~a~~a-~  267 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLH--GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH---PLDEKQLAALNTEIDN-I  267 (372)
T ss_dssp             GGGHHHHHHHHHHHHH--CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC---CCchhhHHHHHHHHHH-H
Confidence            3566666555443111  12466799999999999999999999999999997543210   0111111122333331 1


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864          197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI  276 (498)
Q Consensus       197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~  276 (498)
                      .++.++|.++.+|..++.++..    .|++++|+       ..+++|+.++| +..+|..+|.++...|++         
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~----~gd~d~A~-------~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~---------  326 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALV----KGKTDESY-------QAINTGIDLEM-SWLNYVLLGKVYEMKGMN---------  326 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCC-CHHHHHHHHHHHHHTTCH---------
T ss_pred             HhcccCCcCHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhcCC-CHHHHHHHHHHHHHCCCH---------
Confidence            3446689999999999999988    99999999       69999999997 478889999999999999         


Q ss_pred             HHHHHHHHHHHHHhcCCCHH
Q 010864          277 VRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       277 ~~~Ai~~~~~Al~l~P~~~~  296 (498)
                       ++|++.|++|++++|....
T Consensus       327 -~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          327 -REAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             -HHHHHHHHHHHHHSCSHHH
T ss_pred             -HHHHHHHHHHHhcCCCcCh
Confidence             9999999999999998653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.96  E-value=6.9e-09  Score=106.10  Aligned_cols=162  Identities=9%  Similarity=-0.053  Sum_probs=128.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-----
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----  202 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-----  202 (498)
                      +..+|++++|+.+|.+++.+.+...      .+...+|.++...|+              +++|+..|++++.+.     
T Consensus        65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS--------------LDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC--------------HHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHHHhCc
Confidence            6779999999999999998776543      345678888888888              999999999999873     


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          203 -PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       203 -p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                       +..+.++.+||.+|..    .|++.+|+..+++++..+.+. .-.+....++.++|.+|..+|++          ++|.
T Consensus       131 ~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~A~  195 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKL-DDKPSLVDVHLLESKVYHKLRNL----------AKSK  195 (434)
T ss_dssp             CSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             cHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHhCcH----------HHHH
Confidence             3347899999999999    999999997666655443321 12345678999999999999999          9999


Q ss_pred             HHHHHHHHhcCCC-------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864          282 SKFRAAIQLQFDF-------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL  343 (498)
Q Consensus       282 ~~~~~Al~l~P~~-------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  343 (498)
                      .+|++++.+.+..       ...+.++|.++...++                   |..|..+|.+++..
T Consensus       196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-------------------YKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHH
Confidence            9999999885432       3456667777777776                   88888888888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=1.4e-09  Score=87.39  Aligned_cols=91  Identities=14%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~-a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      .+++|.++..    .|++++|+       ..|+++++.+|++.. +++++|.+|..+|++          ++|+.+|+++
T Consensus         3 ~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~a   61 (99)
T 2kc7_A            3 QLKTIKELIN----QGDIENAL-------QALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSA   61 (99)
T ss_dssp             THHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            3678888988    99999999       699999999999999 999999999999999          9999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       288 l~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      ++++|++..++++        +.                   +.++..+|+++...+|++
T Consensus        62 l~~~p~~~~~~~~--------~~-------------------~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           62 IELNPDSPALQAR--------KM-------------------VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHCTTSTHHHHH--------HH-------------------HHHHHHHHCCTTHHHHCC
T ss_pred             HhcCCCcHHHHHH--------HH-------------------HHHHHHHHHHHhccCccc
Confidence            9999999998854        22                   566667777766666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.93  E-value=2.3e-08  Score=86.45  Aligned_cols=115  Identities=18%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                      -.+++++|+..|+++.+.....+  .  ||.+|..    .+.+++|+       .+|+++.+.  +++.++++||.+|..
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~----g~~~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~   69 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFG--C--LSLVSNS----QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYEN   69 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCT----TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHc----CCCHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHc
Confidence            34579999999999999874444  3  9999988    88888877       688888776  789999999999998


Q ss_pred             ----hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cchhHHhccCCCCCCCCChhHHHHHHHH
Q 010864          264 ----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAEDTLRTGGTVNPREVSPNELYSQSAI  335 (498)
Q Consensus       264 ----~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~A~~  335 (498)
                          .+++          ++|+.+|++|.+.  .++.++++||.+|..    .++                   +.+|..
T Consensus        70 G~g~~~d~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-------------------~~~A~~  118 (138)
T 1klx_A           70 GKYVKKDL----------RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-------------------EKQAVK  118 (138)
T ss_dssp             CSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-------------------HHHHHH
T ss_pred             CCCCCccH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-------------------HHHHHH
Confidence                6777          9999999999987  789999999999988    555                   899999


Q ss_pred             HHHHHHhcCCC
Q 010864          336 YIAAAHALKPS  346 (498)
Q Consensus       336 ~~~~Al~l~p~  346 (498)
                      +|++|.+....
T Consensus       119 ~~~~Aa~~g~~  129 (138)
T 1klx_A          119 TFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHCCCH
Confidence            99999998544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.92  E-value=2.9e-08  Score=95.62  Aligned_cols=177  Identities=12%  Similarity=0.020  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-cCCC------CCCCCchhhhHHHHHHHHHHHHHh-------------
Q 010864          142 FAAKRYANAIERNPEDYDALYNWALVLQESAD-NVSL------DSTSPSKDALLEEACKKYDEATRL-------------  201 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~~------~~~~~~~~~~~~~A~~~~~~Al~l-------------  201 (498)
                      ..+..++-.+..+|++...+...|..|..-+. ++..      ......+...+.+|.+.|.++...             
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~  129 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT  129 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            35677888888899998776666666644432 1110      000011122344555555554432             


Q ss_pred             ------------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 010864          202 ------------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLAL  261 (498)
Q Consensus       202 ------------------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l  261 (498)
                                        +|+++++++..|.++...+...+.--.|+....+|...+++|+++||+  +..+|..||.+|
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence                              566688888888888763222112224667777888999999999999  677999999999


Q ss_pred             HHh-----cCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-chhHHhccCCCCCCCCChhHHHHHHH
Q 010864          262 QEL-----SAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQSA  334 (498)
Q Consensus       262 ~~~-----g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~A~  334 (498)
                      ...     |+.          ++|..+|++|++++|+. ..+++.+|..+... |+                   +..+.
T Consensus       210 ~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-------------------~~~a~  260 (301)
T 3u64_A          210 AAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-------------------RAGFD  260 (301)
T ss_dssp             HHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-------------------HHHHH
T ss_pred             HhCCCccCCCH----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-------------------HHHHH
Confidence            995     888          99999999999999975 99999999999885 87                   88999


Q ss_pred             HHHHHHHhcCCCH
Q 010864          335 IYIAAAHALKPSY  347 (498)
Q Consensus       335 ~~~~~Al~l~p~~  347 (498)
                      .++++++..+|..
T Consensus       261 ~~L~kAL~a~p~~  273 (301)
T 3u64_A          261 EALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCGGG
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999998874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.86  E-value=4.2e-08  Score=96.39  Aligned_cols=159  Identities=7%  Similarity=-0.041  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 010864          143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHDAFYNWAIAISDRA  220 (498)
Q Consensus       143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p--~~~~a~~~lg~~~~~~~  220 (498)
                      |+..|++.++..+....++..+|.++...|+              +++|++.+.+.+..+|  ++.+++..++.++..  
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~--------------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--  148 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGD--------------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--  148 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--
Confidence            7888998888777778888999999999999              9999999999999997  889999999999999  


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHH--HHHHHhc--CcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          221 KMRGRTKEAEELWKQATKNYEKAVQLNWN----SPQALNNWG--LALQELS--AIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~----~~~a~~~lg--~~l~~~g--~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                        +|+.+.|.       +.+++..+.+|+    +-.++.+|+  ++....|  ++          ++|...|+++.+..|
T Consensus       149 --~~r~d~A~-------k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~----------q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          149 --NNNVSTAS-------TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA----------TSNFYYYEELSQTFP  209 (310)
T ss_dssp             --TTCHHHHH-------HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT----------THHHHHHHHHHTTSC
T ss_pred             --CCCHHHHH-------HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhCC
Confidence              99999999       688888888884    344455554  4466667  88          999999999988888


Q ss_pred             C--CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHH
Q 010864          293 D--FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL----------KPSYSVYSSALRLVR  358 (498)
Q Consensus       293 ~--~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----------~p~~~~~~~~l~~~~  358 (498)
                      +  ....++|   ++..+|+                   +.+|...+++++++          +|+++....++-.+.
T Consensus       210 ~~~~~~lLln---~~~~~g~-------------------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~  265 (310)
T 3mv2_B          210 TWKTQLGLLN---LHLQQRN-------------------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA  265 (310)
T ss_dssp             SHHHHHHHHH---HHHHHTC-------------------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred             CcccHHHHHH---HHHHcCC-------------------HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH
Confidence            7  3445555   8999999                   99999999988887          588887665544343

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.84  E-value=3.4e-08  Score=95.17  Aligned_cols=155  Identities=12%  Similarity=0.036  Sum_probs=118.8

Q ss_pred             cHHHHHHHHHHhhhcchhhHHhh-ccHHHHHH-----HHHHHH-HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          115 QNNAAMELINSVTGVDEEGRSRQ-RILTFAAK-----RYANAI-ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~-g~~~~A~~-----~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      ....|..++.+.......++... ..+.+++.     -+.+++ ..+|+++++++..|.+....-.   .........+.
T Consensus       102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~---~~~gg~~Al~~  178 (301)
T 3u64_A          102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFA---LTPLGSALPDT  178 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHT---TSCTTSCCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHh---cCCCChHHHHh
Confidence            34566666666665543333221 33333332     233333 4578999999999999876432   22334567778


Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 010864          188 LEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGL  259 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~--~~~a~~~lg~~~~~~~~~~-----g~~~eA~~~~~~Al~~~~~Al~l~P~~-~~a~~~lg~  259 (498)
                      ..+|...+++|++++|+  +..+|..||.+|..    .     |+.++|.       .+|++|++++|+. ..+++.+|.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~----vPp~~gGd~ekA~-------~~ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA----APESFGGGMEKAH-------TAFEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH----SCTTTTCCHHHHH-------HHHHHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh----CCCccCCCHHHHH-------HHHHHHHHhCCCCCchHHHHHHH
Confidence            99999999999999999  66799999999987    7     9999999       7999999999975 999999999


Q ss_pred             HHHHh-cCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          260 ALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       260 ~l~~~-g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      .|... |++          ++|..++++|++.+|.
T Consensus       248 ~l~~~~gd~----------~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          248 ALCIPLNNR----------AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HTTTTTTCH----------HHHHHHHHHHHHCCGG
T ss_pred             HHHHhcCCH----------HHHHHHHHHHHcCCCC
Confidence            99884 999          9999999999999877

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.82  E-value=1.2e-08  Score=105.70  Aligned_cols=108  Identities=11%  Similarity=-0.047  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHH
Q 010864          188 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSPQALNNWG  258 (498)
Q Consensus       188 ~~~A~~~~~~Al~l-----~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-l~P~~~~a~~~lg  258 (498)
                      |++|+..|++++++     .|++   ...+.|||.+|..    +|+|++|+.++++++..|++.+. .+|+-+..++|||
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            99999999999986     3444   5689999999999    99999999999999999999884 4467778899999


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcc
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFH---RAIYNLGTVLYGLA  309 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-----~P~~~---~a~~~Lg~~~~~~g  309 (498)
                      .+|..+|++          ++|+.+|++|+++     -|+++   .++.+|+.+...+.
T Consensus       379 ~~~~~~g~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          379 KLQLHQGMF----------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            999999999          9999999999987     45554   55677777765543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.78  E-value=1.9e-08  Score=104.16  Aligned_cols=114  Identities=10%  Similarity=-0.144  Sum_probs=97.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864          134 RSRQRILTFAAKRYANAIERN-----PED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----  201 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----  201 (498)
                      +..+|+|++|+..|++++++.     |++   ...+.++|.+|..+|+              |++|+..|+++|.+    
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------------~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------------LEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhHHHH
Confidence            456899999999999999763     444   5679999999999999              99999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Q 010864          202 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELS  265 (498)
Q Consensus       202 ----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g  265 (498)
                          +|+.+..++|||.+|..    +|++++|+.+|++|++.+++.+..+ |....++++|+.+..+++
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence                45556789999999999    9999999999999999999987544 556677888998887664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.77  E-value=1e-08  Score=106.11  Aligned_cols=97  Identities=12%  Similarity=0.016  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Q 010864          188 LEEACKKYDEATRL-----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWG  258 (498)
Q Consensus       188 ~~~A~~~~~~Al~l-----~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l-~P~~~~a~~~lg  258 (498)
                      |++|+..|+++|++     .|+   .+..++|||.+|..    +|+|++|+.++++++..+++.+.- +|+-+..++|||
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            99999999999997     444   45689999999999    999999999999999999998854 477788899999


Q ss_pred             HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-----cCCCHHHH
Q 010864          259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHRAI  298 (498)
Q Consensus       259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-----~P~~~~a~  298 (498)
                      .+|..+|++          ++|+.+|++|+++     .|+++.+.
T Consensus       390 ~~~~~qg~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENK----------AAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCH----------HHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999          9999999999987     46666543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.77  E-value=1.1e-08  Score=105.01  Aligned_cols=192  Identities=13%  Similarity=0.043  Sum_probs=64.9

Q ss_pred             hhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864          113 AEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL  187 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~  187 (498)
                      .+++.+|++.|.+.....     .......|++++|+.+++.+++..++ +.+...++.+|.++|+              
T Consensus        45 ~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~--------------  109 (449)
T 1b89_A           45 KGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNR--------------  109 (449)
T ss_dssp             -----------------------------------------------------------------C--------------
T ss_pred             cCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCC--------------
Confidence            345555555554432211     11233456677777766666654322 5556666666666666              


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +.++.+.|+     .|+ ..+|.++|..+.+    .|++++|..       +|.++        ..|..+|.++.++|++
T Consensus       110 l~e~e~f~~-----~pn-~~a~~~IGd~~~~----~g~yeeA~~-------~Y~~a--------~n~~~LA~~L~~Lg~y  164 (449)
T 1b89_A          110 LAELEEFIN-----GPN-NAHIQQVGDRCYD----EKMYDAAKL-------LYNNV--------SNFGRLASTLVHLGEY  164 (449)
T ss_dssp             HHHHTTTTT-----CC---------------------CTTTHHH-------HHHHT--------TCHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHc-----CCc-HHHHHHHHHHHHH----cCCHHHHHH-------HHHHh--------hhHHHHHHHHHHhccH
Confidence            555555443     132 2356666666666    666666653       33322        3455555555555555


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChh------------HHHHHHHH
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN------------ELYSQSAI  335 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~A~~  335 (498)
                                ++|++.|++|     +++.+|..++.++...|+-..+....+. ....+.            +.+.+++.
T Consensus       165 ----------q~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          165 ----------QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             ----------HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------HHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence                      6666666666     3566666666666666543222111110 101111            12789999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864          336 YIAAAHALKPSYSVYSSALRLVRSM  360 (498)
Q Consensus       336 ~~~~Al~l~p~~~~~~~~l~~~~~~  360 (498)
                      ++++++.+++.+......+.++..-
T Consensus       229 lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          229 MLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            9999999999987665555555433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.76  E-value=9.6e-09  Score=105.39  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=96.3

Q ss_pred             hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      ..+++++|+.++.......         ..++.+.|+++++..+++.     |+ ..+|.++|..+...|.         
T Consensus        73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~---------  137 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKM---------  137 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTC-----C-----------------C---------
T ss_pred             hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCC---------
Confidence            3567777777666555331         2256778999998888753     43 4599999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           |++|+.+|.++        ..|.+||.++..    +|++++|+       ..|+++     +++.+|..++.++.
T Consensus       138 -----yeeA~~~Y~~a--------~n~~~LA~~L~~----Lg~yq~AV-------ea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          138 -----YDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAV-------DGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             -----TTTHHHHHHHT--------TCHHHHHHHHHT----TTCHHHHH-------HHHHHH-----TCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHh--------hhHHHHHHHHHH----hccHHHHH-------HHHHHc-----CCchhHHHHHHHHH
Confidence                 99999999977        578899999999    99999999       567766     47888999889999


Q ss_pred             HhcCcchH--------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          263 ELSAIVPA--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       263 ~~g~~~~a--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      ..|+++.|                    +++.|++++|+.++++++.+++.+..++..||.+|.+-.
T Consensus       189 ~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          189 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            88877766                    567889999999999999999999999999999998776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.72  E-value=2.2e-08  Score=103.57  Aligned_cols=97  Identities=13%  Similarity=0.027  Sum_probs=83.6

Q ss_pred             hhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh------
Q 010864          136 RQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------  201 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l------  201 (498)
                      ..|+|++|+..|+++|++     .|++   ...+.++|.+|..+|+              |++|+..|+++|++      
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~lG  375 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------------WEGALKYGQKIIKPYSKHYP  375 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHSC
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHHcC
Confidence            368999999999999986     3555   5678999999999999              99999999999987      


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864          202 --CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  252 (498)
Q Consensus       202 --~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~  252 (498)
                        +|+-+..++|||.+|..    +|++++|+.+|++|++.+++.+.  |+++.
T Consensus       376 ~~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~i~~~~lG--~~Hp~  422 (433)
T 3qww_A          376 VYSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIAIMEVAHG--KDHPY  422 (433)
T ss_dssp             SSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTC--TTCHH
T ss_pred             CCChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcC--CCChH
Confidence              55556789999999999    99999999999999999998764  44443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.63  E-value=1.1e-06  Score=95.94  Aligned_cols=170  Identities=10%  Similarity=-0.028  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC-KKYDEATRLCPTLHDAFYNWAIAISD  218 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~-~~~~~Al~l~p~~~~a~~~lg~~~~~  218 (498)
                      .+.....|+++|...|.+++.|+..+..+...|+              .++|. ..|++|+..+|.+...|..++.....
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~--------------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~  390 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT--------------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL  390 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC--------------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999998              88997 99999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHh----cCCC-----------CHHHHHHHHHHHHHhcCcchH-------------
Q 010864          219 RAKMRGRTKEAEELWKQATKNYEKAVQ----LNWN-----------SPQALNNWGLALQELSAIVPA-------------  270 (498)
Q Consensus       219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~----l~P~-----------~~~a~~~lg~~l~~~g~~~~a-------------  270 (498)
                          .|+++.|.+.|++++..+.+.++    -.|.           ...+|..++.+..+.|..+.|             
T Consensus       391 ----~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~  466 (679)
T 4e6h_A          391 ----NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL  466 (679)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred             ----hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence                99999999888888776543332    1243           355788888877777777544             


Q ss_pred             -----------Hh-h-hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHH
Q 010864          271 -----------RE-K-QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  337 (498)
Q Consensus       271 -----------~~-~-~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~  337 (498)
                                 .+ . .++.+.|...|+++++..|+++..|...+......|+                   ...|...|
T Consensus       467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-------------------~~~AR~lf  527 (679)
T 4e6h_A          467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-------------------ESQVKSLF  527 (679)
T ss_dssp             SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------------------HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-------------------HHHHHHHH
Confidence                       00 1 2346788888888888888888877777777777776                   67888888


Q ss_pred             HHHHhcCCC
Q 010864          338 AAAHALKPS  346 (498)
Q Consensus       338 ~~Al~l~p~  346 (498)
                      ++++...|+
T Consensus       528 eral~~~~~  536 (679)
T 4e6h_A          528 ESSIDKISD  536 (679)
T ss_dssp             HHHTTTSSS
T ss_pred             HHHHHhcCC
Confidence            998888874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=3.3e-07  Score=80.07  Aligned_cols=105  Identities=13%  Similarity=0.020  Sum_probs=92.0

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p-~~~~a~~~lg~  214 (498)
                      ...+..+.+.|.+.+..++.+.++.+++|+++.....           ..++++++..++..++.+ | ++.+++|+||.
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            4566778899999999999999999999999999773           223889999999999999 7 57899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                      .+.+    +|+|++|.       .+++++|+++|+|.++...+-.+-.+
T Consensus        80 ~~~k----l~~Y~~A~-------~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           80 GNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999    99999999       79999999999999998877665443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=4.1e-07  Score=79.45  Aligned_cols=107  Identities=9%  Similarity=0.007  Sum_probs=92.5

Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNW  257 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g---~~~eA~~~~~~Al~~~~~Al~l~-P-~~~~a~~~l  257 (498)
                      ...+.+..+.+.|.+.+..++.+..+.+++|.++.+    ..   ++++++       ..++..++.+ | ++.+++++|
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI-------~lLe~ll~~~~p~~~rd~lY~L   77 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGI-------VLLEELLPKGSKEEQRDYVFYL   77 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHH-------HHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHH-------HHHHHHHhcCCccchHHHHHHH
Confidence            345668899999999999999999999999999998    87   444666       7899999888 7 679999999


Q ss_pred             HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       258 g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      |..+.++|+|          ++|+.+++++|+++|++..+..-+-.+-....+
T Consensus        78 Av~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           78 AVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999          999999999999999999988877666555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.59  E-value=4.9e-07  Score=72.61  Aligned_cols=73  Identities=11%  Similarity=-0.055  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcC---cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010864          247 NWNSPQALNNWGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  323 (498)
Q Consensus       247 ~P~~~~a~~~lg~~l~~~g~---~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~  323 (498)
                      +|+++..+..+|.++...++   .          ++|...|++|++++|+++.+++.+|.+++..|+             
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~----------~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-------------   58 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMT----------DEVSLLLEQALQLEPYNEAALSLIANDHFISFR-------------   58 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-------------
Confidence            68999999999999987665   6          999999999999999999999999999999999             


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          324 VSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       324 ~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                            |.+|+.+|+++++.+|..+
T Consensus        59 ------y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           59 ------FQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             ------HHHHHHHHHHHHTCCCTTC
T ss_pred             ------HHHHHHHHHHHHhhCCCCc
Confidence                  9999999999999999843

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.52  E-value=4.4e-07  Score=72.89  Aligned_cols=72  Identities=15%  Similarity=-0.026  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864          202 CPTLHDAFYNWAIAISDRAKMRGR---TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR  278 (498)
Q Consensus       202 ~p~~~~a~~~lg~~~~~~~~~~g~---~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~  278 (498)
                      +|+++..+..+|.++..    .++   ..+|.       ..++++++++|+++.+++.+|.++.+.|+|          +
T Consensus         2 ~p~~~~~~~~~a~al~~----~~~~~~~~~A~-------~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~   60 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY----LHKQAMTDEVS-------LLLEQALQLEPYNEAALSLIANDHFISFRF----------Q   60 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH----TTTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------H
T ss_pred             CCCCHHHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------H
Confidence            68999999999999976    655   68888       799999999999999999999999999999          9


Q ss_pred             HHHHHHHHHHHhcCCC
Q 010864          279 TAISKFRAAIQLQFDF  294 (498)
Q Consensus       279 ~Ai~~~~~Al~l~P~~  294 (498)
                      +|+.+|+++++.+|.+
T Consensus        61 ~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           61 EAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHhhCCCC
Confidence            9999999999999884

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.50  E-value=6.8e-07  Score=73.13  Aligned_cols=86  Identities=13%  Similarity=0.111  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      ++.-.+.+|..+..    .|+|..|+.-|++|+..+..--...+....++.+||.++.++|++          +.|+.++
T Consensus         4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~----------~~A~~~~   69 (104)
T 2v5f_A            4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLT   69 (104)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------HHHHHHH
Confidence            35667899999999    999999996555555444211111345789999999999999999          9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHH
Q 010864          285 RAAIQLQFDFHRAIYNLGTV  304 (498)
Q Consensus       285 ~~Al~l~P~~~~a~~~Lg~~  304 (498)
                      +++++++|++..+..|++..
T Consensus        70 ~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           70 KKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHhhHHHH
Confidence            99999999999999999843

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.47  E-value=1.8e-06  Score=70.52  Aligned_cols=79  Identities=15%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-------PTLHDAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-------p~~~~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      ++.-.+.+|..++..++              |..|+..|++|++..       +....++.+||.++.+    +|++++|
T Consensus         4 sa~dc~~lG~~~~~~~~--------------y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A   65 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA   65 (104)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             CHHHHHHHHHHHHHccc--------------hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHH
Confidence            45678899999999999              999999999999973       3467899999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          230 EELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       230 ~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                      +       ..++++++++|++..+++|++.+
T Consensus        66 ~-------~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           66 L-------LLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             H-------HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             H-------HHHHHHHhcCCCCHHHHhhHHHH
Confidence            9       69999999999999999999843

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.38  E-value=9.9e-06  Score=88.32  Aligned_cols=168  Identities=10%  Similarity=0.006  Sum_probs=131.5

Q ss_pred             HhhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-----------C
Q 010864          135 SRQRILTFAA-KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----------C  202 (498)
Q Consensus       135 ~~~g~~~~A~-~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----------~  202 (498)
                      ...|+.++|+ ..|++|+..+|.+...|..++......|+              +++|...|++++..           .
T Consensus       354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------------~e~aR~iyek~l~~l~~~~~~~~~~~  419 (679)
T 4e6h_A          354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------------IPEIETTILSCIDRIHLDLAALMEDD  419 (679)
T ss_dssp             HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            3467778897 99999999999999999999999999999              99999999999975           2


Q ss_pred             CC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------HHHHHHHH
Q 010864          203 PT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWK-----------------------------QATKNYEK  242 (498)
Q Consensus       203 p~-----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-----------------------------~Al~~~~~  242 (498)
                      |.           ...+|...+.....    .|..+.|...|.                             +|.+.|++
T Consensus       420 p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~  495 (679)
T 4e6h_A          420 PTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL  495 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            53           33466666666555    666666665443                             34456667


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCC
Q 010864          243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTV  319 (498)
Q Consensus       243 Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~  319 (498)
                      +++..|+++..|..++......|+.          +.|...|++|+...|+   ...+|......-...|.         
T Consensus       496 ~Lk~~p~~~~~w~~y~~fe~~~~~~----------~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~---------  556 (679)
T 4e6h_A          496 GLKYFATDGEYINKYLDFLIYVNEE----------SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS---------  556 (679)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC---------
T ss_pred             HHHHCCCchHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------
Confidence            7777777777777777777777777          9999999999999883   45677777777777787         


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          320 NPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       320 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                                ...+...+.++.+..|++..
T Consensus       557 ----------~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          557 ----------LNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             ----------SHHHHHHHHHHHHHSTTCCH
T ss_pred             ----------HHHHHHHHHHHHHhCCCCcH
Confidence                      67788899999999999763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.92  E-value=0.00056  Score=71.75  Aligned_cols=145  Identities=10%  Similarity=-0.010  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI---  216 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~---  216 (498)
                      .+.....|++++...|..+..|+..+..+...|+              .++|...|++|+.. |.+...|+..+...   
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~--------------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~  259 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ--------------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE  259 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh
Confidence            3456789999999999999999999999999999              99999999999999 99876666554431   


Q ss_pred             ---HHHHHHc--CC--------HHHH-------------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-Ccch
Q 010864          217 ---SDRAKMR--GR--------TKEA-------------EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVP  269 (498)
Q Consensus       217 ---~~~~~~~--g~--------~~eA-------------~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~  269 (498)
                         ...+...  ..        ....             ....+.|...|.+| ...+.....|...+.+-...+ +.  
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~--  336 (493)
T 2uy1_A          260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR--  336 (493)
T ss_dssp             HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS--
T ss_pred             HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh--
Confidence               0000000  00        0000             01123455788888 433345667777777766666 47  


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       270 a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                              +.|...|+++++..|+.+..+...+......|+
T Consensus       337 --------~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          337 --------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             --------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence                    999999999999999998888777777777775

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.83  E-value=0.00023  Score=59.82  Aligned_cols=105  Identities=12%  Similarity=0.017  Sum_probs=89.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p-~~~~a~~~lg~  214 (498)
                      ...+..+...|.+.+..++...++-+++|+++.....           ..+..++|..++..++-+ | ..-+++|.||.
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-----------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv   82 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   82 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            4566778888999999899999999999999988776           233566999999999887 5 56789999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                      .+.+    +|+|.+|.       .+++..|+.+|+|.++......+--+
T Consensus        83 g~yk----lg~Y~~A~-------~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           83 GNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999    99999999       79999999999999998877666443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.76  E-value=0.00028  Score=59.26  Aligned_cols=101  Identities=10%  Similarity=0.021  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHh
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNWGLALQEL  264 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P-~~~~a~~~lg~~l~~~  264 (498)
                      .+..+...|.+.+..++....+.+++|.++.+    ......-.    +++..++..+..+ | ..-..++.||..++++
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S~~~~d~~----~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDDIR----KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----CCCHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence            47788889999999889999999999999998    77766622    3447888888777 5 5778999999999999


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                      |+|          ++|..+++..|++.|++..+..-...+-
T Consensus        88 g~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           88 KEY----------EKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             TCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999          9999999999999999988776555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.73  E-value=0.0073  Score=63.33  Aligned_cols=185  Identities=10%  Similarity=-0.037  Sum_probs=138.7

Q ss_pred             HHHHhhhcchhhHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 010864          122 LINSVTGVDEEGRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR  200 (498)
Q Consensus       122 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~  200 (498)
                      .++..+..    +.+.|++++|+..|++..+.. .-+...|+.+=.++...+.     .......+.+++|.+.|++...
T Consensus        28 ~l~~~id~----c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-----~~~~~~~~~l~~A~~lf~~M~~   98 (501)
T 4g26_A           28 LLKQKLDM----CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-----ATESSPNPGLSRGFDIFKQMIV   98 (501)
T ss_dssp             HHHHHHHH----TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-----CSSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-----hhhhhhcchHHHHHHHHHHHHH
Confidence            34455544    678999999999999998764 2245667666555544433     1122345668999999999887


Q ss_pred             hCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864          201 LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIV  277 (498)
Q Consensus       201 l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~  277 (498)
                      ..-. +..+|+.+-.+|.+    .|++++|.+       .|++..+.  .| +..+|+.+-..|.+.|+.          
T Consensus        99 ~G~~Pd~~tyn~lI~~~~~----~g~~~~A~~-------l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~----------  156 (501)
T 4g26_A           99 DKVVPNEATFTNGARLAVA----KDDPEMAFD-------MVKQMKAFGIQP-RLRSYGPALFGFCRKGDA----------  156 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHH----HTCHHHHHH-------HHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH----------
T ss_pred             hCCCCCHHHHHHHHHHHHh----cCCHHHHHH-------HHHHHHHcCCCC-ccceehHHHHHHHHCCCH----------
Confidence            6432 67889999999999    999999994       66665544  34 678899999999999999          


Q ss_pred             HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 010864          278 RTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA--LKPSYSVYSSA  353 (498)
Q Consensus       278 ~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--l~p~~~~~~~~  353 (498)
                      ++|...|++..+.  .|+ ...|..|-.+|.+.|+                   .++|...+++.-+  ..|+...|...
T Consensus       157 ~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~-------------------~d~A~~ll~~Mr~~g~~ps~~T~~~l  216 (501)
T 4g26_A          157 DKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKN-------------------ADKVYKTLQRLRDLVRQVSKSTFDMI  216 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCC-------------------HHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            9999999999875  455 7789999999999998                   7888888877554  56777766555


Q ss_pred             HHHH
Q 010864          354 LRLV  357 (498)
Q Consensus       354 l~~~  357 (498)
                      ....
T Consensus       217 ~~~F  220 (501)
T 4g26_A          217 EEWF  220 (501)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.40  E-value=0.00059  Score=59.93  Aligned_cols=117  Identities=7%  Similarity=-0.062  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------HDAFYNWAIAISDRAKMRGRTKEAE  230 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---------~~a~~~lg~~~~~~~~~~g~~~eA~  230 (498)
                      +++.-...++..+.              |+.|+-....++.+..++         +.++..+|.+++.    .++|..|.
T Consensus        22 ~l~dqik~L~d~~L--------------Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~   83 (167)
T 3ffl_A           22 NVIDHVRDMAAAGL--------------HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAV   83 (167)
T ss_dssp             CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             HHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHH
Confidence            44555566677777              999999999988874322         3478999999999    99999999


Q ss_pred             HHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          231 ELWKQATKNYEKAVQLN------------------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       231 ~~~~~Al~~~~~Al~l~------------------P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      ..|++|+...+...+..                  +...+..+.++.||.+++++          ++|+..++.. -..-
T Consensus        84 ~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~----------~~Ai~~Le~I-p~k~  152 (167)
T 3ffl_A           84 SKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD----------KDAIAILDGI-PSRQ  152 (167)
T ss_dssp             HHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH----------HHHHHHHHTS-CGGG
T ss_pred             HHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH----------HHHHHHHhcC-Cchh
Confidence            99999987776433221                  22347899999999999999          9999987653 2234


Q ss_pred             CCHHHHHHHHHHH
Q 010864          293 DFHRAIYNLGTVL  305 (498)
Q Consensus       293 ~~~~a~~~Lg~~~  305 (498)
                      ..+.+...||.+|
T Consensus       153 Rt~kvnm~LakLy  165 (167)
T 3ffl_A          153 RTPKINMLLANLY  165 (167)
T ss_dssp             CCHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHh
Confidence            5677888888765

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.00018  Score=59.24  Aligned_cols=105  Identities=15%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-...     ....|+++||+|....|..+.....                ......|+|..+..++.+.+.. 
T Consensus         9 ~~~G~L~K~~~-----~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~~-   66 (115)
T 2dn6_A            9 LKQGYMMKKGH-----RRKNWTERWFVLKPNIISYYVSEDL----------------KDKKGDILLDENCCVESLPDKD-   66 (115)
T ss_dssp             SEEEEEEEECT-----TSSCEEEEEEEECSSCEEEESSTTC----------------SSEEEEECCCTTCEEEEECCCT-
T ss_pred             eEEEEEEecCC-----CCCCcEEeEEEEECCEEEEeCCCCC----------------cccCcEEEecCcEEEEECCCCC-
Confidence            34666654211     2357999999998876665442211                1235578888777776654422 


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhhcccchh
Q 010864          446 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYARGKADVL  492 (498)
Q Consensus       446 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  492 (498)
                      ...+.|.|.|.....||.|+|.++++.|++||+.+......|..-..
T Consensus        67 ~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~~~~~~  113 (115)
T 2dn6_A           67 GKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSGPS  113 (115)
T ss_dssp             TCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            34578888876666699999999999999999999998887765443

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.26  E-value=7.8e-05  Score=66.62  Aligned_cols=105  Identities=12%  Similarity=0.186  Sum_probs=65.9

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccc---cC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSAC---AD  442 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  442 (498)
                      +..|||.-............|+++||+|+...|..+-......            ........|+|..+..++.+   .+
T Consensus         4 ikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~------------~~~~~~G~I~L~~~~~ve~~~~~~~   71 (169)
T 1btk_A            4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG------------RRGSKKGSIDVEKITCVETVVPEKN   71 (169)
T ss_dssp             CEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT------------EEEEEEEEEEGGGEEEEEECCCCSS
T ss_pred             EEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC------------CCCceeeEEECcceEEEEeccCCCC
Confidence            3567776432211111235799999999988777655421000            00123456788877766654   22


Q ss_pred             CC--CC-----------CC--------CeeeEeecCCceeeeecChhhhhhHHHHHHHHHH
Q 010864          443 LT--LP-----------PG--------AGLCIETIHGPVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       443 ~~--~p-----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      .+  .+           +|        +.|.|-|.....||.|+|.+++++|++||+-+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           72 PPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             CCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             cchhcccccccCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence            11  11           11        7888887777789999999999999999997653

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.25  E-value=0.00015  Score=64.47  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             hhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-
Q 010864          365 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-  443 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  443 (498)
                      -+.+|+|.-.....-......|+++||+|....|..+......               ......|+|..+..++.+.+. 
T Consensus        15 ~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~---------------~~~~G~I~L~~~~~v~~~~~~~   79 (164)
T 2lul_A           15 TILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEK---------------KYRKGFIDVSKIKCVEIVKNDD   79 (164)
T ss_dssp             EEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSS---------------CCCCCEEEGGGCCEEEECCCCS
T ss_pred             eeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcc---------------cccccEEEEeeeEEEEeccccc
Confidence            3456777643222222223469999999988777665321110               112346888888887766553 


Q ss_pred             ---CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          444 ---TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       444 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                         .....+.|.|.|.....||.|+|.++++.|++||+-|-
T Consensus        80 ~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i  120 (164)
T 2lul_A           80 GVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEI  120 (164)
T ss_dssp             SSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence               23366788888766667999999999999999998763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.21  E-value=0.0047  Score=52.71  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCC
Q 010864          247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS  325 (498)
Q Consensus       247 ~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~  325 (498)
                      +.-+.++.+++++++.+..+.       .+..++|..++..++..|. .-+.+|.|+..++++|+               
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~-------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---------------   92 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---------------   92 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---------------
T ss_pred             CCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---------------
Confidence            356899999999999988765       5568999999999999885 56789999999999999               


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864          326 PNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  359 (498)
Q Consensus       326 ~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~  359 (498)
                          |..|..|....|+..|+|........++.+
T Consensus        93 ----Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A           93 ----YSMAKRYVDTLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             ----HHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                999999999999999999977776666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.13  E-value=0.035  Score=57.94  Aligned_cols=149  Identities=14%  Similarity=-0.021  Sum_probs=100.2

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------HhcCcCC-CC--------CC-----------CCchhhhH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ------ESADNVS-LD--------ST-----------SPSKDALL  188 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~------~~g~~~~-~~--------~~-----------~~~~~~~~  188 (498)
                      .+.|+.+.|...|++++.. |.+...|...+....      ..-.... ..        ..           .....+.+
T Consensus       224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~  302 (493)
T 2uy1_A          224 IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL  302 (493)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence            4578999999999999999 998777765554310      0000000 00        00           00123448


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       189 ~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +.|...|.+| ...+.....|...+.+-..    .+ +.+.|.       ..|+++++..|+.+..|..++......|+.
T Consensus       303 ~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~----~~~d~~~ar-------~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          303 ELFRKLFIEL-GNEGVGPHVFIYCAFIEYY----ATGSRATPY-------NIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHH-TTSCCCHHHHHHHHHHHHH----HHCCSHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHh-hCCCCChHHHHHHHHHHHH----HCCChHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence            8899999999 4333355666665655554    44 577777       688888888899998888888888888888


Q ss_pred             chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                                +.|...|+++    +.....|......-...|+
T Consensus       371 ----------~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          371 ----------ENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             ----------HHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             ----------HHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence                      9999999998    3456666666655555565

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.10  E-value=0.006  Score=51.40  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=80.6

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 010864          139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAIS  217 (498)
Q Consensus       139 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~  217 (498)
                      ++.....-|.+-+ ...-.+.+-+++|+++.....           ..+..++|..++..++.+|. .-+++|.||..+.
T Consensus        22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~-----------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y   89 (134)
T 3o48_A           22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCY   89 (134)
T ss_dssp             HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            3344444454433 222357889999999988766           34577999999999999995 5789999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      +    +|+|.+|.       .+.+..|+.+|+|.++......+--+.
T Consensus        90 k----lgdY~~Ar-------~y~d~lL~~eP~N~QA~~Lk~~Ie~ki  125 (134)
T 3o48_A           90 K----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVEDKI  125 (134)
T ss_dssp             H----HTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             H----hhhHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            9    99999999       799999999999999988777665443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.09  E-value=0.0018  Score=56.87  Aligned_cols=102  Identities=13%  Similarity=0.055  Sum_probs=76.9

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC---
Q 010864          135 SRQRILTFAAKRYANAIERNPED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---  202 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---  202 (498)
                      ...|.|+.|+.....++.+..++         ..++..+|.+++..++              |.+|...|++||.+.   
T Consensus        31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e--------------yrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE--------------YRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHCC
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHHH
Confidence            55788999999999877765333         3488999999999999              999999999998862   


Q ss_pred             ---CC-------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          203 ---PT-------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       203 ---p~-------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                         +.                   ..+..|.++.||.+    ++++.+|+.       .++ .+-..-..+.....||.+
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai~-------~Le-~Ip~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV----LKQDKDAIA-------ILD-GIPSRQRTPKINMLLANL  164 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHH----TTCHHHHHH-------HHH-TSCGGGCCHHHHHHHHHH
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHH----HCCHHHHHH-------HHh-cCCchhcCHHHHHHHHHH
Confidence               11                   12688999999999    999999993       332 222223467777777776


Q ss_pred             HH
Q 010864          261 LQ  262 (498)
Q Consensus       261 l~  262 (498)
                      |.
T Consensus       165 y~  166 (167)
T 3ffl_A          165 YK  166 (167)
T ss_dssp             CC
T ss_pred             hc
Confidence            53

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.09  E-value=0.0056  Score=51.59  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864          249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN  327 (498)
Q Consensus       249 ~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~  327 (498)
                      -.+++.+++++++.+....       .+..++|..++..++.+|. .-+.+|.|+..++++|+                 
T Consensus        38 vs~qt~F~yAw~Lv~S~~~-------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-----------------   93 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-----------------   93 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-----------------
T ss_pred             CChhhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-----------------
Confidence            3789999999999988764       5568999999999999984 47889999999999999                 


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864          328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS  359 (498)
Q Consensus       328 ~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~  359 (498)
                        |..|..|....+++.|+|........++.+
T Consensus        94 --Y~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A           94 --YSMAKRYVDTLFEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             --HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence              999999999999999999987776666543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.05  E-value=0.01  Score=50.57  Aligned_cols=101  Identities=13%  Similarity=0.093  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISD  218 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~  218 (498)
                      +.....-|.+-+. +.-..++.+++|+++.....           ..+..+++..++..++-+|. .-+++|.||..+.+
T Consensus        22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~-----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk   89 (144)
T 1y8m_A           22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK   89 (144)
T ss_dssp             HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH
Confidence            3334444444311 34578999999999998876           34578999999999999995 56799999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                          +|+|.+|.       .+.+..|+.+|+|.++......+-.+
T Consensus        90 ----l~~Y~~Ar-------~y~d~lL~~eP~n~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A           90 ----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVEDK  123 (144)
T ss_dssp             ----TTCHHHHH-------HHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             ----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                99999999       79999999999999988776665443

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.98  E-value=0.00032  Score=59.35  Aligned_cols=101  Identities=16%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccch--hh-hhhhcccchhhccccccCCCCCCCCCCccccccCCccccccccc-C
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNH--EG-LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-D  442 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  442 (498)
                      ..|||.--..    .....|+++||+|+.  .. +.....+....            ........|+|..+..|..+. .
T Consensus        17 ~~G~L~K~g~----~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~------------~~~~~~G~I~L~~~~~V~~~~~~   80 (126)
T 1v5p_A           17 ICGFLDIEDN----ENSGKFLRRYFILDTQANCLLWYMDNPQNLA------------VGAGAVGSLQLTYISKVSIATPK   80 (126)
T ss_dssp             EECCEEEECT----TCSSCEEEEEEEEETTTTEEEEESSCTTTSC------------TTCCCSEEEETTTCCEEEECCTT
T ss_pred             eEEEEEEeCC----CCCCCccceEEEEecCCCCEEEEECCCCCCC------------CCceeeEEEECCCccEEecCCcc
Confidence            3688765321    124689999999983  22 23322211000            001234567777766666554 2


Q ss_pred             CCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010864          443 LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       443 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                      ...-..++|.|.|..-..||.|+|.++++.|++||+-+..|
T Consensus        81 ~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           81 QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             TSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             cCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            22235578888766555699999999999999999976543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.97  E-value=0.014  Score=50.30  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=96.1

Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcCcchHH
Q 010864          200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGLALQELSAIVPAR  271 (498)
Q Consensus       200 ~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--------~~~a~~~lg~~l~~~g~~~~a~  271 (498)
                      -+.|++++.|......+.+    .|+...- .+.++-+..|++|+..-|-        +...|.+++.. ...++.    
T Consensus         7 ~~~p~~yd~W~~yl~llE~----~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~----   76 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEK----NSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEP----   76 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHH----HTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCG----
T ss_pred             eeCCCCHHHHHHHHHHHHH----cCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCH----
Confidence            3689999999999999988    8888222 4445555788888866553        56677777755 566777    


Q ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH-HH
Q 010864          272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VY  350 (498)
Q Consensus       272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~~  350 (498)
                            ++|...|+.++.+...++.+|...+..-..+|+                   ...|...+.+|+.+.|... ..
T Consensus        77 ------d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn-------------------l~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           77 ------DDARDYFQMARANCKKFAFVHISFAQFELSQGN-------------------VKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             ------GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTTCBCHHHH
T ss_pred             ------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHhccCCCcHHHH
Confidence                  999999999999999999999999999889998                   8999999999999999766 45


Q ss_pred             HHHHHHHH
Q 010864          351 SSALRLVR  358 (498)
Q Consensus       351 ~~~l~~~~  358 (498)
                      ..++.-+.
T Consensus       132 e~a~~nl~  139 (161)
T 4h7y_A          132 EIALRNLN  139 (161)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            55555444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.88  E-value=0.015  Score=50.13  Aligned_cols=128  Identities=12%  Similarity=0.086  Sum_probs=93.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHc
Q 010864          152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--------LHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       152 ~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--------~~~a~~~lg~~~~~~~~~~  223 (498)
                      -+.|++++.|......+...|+        ...+..+++-++.|++|+..-|-        +...|.+.+.. ..    .
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~--------p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i   73 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSV--------PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----I   73 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTC--------SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----H
T ss_pred             eeCCCCHHHHHHHHHHHHHcCC--------CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----h
Confidence            4689999999999999988887        11125568999999999998664        23444555533 34    6


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      ++.++|.       ..|+.++.+....+..|...+..-.++|+.          ..|...+.+|+.+.|.....+ ..+.
T Consensus        74 ~D~d~aR-------~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~l-e~a~  135 (161)
T 4h7y_A           74 QEPDDAR-------DYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEML-EIAL  135 (161)
T ss_dssp             HCGGGCH-------HHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHHH-HHHH
T ss_pred             cCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHHH-HHHH
Confidence            7777777       566666666778899999999999999998          999999999999999865443 3344


Q ss_pred             HHHHcch
Q 010864          304 VLYGLAE  310 (498)
Q Consensus       304 ~~~~~g~  310 (498)
                      .-.+.|+
T Consensus       136 ~nl~~~~  142 (161)
T 4h7y_A          136 RNLNLQK  142 (161)
T ss_dssp             HHHHTTC
T ss_pred             HhhhcCC
Confidence            4445554

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.85  E-value=0.00069  Score=55.89  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccc--hhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLN--HEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||.-..     .....|+++||+|.  ...|..+.....                ......|+|..+..+.++...
T Consensus         9 ~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~   67 (117)
T 1v5u_A            9 SYEGILYKKG-----AFMKPWKARWFVLDKTKHQLRYYDHRMD----------------TECKGVIDLAEVEAVAPGTPT   67 (117)
T ss_dssp             SEEEEEEECC-----CSSSCCEEEEEEEETTTTEEEEESSSSC----------------SSCCCEEEGGGEEEEECCCCC
T ss_pred             cEEEEEEecC-----CCCCCceeeEEEEECCCCEEEEeecCCC----------------CccceEEEccCcEEEeecCcc
Confidence            3467776432     12458999999998  545555432211                123456888888777765532


Q ss_pred             -CC----CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010864          444 -TL----PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       444 -~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                       ..    ...++|.|.|.....||.|+|.++++.|++||+-+
T Consensus        68 ~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~  109 (117)
T 1v5u_A           68 IGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             TTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             ccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHH
Confidence             22    24578999876556689999999999999999753

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.82  E-value=0.001  Score=57.90  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             hhhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          364 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      |....|||.--.     .....|+++||+|....|..+-.....                .....|+|.....+.. .+.
T Consensus        17 pv~keG~L~Kkg-----~~~k~WkrRWFvLk~~~L~Yyk~~~d~----------------~~~g~I~L~~~~~~~~-~~~   74 (149)
T 1x1f_A           17 PLYFEGFLLIKR-----SGYREYEHYWTELRGTTLFFYTDKKSI----------------IYVDKLDIVDLTCLTE-QNS   74 (149)
T ss_dssp             CEEEEEEEEEEC-----TTCCSCEEEEEEEETTEEEEESCSSCS----------------SCSEECCCSSCCEEEE-CCC
T ss_pred             CccEEEEEEEeC-----CCCCCceeEEEEEcCCEEEEEeCCCcc----------------ccCcEEECCCceEEee-ccC
Confidence            455678887532     223689999999987766654332221                1234677776654411 111


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010864          444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                      .-...+.|+|.|.....||.|+|.++++.|+.||+-|..+
T Consensus        75 ~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~  114 (149)
T 1x1f_A           75 TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL  114 (149)
T ss_dssp             TTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             CCCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence            1124678999887777899999999999999999977654

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.79  E-value=0.0013  Score=54.11  Aligned_cols=95  Identities=18%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  446 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  446 (498)
                      ..|||.-..     .....|+++||+|....|..+.....                ......|+|.....++...+..-+
T Consensus        10 ~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v~~~~~~~~~~   68 (118)
T 1v89_A           10 KMGWLKKQR-----SIVKNWQQRYFVLRAQQLYYYKDEED----------------TKPQGCMYLPGCTIKEIATNPEEA   68 (118)
T ss_dssp             EEEEEEEEC-----SSSSCEEEEEEEEETTEEEEESSSSC----------------CSCSEEECSTTEEEEEECCCSSCC
T ss_pred             EEEEEEecC-----CCCCCccEEEEEEECCEEEEEeCCCC----------------CCceEEEECCCCEEEEcCcCcccC
Confidence            456665431     12347999999998876665433221                123445666655444333333345


Q ss_pred             CCCeeeEeec-------CC-ceeeeecChhhhhhHHHHHHHHHH
Q 010864          447 PGAGLCIETI-------HG-PVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       447 ~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ..++|.|.|.       .+ ..||.|+|.++++.|++||+.+..
T Consensus        69 ~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           69 GKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            6788998872       33 358999999999999999997753

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.78  E-value=0.0018  Score=53.13  Aligned_cols=85  Identities=21%  Similarity=0.251  Sum_probs=60.1

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCc-ee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGP-VF  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~  461 (498)
                      ...|+++||+|....|..+.....                ......|+|..+..+.++.+. -...++|.|.|..+. .|
T Consensus        18 ~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~~~~~~~~-~~~~~~F~i~~~~~r~~~   80 (113)
T 1pls_A           18 FNTWKPMWVVLLEDGIEFYKKKSD----------------NSPKGMIPLKGSTLTSPCQDF-GKRMFVFKITTTKQQDHF   80 (113)
T ss_dssp             SSCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEESSSCCEESSCCSS-CCSSSEEEEEETTTEEEE
T ss_pred             CCCceEEEEEEECCEEEEEeCCCC----------------CCcceEEEcCCCEEEEecCCC-CCCccEEEEEcCCCCEEE
Confidence            357999999998877665433211                123456777777766644432 235678999877654 58


Q ss_pred             eeecChhhhhhHHHHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      |.|+|.++++.|+++|+.+..-.
T Consensus        81 l~a~s~~e~~~Wi~ai~~~~~~~  103 (113)
T 1pls_A           81 FQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999876543

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=96.65  E-value=0.00045  Score=57.79  Aligned_cols=97  Identities=22%  Similarity=0.338  Sum_probs=66.1

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-..     .....|+++||+|....|..+.....                ......|+|.++..+..|.....
T Consensus        15 ~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~~v~~~~~~~~   73 (125)
T 1eaz_A           15 IKAGYCVKQG-----AVMKNWKRRYFQLDENTIGYFKSELE----------------KEPLRVIPLKEVHKVQECKQSDI   73 (125)
T ss_dssp             SEEEEEEEEC-----TTTCCEEEEEEEECSSEEEEESSTTC----------------SSCSEEEEGGGCCEEEECTTHHH
T ss_pred             cEEEEEEEeC-----CCCCCcceEEEEEeCCEEEEEcCCCC----------------CcceeEEEcccceEEeecccccc
Confidence            4567776431     12357999999998776665433221                12345678888777766543222


Q ss_pred             -CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010864          446 -PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       446 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                       ...++|.|.|.....||.|+|.++++.|++||+.+...
T Consensus        74 ~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~  112 (125)
T 1eaz_A           74 MMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA  112 (125)
T ss_dssp             HTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence             35678888876555689999999999999999987654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.65  E-value=0.11  Score=54.21  Aligned_cols=129  Identities=11%  Similarity=-0.001  Sum_probs=102.9

Q ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAI  214 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~~lg~  214 (498)
                      .+.+++|...|++..... .-+..+|+.+-..|...|+              +++|...|++..+..- -+...|+.+=.
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~--------------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~  148 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD--------------PEMAFDMVKQMKAFGIQPRLRSYGPALF  148 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCccceehHHHH
Confidence            456899999999988754 2267889999999999999              9999999999987632 26778888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--  290 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--  290 (498)
                      .|.+    .|+.++|.+       .|++..+.  .| +..+|+.|-.+|.+.|+.          ++|...|++..+.  
T Consensus       149 ~~~~----~g~~~~A~~-------l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~----------d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          149 GFCR----KGDADKAYE-------VDAHMVESEVVP-EEPELAALLKVSMDTKNA----------DKVYKTLQRLRDLVR  206 (501)
T ss_dssp             HHHH----TTCHHHHHH-------HHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTS
T ss_pred             HHHH----CCCHHHHHH-------HHHHHHhcCCCC-CHHHHHHHHHHHhhCCCH----------HHHHHHHHHHHHhCC
Confidence            8999    999999994       66666544  34 678899999999999999          9999999998764  


Q ss_pred             cCCCHHHHHHHH
Q 010864          291 QFDFHRAIYNLG  302 (498)
Q Consensus       291 ~P~~~~a~~~Lg  302 (498)
                      .|+ ...+..+-
T Consensus       207 ~ps-~~T~~~l~  217 (501)
T 4g26_A          207 QVS-KSTFDMIE  217 (501)
T ss_dssp             SBC-HHHHHHHH
T ss_pred             CcC-HHHHHHHH
Confidence            465 34444443

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.60  E-value=0.0012  Score=54.49  Aligned_cols=90  Identities=10%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.--..    .....|+++||+|....|..+.....                ......|+|..+..+++..    
T Consensus         9 ~~~G~L~K~~~----~~~~~WkkR~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~~v~~~~----   64 (115)
T 2cod_A            9 VKSGWLDKLSP----QGKRMFQKRWVKFDGLSISYYNNEKE----------------MYSKGIIPLSAISTVRVQG----   64 (115)
T ss_dssp             CEEEEEEECCS----SSSSCCEEEEEEECSSEEEEEESSCC----------------SSCCCEEETTTEEEEEEET----
T ss_pred             cEEEEEEEcCC----CCCCCCceEEEEEECCEEEEEcCCCC----------------cccCCEEECCcceEEEeCC----
Confidence            45677764311    12357999999998776665433222                1234467777777666543    


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          446 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       446 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                        .++|.|.|.....||.|+|.++++.|+++|+.+.
T Consensus        65 --~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           65 --DNKFEVVTTQRTFVFRVEKEEERNDWISILLNAL   98 (115)
T ss_dssp             --TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             --CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence              5788888665556899999999999999999764

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.49  E-value=0.002  Score=52.51  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-.     ......|+++||+|....|..+.....                ......|+|..+..+....+.  
T Consensus         9 ~~~G~L~K~-----~~~~~~Wk~RwfvL~~~~L~yyk~~~~----------------~~~~~~i~L~~~~~~~~~~~~--   65 (109)
T 1wgq_A            9 TMSGYLYRS-----KGSKKPWKHLWFVIKNKVLYTYAASED----------------VAALESQPLLGFTVTLVKDEN--   65 (109)
T ss_dssp             SCEEEEEEE-----SSTTSCCEEEEEEEETTEEEEESCTTC----------------SSCSEEEECSSEEEEECCCSS--
T ss_pred             eEEEEEEeC-----CCCCCCceeEEEEEeCCEEEEECCCCc----------------CccCceEECCCCEEEECCCCC--
Confidence            346666632     122358999999998766655432221                123446677666555443222  


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      .+.++|.|.|..+. .||.|+|.++++.|++||+.+
T Consensus        66 ~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a  101 (109)
T 1wgq_A           66 SESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             CSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            24578888876555 589999999999999999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.48  E-value=0.00084  Score=56.92  Aligned_cols=100  Identities=21%  Similarity=0.323  Sum_probs=56.5

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhcc-chhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVL-NHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (498)
                      ...|||.--.     .....|+++||+| ....|..+.......       ..|     ...+.+++.+|.....|.++.
T Consensus         9 ~~~G~L~K~g-----~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~-------~~g-----~i~l~~~~~~i~~~~~~~~v~   71 (130)
T 2d9v_A            9 VRGGWLWRQS-----SILRRWKRNWFALWLDGTLGYYHDETAQD-------EED-----RVVIHFNVRDIKVGQECQDVQ   71 (130)
T ss_dssp             EEEEEEEEEC-----SSSCCEEEEEEEEETTTEEEEESSSSTTS-------EEE-----EEECTTTEEEEEEGGGCSSCC
T ss_pred             eEEEEEEeec-----CccCCceeeEEEEccCCEEEEEeCCCCCC-------cCc-----eEecccceeEEeccccccccC
Confidence            3467766431     1235899999999 555555543322110       000     001111221222112233332


Q ss_pred             C----CCCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHH
Q 010864          445 L----PPGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       445 ~----p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      .    ...+.|.|.|..+.+ ||.|+|.++++.|+.||+.+..
T Consensus        72 ~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           72 PPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             CCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            2    346789998766554 8999999999999999998754

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.34  E-value=0.0025  Score=52.93  Aligned_cols=98  Identities=17%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchh--hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||.--...   .....|+++||+|...  .|..+.....                ......|+|..+..+...   
T Consensus         9 ~~~G~L~K~g~~---~~~k~WkkRwfvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~~~~~---   66 (119)
T 2dhk_A            9 KLCGYLSKFGGK---GPIRGWKSRWFFYDERKCQLYYSRTAQD----------------ANPLDSIDLSSAVFDCKA---   66 (119)
T ss_dssp             CCEEEEEECSCS---SSSCCCEEEEEEEETTTTEEEEESSTTC----------------CSCSEEEEGGGCEEEECT---
T ss_pred             cEEEEEEecCCC---CCCCCceeEEEEEECCccEEEEECCCCC----------------cccccEEECCCCEEEecC---
Confidence            346777643210   1235899999999876  4554332211                122445777766655421   


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhh
Q 010864          444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR  486 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  486 (498)
                       -...+.|.|.|..-..||.|+|.++++.|++||+.+.+-+..
T Consensus        67 -~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  108 (119)
T 2dhk_A           67 -DAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHN  108 (119)
T ss_dssp             -TGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence             124568888876444579999999999999999988766654

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=96.33  E-value=0.0025  Score=53.34  Aligned_cols=96  Identities=14%  Similarity=0.210  Sum_probs=60.0

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccccc-CCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DLT  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  444 (498)
                      ...|||.--..    .....|+++||+|....|..+.....                ......|+|.++. +..+. .-.
T Consensus        22 ~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~~~   80 (128)
T 2dkp_A           22 VRRGWLYKQDS----TGMKLWKKRWFVLSDLCLFYYRDEKE----------------EGILGSILLPSFQ-IALLTSEDH   80 (128)
T ss_dssp             CEEEEEEEECC----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSEEEEECGGGSE-EEECCGGGC
T ss_pred             EEEEEEEEeCC----CCCCCceeEEEEEeCCEEEEECCCCC----------------cccceEEEcCceE-EEEcCCccc
Confidence            45777754311    12357999999998766665432221                1123345665432 22221 123


Q ss_pred             CCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHHHHHH
Q 010864          445 LPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       445 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ....++|.|.|..+ ..||.|+|.++++.|++||+.+..
T Consensus        81 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           81 INRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             CSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            35668899987653 469999999999999999987754

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.30  E-value=0.0026  Score=52.80  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=59.1

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC-CC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-LT  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  444 (498)
                      ...|||.--..    .....|+++||+|....|..+.....                ......|+|.++. +..+.. -.
T Consensus        23 ~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~~~   81 (122)
T 2yry_A           23 TKAGWLFKQAS----SGVKQWNKRWFVLVDRCLFYYKDEKE----------------ESILGSIPLLSFR-VAAVQPSDN   81 (122)
T ss_dssp             EEEEEEEEECC----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEESTTCC-CEECCTTCS
T ss_pred             cEEEEEEEECC----CCCCCcEEEEEEEeCCEEEEECCCCC----------------CCcccEEEcCCCE-EEEcCcccc
Confidence            45677764311    12357999999998766655432221                1123456666543 322211 23


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010864          445 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       445 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ....++|.|.+..+. .||.|+|.++++.|++||+.+.
T Consensus        82 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           82 ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             CSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            345678888655444 5899999999999999998764

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.24  E-value=0.0036  Score=51.43  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=58.9

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC-CC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-LT  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  444 (498)
                      ...|||.--..    .....|+++||+|....|..+.....                ......|+|.++. +..+.. -.
T Consensus        12 ~~~G~L~K~~~----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~~~   70 (117)
T 2d9y_A           12 TKAGWLFKQAS----SGVKQWNKRWFVLVDRCLFYYKDEKE----------------ESILGSIPLLSFR-VAAVQPSDN   70 (117)
T ss_dssp             CEEEEEEEECT----TSSSCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEECSSCE-EEECCTTTT
T ss_pred             eEEEEEEEeCC----CCCCCceEEEEEECCCEEEEECCCCC----------------CCcCCEEEeCCeE-EEEcCcccc
Confidence            34677654311    12357999999998766665432211                1123456666543 222211 23


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010864          445 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       445 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .+..++|.|.+..+. .||.|+|.++++.|++||+.+.
T Consensus        71 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~  108 (117)
T 2d9y_A           71 ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  108 (117)
T ss_dssp             CCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            456678888654444 5899999999999999998764

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=96.22  E-value=0.0032  Score=51.02  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchh--hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-  443 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  443 (498)
                      ..|||.-..     .....|+++||+|...  .|..+.....                ......|+|....-....... 
T Consensus         9 ~~G~L~K~g-----~~~~~Wk~R~fvL~~~~~~L~yyk~~~~----------------~~~~g~i~L~~~~v~~~~~~~~   67 (109)
T 2i5f_A            9 KQGCLLKQG-----HRRKNWKVRKFILREDPAYLHYYDPAGA----------------EDPLGAIHLRGCVVTSVESNSN   67 (109)
T ss_dssp             EEEEEEEEC-----TTTCCEEEEEEEEETTTTEEEEECTTSC----------------SSCSEEEECTTCEEEEECC---
T ss_pred             EEEEEEEcC-----CCCCCceEEEEEEeCCCcEEEEECCCCC----------------CCccEEEECCCCEEEEccCCcc
Confidence            456665421     1234699999999865  3444322111                112345666653211111111 


Q ss_pred             --CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010864          444 --TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       444 --~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  480 (498)
                        .....++|.|.|..+. .||.|+|.++++.|++||+.+
T Consensus        68 ~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~  107 (109)
T 2i5f_A           68 GRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  107 (109)
T ss_dssp             -----CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence              1126788999987766 588999999999999999865

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=96.16  E-value=0.0041  Score=51.61  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC-CC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD-LT  444 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  444 (498)
                      ...|||.--..    .....|+++||+|....|..+.....                ......|+|..+. +..+.. ..
T Consensus        12 ~~~G~L~K~~~----~~~~~WkkR~fvL~~~~L~yy~~~~~----------------~~~~g~i~l~~~~-v~~~~~~~~   70 (123)
T 1upq_A           12 HIRGWLHKQDS----SGLRLWKRRWFVLSGHCLFYYKDSRE----------------ESVLGSVLLPSYN-IRPDGPGAP   70 (123)
T ss_dssp             EEEEEEEEECS----SSSCCEEEEEEEEETTEEEEESSTTC----------------CSCCEEEEGGGCE-EEECCSSCT
T ss_pred             eEEEEEEeeCC----CCCCCceeEEEEEeCCEEEEECCCCC----------------cccceEEECCCCE-EEECCCCcc
Confidence            45777764321    12357999999998766665432221                1123345555432 333322 22


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010864          445 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       445 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ....+.|.|.|..+. .||.|+|.++++.|++||..+..
T Consensus        71 ~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  109 (123)
T 1upq_A           71 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR  109 (123)
T ss_dssp             TSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence            336788888766544 58899999999999999998764

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=96.15  E-value=0.0033  Score=50.66  Aligned_cols=82  Identities=10%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC--CCCCCCCeeeEeecCC-ce
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD--LTLPPGAGLCIETIHG-PV  460 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~-~~  460 (498)
                      ..|+++||+|....|..+.....                ......|+|..+.. ..+.+  ......++|.|.|..+ ..
T Consensus        21 ~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v-~~~~~~~~~~~~~~~F~i~~~~~r~~   83 (108)
T 1u5d_A           21 SEWQKRWCVVSRGLFYYYANEKS----------------KQPKGTFLIKGYSV-RMAPHLRRDSKKESCFELTSQDRRTY   83 (108)
T ss_dssp             EEEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEE-EECGGGCSSGGGGGEEEEECSSSCCE
T ss_pred             cCceeeEEEEeCCEEEEecCCCC----------------CCCCEEEEecceEE-EeCCccccccCCcceEEEEcCCCcEE
Confidence            68999999998766655432221                11234566665552 22211  1223568899987764 46


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ||.|+|.++++.|++||+.+..
T Consensus        84 ~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           84 EFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999997754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.10  E-value=0.0039  Score=52.29  Aligned_cols=94  Identities=24%  Similarity=0.377  Sum_probs=56.4

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccch--hhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNH--EGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||.-..     .....|+++||+|..  .-|..+......               ......|+|... .+..+.+.
T Consensus        19 ~~~G~L~K~g-----~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~---------------~~~~g~i~L~~~-~v~~~~~~   77 (129)
T 1x1g_A           19 VKQGYLAKQG-----HKRKNWKVRRFVLRKDPAFLHYYDPSKEE---------------NRPVGGFSLRGS-LVSALEDN   77 (129)
T ss_dssp             EEEEEEEEEC-----SSSSSEEEEEEEEEESSCEEEEECSSSCC---------------SSCSCCEESTTC-CCEECCSS
T ss_pred             EEEEEEEEEC-----CCCCCeeeEEEEEeCCCCeEEEeCCCCcC---------------CccceEEECcCC-EEEEeCCC
Confidence            4467776431     114689999999984  244443322010               112334555431 12222222


Q ss_pred             CCC-------CCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010864          444 TLP-------PGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       444 ~~p-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..|       ..++|.|.|..+. .||.|+|.++++.|++||+.+
T Consensus        78 ~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~  122 (129)
T 1x1g_A           78 GVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  122 (129)
T ss_dssp             SSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            222       4678999887765 689999999999999999876

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=96.07  E-value=0.0034  Score=52.49  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             hhhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          364 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      +....|||.-..     .....|+++||+|....|..+.....                ......|+|..+..+++..+ 
T Consensus        17 ~~~~~G~L~K~g-----~~~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~-   74 (126)
T 1fao_A           17 LGTKEGYLTKQG-----GLVKTWKTRWFTLHRNELKYFKDQMS----------------PEPIRILDLTECSAVQFDYS-   74 (126)
T ss_dssp             TTCEEEEEEEEC-----SSSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEEGGGCCEEEEECS-
T ss_pred             CccEEEEEEEcC-----CCCCCcccEEEEEECCEEEEeCCCCC----------------CCceeEEEccceEEEEeccc-
Confidence            345678876532     12457999999998776665432221                12345677777766665432 


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010864          444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                       -...++|.|.|.....||.|+|.++++.|++||+-+..-
T Consensus        75 -~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           75 -QERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             -SSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence             224578888875555699999999999999999976543

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=96.07  E-value=0.0028  Score=51.75  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=27.9

Q ss_pred             CCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHH
Q 010864          448 GAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       448 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .++|.|.|..+. .||.|+|.++++.|++||+-+.
T Consensus        76 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           76 DCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             GGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            468888765455 4899999999999999998764

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.07  E-value=0.0051  Score=51.05  Aligned_cols=87  Identities=14%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             chhhhhhhhccch--hhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCc-
Q 010864          383 HSDWKRSQFVLNH--EGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGP-  459 (498)
Q Consensus       383 ~~~w~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-  459 (498)
                      ...|+++||+|..  ..|..+.......              ......|+|..+. +.+..    ..++.|.|.|..+. 
T Consensus        21 ~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~--------------~~~~g~I~L~~~~-v~~~~----~~~~~F~i~~~~~r~   81 (120)
T 2d9x_A           21 VTGWQYRFFVLNNEAGLLEYFVNEQSRN--------------QKPRGTLQLAGAV-ISPSD----EDSHTFTVNAASGEQ   81 (120)
T ss_dssp             TTEEEEEEEEECTTTCEEEEESSGGGSS--------------SCCSEEEECTTCC-EECCS----SSSSCEEECCSSSCC
T ss_pred             CCCceEEEEEEECCCCEEEEEecCcccC--------------CCccceEEcceEE-EEecC----CCCCEEEEEcCCCCE
Confidence            3579999999974  3444433222210              0123345665543 22211    24588888876654 


Q ss_pred             eeeeecChhhhhhHHHHHHHHHHHHhhcc
Q 010864          460 VFLVADSWEALDGWLDAIRLVYTIYARGK  488 (498)
Q Consensus       460 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  488 (498)
                      .||.|+|.++++.|++||+.+......+.
T Consensus        82 ~~l~a~s~~e~~~Wi~al~~~~~~~~~~~  110 (120)
T 2d9x_A           82 YKLRATDAKERQHWVSRLQICTQHHTEAI  110 (120)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            48889999999999999998877665544

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=95.98  E-value=0.0034  Score=52.73  Aligned_cols=97  Identities=20%  Similarity=0.236  Sum_probs=59.5

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchh--hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||.-...     ....|+++||+|...  -|..+.....                ......|+|....-.......
T Consensus        19 ~~~G~L~K~g~-----~~~~Wk~R~fvL~~~~~~L~yy~~~~~----------------~~~~g~i~L~~~~v~~~~~~~   77 (129)
T 1x05_A           19 IKQGCLLKQGH-----RRKNWKVRKFILREDPAYLHYYDPAGA----------------EDPLGAIHLRGCVVTSVESNS   77 (129)
T ss_dssp             EEEEEEEECCS-----SCCCCEEEEEEEEETTTEEEEECSSCC----------------SSCSEEEECTTCEEEECCCCC
T ss_pred             eEEEEEEecCC-----CCCCCeeEEEEEeCCCCEEEEECCCCC----------------CcceeEEEccCCEEEEccCCc
Confidence            45777765311     234699999999865  2444322111                122345666653222211111


Q ss_pred             ---CCCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHHH
Q 010864          444 ---TLPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       444 ---~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                         ..-..+.|.|.|..+. .||.|+|.++++.|++||..+...
T Consensus        78 ~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           78 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             CSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             cccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence               1126788999877665 589999999999999999987653

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=95.90  E-value=0.0025  Score=50.35  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  463 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  463 (498)
                      ..|+++||+|....|..+.......              ......+++..+.-..     .-...+.|.+.|.....||.
T Consensus        15 k~WkkR~FvL~~~~L~Yy~~~~~~~--------------~~~~~~i~l~~~~~~~-----~~~~~~~F~i~~~~r~~~l~   75 (94)
T 2rsg_A           15 HGWQDRWVVLKNNALSYYKSEDETE--------------YGCRGSICLSKAVITP-----HDFDECRFDISVNDSVWYLR   75 (94)
T ss_dssp             TCEEEEEEEEETTEEEEESSTTGGG--------------TCCSEEEETTTCEEEE-----CSSCSSEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEECCEEEEEEeccccc--------------ccceeeEecceeeeec-----CcccceeEEEEeCCeEEEEE
Confidence            4699999999987776654332211              0012223333221111     11245678888655445899


Q ss_pred             ecChhhhhhHHHHHHHH
Q 010864          464 ADSWEALDGWLDAIRLV  480 (498)
Q Consensus       464 ~~~~~~~~~~~~a~~~~  480 (498)
                      |+|.++++.|++||..+
T Consensus        76 A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           76 AQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             CCSSCCTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999999865

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.84  E-value=0.0082  Score=51.84  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             hhhccccCCCCCCCC-CCchhhhhhhhccchh-----hhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccc
Q 010864          366 LKAGYLTAPPAGIPV-APHSDWKRSQFVLNHE-----GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA  439 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~-~~~~~w~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (498)
                      ...|||.-....... .....|+++||+|...     .|..+.....               .......|+|..+..+..
T Consensus        19 ~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~---------------~~~~~g~I~L~~~~~~~~   83 (150)
T 1wg7_A           19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI---------------SKEPKGSIFLDSCMGVVQ   83 (150)
T ss_dssp             CCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC---------------SSCCSEEECTTTCCEECC
T ss_pred             eEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCC---------------CCCcCcEEecccCEEEec
Confidence            456777653211100 1234799999999875     4444322110               012344566666554432


Q ss_pred             ccCCCCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHHHHHH
Q 010864          440 CADLTLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       440 ~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      .   .-...++|.|.|..+ ..||.|+|.++++.|+.||+-+..
T Consensus        84 ~---~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           84 N---NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             C---CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             C---CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            1   124668899987654 458999999999999999998754

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.78  E-value=0.0082  Score=50.82  Aligned_cols=92  Identities=14%  Similarity=0.133  Sum_probs=55.6

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-..      ....|+++||+|...-|..+-....                ......|+|....-++   ..+-
T Consensus         9 ~k~GwL~K~g------~~k~WkrRWfVLk~~~L~yyk~~~~----------------~~p~G~I~L~~~~v~~---~~~~   63 (130)
T 1v88_A            9 VMADWLKIRG------TLKSWTKLWCVLKPGVLLIYKTQKN----------------GQWVGTVLLNACEIIE---RPSK   63 (130)
T ss_dssp             CEEEEEEECC------SSSSCEEEEEEEETTEEEEESCSSS----------------CCCCEEEECSSCEECC---CCTT
T ss_pred             EEEeEEEEeC------CCCCceEEEEEEECCEEEEECCCCC----------------CCceEEEEcCCCEEEE---CCCC
Confidence            4567776521      2358999999998766655433222                1123345555332111   1222


Q ss_pred             CCCCeeeEeecCC-----------------------c-eeeeecChhhhhhHHHHHHHHHH
Q 010864          446 PPGAGLCIETIHG-----------------------P-VFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       446 p~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ..++.|.|.+...                       . .||.|+|.++++.|++||+.+..
T Consensus        64 ~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A           64 KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             TSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            3457777754221                       1 36899999999999999998763

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=95.72  E-value=0.0085  Score=50.53  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccc--cccccCCCCCCCCeeeEeec-CC-
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVS--VSACADLTLPPGAGLCIETI-HG-  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~-~~-  458 (498)
                      ...|+++||+|....|..+...+...             ...+...|+|..+..  +++..+-.....++|.|.|. ++ 
T Consensus        20 ~~~WkrRwfvL~~~~L~yyk~~~d~~-------------~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~   86 (134)
T 2y7b_A           20 FGAWHRRWCVLSGNCISYWTYPDDEK-------------RKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQR   86 (134)
T ss_dssp             EEEEEEEEEEEETTEEEEESSHHHHT-------------TSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECC
T ss_pred             CCCcEEEEEEEECCEEEEECCCCccc-------------ccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCc
Confidence            45899999999887766654332211             012244567766442  44433322335577777752 11 


Q ss_pred             ------------------ceeeeecChhhhhhHHHHHHHHHHH
Q 010864          459 ------------------PVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       459 ------------------~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                                        ..||.|+|.++++.|++||+-+..-
T Consensus        87 ~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           87 EDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             TTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                              2699999999999999999987543

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=95.72  E-value=0.0084  Score=50.39  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       446 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      ...+.|.|-|..+. .||.|+|.++++.|++||+-+..
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            46678888877754 59999999999999999987654

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=95.70  E-value=0.013  Score=48.73  Aligned_cols=91  Identities=9%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-
Q 010864          382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-  460 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-  460 (498)
                      ....|.++||+|....|..+.........      .+.  +-.....|+|... .++++.|. -.+.++|+|.|..+.+ 
T Consensus        28 ~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~------~~~--~~~~~~~i~L~~~-~v~~~~d~-~kr~~~F~l~t~~~~~~   97 (122)
T 1dro_A           28 SNRSWDKVYMAAKAGRISFYKDQKGYKSN------PEL--TFRGEPSYDLQNA-AIEIASDY-TKKKHVLRVKLANGALF   97 (122)
T ss_dssp             CCCCCEEEEEEESSSCCBEESSSSHHHHC------TTC--CSSCCCBCCCSSC-CCEECCSS-SSSTTEEEEECSSSCEE
T ss_pred             CCCCccEEEEEEECCEEEEEeCCcccccC------CCc--ccCCCceEECCCC-EEEeCCCC-CCCCeEEEEEEcCCCEE
Confidence            35689999999988776655443332210      000  0001123444321 23333332 2467899999877766 


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      +|.|+|.+++..|+.||.-+.+
T Consensus        98 lfqA~s~~e~~~Wi~ai~~~i~  119 (122)
T 1dro_A           98 LLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             EEECSSSHHHHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            6789999999999999997643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.65  E-value=0.053  Score=56.49  Aligned_cols=81  Identities=23%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      .++.+||.+...    ...+..|.       .+|.+|+.++|++...++.||.+....|+.          -+|+.+|-+
T Consensus       153 r~l~~LGDL~RY----~~~~~~A~-------~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~r  211 (497)
T 1ya0_A          153 HCLVHLGDIARY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCR  211 (497)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred             HHHHHcccHHHH----HHHHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHH
Confidence            355667776666    77776666       799999999999999999999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHc
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                      ++....-++.+..||...+...
T Consensus       212 sl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          212 SIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCChhHHHHHHHHHHHH
Confidence            9999888999999999988764

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.62  E-value=0.0097  Score=49.36  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-CC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-TL  445 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  445 (498)
                      +.|+|--.+...-.   ..|+++||+|-.+.-......|-....  -..+.|    ......|.|.|=++|.+...- +-
T Consensus        14 k~G~L~~q~q~~fg---kKWrk~w~vLy~~S~~GvaRLE~yd~~--ek~~r~----~~~rrVIrLsdCisV~~~~~e~~~   84 (127)
T 2d9w_A           14 KQGFLYLQQQQTFG---KKWRRFGASLYGGSDCALARLELQEGP--EKPRRC----EAARKVIRLSDCLRVAEAGGEASS   84 (127)
T ss_dssp             EEEEEEECBCSSSS---CBCCEEEEEEECCSSSSCCEEEEECCC--SCSSSC----SCCEEEECGGGEEEEEECCSCSSS
T ss_pred             cceEEEecccchhh---hhhheeEEEEecCCCCCceeeeeeecc--CccccC----CCCceEEEhhhCCeEecccCccCC
Confidence            45555544322222   259999999976544443333332210  000111    124678999999999998776 66


Q ss_pred             C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010864          446 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      | -.++|+|+|-...++|-|++ ..++.|..+|-.+
T Consensus        85 pk~~~aF~l~T~er~~~laAe~-~E~~~Wi~~ic~~  119 (127)
T 2d9w_A           85 PRDTSAFFLETKERLYLLAAPA-AERGDWVQAICLL  119 (127)
T ss_dssp             CSSCEEEEEEESSCEEEEEECH-HHHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCcEEEEEeCc-HHHHHHHHHHHHH
Confidence            7 56789999888766777775 5899999999765

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=95.53  E-value=0.0073  Score=53.31  Aligned_cols=84  Identities=11%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccc-cccccCCCCCCCCeeeEeecCCcee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVS-VSACADLTLPPGAGLCIETIHGPVF  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~  461 (498)
                      ...|.++||+|....|..+.......              ......|+|..+.+ ++.. .......++|.|.|.....|
T Consensus        26 ~k~WkkRwfvL~~~~L~yyk~~~~~~--------------~~~~g~i~l~~~~~~~~~~-~~~~~~~~~F~I~t~~r~~~   90 (168)
T 2j59_M           26 IRPWKQMYVVLRGHSLYLYKDKREQT--------------TPSEEEQPISVNACLIDIS-YSETKRKNVFRLTTSDCECL   90 (168)
T ss_dssp             --CCEEEEEEEETTEEEEESCTTCC----------------------CEECSSCEEEEC-SSSCSCSSEEEEECSSCEEE
T ss_pred             CCCceEEEEEEeCCEEEEEECCcccc--------------cccCCceEecccceEEEec-cccCCCCCEEEEEeCCceEE
Confidence            45799999999887666544322100              00112233333211 1111 11123567899987766568


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      |.|+|.++++.|++||+-+.
T Consensus        91 l~A~s~~e~~~Wi~ai~~~~  110 (168)
T 2j59_M           91 FQAEDRDDMLAWIKTIQESS  110 (168)
T ss_dssp             EECSSHHHHHHHHHHHHHHC
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            99999999999999998664

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=95.52  E-value=0.0059  Score=58.36  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchh-------hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccc
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-------GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVS  438 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (498)
                      ...|||.-.         ..|+++||+|...       .|..+........        +   .......|+|.++.++.
T Consensus        11 ~k~G~L~K~---------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~--------~---~~~p~g~I~L~~~~~V~   70 (264)
T 1qqg_A           11 RKVGYLRKP---------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRH--------K---SSAPKRSIPLESCFNIN   70 (264)
T ss_dssp             EEEEEEECT---------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHT--------T---CSCCSEEEEGGGEEEEE
T ss_pred             cEEEEEEEC---------CCCEeEEEEEECCCCCCCCCEEEEECCCccccc--------c---ccCcceEEEeeceEEEE
Confidence            346777643         5899999999876       4444332221110        0   01235568888887776


Q ss_pred             cccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHH
Q 010864          439 ACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       439 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      +..+  -...++|.|.|.....||.|+|.++++.|++||..+..=.
T Consensus        71 ~~~~--~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           71 KRAD--SKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             EECC--SSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             eccC--CCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            6544  2356789998876667999999999999999999875543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.47  E-value=0.14  Score=51.62  Aligned_cols=95  Identities=9%  Similarity=-0.006  Sum_probs=79.4

Q ss_pred             hccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPED----------------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK  194 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~----------------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~  194 (498)
                      .|+.+.|+..+.+|+.+-...                      ..+...++..+...|+              +.+|+..
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~--------------~~~a~~~  193 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR--------------ASAVIAE  193 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHH
Confidence            467778888888888764211                      1244566777888888              9999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       195 ~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      +.+++..+|-+-.+|..|-.+|..    .|+..+|+..|++....+.+-+.++|.
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~----~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999    999999999999998888888888885

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=95.44  E-value=0.0074  Score=50.54  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=54.3

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC---c
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG---P  459 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~  459 (498)
                      ...|+++||+|....|..+.........   ....|    ......|+|.... ++.+.+-....-++|.|.+...   .
T Consensus        25 ~k~Wk~RwfVL~~~~L~yyk~~~~~~~e---~~plg----~~~~G~I~L~~~~-v~~~~~~~~~k~~~F~I~~~~~~~~~   96 (124)
T 2w2x_D           25 DQKWTRHFCAIADAKLSFSDDIEQTMEE---DNPLG----SLCRGILDLNTYN-VVKAPQGKNQKSFVFILEPKQQGDPP   96 (124)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEHHHHHHC---SSCCC----CSCSEEEEGGGEE-EEECTTCBTTBSEEEEEEECC--CCC
T ss_pred             CCCceEeEEEEECCEEEEEccccccccc---ccccC----CccccEEECCCCE-EEEccCCcCCCCEEEEEECCCCCCce
Confidence            3579999999988777665543321100   00011    1124456666443 3333332223446888876443   3


Q ss_pred             eeeeecChhhhhhHHHHHHHHH
Q 010864          460 VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       460 ~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .||.|+|.++++.|+.||+-+.
T Consensus        97 ~~~~A~s~ee~~~Wi~ai~~a~  118 (124)
T 2w2x_D           97 VEFATDKVEELFEWFQSIREIT  118 (124)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHHH
Confidence            5799999999999999999653

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.36  E-value=0.0077  Score=48.79  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-.       ....|+++||+|....|..+......               ......|++... .+++..+  -
T Consensus         9 ~~~G~L~K~-------~~k~Wk~RwfvL~~~~L~yyk~~~~~---------------~~~~~~i~l~~~-~v~~~~~--~   63 (107)
T 2cof_A            9 ETSSYLNVL-------VNSQWKSRWCSVRDNHLHFYQDRNRS---------------KVAQQPLSLVGC-EVVPDPS--P   63 (107)
T ss_dssp             TTCCEEEEE-------ETTEEEEEEEEECSSCEEEECSSTTC---------------SEEEEEECTTTC-EEECCCB--T
T ss_pred             cEeEEEEEe-------cCCCcceEEEEEECCEEEEEeCCccc---------------CCCeeEEeccce-EEEECCC--C
Confidence            346666542       24589999999987766543322110               011223333221 1333222  1


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ...++|.|.|..+. .||.|+|.++++.|++||+-+
T Consensus        64 ~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~   99 (107)
T 2cof_A           64 DHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   99 (107)
T ss_dssp             TBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            25578888875344 599999999999999999854

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=95.34  E-value=0.017  Score=48.74  Aligned_cols=93  Identities=22%  Similarity=0.275  Sum_probs=55.8

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|.++||+|....|..+-.......+..    .+. ....+...|+|.... ++...|-+ ...++|.|.|..+.. ||
T Consensus        32 k~Wk~rwfvL~~~~L~yykd~~~~~~~~~----~~~-~~~~p~g~I~L~~~~-v~~~~~~~-kr~~~F~l~t~~~~~yl~  104 (129)
T 2p0d_A           32 KNWGPSWVVLTGNSLVFYREPPPTAPSSG----WGP-AGSRPESSVDLRGAA-LAHGRHLS-SRRNVLHIRTIPGHEFLL  104 (129)
T ss_dssp             CCCEEEEEEEESSEEEEESCC-------------------CCSEEEECTTCE-EEECTTSC-SSSSEEEEECTTSCEEEE
T ss_pred             CCceEEEEEEeCCEEEEEcCccccccccc----ccc-cCCCCccEEEeCCcE-EEECCCCC-CCCcEEEEEcCCCCEEEE
Confidence            68999999998877765443322110000    000 011234466666433 22222222 356899999888865 67


Q ss_pred             eecChhhhhhHHHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~~~  483 (498)
                      .|+|.++++.|+.||.-+..-
T Consensus       105 qA~s~~e~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A          105 QSDHETELRAWHRALRTVIER  125 (129)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999977553

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=95.32  E-value=0.012  Score=47.17  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCc-eee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGP-VFL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~  462 (498)
                      ..|+++||+|....|..+.......              ......|+|. ..++.+..+    .++.|.|.|..+. .||
T Consensus        13 k~Wk~R~fvL~~~~L~Yy~~~~~~~--------------~~~~g~i~L~-~~~v~~~~~----~~~~F~i~~~~~r~~~l   73 (103)
T 3rcp_A           13 TGWQPRWFVLDNGILSYYDSQDDVC--------------KGSKGSIKMA-VCEIKVHSA----DNTRMELIIPGEQHFYM   73 (103)
T ss_dssp             TCEEEEEEEEETTEEEEESSCC-----------------CCCSCEEEGG-GCEEECCTT----CSSEEEEEETTTEEEEE
T ss_pred             CCeeceEEEEECCEEEEEecCCccc--------------CCcccEEEee-eeEEEEcCC----CCceEEEEeCCCCEEEE
Confidence            4799999999976666544332210              0112344443 233322211    3567888764344 488


Q ss_pred             eecChhhhhhHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~  481 (498)
                      .|+|.++++.|+.||+.+.
T Consensus        74 ~a~s~~e~~~Wi~al~~a~   92 (103)
T 3rcp_A           74 KAVNAAERQRWLVALGSSK   92 (103)
T ss_dssp             ECSSHHHHHHHHHHHHTTS
T ss_pred             ECCCHHHHHHHHHHHHHHH
Confidence            9999999999999998653

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=95.31  E-value=0.013  Score=48.78  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC----
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG----  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----  458 (498)
                      ...|+++||+|....|..+.....                ......|+|.++. +..+.+.  ...++|.|.+..+    
T Consensus        18 ~~~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~-v~~~~~~--~~~~~f~i~~~~~~~~~   78 (127)
T 1fgy_A           18 VKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENLS-IREVLDP--RKPNCFELYNPSHKGQV   78 (127)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEEECCS--SCSSEEEEECSSSTTCC
T ss_pred             CCCeEEEEEEEECCEEEEeCCCCC----------------CCcceEEECCceE-EEEccCC--CCCceEEEecCCccccc
Confidence            357999999998776665443221                1123345666542 2222221  2345565554332    


Q ss_pred             ------------------ceeeeecChhhhhhHHHHHHHHH
Q 010864          459 ------------------PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       459 ------------------~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                                        ..||.|+|.++++.|++||+-+.
T Consensus        79 ~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i  119 (127)
T 1fgy_A           79 IKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI  119 (127)
T ss_dssp             CCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence                              24889999999999999998653

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=95.30  E-value=0.011  Score=54.50  Aligned_cols=82  Identities=7%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccccc-CCCCCCCCeeeEeecCCce-e
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ..|+++||+|....|..+.....                ......|+|..+..+.... ...-...++|.|.|..+.+ |
T Consensus       124 k~WkkRwfVL~~~~L~Yyk~~~~----------------~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~  187 (211)
T 1u5e_A          124 FEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQ  187 (211)
T ss_dssp             CCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEE
T ss_pred             CCcEeEEEEEECCEEEEEcCCCC----------------ccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEE
Confidence            47999999998766655433221                1124456776666554221 1111245788888765454 7


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      |.|+|.++++.|++||+.+.
T Consensus       188 l~A~s~~e~~~Wi~aL~~ai  207 (211)
T 1u5e_A          188 FTAASPKDAEEWVQQLKFIL  207 (211)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            89999999999999998764

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=95.30  E-value=0.013  Score=48.00  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccccc-CCCCCCCCeeeEeecCCc-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DLTLPPGAGLCIETIHGP-V  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~-~  460 (498)
                      ...|.++||+|....|..+......                .....|+|.... +..|. ...-.+-++|.|.+..+. .
T Consensus        17 ~k~Wk~rwfvL~~~~L~~yk~~~~~----------------~p~~~i~l~~~~-~~~~~~~~~~~r~~~F~l~~~~~~~y   79 (112)
T 3cxb_B           17 KEHWKTCFVVLSNGILYQYPDRTDV----------------IPLLSVNMGGEQ-CGGCRRANTTDRPHAFQVILSDRPCL   79 (112)
T ss_dssp             CCCCEEEEEEEETTEEEEESSSSCC----------------SCSEEEETTC-C-EEEEEECCCSSCTTEEEEEETTSCCE
T ss_pred             CCCceEEEEEEECCEEEEECCCCCC----------------CccceEEecCCE-EEeeeccCCCCCCeEEEEEcCCCCEE
Confidence            4689999999987665544332211                112234444221 11111 112346689999876665 4


Q ss_pred             eeeecChhhhhhHHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      +|.|+|.++++.|+.||+.+..
T Consensus        80 ~f~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           80 ELSAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCHHHHHHHHHHHHHHhh
Confidence            8899999999999999986643

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.30  E-value=0.019  Score=48.06  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhc----ccchhhccccccCCCCCCCCCCccccccCCcc--ccccc
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQAS----KNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDI--VSVSA  439 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  439 (498)
                      ...|||.....    .....|+++||||....|....    ....                ..+.-.|+|+..  ..+++
T Consensus         9 ~~~G~L~KqG~----~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~----------------~~p~G~I~L~g~tV~~~~~   68 (126)
T 1wi1_A            9 KHSGYLWAIGK----NVWKRWKKRFFVLVQVSQYTFAMCSYREKK----------------AEPQELLQLDGYTVDYTDP   68 (126)
T ss_dssp             EEEEEEEEECS----SSCCSCEEEEEEEEEEETTEEEEEECCSSS----------------SCCSEEEECSSCEEEECCC
T ss_pred             ceeEEEEEeCC----CcccccceEEEEEeCCEEEEEEcccccccC----------------CCCceEEECCCcEEEEecC
Confidence            45677764311    1225899999999987776643    1111                112334566642  12223


Q ss_pred             ccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          440 CADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       440 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ..+. ...-++|.+.+..-..||-|||.++++.|+.||.-+.
T Consensus        69 ~~~~-~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~  109 (126)
T 1wi1_A           69 QPGL-EGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRAT  109 (126)
T ss_dssp             CSSC-CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             Cccc-ccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHh
Confidence            2222 3456778766433335888899999999999998653

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=95.29  E-value=0.0072  Score=58.34  Aligned_cols=82  Identities=20%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccc--c----cCCCCCCCCeeeEeecC
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA--C----ADLTLPPGAGLCIETIH  457 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~p~~~~~~~~~~~  457 (498)
                      ..|+++||+|....|..+.......                ....|++.++..+..  .    .....|..++|+|.+..
T Consensus       182 k~WkkR~fvL~~~~L~yyk~~~~~~----------------~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~  245 (291)
T 3tca_A          182 KSWKRRYFLLRASGIYYVPKGKTKT----------------SRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQ  245 (291)
T ss_dssp             SCEEEEEEEECSSEEEECCTTCCSS----------------TTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTT
T ss_pred             CCceEEEEEEeCCEEEEEecCcccc----------------ccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCC
Confidence            4799999999887776543322211                111223322222111  1    11355677899997543


Q ss_pred             C------ceeeeecChhhhhhHHHHHHHHH
Q 010864          458 G------PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       458 ~------~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .      -.||.|+|.++++.|+.||+++-
T Consensus       246 ~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          246 IQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             CCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            2      15899999999999999999874

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=95.18  E-value=0.013  Score=50.40  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC--C
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL--T  444 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  444 (498)
                      ..|||.-...... .....|+++||+|....|..+.....                ......|+|..+. +..+.+.  .
T Consensus        19 ~~G~L~K~g~~~~-~~~k~WkkR~fvL~~~~L~yyk~~~~----------------~~~~g~i~L~~~~-v~~~~~~~~~   80 (148)
T 1u5f_A           19 KAGYLEKRRKDHS-FLGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYD-VRMNNTLRKD   80 (148)
T ss_dssp             EEEEEEEECCCSS-CSSCSEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEECTTSCSS
T ss_pred             EEEEEEEeCCCCC-CcCCCceeEEEEEECCEEEEEcCCCC----------------cccceEEEcCCcE-EEECCCcccC
Confidence            4677764321111 01258999999998766655432211                1123456666553 3222221  1


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHH
Q 010864          445 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       445 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      -...++|.|.|..+. .||.|+|.++++.|++||+.+..
T Consensus        81 ~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  119 (148)
T 1u5f_A           81 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ  119 (148)
T ss_dssp             TTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            123478999876654 47899999999999999998754

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.10  E-value=0.02  Score=47.58  Aligned_cols=88  Identities=13%  Similarity=0.168  Sum_probs=53.7

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ...|+++||+|....|..+........        |....  ....|++.. ..++.+.+ .-...++|.|.|..|.+ +
T Consensus        29 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~--------~~~~~--~~~~i~l~~-~~~~~~~~-~~~r~~~F~i~~~~~~~~~   96 (123)
T 1wjm_A           29 NRSWQNVYCVLRRGSLGFYKDAKAASA--------GVPYH--GEVPVSLAR-AQGSVAFD-YRKRKHVFKLGLQDGKEYL   96 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTT--------TCBSS--SCCCEECTT-CEEEECTT-CSSCSSEEEEECSSSCEEE
T ss_pred             CCCccEEEEEEECCEEEEEEccccccc--------CcccC--CCceEEccC-cEEeeccc-ccCCCCEEEEEEcCCcEEE
Confidence            458999999998877765543332210        00000  112233321 11222222 12367899999887755 7


Q ss_pred             eeecChhhhhhHHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      |.|+|.+++..|++||..+..
T Consensus        97 f~A~s~~e~~~Wi~ai~~~~~  117 (123)
T 1wjm_A           97 FQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHh
Confidence            899999999999999997654

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=95.08  E-value=0.0094  Score=55.64  Aligned_cols=79  Identities=20%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV  463 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  463 (498)
                      ..|+++||+|....|..+.....                ......|+|..+..+....    ...++|.|.|.....||.
T Consensus        77 k~WkkRwfvL~~~~L~Yyk~~~~----------------~~~~g~I~L~~~~~v~~~~----~k~~~F~I~t~~r~~~l~  136 (228)
T 3tfm_A           77 RNWKKRWFVLRQSKLMYFENDSE----------------EKLKGTVEVRSAKEIIDNT----NKENGIDIIMADRTFHLI  136 (228)
T ss_dssp             GGCEEEEEEECSSEEEEESSTTC----------------CSEEEEEEGGGCSEEEEET----TTTSEEEEECSSCEEEEE
T ss_pred             CCceEEEEEEeCCEEEEEeCCCC----------------cceeEEEEcCCCEEeccCC----CCCcEEEEEcCCcEEEEE
Confidence            78999999998766655432211                1234467777666554322    356789998765556999


Q ss_pred             ecChhhhhhHHHHHHHHHH
Q 010864          464 ADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       464 ~~~~~~~~~~~~a~~~~~~  482 (498)
                      |+|.++++.|++||+-+..
T Consensus       137 A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          137 AESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             CSSHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHh
Confidence            9999999999999997764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.03  E-value=0.12  Score=53.70  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  239 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~  239 (498)
                      .+..+|.+......              +..|..+|.+|+.++|++...|+.||.+...    .|+.-+|+       -+
T Consensus       154 ~l~~LGDL~RY~~~--------------~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~-------y~  208 (497)
T 1ya0_A          154 CLVHLGDIARYRNQ--------------TSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTI-------FY  208 (497)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             HHHHcccHHHHHHH--------------HHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHH-------HH
Confidence            45677888888877              9999999999999999999999999999999    99998888       68


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          240 YEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       240 ~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      |-+++....-++.+..||..++.+.
T Consensus       209 y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          209 YCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChhHHHHHHHHHHHH
Confidence            8888877766889999998888763

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.98  E-value=0.018  Score=47.10  Aligned_cols=92  Identities=13%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.--...    ....|+++||+|....|..+......                 ....|.+... .+.+..+   
T Consensus        11 ~~~G~L~K~~~~----~~k~WkkR~fvL~~~~L~yyk~~~~~-----------------~~~~i~l~~~-~v~~~~~---   65 (114)
T 2da0_A           11 EKKGYLLKKSDG----IRKVWQRRKCSVKNGILTISHATSNR-----------------QPAKLNLLTC-QVKPNAE---   65 (114)
T ss_dssp             CEEEEEEEECSS----SCCCEEEEEEEEETTEEEECCSSCCS-----------------CCEEEETTTS-EEEECSS---
T ss_pred             cEEEEEEEeCCC----CCCCceeEEEEEeCCEEEEEcCCCCC-----------------CCCEEEeeee-EEEECCC---
Confidence            346776643211    12589999999977666554331110                 1111121111 0111111   


Q ss_pred             CCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHH
Q 010864          446 PPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       446 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                       ..++|.|.|.....||.|+|.++++.|++||+-+..-
T Consensus        66 -~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  102 (114)
T 2da0_A           66 -DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEE  102 (114)
T ss_dssp             -SSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence             3468888875545699999999999999999976543

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=94.83  E-value=0.023  Score=45.53  Aligned_cols=85  Identities=13%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ...|.++||+|....|..+........        +..  ......|++.... ++...+ .-...++|.|.|..+.+ |
T Consensus        20 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~--------~~~--~~~~~~i~l~~~~-~~~~~~-~~~~~~~F~i~~~~~~~~~   87 (106)
T 1btn_A           20 SRSWHNVYCVINNQEMGFYKDAKSAAS--------GIP--YHSEVPVSLKEAI-CEVALD-YKKKKHVFKLRLSDGNEYL   87 (106)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHHH--------TCC--SSSCCCEECTTCE-EEECSS-CCSSSSEEEEECTTSCEEE
T ss_pred             CCChhEEEEEEECCEEEEEeCCccccc--------CCC--CCCcceEECCCCE-EEEccc-ccCCccEEEEEecCCCEEE
Confidence            457999999998776665543332110        000  0012223332211 111111 12356789998877554 8


Q ss_pred             eeecChhhhhhHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRL  479 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~  479 (498)
                      |.|+|.+++..|++||+-
T Consensus        88 ~~A~s~~e~~~Wi~ai~~  105 (106)
T 1btn_A           88 FQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             EECSSHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHhc
Confidence            899999999999999973

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=94.82  E-value=0.022  Score=47.38  Aligned_cols=86  Identities=13%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC------CCCCCeeeEeec
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT------LPPGAGLCIETI  456 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~  456 (498)
                      ...|.++||||...-|..+-..+...             ...+...|+|.+-.-..++.+-+      .+.++.|.|.+.
T Consensus        19 ~k~W~~rwfVL~~~~L~yyK~~~~~~-------------d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~   85 (120)
T 4a6h_A           19 LKSYSKGYYVLTPNFLHEFKTADRKK-------------DLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAK   85 (120)
T ss_dssp             TTEEEEEEEEECSSEEEEESSCCTTT-------------CCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEES
T ss_pred             CCCCccEEEEEeCCEEEEEcCCCcCc-------------CCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeC
Confidence            34799999999887555443322210             01123456665433222222211      246778888765


Q ss_pred             CC-------ceeeeecChhhhhhHHHHHHHHH
Q 010864          457 HG-------PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       457 ~~-------~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ..       ..+|.|+|.++++.|++||+-+-
T Consensus        86 ~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           86 QNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             SSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            52       35999999999999999999763

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.79  E-value=0.053  Score=44.99  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=58.5

Q ss_pred             hhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-CCC---CeeeEeecCCce
Q 010864          385 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPG---AGLCIETIHGPV  460 (498)
Q Consensus       385 ~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~---~~~~~~~~~~~~  460 (498)
                      .|+|....||...+.-... +.               ...--..|||.+|.+|+++.++++ |++   +.|.+.| +.-+
T Consensus        23 ~rKRHYWrLD~K~Itlf~~-e~---------------~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~   85 (129)
T 2d9z_A           23 LRKRHYWRLDSKCLTLFQN-ES---------------GSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMV   85 (129)
T ss_dssp             CCEEEEEEEESSCEEEESC-SS---------------CCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCE
T ss_pred             cccceeeEecCCeEEEEec-CC---------------CCceeceeeHHHhcccccccCccccCCCCCCceEEEEE-CCEE
Confidence            4777778888766554322 11               012244699999999999999876 544   8899997 6778


Q ss_pred             eeeecC----------------hhhhhhHHHHHHHHH
Q 010864          461 FLVADS----------------WEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~~~~~~----------------~~~~~~~~~a~~~~~  481 (498)
                      |+|.++                .+.+..|-.||+.+.
T Consensus        86 y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL  122 (129)
T 2d9z_A           86 YFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL  122 (129)
T ss_dssp             EEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence            999873                477888999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.49  E-value=0.9  Score=42.93  Aligned_cols=119  Identities=12%  Similarity=-0.022  Sum_probs=86.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +.+.|.+++|+......++.+|.|+.....+-.++.-.|+              +++|.+-++.+.+++|.....-..+-
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~--------------w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            4567999999999999999999999999999999999999              99999999999999999765433322


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---hcCC------CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAV---QLNW------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al---~l~P------~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      .+...                   +.++..+   +..|      ........-+......|+.          ++|...-
T Consensus        73 ~lI~a-------------------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~----------~~A~~lr  123 (273)
T 1zbp_A           73 HLVKA-------------------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELA  123 (273)
T ss_dssp             HHHHH-------------------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHH
T ss_pred             HHHHH-------------------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH----------HHHHHHH
Confidence            22211                   1333333   1112      1222333444555566888          9999999


Q ss_pred             HHHHHhcCCCH
Q 010864          285 RAAIQLQFDFH  295 (498)
Q Consensus       285 ~~Al~l~P~~~  295 (498)
                      .+|++..|..+
T Consensus       124 ~~A~e~ap~~~  134 (273)
T 1zbp_A          124 LQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHCCCCC
T ss_pred             HHHHhcCcccC
Confidence            99999987754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.26  E-value=0.39  Score=52.39  Aligned_cols=89  Identities=15%  Similarity=-0.015  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhc
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~--l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +++|.+..+     .-++...|.++|..+.+    .|+++.|+.+|.++ ..|..+..  ....+...+..++......|
T Consensus       668 ~~~A~~~~~-----~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          668 LTLARDLLT-----DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA-HDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHHHT-----TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH-TCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-----hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc-cChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            888877643     34677899999999999    99999999877654 22333222  22557777778888888888


Q ss_pred             CcchH---HhhhhhHHHHHHHHHH
Q 010864          266 AIVPA---REKQTIVRTAISKFRA  286 (498)
Q Consensus       266 ~~~~a---~~~~~~~~~Ai~~~~~  286 (498)
                      ++..|   +.+.|++++|++.|.+
T Consensus       738 ~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          738 KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCHHHHHHHHHH
Confidence            88443   2334555555555443

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=94.17  E-value=0.043  Score=45.03  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             chhhhhhhhccchhh---hhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCC
Q 010864          383 HSDWKRSQFVLNHEG---LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHG  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~  458 (498)
                      ...|+++||+|....   |..+.....                ..+...|||... .|..+....-+ ..++|.|- ..+
T Consensus        20 ~~~WkkrWfVL~~~~~~~Ly~Yk~~~d----------------~~p~g~I~L~g~-~V~~~~~~~~~~~~~~Fki~-~~~   81 (112)
T 2coc_A           20 GETWSEVWAAIPMSDPQVLHLQGGSQD----------------GRLPRTIPLPSC-KLSVPDPEERLDSGHVWKLQ-WAK   81 (112)
T ss_dssp             SSCEEEEEEECCTTCTTCEEEECCTTC----------------SSSCSEECGGGC-EEECCCSSSCCSSSEEEEEE-ETT
T ss_pred             CCCceEEEEEEECCCccEEEEECCCCc----------------cCcceEEEcCCC-EEEecCcccccCCCCEEEEe-cCC
Confidence            457999999997632   332221111                123445666543 22221111122 56788877 334


Q ss_pred             ce-eeeecChhhhhhHHHHHHHHH
Q 010864          459 PV-FLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       459 ~~-~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      -+ ||.|+|.++++.|+.+|..+.
T Consensus        82 ~~y~f~A~s~e~~~~Wl~al~~A~  105 (112)
T 2coc_A           82 QSWYLSASSAELQQQWLETLSTAA  105 (112)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHHh
Confidence            34 999999999999999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.08  E-value=0.6  Score=50.85  Aligned_cols=121  Identities=12%  Similarity=-0.044  Sum_probs=73.3

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH--------hCCCCHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLHD  207 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~--------l~p~~~~  207 (498)
                      ..|++++|.+..+     ..++...|..+|..+...++              ++.|+.+|.++-.        ...++.+
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~--------------~~~A~~~y~~~~d~~~l~~l~~~~~~~~  724 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN--------------FKLAIEAFTNAHDLESLFLLHSSFNNKE  724 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC--------------HHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence            4566666666543     34788999999999999999              9999999998721        1233344


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA---REKQTIVRTAISKF  284 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~  284 (498)
                      .+..++.....    .|++..|..                            ++.+.|++++|   +.+.+++++|+..-
T Consensus       725 ~~~~~~~~a~~----~~~~~~A~~----------------------------~~~~~g~~~~a~~~~~~~~~~~~A~~lA  772 (814)
T 3mkq_A          725 GLVTLAKDAET----TGKFNLAFN----------------------------AYWIAGDIQGAKDLLIKSQRFSEAAFLG  772 (814)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHH----------------------------HHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCchHHHHH----------------------------HHHHcCCHHHHHHHHHHcCChHHHHHHH
Confidence            44444444444    555555553                            23334444433   33344448887765


Q ss_pred             HHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010864          285 RAAIQLQFDF---HRAIYNLGTVLYGLAE  310 (498)
Q Consensus       285 ~~Al~l~P~~---~~a~~~Lg~~~~~~g~  310 (498)
                      ++   ..|..   ..+....+.-+...|+
T Consensus       773 ~~---~~~~~~~i~~~~~~~~~~L~~~~~  798 (814)
T 3mkq_A          773 ST---YGLGDNEVNDIVTKWKENLILNGK  798 (814)
T ss_dssp             HH---TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HH---hCCChHHHHHHHHHHHHHHHhccc
Confidence            53   45443   3555556666666664

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=94.03  E-value=0.017  Score=48.06  Aligned_cols=96  Identities=15%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchh-hhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccc-ccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHE-GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA-CADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  443 (498)
                      ...|||.--.     .....|+++||+|... .|..+......                .....|||..+.-+.. +...
T Consensus         9 ~~~G~L~K~g-----~~~k~WkkRwfvL~~~~~L~yy~~~~~~----------------~~~g~i~L~~~~~~~~~~~~~   67 (125)
T 1unq_A            9 VKEGWLHKRG-----EYIKTWRPRYFLLKNDGTFIGYKERPQD----------------VDQREAPLNNFSVAQCQLMKT   67 (125)
T ss_dssp             EEEEEEEEEC-----SSSCCEEEEEEEEETTSEEEEESSCCCS----------------HHHHTSCSEEEECTTCEEEEE
T ss_pred             eEEeeEEecc-----CCccCccCcEEEEecCCEEEEEeCCCCC----------------CCCceeEccceeEEeeeeccc
Confidence            3467776421     1245799999999843 44433221110                1123345554432211 0001


Q ss_pred             CCCCCCeeeEeec---CC-ceeeeecChhhhhhHHHHHHHHHH
Q 010864          444 TLPPGAGLCIETI---HG-PVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       444 ~~p~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      .-...++|.|.+.   .+ ..||.|+|.++++.|++||+-+..
T Consensus        68 ~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           68 ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             CSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            1245678888753   22 248999999999999999997754

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=93.77  E-value=0.056  Score=54.52  Aligned_cols=99  Identities=13%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             chhhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccc---c
Q 010864          363 LPYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVS---A  439 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  439 (498)
                      ...+..|||.-....    ....|+++||+|....|..+......                .....|+|..+..+-   .
T Consensus       267 ~~~~k~G~L~K~g~~----~~k~WKkRwFVL~~~~L~YYk~~~d~----------------~~~G~I~L~~~~~~~~v~~  326 (386)
T 3lju_X          267 RNYLKEGYMEKTGPK----QTEGFRKRWFTMDDRRLMYFKDPLDA----------------FARGEVFIGSKESGYTVLH  326 (386)
T ss_dssp             CCCSEEEEEEECCTT----SCSCCEEEEEEEETTEEEEESSTTCS----------------BCSEEEECCCGGGTCEEEE
T ss_pred             cccceeeeEEEECCC----CCCCCcccEEEEECCEEEEEecCCCc----------------ccceEEEeecceeeeeecc
Confidence            334568888754211    12589999999997777665432221                123456665554432   2


Q ss_pred             ccCCCCC---CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          440 CADLTLP---PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       440 ~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      +...+..   ..++|.|.|..-..||.|+|.++++.|++||+-|.
T Consensus       327 ~~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i  371 (386)
T 3lju_X          327 GFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV  371 (386)
T ss_dssp             SCCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            1212221   14788888765556999999999999999999764

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=93.71  E-value=0.06  Score=51.27  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|+++||+|....|..+-......          ......+...|+|..- .+..+.+-+ -..++|.|.|..+.+ +|
T Consensus        37 K~WkrRWfVL~~~~L~yyK~~~~~~----------~~~~~~p~g~I~L~~~-~v~~~~~~~-kk~~~F~I~t~~~r~y~f  104 (263)
T 3a8p_A           37 RKWKQYWVTLKGCTLLFYETYGKNS----------TEQNSAPRCALFAEDS-IVQSVPEHP-KKEHVFCLSNSCGDVYLF  104 (263)
T ss_dssp             CCCEEEEEEEETTEEEEESSCCC----------------CCCSEEEECTTC-EEEECTTCS-SCSSEEEEECTTSCEEEE
T ss_pred             CCceEEEEEEcCCEEEEEecCcccc----------cccccCccceEEcCCc-EEEECCcCC-CCCCEEEEEcCCCcEEEE
Confidence            4899999999887666544321100          0000112334666422 222222221 257899999866655 78


Q ss_pred             eecChhhhhhHHHHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      .|+|.++++.|++||.-+....
T Consensus       105 ~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A          105 QATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999876544

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=93.57  E-value=0.067  Score=44.25  Aligned_cols=81  Identities=27%  Similarity=0.436  Sum_probs=57.9

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-CCC---CeeeEeecCCc
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPG---AGLCIETIHGP  459 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~---~~~~~~~~~~~  459 (498)
                      ..|+|..+.||...+.-......                ...-..|||.+|.+|++|.+.++ |++   +.|.+.| +.-
T Consensus        22 ~~rKRHYWrLD~K~Itlf~~e~~----------------~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~   84 (125)
T 2coa_A           22 TLRKRHYWRLDCKCITLFQNNTT----------------NRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANA   84 (125)
T ss_dssp             CCCEEEEEEECSSEEEEESSSSC----------------SSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSC
T ss_pred             ccccceeeEecCCeEEEEecCCC----------------CceeeeeehhHeecccccccccccCCCCCCceEEEEe-CCe
Confidence            36788888888766654322111                12344699999999999999886 544   7888887 566


Q ss_pred             eeeeecC------h------hhhhhHHHHHHHHH
Q 010864          460 VFLVADS------W------EALDGWLDAIRLVY  481 (498)
Q Consensus       460 ~~~~~~~------~------~~~~~~~~a~~~~~  481 (498)
                      +|+|..+      .      +.+..|-.||+.+.
T Consensus        85 ~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL  118 (125)
T 2coa_A           85 TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  118 (125)
T ss_dssp             CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence            8989874      2      44888999999763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.44  E-value=0.86  Score=45.71  Aligned_cols=81  Identities=16%  Similarity=-0.013  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010864          188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ  245 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~----------------------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~  245 (498)
                      .+.|...+.+|+.+-...                      ..+...++.++..    .|++.+++       ..+++++.
T Consensus       131 ~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~----~g~~~~a~-------~~l~~~~~  199 (388)
T 2ff4_A          131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA----CGRASAVI-------AELEALTF  199 (388)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence            777777777777762210                      1223334444555    88888888       68899999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864          246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ  289 (498)
Q Consensus       246 l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~  289 (498)
                      .+|-+..++..+-.+|...|+.          .+|+..|+++-+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~----------~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence            9999999999999999999999          999999988754

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=93.34  E-value=3.5  Score=41.46  Aligned_cols=78  Identities=21%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCc--e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGP--V  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~  460 (498)
                      ...|.++||+|....+..+.....                 .....++|.. .+|.++.+  ..+.|+|.|-|..+.  .
T Consensus       317 ~~~W~rrwfvl~~~~l~y~~~~~~-----------------~~~~~~~l~~-~~v~~~~~--~~r~~cF~i~~~~~~~~~  376 (407)
T 4h8s_A          317 TTTWERLYFFTQGGNLMCQPRGAV-----------------AGGLIQDLDN-CSVMAVDC--EDRRYCFQITTPNGKSGI  376 (407)
T ss_dssp             CEEEEEEEEEECSSCEECCCTTCS-----------------SCCCCBCSSC-CEEEEECC--TTCSSEEEEECTTSSCCE
T ss_pred             CCCceEEEEEEECCEEEEEeCCCC-----------------CCCeEEECCc-eEEEECCC--CCCCceEEEEecCCCceE
Confidence            357999999998876665432111                 0112233321 12333222  236688888876653  5


Q ss_pred             eeeecChhhhhhHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ||-|+|.++++.|+.||.-+
T Consensus       377 ~l~A~s~~e~~~Wi~ai~~a  396 (407)
T 4h8s_A          377 ILQAESRKENEEWICAINNI  396 (407)
T ss_dssp             EEECSSSHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHH
Confidence            88999999999999999865

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=93.21  E-value=0.071  Score=44.43  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCC---CCccccccCCccccccccc-CCCCCCCCeeeEeecCCc
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSP---DRRAIRIEVPDIVSVSACA-DLTLPPGAGLCIETIHGP  459 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~  459 (498)
                      ..|.++||+|....|.-+.......       ..|.-.+   ......|+|.. ..++... |.+ -+-++|.|.|..|.
T Consensus        29 r~W~~~w~VL~~~~L~~yKd~~~~~-------~~~~~~~~~~~~~~~~i~L~~-a~v~~~~~d~~-krk~vF~l~t~~~~   99 (124)
T 3pp2_A           29 KHWSASWTVLEGGVLTFFKDSKTSA-------AGGLRQPSKFSTPEYTVELRG-ATLSWAPKDKS-SRKNVLELRSRDGS   99 (124)
T ss_dssp             CCCEEEEEEEETTEEEEESCSBCC----------CBCCGGGGCSEEEEEECTT-CEEEECCGGGC-SSSSEEEEECTTSC
T ss_pred             CCceEEEEEEECCEEEEEecCcccc-------ccCccCcccccCCcceEEcCC-CEEEecccccC-CCceEEEEECCCCC
Confidence            4899999999876665543322211       0000000   01233455443 2223221 321 25689999988886


Q ss_pred             ee-eeecChhhhhhHHHHHHHH
Q 010864          460 VF-LVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       460 ~~-~~~~~~~~~~~~~~a~~~~  480 (498)
                      .| |-|+|.+++..|+.+|.-+
T Consensus       100 ~ylfqA~s~~e~~~Wi~aI~~a  121 (124)
T 3pp2_A          100 EYLIQHDSEAIISTWHKAIAQG  121 (124)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHH
Confidence            64 5589999999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.66  Score=50.65  Aligned_cols=115  Identities=13%  Similarity=0.073  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH--------hCCCCHH----
Q 010864          140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLHD----  207 (498)
Q Consensus       140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~--------l~p~~~~----  207 (498)
                      ++.|+..+++....+|.... ++..+.+......           ...=-+|+....++++        +.+.+..    
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~-----------~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHI-----------ETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTC-----------GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            68899999999999997643 3333333221111           0013456666666653        2333332    


Q ss_pred             ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864          208 ------AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI  281 (498)
Q Consensus       208 ------a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai  281 (498)
                            .+..-+..+..    .|+++-|+       ++.++|+..-|....+|+.|+.+|..+|+|          +.|+
T Consensus       333 ~~~~~~LL~~Qa~FLl~----K~~~elAL-------~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~AL  391 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLN----RGDYELAL-------GVSNTSTELALDSFESWYNLARCHIKKEEY----------EKAL  391 (754)
T ss_dssp             HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred             cCcchHHHHHHHHHHhc----cCcHHHHH-------HHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HHHH
Confidence                  22222444445    78888887       799999999999999999999999999999          8888


Q ss_pred             HHHHHH
Q 010864          282 SKFRAA  287 (498)
Q Consensus       282 ~~~~~A  287 (498)
                      -.++-+
T Consensus       392 LtLNSc  397 (754)
T 4gns_B          392 FAINSM  397 (754)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.81  E-value=1.8  Score=47.28  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCHH----------HHH
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSPQ----------ALN  255 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~-~~~~~~g~~~eA~~~~~~Al~~~~~Al~-l~P~~~~----------a~~  255 (498)
                      ++.|+..+++..+.+|.....+ ....+.. .  +...+--+|+....++++.+...+. +.+.+..          .+.
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~--~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~  341 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILD--HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN  341 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHT--TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence            6889999999999999764433 2222221 1  0012344566655555554444332 2333332          233


Q ss_pred             HHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       256 ~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      .-+..+...|++          +-|+.+-++|+.+.|.....|+.|+.+|..+|+
T Consensus       342 ~Qa~FLl~K~~~----------elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d  386 (754)
T 4gns_B          342 IQTNFLLNRGDY----------ELALGVSNTSTELALDSFESWYNLARCHIKKEE  386 (754)
T ss_dssp             HHHHHHHHTTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCcH----------HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc
Confidence            334444455666          999999999999999999999999999999999

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=92.21  E-value=0.23  Score=41.34  Aligned_cols=86  Identities=14%  Similarity=0.278  Sum_probs=63.3

Q ss_pred             CCchhhhhhhhccchhhhhhh---cccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeec
Q 010864          381 APHSDWKRSQFVLNHEGLQQA---SKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETI  456 (498)
Q Consensus       381 ~~~~~w~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~  456 (498)
                      .....|++|+++|-+.+....   .-..++.             +..+++.|+...|..|+.|-.+-+| .-..|.+.+.
T Consensus        37 ~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPk-------------ssKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~  103 (136)
T 1v5m_A           37 GGTAQWQKCRLLLRRAVAGERFRLEFFVPPK-------------ASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVE  103 (136)
T ss_dssp             CCSCCCEEEEEEEEECSSSCCEEEEEESSTT-------------SSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCT
T ss_pred             CcccchhheeeEEEEccCCCceEEEEecCCc-------------ccCCccccchhhhhhhhhccccccCCccceEEEEec
Confidence            345689999999977522110   0111111             1235789999999999999999999 7788999877


Q ss_pred             CCc-eeeeecChhhhhhHHHHHHH
Q 010864          457 HGP-VFLVADSWEALDGWLDAIRL  479 (498)
Q Consensus       457 ~~~-~~~~~~~~~~~~~~~~a~~~  479 (498)
                      .+- .+|-++|..++..|+..|+-
T Consensus       104 n~~eyi~ea~d~~q~~sWla~Ir~  127 (136)
T 1v5m_A          104 NGAEYILETIDSLQKHSWVADIQG  127 (136)
T ss_dssp             TSCBEEEECSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHh
Confidence            774 47778899999999999964

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=91.83  E-value=0.12  Score=42.92  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=57.3

Q ss_pred             hhhhccccCCCCCCCCCCch-hhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          365 YLKAGYLTAPPAGIPVAPHS-DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~-~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      -.+.|+|....    .+-.. .|+++||||..+-|..+-..+..                ....-|||+.+. +..+.+-
T Consensus        12 VirkGWL~k~~----~g~~k~~wk~rWFVLt~~~L~yyKd~~ek----------------e~~G~IpL~~~~-vr~v~~~   70 (125)
T 1dyn_A           12 VIRKGWLTINN----IGIMKGGSKEYWFVLTAENLSWYKDDEEK----------------EKKYMLSVDNLK-LRDVEKG   70 (125)
T ss_dssp             EEEEEEEEESC----CCGGGTSSEEEEEEEESSEEEEESSTTCS----------------CEEEEEECTTEE-EEECCSC
T ss_pred             eEEEEEEEEec----CccccCCceeeEEEEeccceeeecCCccc----------------ccceEEECCCce-EeccCCC
Confidence            35678877521    22233 59999999998888765544332                234456665433 2222222


Q ss_pred             CCCCCCeeeEeecCC--------ceeeeecChhhhhhHHHHHH
Q 010864          444 TLPPGAGLCIETIHG--------PVFLVADSWEALDGWLDAIR  478 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~  478 (498)
                      ....-+.|.+-...|        ...|-|+|.+++++|..||+
T Consensus        71 ~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~  113 (125)
T 1dyn_A           71 FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFL  113 (125)
T ss_dssp             SSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHH
Confidence            234556666653333        34899999999999999995

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.81  E-value=1.4  Score=38.99  Aligned_cols=99  Identities=12%  Similarity=-0.036  Sum_probs=65.8

Q ss_pred             hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864          136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA  215 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~  215 (498)
                      ..|+++.|.+..++.     ++...|..||......|+              ++-|+.+|+++     ++..   .+-.+
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------------~~lAe~cy~~~-----~D~~---~L~~L   69 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------------ASLAEMIYQTQ-----HSFD---KLSFL   69 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHT-----TCHH---HHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHh-----CCHH---HHHHH
Confidence            468999999887654     778999999999999999              99999999987     3322   33334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864          216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA  287 (498)
Q Consensus       216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A  287 (498)
                      |..    .|+.+.-.       +.-+.+... -+    ++....++..+|++          +++++.|.+.
T Consensus        70 y~~----tg~~e~L~-------kla~iA~~~-g~----~n~af~~~l~lGdv----------~~~i~lL~~~  115 (177)
T 3mkq_B           70 YLV----TGDVNKLS-------KMQNIAQTR-ED----FGSMLLNTFYNNST----------KERSSIFAEG  115 (177)
T ss_dssp             HHH----HTCHHHHH-------HHHHHHHHT-TC----HHHHHHHHHHHTCH----------HHHHHHHHHT
T ss_pred             HHH----hCCHHHHH-------HHHHHHHHC-cc----HHHHHHHHHHcCCH----------HHHHHHHHHC
Confidence            444    56554433       122222211 11    12223567778888          8888888654

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=91.55  E-value=0.13  Score=50.95  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-..     .....|+++||+|....|..+.....                ......|+|..+. +..+.+.  
T Consensus       214 ~k~G~L~K~g-----~~~k~WkkRwFVL~~~~L~Yyk~~~~----------------~~p~G~I~L~~~~-v~~~~~~--  269 (347)
T 2r09_A          214 DREGWLLKLG-----GRVKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENLS-IREVEDP--  269 (347)
T ss_dssp             CEEEEEEEEC-----SSSCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCE-EEEECCS--
T ss_pred             ccCCeeEecC-----CCcccceeEEEEEcCCEEEEEcCCCc----------------cCCcEEEEcCCeE-EEEccCC--
Confidence            3467776431     12457999999998766655432221                1123356666553 3333221  


Q ss_pred             CCCCeeeEeecC---------------------Cc-eeeeecChhhhhhHHHHHHHHH
Q 010864          446 PPGAGLCIETIH---------------------GP-VFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       446 p~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ...++|.|.|..                     +. .||.|+|.++++.|++||+.+.
T Consensus       270 ~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai  327 (347)
T 2r09_A          270 RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI  327 (347)
T ss_dssp             SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            244566665432                     12 4789999999999999999764

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=91.32  E-value=0.097  Score=52.69  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=50.3

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC--cee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG--PVF  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~  461 (498)
                      ..|.++||+|....+..... ..             .   .....|+|... ++.++.+  ..+.++|.|.|..|  ..|
T Consensus       295 ~~WkkRwfvL~~~~L~y~k~-~~-------------~---~~~~~i~l~~~-~v~~~~~--~~r~~~F~i~t~~~~~~~~  354 (385)
T 2q13_A          295 STWDRQFYFTQGGNLMSQAR-GD-------------V---AGGLAMDIDNC-SVMAVDC--EDRRYCFQITSFDGKKSSI  354 (385)
T ss_dssp             -CCEEEEEEEETTEEEEECS-SC-------------S---SCEEEEECTTC-EEEEECC--TTCSSEEEEECTTSCBCCC
T ss_pred             CCceeEEEEEECCEEEEecC-CC-------------c---CCCceEEccce-EEEeccc--cCCCceEEEEeCCCCeEEE
Confidence            36999999998776643222 10             0   11233444321 2233322  34668999998875  358


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      |.|+|.++++.|+.||.-+.
T Consensus       355 l~A~s~~e~~~Wi~ai~~~~  374 (385)
T 2q13_A          355 LQAESKKDHEEWICTINNIS  374 (385)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHHHH
Confidence            99999999999999998753

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=91.05  E-value=0.14  Score=42.20  Aligned_cols=94  Identities=14%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             hccccCCCCCCCCCCch-hhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC----
Q 010864          368 AGYLTAPPAGIPVAPHS-DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD----  442 (498)
Q Consensus       368 ~~~~~~~~~~~~~~~~~-~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  442 (498)
                      +|++..+..+.   -.. .|+++||+|....+..+........             ......|+|..+.+|+++..    
T Consensus         4 eGwl~~pk~~~---~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~-------------~~p~~~Idl~~~~~V~~V~~~d~i   67 (117)
T 2rov_A            4 EGWLSLPVRNN---TKKFGWVKKYVIVSSKKILFYDSEQDKEQ-------------SNPYMVLDIDKLFHVRPVTQTDVY   67 (117)
T ss_dssp             EEEEECCCCSS---SSCCCCCEEEEEEETTEEEEESCHHHHHT-------------TCCSEEECGGGEEEEEECCTTTCS
T ss_pred             EEEEEeecCCC---ccCCCcEEEEEEEECCEEEEEECCCCccc-------------CCceEEEECcccEEEEEccccccc
Confidence            57776542222   123 6999999998887776554332210             01234566666666554432    


Q ss_pred             ----CCCCCCCeeeEeec------CCceeeeecChhhhhhHHHHHHH
Q 010864          443 ----LTLPPGAGLCIETI------HGPVFLVADSWEALDGWLDAIRL  479 (498)
Q Consensus       443 ----~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~  479 (498)
                          -.+|  ..|.|-+.      ....||.|+|.++...|+.||+-
T Consensus        68 ~~~~~~~p--~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~  112 (117)
T 2rov_A           68 RADAKEIP--RIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVK  112 (117)
T ss_dssp             SSCTTTGG--GEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccccccCC--cEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence                1233  45666542      23569999999999999999973

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=90.61  E-value=1.2  Score=34.90  Aligned_cols=51  Identities=14%  Similarity=0.088  Sum_probs=42.2

Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      ..+...++.|+....+|++.+               .    .|++++|+.+|.+|+..|..++...|+..
T Consensus         6 ~~~~~~l~~Ai~lv~~Ave~D---------------~----~g~y~eAl~~Y~~Aie~l~~alk~e~~~~   56 (93)
T 1wfd_A            6 SGQDSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS   56 (93)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             ccchHHHHHHHHHHHHHHHHH---------------H----hCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            344556889999988887653               3    89999999999999999999999887644

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.28  E-value=0.48  Score=36.40  Aligned_cols=46  Identities=26%  Similarity=0.216  Sum_probs=38.4

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      ...++|+....+|++.               -.    .|++++|+.+|.+|+..|.+++...|+.
T Consensus        14 ~~~~~Ai~lv~~Ave~---------------D~----~g~y~eAl~lY~~aie~l~~alk~e~d~   59 (83)
T 2w2u_A           14 MLEEMARKYAINAVKA---------------DK----EGNAEEAITNYKKAIEVLAQLVSLYRDG   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHHH---------------HH----hccHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            4578888888888665               34    9999999999999999999999887654

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=89.78  E-value=0.34  Score=41.58  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             CCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010864          447 PGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       447 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .-++|+|.+...   +.+|-|+|-+++.+|+.||+=+.
T Consensus       110 ~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa  147 (150)
T 2fjl_A          110 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA  147 (150)
T ss_dssp             CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence            457899987644   57999999999999999998663

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=89.78  E-value=1.8  Score=35.45  Aligned_cols=47  Identities=19%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ  252 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~  252 (498)
                      .+++|+....+|+..               -.    .|+|++|+.+|.+|+.+|.++++..+.+..
T Consensus        14 ~l~kAi~lv~~Ave~---------------D~----ag~y~eAl~lY~~Aie~l~~alk~e~~~~~   60 (117)
T 2cpt_A           14 NLQKAIDLASKAAQE---------------DK----AGNYEEALQLYQHAVQYFLHVVKYEAQGDK   60 (117)
T ss_dssp             HHHHHHHHHHHHHHH---------------HH----HTCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHHH---------------HH----ccCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            578888888888743               23    899999999999999999999998866654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.44  E-value=0.56  Score=35.99  Aligned_cols=45  Identities=20%  Similarity=0.119  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      .++|+....+|++.+               .    .|++.+|+.+|.+|+..|.+++...|+..
T Consensus         8 ~~~Ai~lv~~Ave~D---------------~----~g~y~eAl~lY~~aie~l~~~lk~e~d~~   52 (83)
T 2v6y_A            8 EDMARKYAILAVKAD---------------K----EGKVEDAITYYKKAIEVLSQIIVLYPESV   52 (83)
T ss_dssp             HHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            677888888886653               4    99999999999999999999998876543

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=88.92  E-value=0.14  Score=51.51  Aligned_cols=95  Identities=15%  Similarity=0.303  Sum_probs=55.2

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhcc--chhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVL--NHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||.--.     .....|+++||+|  ...-|..+...+.                ..+...|+|.++..+......
T Consensus       147 ~keG~L~KrG-----~~~k~WkrRwFVL~~~~~~L~Yy~~~~~----------------~~p~g~I~L~~~~~~~~~~~~  205 (386)
T 3lju_X          147 YREGFLWKRG-----RDNGQFLSRKFVLTEREGALKYFNRNDA----------------KEPKAVMKIEHLNATFQPAKI  205 (386)
T ss_dssp             EEEEEEEEEC-----SSSCCEEEEEEEEETTTTEEEEEC---------------------CCSEEEEGGGEEEEECHHHH
T ss_pred             ccccceeeec-----cccCCceEEEEEEEcCCCEEEEECCCCc----------------cCcccEEEeeccEEEEccccc
Confidence            3477776431     2245899999999  4445554433221                124556777776555422223


Q ss_pred             CCCCCCeeeEe--ecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          444 TLPPGAGLCIE--TIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       444 ~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .-|-||.+...  |..--.||.|+|.++++.|++||+.+.
T Consensus       206 ~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          206 GHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             TSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            33444444322  111124889999999999999999763

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.77  E-value=1.8  Score=33.56  Aligned_cols=44  Identities=25%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN  255 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~  255 (498)
                      ..+...+..+..    .|+|++|+++.++|..++..|+++- .+.+++.
T Consensus        16 H~~~RrAe~ll~----~gkydeAIech~kAa~yL~eAmklt-qs~qa~~   59 (97)
T 2crb_A           16 HQQSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKLT-ESEQAHL   59 (97)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHH
T ss_pred             hHhhhHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence            445566667777    9999999999999999999999987 6666655

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=88.12  E-value=0.35  Score=45.60  Aligned_cols=87  Identities=24%  Similarity=0.400  Sum_probs=55.0

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccC---CCCCCCCeeeEeecCC-
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACAD---LTLPPGAGLCIETIHG-  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-  458 (498)
                      ...|.++||+|...++....+..+..             ++.-...+++++..-..+...   ..-|-.++|+|....- 
T Consensus       145 ~K~WkkRyfvLr~sgLy~~~k~~sk~-------------~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~  211 (256)
T 3hk0_A          145 KKSWKKLYVCLRRSGLYCSTKGTSAA-------------PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVR  211 (256)
T ss_dssp             SSCEEEEEEEEETTEEEEESSTTCCC-------------GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCS
T ss_pred             CCcceEEEEEEeCCEEEEEecCCCCc-------------cccceEEEEcCCCEEEEecccccccCCCCCCEEEEEccccc
Confidence            46899999999988876544332210             011112346665444333322   3556677888762221 


Q ss_pred             -----ceeeeecChhhhhhHHHHHHHHHH
Q 010864          459 -----PVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       459 -----~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                           -.||-|+|.+++..|..||+++.+
T Consensus       212 ~~~~~~~~lcaede~~~~~W~~aIr~ak~  240 (256)
T 3hk0_A          212 NETKELRLLCAEDEQTRTSWMTAFRLLKY  240 (256)
T ss_dssp             SCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                 259999999999999999999753

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=87.98  E-value=0.5  Score=45.12  Aligned_cols=90  Identities=16%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ...|.++||+|....|.-+.........          ........|+|..-. ++.+.|-+ -.-++|+|.|..|.. +
T Consensus        36 ~r~Wkk~w~VLkg~~L~fYKde~~~~~~----------~~~~p~~~I~L~ga~-v~~a~d~~-kKk~vF~L~t~~g~~yL  103 (279)
T 3a8n_A           36 RRKWKHYWVSLKGCTLFFYETDGRSGID----------HNSVPKHAVWVENSI-VQAVPEHP-KKDFVFCLSNSLGDAFL  103 (279)
T ss_dssp             CCCCEEEEEEEETTEECCBCCC------------------CCCSSCCBCCSCE-ECCCTTSS-SSCSCCCEEETTTEEEE
T ss_pred             CCCCeEEEEEEeCCEEEEEecccccccc----------cccCCCceEeccCcE-EEeccccC-CCCcEEEEEcCCCCEEE
Confidence            4689999999987666554432221100          000112234443222 12121211 134789998888876 5


Q ss_pred             eeecChhhhhhHHHHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      |-|+|.+++..|+.||..+...+
T Consensus       104 FQA~s~eEm~~WI~aI~~a~~~~  126 (279)
T 3a8n_A          104 FQTTSQTELENWITAIHSACAAA  126 (279)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhhh
Confidence            56889999999999999887643

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=87.98  E-value=0.2  Score=41.91  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeec-CCce-
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI-HGPV-  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~-  460 (498)
                      ...|.++|++|...-|-.+.....+.       .........+.-.|+|+.. .|+.+.+.+  .-++|.|.+. .|-+ 
T Consensus        21 ~ksWkr~W~vL~g~~L~yf~~~~~~~-------~~~~~~~~~P~~~i~L~g~-~V~~~e~~~--~~~~F~L~~~~~G~~Y   90 (126)
T 2dtc_A           21 LSSWTRYWVVLSGATLLYYGAKSLRG-------TDRKHYKSTPGKKVSIVGW-MVQLPDDPE--HPDIFQLNNPDKGNVY   90 (126)
T ss_dssp             SCCCEEEEEEEETTEEEEEEBSSSCC-------SSGGGBCSSCSEEEECTTC-EEECCCCTT--STTEEEEECTTSCSEE
T ss_pred             ccCcccEEEEEeCCEEEEEccccccc-------ccccccccCCCceEEeCCC-EEEecCCCC--CCCEEEEeeCCCCCEE
Confidence            45899999999887766544221110       0000001123346666533 334444433  5677888766 5666 


Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      .|-|+|.++++.|+.||+-+-
T Consensus        91 ~fqA~s~~~~~~W~~ai~~a~  111 (126)
T 2dtc_A           91 KFQTGSRFHAILWHKHLDDAC  111 (126)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHH
Confidence            566789999999999998754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.84  E-value=7.2  Score=39.05  Aligned_cols=97  Identities=14%  Similarity=0.018  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      -..||..|.+    .|+|.+|.+.+.+.+..+.+   +|..  -.+.+..-..+|..++++          .++...|.+
T Consensus       102 ~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~---~dd~~~llev~lle~~~~~~~~n~----------~k~k~~l~~  164 (394)
T 3txn_A          102 EARLIALYFD----TALYTEALALGAQLLRELKK---LDDKNLLVEVQLLESKTYHALSNL----------PKARAALTS  164 (394)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHTT---SSCTHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred             HHHHHHHHHH----hhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHhccH----------HHHHHHHHH
Confidence            3488999999    99999999777666665543   2221  234555666667777777          999999999


Q ss_pred             HHHhc---CCCHH----HHHHHHHHHH-HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          287 AIQLQ---FDFHR----AIYNLGTVLY-GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       287 Al~l~---P~~~~----a~~~Lg~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      |....   +.++.    ....-|..+. ..++                   |..|..+|-.++
T Consensus       165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-------------------yk~A~~~F~eaf  208 (394)
T 3txn_A          165 ARTTANAIYCPPKVQGALDLQSGILHAADERD-------------------FKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-------------------HHHHHHHHHHHH
T ss_pred             HHhhhccCCCCHHHHHHHHHHhhHHHHHhccC-------------------HHHHHHHHHHHH
Confidence            98763   23333    3333466666 5666                   888888887776

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=87.43  E-value=7.4  Score=34.09  Aligned_cols=119  Identities=13%  Similarity=0.004  Sum_probs=84.1

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      -.+|+.++-.-.-   +-|..++--..++.+++-.|.              |.+++-.+.     +-+...+.+.-..||
T Consensus        15 Y~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngE--------------Y~R~Lf~L~-----~lNT~Ts~YYk~LCy   72 (242)
T 3kae_A           15 YRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGE--------------YTRALFHLH-----KLNTCTSKYYESLCY   72 (242)
T ss_dssp             TTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTC--------------HHHHHHHHH-----TCCBHHHHHHHHHHH
T ss_pred             cccccHHHHHHHH---HccCChHHHhhhhhhhhhcch--------------HhHHHHHHH-----hcchHHHHHHHHHHH
Confidence            3556665543322   234444556778889999999              888876553     345667777788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHH--h---------------cCCCCHH-HHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAV--Q---------------LNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVR  278 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al--~---------------l~P~~~~-a~~~lg~~l~~~g~~~~a~~~~~~~~  278 (498)
                      ..    +.++..|+       ...++.+  .               +||.+.+ .++.+|.++.+.|..          +
T Consensus        73 ~k----lKdYkkA~-------~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r----------~  131 (242)
T 3kae_A           73 KK----KKDYKKAI-------KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYR----------E  131 (242)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCH----------H
T ss_pred             HH----HHHHHHHH-------HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCH----------H
Confidence            88    99999999       5777776  2               2344444 467789999999999          9


Q ss_pred             HHHHHHHHHHHhcCCCHHHH
Q 010864          279 TAISKFRAAIQLQFDFHRAI  298 (498)
Q Consensus       279 ~Ai~~~~~Al~l~P~~~~a~  298 (498)
                      +||.+|.......|-++.+-
T Consensus       132 EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          132 EGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHHHHHHCCCHHHHH
T ss_pred             HhhhHhhhhcCCccccchHH
Confidence            99999999999988866544

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=87.19  E-value=0.4  Score=45.86  Aligned_cols=87  Identities=17%  Similarity=0.322  Sum_probs=51.3

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCc--cccccccc-CCCCCCCCeeeEeec---
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPD--IVSVSACA-DLTLPPGAGLCIETI---  456 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~p~~~~~~~~~~---  456 (498)
                      ...|.++||+|...++....+..+..             +..-...+++++  |-.+.... ...-|-.++|+|...   
T Consensus       171 ~k~WkkRyfvLr~sgLyy~~K~~sk~-------------~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~  237 (281)
T 4gmv_A          171 KKSWKKRYFLLRASGIYYVPKGKAKV-------------SRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQ  237 (281)
T ss_dssp             SSCEEEEEEEECSSCEEEC----------------------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCC
T ss_pred             CCCCeEEEEEEeCCEEEEEeCCCCCc-------------cccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCccC
Confidence            35899999999888876544432211             011122234443  22221111 134477888888732   


Q ss_pred             ---CCceeeeecChhhhhhHHHHHHHHHH
Q 010864          457 ---HGPVFLVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       457 ---~~~~~~~~~~~~~~~~~~~a~~~~~~  482 (498)
                         ..-.||-|+|..+++.|..||+++-+
T Consensus       238 ~~~~~~~~~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          238 KKSQYIKYLCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             SCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence               22359999999999999999999743

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.08  E-value=10  Score=36.66  Aligned_cols=126  Identities=12%  Similarity=0.038  Sum_probs=67.8

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  192 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~  192 (498)
                      .|++=+|.+.+..+...    +.++++|++|++.+...              +..+.+.|+              +..|.
T Consensus        26 ~G~yYEAhQ~~Rtl~~R----y~~~~~~~eAidlL~~g--------------a~~ll~~~Q--------------~~sa~   73 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANR----YVRSKSYEHAIELISQG--------------ALSFLKAKQ--------------GGSGT   73 (312)
T ss_dssp             HTCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHH--------------HHHHHHTTC--------------HHHHH
T ss_pred             ccChHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH--------------HHHHHHCCC--------------cchHH
Confidence            46677888888887777    77888999998875543              233333344              33333


Q ss_pred             HHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          193 KKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       193 ~~~~~Al~l-----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~-~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      +...-.++.     .+-+.....++..++..    ...-+... +...+|++.-.+.-...-.++..+..+|..|++.|+
T Consensus        74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~----~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~  149 (312)
T 2wpv_A           74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAE----LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF  149 (312)
T ss_dssp             HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT----CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence            322222111     12233333444444332    22211111 112223333332222223589999999999999999


Q ss_pred             cchHHhhhhhHHHHHHHH
Q 010864          267 IVPAREKQTIVRTAISKF  284 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~  284 (498)
                      +          .+|..+|
T Consensus       150 ~----------~~A~~H~  157 (312)
T 2wpv_A          150 V----------YEAERYF  157 (312)
T ss_dssp             H----------HHHHHHH
T ss_pred             H----------HHHHHHH
Confidence            9          6666655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.25  E-value=5.3  Score=40.00  Aligned_cols=124  Identities=13%  Similarity=-0.020  Sum_probs=83.0

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC------C
Q 010864          138 RILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------L  205 (498)
Q Consensus       138 g~~~~A~~~~~~al~~~P~~~~------a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~------~  205 (498)
                      +..+.-++.+..+++..-+.-.      .-..+|..|+..|+              |.+|.+.+.+.++-...      .
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~--------------y~~a~~~i~~l~~~~~~~dd~~~l  138 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTAL--------------YTEALALGAQLLRELKKLDDKNLL  138 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTSSCTHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhccccchhH
Confidence            3344455666666543322211      23389999999999              99999999999886322      2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HhcCcchHHhhhhhHHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISK  283 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~-~~g~~~~a~~~~~~~~~Ai~~  283 (498)
                      .+.+..-..+|..    ++++..+...|.+|...-. ++-.+|. .+.....-|..+. ..++|          ++|-.+
T Consensus       139 lev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdy----------k~A~~~  203 (394)
T 3txn_A          139 VEVQLLESKTYHA----LSNLPKARAALTSARTTAN-AIYCPPKVQGALDLQSGILHAADERDF----------KTAFSY  203 (394)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTTSCH----------HHHHHH
T ss_pred             HHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHhhHHHHHhccCH----------HHHHHH
Confidence            3556666777777    9999999977776665543 2222332 3445566677777 78888          999999


Q ss_pred             HHHHHHh
Q 010864          284 FRAAIQL  290 (498)
Q Consensus       284 ~~~Al~l  290 (498)
                      |-++++-
T Consensus       204 F~eaf~~  210 (394)
T 3txn_A          204 FYEAFEG  210 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9888754

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.26  E-value=0.69  Score=38.93  Aligned_cols=85  Identities=14%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             chhhhhhhhccchhhhhhh-cccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-CCCCeeeEeecC--C
Q 010864          383 HSDWKRSQFVLNHEGLQQA-SKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPGAGLCIETIH--G  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~--~  458 (498)
                      ...|+++||++....|..+ ++.+..               +.+...|+|+... |.|  |.++ +-.|+|.+-+..  |
T Consensus        25 lK~~KrrWFvlk~~~L~YyK~kee~~---------------~ePig~I~L~gce-V~p--d~~~~~~kf~ikl~iPs~~g   86 (137)
T 2ys3_A           25 LKGYRQHWVVFKETTLSYYKSQDEAP---------------GDPIQQLNLKGCE-VVP--DVNVSGQKFCIKLLVPSPEG   86 (137)
T ss_dssp             SSSSCCCEEEECSSCEEEESSTTTTT---------------SCCSCCBCTTTCE-EEE--CCBGGGTBEEEEEEEECSSS
T ss_pred             cccceeEEEEEeCCEEEEECCchhcc---------------CCCceEEECCCCE-Eec--cccccCCceEEEEEccCCCC
Confidence            3479999999987776665 333321               1223344444322 222  2222 245566555321  1


Q ss_pred             --ceeeeecChhhhhhHHHHHHHHHHHHhhccc
Q 010864          459 --PVFLVADSWEALDGWLDAIRLVYTIYARGKA  489 (498)
Q Consensus       459 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  489 (498)
                        -+||.+||.+..+.|..|++++    .+||.
T Consensus        87 ~r~y~l~cdsEeqy~~WMaA~rlA----skgkt  115 (137)
T 2ys3_A           87 MSEIYLRCQDEQQYARWMAGCRLA----SKGRT  115 (137)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHH----HTSCC
T ss_pred             ceEEEEECCCHHHHHHHHHHHHHh----ccCcc
Confidence              2699999999999999999965    46753

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.07  E-value=28  Score=33.87  Aligned_cols=119  Identities=12%  Similarity=-0.089  Sum_probs=61.5

Q ss_pred             hhcH---HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHH
Q 010864          113 AEQN---NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE  189 (498)
Q Consensus       113 ~~~~---~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~  189 (498)
                      .|++   =+|.+.+..+...    +.++++|++|++++...              +..+.+.|+              +.
T Consensus        25 ~G~y~~~YEAHQ~~RTi~~R----y~~~k~y~eAidLL~~G--------------A~~ll~~~Q--------------~~   72 (336)
T 3lpz_A           25 EGQPEEQYEAAQETRLVAAR----YSKQGNWAAAVDILASV--------------SQTLLRSGQ--------------GG   72 (336)
T ss_dssp             HCCHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHH--------------HHHHHHTTC--------------HH
T ss_pred             CCCCccccHHHHHHHHHHHH----HHhhcCHHHHHHHHHHH--------------HHHHHHCCC--------------cc
Confidence            3666   6777777777766    77888999888765443              233333333              33


Q ss_pred             HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864          190 EACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAEE-LWKQATKNYEKAVQLNWNSPQALNNWGLALQE  263 (498)
Q Consensus       190 ~A~~~~~~Al~l-----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~-~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~  263 (498)
                      -|.+...-.++.     -+-+.....++..++..    ...-+-... ..++|+++-.+.=...-.++..+..+|..|++
T Consensus        73 sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~----~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~  148 (336)
T 3lpz_A           73 SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL----FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE  148 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT----SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc
Confidence            332222111111     11122333334443333    322111111 22333344433112234589999999999999


Q ss_pred             hcCc
Q 010864          264 LSAI  267 (498)
Q Consensus       264 ~g~~  267 (498)
                      .+++
T Consensus       149 e~~~  152 (336)
T 3lpz_A          149 EGEF  152 (336)
T ss_dssp             TTCH
T ss_pred             cCCH
Confidence            9999

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.88  E-value=2.3  Score=43.20  Aligned_cols=105  Identities=11%  Similarity=-0.007  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864          155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEE  231 (498)
Q Consensus       155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~  231 (498)
                      ..-..++..+|..|...|+              +++|.++|.++......   ..+.+.++-.++..    .+++..+..
T Consensus       128 ~e~~~~~~~la~~~~~~Gd--------------~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~  189 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGD--------------KDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKE  189 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCC--------------CTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence            3345688999999999999              99999999999887443   35677777777777    999999996


Q ss_pred             HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864          232 LWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ  291 (498)
Q Consensus       232 ~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~  291 (498)
                      .+.+|.....    ..++.   .......|.++...++|          .+|-.+|-.++...
T Consensus       190 ~~~ka~~~~~----~~~d~~~~~~lk~~~gl~~l~~r~f----------~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          190 KLEAVNSMIE----KGGDWERRNRYKTYYGIHCLAVRNF----------KEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHT----TCCCTHHHHHHHHHHHHGGGGTSCH----------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhh----cCCCHHHHHHHHHHHHHHHHHhChH----------HHHHHHHHHHhccC
Confidence            5555433222    12221   12334455666666777          99999998887653

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.97  E-value=3.4  Score=33.55  Aligned_cols=27  Identities=19%  Similarity=0.374  Sum_probs=25.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      .|+-++|+++|++.+..++++|.+..+
T Consensus        35 ~g~k~~Al~lYk~GI~eLe~Gl~I~~~   61 (116)
T 2dl1_A           35 LGQKEEAKNYYKQGIGHLLRGISISSK   61 (116)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            799999999999999999999988764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=82.86  E-value=5.4  Score=30.43  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS  250 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~  250 (498)
                      .+++|+....+|+..               -.    .|++++|+.+|.+|+..|..++...++.
T Consensus         9 ~l~~A~~l~~~Av~~---------------D~----~g~y~eAl~~Y~~aie~l~~a~k~e~~~   53 (85)
T 2v6x_A            9 FLTKGIELVQKAIDL---------------DT----ATQYEEAYTAYYNGLDYLMLALKYEKNP   53 (85)
T ss_dssp             HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            377888888888643               34    8999999999999999999999888654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=81.87  E-value=29  Score=39.16  Aligned_cols=98  Identities=10%  Similarity=-0.118  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELW  233 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~  233 (498)
                      ...|+.+-..|.+.|+              .++|...|.+.-+.    ..-+...|+-|-..|.+    .|++++|.   
T Consensus       127 ~~TynaLIdglcK~G~--------------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~---  185 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQ--------------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELV---  185 (1134)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHH---
T ss_pred             HHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHH---
Confidence            3467888889999999              99999999775432    23366889999999999    99999999   


Q ss_pred             HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864          234 KQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL  290 (498)
Q Consensus       234 ~~Al~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l  290 (498)
                          ..|++..+  +.| +..+|+.+-.++.+.|+.         .++|...|++..+.
T Consensus       186 ----~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~---------~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          186 ----YVLFMVKDAGLTP-DLLSYAAALQCMGRQDQD---------AGTIERCLEQMSQE  230 (1134)
T ss_dssp             ----HHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHc
Confidence                46666654  345 788888888899999984         15777888888775

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.84  E-value=21  Score=33.61  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=55.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN  300 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~  300 (498)
                      .|.+++|+       ......++.+|.++.....|-.+|+-.|++          +.|..-++-+.+++|+.......
T Consensus        10 ~g~L~~al-------~~~~~~VR~~P~da~~R~~LfqLLcv~G~w----------~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A           10 EGQLQQAL-------ELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             TTCHHHHH-------HHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             CCCHHHHH-------HHHHHHHHhCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhhHHHHH
Confidence            78888888       689999999999999999999999999999          99999999999999998665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	498
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-04
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	3e-04
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	7e-04
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 35/166 (21%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   Y  AIE  P   DA  N A  L+E                 + EA   Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           PT  D+  N A       + +G  +EA  L       Y KA+++      A +N    LQ
Sbjct: 302 PTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASVLQ 350

Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
           +   +          + A+  ++ AI++   F  A  N+G  L  +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 49/190 (25%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A   +  A+  +P   DA  N   VL+E+                 + A   Y  A  L 
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARI--------------FDRAVAAYLRALSLS 233

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P       N A    ++    G    A +        Y +A++L  + P A  N   AL+
Sbjct: 234 PNHAVVHGNLACVYYEQ----GLIDLAIDT-------YRRAIELQPHFPDAYCNLANALK 282

Query: 263 ELSAIVPAREKQTIVRT------------------------AISKFRAAIQLQFDFHRAI 298
           E  ++  A +                               A+  +R A+++  +F  A 
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 299 YNLGTVLYGL 308
            NL +VL   
Sbjct: 343 SNLASVLQQQ 352

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 11/75 (14%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
            E A +   +  R  P         +           R   +             A++ N
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63

Query: 248 WNSPQALNNWGLALQ 262
               +A +N G   +
Sbjct: 64  PLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 10/74 (13%)

Query: 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292
           ++ A ++  +  +   ++   L        +   +            +      AI+   
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL----------DRSAHFSTLAIKQNP 64

Query: 293 DFHRAIYNLGTVLY 306
               A  NLG V  
Sbjct: 65  LLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 14/73 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +       + P++   L   + +  +                 L+ +      A +  
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63

Query: 203 PTLHDAFYNWAIA 215
           P L +A+ N    
Sbjct: 64  PLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 41/233 (17%), Positives = 58/233 (24%), Gaps = 67/233 (28%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           +A     AI++NP   +A  N   V +E                L  +    Y       
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111

Query: 203 PTLHDAFYNWAIAISDRAKM---------------------------------------- 222
               D        +S                                             
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 223 ---RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------- 272
               G    A+     A  ++EKAV L+ N   A  N G  L+E      A         
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

Query: 273 -----------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
                            +Q ++  AI  +R AI+LQ  F  A  NL   L   
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 47/185 (25%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK-------Y 195
           +A+    A     +  D+    A V                    L++  +K       Y
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--------------LQDLYQKMLVTDLEY 50

Query: 196 DEATRLCPTLH-DAFYNWAIAISDRAK-------------MRGRTKEAEELWKQATKNYE 241
               ++   L   AF N    +  +AK             +    + A   + Q  +   
Sbjct: 51  ALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110

Query: 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
               ++       +  G+             KQT     +    ++          + +L
Sbjct: 111 TVFNVDLPCRVKSSQLGIISN----------KQTHTSAIVKPQSSSCSY--ICQHCLVHL 158

Query: 302 GTVLY 306
           G +  
Sbjct: 159 GDIAR 163

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 11/173 (6%), Positives = 30/173 (17%), Gaps = 39/173 (22%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             +        +           ++  +                      K    +    
Sbjct: 105 LLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYI 150

Query: 203 PTLHDAFYNWAIAISDRAK-----------------------MRGRTKEAEELWKQATKN 239
                   +       R +                              ++         
Sbjct: 151 C--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208

Query: 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292
           Y +++ + +  P A  N   AL +        + +  V   I  F       +
Sbjct: 209 YCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY 261

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 18/199 (9%), Positives = 58/199 (29%), Gaps = 26/199 (13%)

Query: 110 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169
            +  ++         +V    + G   + +L       +  +  NP+          VLQ
Sbjct: 19  LEREQKLKLYQSATQAVFQKRQAGELDESVLEL----TSQILGANPDFATLWNCRREVLQ 74

Query: 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229
               ++  + +     AL++      +   R+ P  +  +++    +S   +        
Sbjct: 75  ----HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------- 123

Query: 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289
              W +  +   + ++ +  +    +       +                 ++   + I 
Sbjct: 124 --NWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLIT 172

Query: 290 LQFDFHRAIYNLGTVLYGL 308
             F  + + +    +L  L
Sbjct: 173 RNFSNYSSWHYRSCLLPQL 191

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 14/129 (10%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
           A +    AI+ +P+D     ++  +L    D               E A ++  ++ +L 
Sbjct: 15  ALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLF 60

Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
           P            +      +   + A                +++N      ++    +
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 263 ELSAIVPAR 271
               I   R
Sbjct: 121 LALQIEELR 129

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD-EATRL 201
           A K   +AIE N  +Y   +   ++L+    +  L        A++EE  K Y     R 
Sbjct: 62  AFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQPKNYQVWHHRR 119

Query: 202 CPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNS 250
                    +  +                   R    +  +LW    +  ++ ++ +  +
Sbjct: 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 179

Query: 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-- 308
               N     +   +        +  V+         I+L      A   L  +L     
Sbjct: 180 NSVWNQRYFVISNTTGYNDRAVLEREVQ----YTLEMIKLVPHNESAWNYLKGILQDRGL 235

Query: 309 --AEDTLRTGGTVNPREVSPNELYSQSAIY 336
               + L     + P   SP  +     IY
Sbjct: 236 SKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 19/183 (10%), Positives = 41/183 (22%), Gaps = 48/183 (26%)

Query: 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209
            I  + +  D    +  VLQ              +D   E A K   +A  L    +  +
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQ--------------RDERSERAFKLTRDAIELNAANYTVW 80

Query: 210 YNWAIAISDRAK------------------------MRGRTKEAEELWKQATKNYEKAVQ 245
           +   + +    K                         R    E      Q  +     + 
Sbjct: 81  HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 140

Query: 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
            +  +  A  +    +QE            +    +      ++     +        V+
Sbjct: 141 QDAKNYHAWQHRQWVIQEF----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 190

Query: 306 YGL 308
              
Sbjct: 191 SNT 193

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 21/123 (17%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
             EA   Y  A    P +   + N A+      +            +QA  +  +A++L+
Sbjct: 20  YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-----------PEQALADCRRALELD 68

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
             S +A    G    E+ +             AI+  + A  L  +      +       
Sbjct: 69  GQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALR 118

Query: 308 LAE 310
           +A+
Sbjct: 119 IAK 121

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 137 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194
            RIL F    +   N  + NP D D L  W  VL E +       +      +++EA  K
Sbjct: 8   DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITK 63

Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
           ++EA  + P   +A +    A +  A +     EA+  +  AT+ +++AV    ++   L
Sbjct: 64  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123

Query: 255 NNWGLALQEL 264
            +  +  +  
Sbjct: 124 KSLEMTAKAP 133

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 15/115 (13%)

Query: 366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRR 425
           +KAGYL              W++    L+         ++ KQ                 
Sbjct: 10  IKAGYLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDKDKQQKGE------------- 55

Query: 426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 480
              I+  D+   +                         A S +  + W+  ++ +
Sbjct: 56  -FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 109

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 24/125 (19%)

Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
             K++ +            + +A  L  +  N             + +     +E     
Sbjct: 18  FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-----------DDIRKGIVLLEELLPKG 66

Query: 203 PTLH--DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
                 D  +  A+      +           +++A K     +Q    + QA     L 
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKE-----------YEKALKYVRGLLQTEPQNNQAKELERLI 115

Query: 261 LQELS 265
            + + 
Sbjct: 116 DKAMK 120

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 21/115 (18%)

Query: 366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRR 425
           ++ GYL    +       + WK    VL  +G++   K                      
Sbjct: 6   IREGYLVKKGSVF-----NTWKPMWVVLLEDGIEFYKKKSDNSPKGM------------- 47

Query: 426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV 480
              I +      S C D            T     F  A   E  D W+  I   
Sbjct: 48  ---IPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
            + A K YD+A  L PT      N A         +G   +  EL ++A +   +  +  
Sbjct: 20  FDTALKHYDKAKELDPTNMTYITNQAA----VYFEKGDYNKCRELCEKAIEVGRENREDY 75

Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290
               +A    G +  +              + AI  +  ++  
Sbjct: 76  RQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	498
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.57
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.53
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.48
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.06
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.9
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.88
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.46
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.12
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	97.32
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.29
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	97.25
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	97.01
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	96.76
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	96.69
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	96.4
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	96.31
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	96.08
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	96.08
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	96.06
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	96.03
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	96.02
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	96.02
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	96.0
d1wi1a_	126	Calcium-dependent activator protein for secretion,	95.8
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	95.55
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	95.53
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	95.52
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	95.52
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	95.46
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	95.17
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	95.15
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	95.05
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	94.86
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	94.66
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	94.6
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	94.57
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	94.21
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	94.0
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.34
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	92.66
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.02
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	89.9
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	86.79
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	85.06

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-21  Score=192.95  Aligned_cols=191  Identities=11%  Similarity=0.055  Sum_probs=171.0

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC  192 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~  192 (498)
                      ..++.+++..+..++.       +.+.+++|+.+|+++|+++|++..+|+++|.++..+++             ++++|+
T Consensus        39 ~p~~~~a~~~~~~~~~-------~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~-------------~~~eal   98 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQ-------RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-------------DLHEEM   98 (315)
T ss_dssp             CHHHHHHHHHHHHHHH-------HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------CHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc-------------CHHHHH
Confidence            4667777777766654       48899999999999999999999999999999999874             299999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHh
Q 010864          193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE  272 (498)
Q Consensus       193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~  272 (498)
                      ..|+++++++|++..+|+++|.++..    +|++++|+       ..|+++++++|++..+|+++|.++..+|++     
T Consensus        99 ~~~~~al~~~p~~~~a~~~~~~~~~~----l~~~~eAl-------~~~~kal~~dp~n~~a~~~~~~~~~~~~~~-----  162 (315)
T d2h6fa1          99 NYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQEL-------EFIADILNQDAKNYHAWQHRQWVIQEFKLW-----  162 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHh----hccHHHHH-------HHHhhhhhhhhcchHHHHHHHHHHHHHHhh-----
Confidence            99999999999999999999999999    99999999       699999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864          273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS  352 (498)
Q Consensus       273 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~  352 (498)
                           ++|+.+|+++|+++|++..+|+++|.++...+.             ......+.+|+.++.++++++|++.....
T Consensus       163 -----~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~-------------~~~~~~~~~ai~~~~~al~~~P~~~~~~~  224 (315)
T d2h6fa1         163 -----DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG-------------YNDRAVLEREVQYTLEMIKLVPHNESAWN  224 (315)
T ss_dssp             -----TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------SCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             -----HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc-------------cchhhhhHHhHHHHHHHHHhCCCchHHHH
Confidence                 999999999999999999999999999998875             23344578999999999999999985554


Q ss_pred             HHHHH
Q 010864          353 ALRLV  357 (498)
Q Consensus       353 ~l~~~  357 (498)
                      .++.+
T Consensus       225 ~l~~l  229 (315)
T d2h6fa1         225 YLKGI  229 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-21  Score=190.62  Aligned_cols=179  Identities=18%  Similarity=0.218  Sum_probs=141.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...|++++|+.+|+++++.+|+++++|+++|.+|..+|+              +++|+..|.++++++|++..+|+++|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la   94 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ--------------ELLAISALRRCLELKPDNQTALMALA   94 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHhhhcccccccccccccc
Confidence            4567888888888888888888888888888888888888              88888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCC--
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWN--  249 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------Al~~~~~Al~l~P~--  249 (498)
                      .+|..    .|++++|++.+++                                          |+..|.++++++|+  
T Consensus        95 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          95 VSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccc----cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            88888    8888888766532                                          45566666666665  


Q ss_pred             CHHHHHHHHHHHHHhcCcchH------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          250 SPQALNNWGLALQELSAIVPA------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       250 ~~~a~~~lg~~l~~~g~~~~a------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                      ++.+++++|.++..+|++++|                        +...|++++|+.+|+++++++|+++.++++||.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            356666777777777777554                        23455568888888888888888888888888888


Q ss_pred             HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864          306 YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV  349 (498)
Q Consensus       306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~  349 (498)
                      ..+|+                   +.+|+.+|.+|++++|++..
T Consensus       251 ~~~g~-------------------~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         251 INLGA-------------------HREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHTC-------------------HHHHHHHHHHHHHHHHTC--
T ss_pred             HHCCC-------------------HHHHHHHHHHHHHhCCcChh
Confidence            88888                   88888888888888887653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4e-20  Score=182.54  Aligned_cols=169  Identities=26%  Similarity=0.326  Sum_probs=113.5

Q ss_pred             HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864          135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI  214 (498)
Q Consensus       135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~  214 (498)
                      ...|++++|+..|++++.++|.....++.+|.++...|+              +++|+..|+++++++|++..+++++|.
T Consensus       214 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~  279 (388)
T d1w3ba_         214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------------IDLAIDTYRRAIELQPHFPDAYCNLAN  279 (388)
T ss_dssp             HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            334455555555555555555555555555555555555              555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      ++..    .|++.+|+       ..|++++...|.+...+..+|.++...|++          ++|+.+|+++++++|++
T Consensus       280 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~  338 (388)
T d1w3ba_         280 ALKE----KGSVAEAE-------DCYNTALRLCPTHADSLNNLANIKREQGNI----------EEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHH----HSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHTTSCTTC
T ss_pred             HHHH----cCCHHHHH-------HHHHhhhccCCccchhhhHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCC
Confidence            5555    55555555       344555555555555555555555555555          99999999999999999


Q ss_pred             HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       295 ~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                      +.+++++|.+|..+|+                   +.+|..+|+++++++|++......++.+
T Consensus       339 ~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         339 AAAHSNLASVLQQQGK-------------------LQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHHHHHHHHTTTC-------------------CHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999                   8999999999999999999766665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.3e-20  Score=174.70  Aligned_cols=178  Identities=19%  Similarity=0.171  Sum_probs=158.2

Q ss_pred             hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      .+.++|++++|+..|+++|.++|+++.+|+++|.+|..+|+              +++|+..|+++++++|++..+++++
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH--------------HHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            36789999999999999999999999999999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------------------
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----------------------  270 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----------------------  270 (498)
                      |.++..    +|++++|+       ..|+++++.+|++......++.++...+..+..                      
T Consensus       112 g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (259)
T d1xnfa_         112 GIALYY----GGRDKLAQ-------DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF  180 (259)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred             HHHHHH----HhhHHHHH-------HHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHH
Confidence            999999    99999999       699999999999999999999888877754322                      


Q ss_pred             ----HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864          271 ----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS  346 (498)
Q Consensus       271 ----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~  346 (498)
                          ....+.++.+...+..++.+.|+...++++||.+|..+|+                   +.+|..+|+++++.+|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-------------------LDSATALFKLAVANNVH  241 (259)
T ss_dssp             HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHcCCC
Confidence                1124567777788888888889999999999999999999                   99999999999999998


Q ss_pred             HH-HHHHHH
Q 010864          347 YS-VYSSAL  354 (498)
Q Consensus       347 ~~-~~~~~l  354 (498)
                      +. .++.++
T Consensus       242 ~~~~~~~a~  250 (259)
T d1xnfa_         242 NFVEHRYAL  250 (259)
T ss_dssp             TCHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            75 344443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-19  Score=177.21  Aligned_cols=159  Identities=25%  Similarity=0.274  Sum_probs=133.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +++.|+|++|+..|+++++.+|+++.+++.+|.+|..+|+              +++|+..|+++++++|++..+|+++|
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~l~   74 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQNPLLAEAYSNLG   74 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4567888888888888888888888888888888888887              88888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHH------------------------------------------------------------
Q 010864          214 IAISDRAKMRGRTKEAEELW------------------------------------------------------------  233 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~------------------------------------------------------------  233 (498)
                      .+|..    +|++++|++.+                                                            
T Consensus        75 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (388)
T d1w3ba_          75 NVYKE----RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR  150 (388)
T ss_dssp             HHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred             HHhhh----hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            88877    88888777554                                                            


Q ss_pred             -----------------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH--------
Q 010864          234 -----------------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--------  270 (498)
Q Consensus       234 -----------------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a--------  270 (498)
                                                         ++|+..++++++++|++..++.++|.++...|++++|        
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  230 (388)
T d1w3ba_         151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL  230 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence                                               2367888999999999999999999999999999876        


Q ss_pred             ----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          271 ----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       271 ----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                                      +...|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus       231 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                            3457888999999999999999999999999999999887

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=178.40  Aligned_cols=167  Identities=10%  Similarity=0.068  Sum_probs=151.5

Q ss_pred             hcHHHHHHHHHHhhhcch----------hhHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864          114 EQNNAAMELINSVTGVDE----------EGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP  182 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~----------~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~  182 (498)
                      +..++|+..+.+++..+.          ..+...| ++++|+..|+++++++|++..+|+++|.++..+|+         
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~---------  127 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD---------  127 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---------
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc---------
Confidence            556788888888888772          2334445 59999999999999999999999999999999999         


Q ss_pred             chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                           +++|+..|.++++++|++..+|+++|.++..    +|++++|+       .+|+++++++|.+..+|+++|.++.
T Consensus       128 -----~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al-------~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         128 -----PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             -----CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHH-------HHHHHHHHHCCccHHHHHHHHHHHH
Confidence                 9999999999999999999999999999999    99999999       6999999999999999999999999


Q ss_pred             HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      ..+.+    ...+.+++|+..|.++++++|++..+|+++|.++...+
T Consensus       192 ~~~~~----~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         192 NTTGY----NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HTTCS----CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             Hcccc----chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            99886    45566799999999999999999999999999987665

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.9e-17  Score=163.26  Aligned_cols=180  Identities=11%  Similarity=0.061  Sum_probs=162.6

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH-HHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-YNW  212 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~-~~l  212 (498)
                      ....|++++|+.+|+++++.+|++..+|+.+|.++...++            .++++|+..+.++++++|++..++ +.+
T Consensus        83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~------------~~~~~a~~~~~~al~~~~~~~~~~~~~~  150 (334)
T d1dcea1          83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE------------PNWARELELCARFLEADERNFHCWDYRR  150 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS------------CCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc------------ccHHHHHHHHHHHHhhCchhhhhhhhHH
Confidence            3456779999999999999999999999999999988775            238999999999999999999886 577


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------------------
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----------------------  270 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----------------------  270 (498)
                      |.++..    .+++++|+       ..++++++++|++..+|+++|.++..+|++++|                      
T Consensus       151 ~~~~~~----~~~~~~Al-------~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  219 (334)
T d1dcea1         151 FVAAQA----AVAPAEEL-------AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF  219 (334)
T ss_dssp             HHHHHT----CCCHHHHH-------HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHh----ccccHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence            888888    99999999       699999999999999999999999999999865                      


Q ss_pred             --------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010864          271 --------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT  318 (498)
Q Consensus       271 --------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~  318 (498)
                                                      +...+++++|+..|.+++..+|++..+++++|.+|..+|+        
T Consensus       220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------  291 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY--------  291 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG--------
T ss_pred             HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC--------
Confidence                                            2336899999999999999999999999999999999999        


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          319 VNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR  355 (498)
Q Consensus       319 ~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~  355 (498)
                                 +.+|..+|+++++++|++..|...+.
T Consensus       292 -----------~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         292 -----------EKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             -----------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHCcccHHHHHHHH
Confidence                       99999999999999999987776653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.7e-17  Score=159.31  Aligned_cols=155  Identities=16%  Similarity=0.131  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      ..++.+|..++..|+              +++|+..|+++++.+|+++.+|+++|.++..    +|++++|+       .
T Consensus        20 ~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~~~~~~A~-------~   74 (323)
T d1fcha_          20 PQPFEEGLRRLQEGD--------------LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE----NEQELLAI-------S   74 (323)
T ss_dssp             SSHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH-------H
Confidence            456899999999999              9999999999999999999999999999999    99999999       6


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------------------------------------------
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------------------------------  270 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------------------------------------------  270 (498)
                      .|.++++++|++..++.++|.+|..+|++++|                                                
T Consensus        75 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (323)
T d1fcha_          75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE  154 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred             HHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence            99999999999999999999999999998765                                                


Q ss_pred             ---------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010864          271 ---------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE  323 (498)
Q Consensus       271 ---------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~  323 (498)
                                                 +...|++++|+.+|++++.++|+++.+|+++|.+|..+|+             
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------  221 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-------------  221 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc-------------
Confidence                                       1235677788888888888888888888888888888887             


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV  357 (498)
Q Consensus       324 ~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~  357 (498)
                            +.+|..+|+++++++|++......++.+
T Consensus       222 ------~~~A~~~~~~al~~~p~~~~a~~~lg~~  249 (323)
T d1fcha_         222 ------SEEAVAAYRRALELQPGYIRSRYNLGIS  249 (323)
T ss_dssp             ------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ------chhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence                  8999999999999999988655555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=9.8e-17  Score=151.18  Aligned_cols=139  Identities=17%  Similarity=0.099  Sum_probs=127.3

Q ss_pred             hccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERN----PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW  212 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l  212 (498)
                      ..+.+.|+..+++++...    +..+.+++++|.+|..+|+              +++|+..|+++++++|+++.+|+++
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~--------------~~~A~~~~~~al~l~p~~~~a~~~l   77 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYL   77 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhccCCCCHHHHhhh
Confidence            355667777888887643    3456799999999999999              9999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      |.++..    +|++++|+       ..|+++++++|+++.+++++|.+|..+|++          ++|+..|+++++++|
T Consensus        78 g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p  136 (259)
T d1xnfa_          78 GIYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAHLNRGIALYYGGRD----------KLAQDDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHH----TTCHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred             chHHHH----HHHHHHhh-------hhhhHHHHHHhhhhhhHHHHHHHHHHHhhH----------HHHHHHHHHHHhhcc
Confidence            999999    99999999       699999999999999999999999999999          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcch
Q 010864          293 DFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~  310 (498)
                      ++......++.++...+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         137 NDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCH
T ss_pred             ccHHHHHHHHHHHHHhhh
Confidence            999999999988888775

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-16  Score=141.22  Aligned_cols=144  Identities=11%  Similarity=0.069  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864          116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY  195 (498)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  195 (498)
                      +.+++.++++...     +...|+|++|+..|.+   +.+.++.+|+++|.+|..+|+              +++|+.+|
T Consensus         2 ~~~~~~l~~~g~~-----~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--------------~~~A~~~~   59 (192)
T d1hh8a_           2 LVEAISLWNEGVL-----AADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--------------MTEAEKAF   59 (192)
T ss_dssp             HHHHHHHHHHHHH-----HHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----HHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--------------chhHHHHH
Confidence            3466777776443     4778999999999986   467789999999999999999              99999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC----------------CHHHHHHHHH
Q 010864          196 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----------------SPQALNNWGL  259 (498)
Q Consensus       196 ~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~----------------~~~a~~~lg~  259 (498)
                      ++|++++|+++.+|+++|.++..    +|++++|++       .|++|+...+.                ..++++++|.
T Consensus        60 ~kAl~ldp~~~~a~~~~g~~~~~----~g~~~~A~~-------~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          60 TRSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIK-------DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH-------HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHh----hccHHHHHH-------HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            99999999999999999999999    999999995       55555554332                2588999999


Q ss_pred             HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      ++..+|++          ++|+..|++|+++.|+........+
T Consensus       129 ~~~~~~~~----------~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_         129 MYAKKEEW----------KKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             HHHHTTCH----------HHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHCCCH----------HHHHHHHHHHHhcCCCcchHHHHHH
Confidence            99999999          9999999999999988544444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.6e-16  Score=130.43  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      .-+...|..++..|+              |++|+..|+++|+++|+++.+|+++|.+|..    +|++++|+       .
T Consensus         4 ~~l~~~g~~~~~~g~--------------~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~   58 (117)
T d1elwa_           4 NELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY-------E   58 (117)
T ss_dssp             HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcchhhhhcccccccc----cccccccc-------h
Confidence            346778999999999              9999999999999999999999999999999    99999999       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL  305 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~  305 (498)
                      .|.++++++|+++.+|+++|.++..+|++          ++|+.+|+++++++|+++.++.+++.+.
T Consensus        59 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          59 DGCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hhhhHHHhccchhhHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999          9999999999999999999999998874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=3.4e-16  Score=135.79  Aligned_cols=130  Identities=21%  Similarity=0.245  Sum_probs=113.8

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +.+.+.|++|+..|+++++++|+++++++++|.++..+++.    .......+.+++|+..|++|++++|+++.+|+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~----~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF----HSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            45688999999999999999999999999999999987651    11123445689999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      .+|..+.+..++...+.+.|++|+.+|+++++++|++..++.+|+.+....+.+
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            999996666778899999999999999999999999999999999987666555

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-15  Score=133.29  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      +.+...|..|+..|+              |++|+.+|+++++++|++..+|+++|.++..    +|++++|+       .
T Consensus        11 ~~l~~~gn~~~~~~~--------------y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~   65 (159)
T d1a17a_          11 EELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------G   65 (159)
T ss_dssp             HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHH-------H
Confidence            446778999999999              9999999999999999999999999999999    99999999       6


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      .|+++++++|++..+|+++|.++..+|++          ++|+.+|+++++++|++..++..++.+....++
T Consensus        66 ~~~kal~~~p~~~~a~~~~g~~~~~~g~~----------~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          66 DATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999          999999999999999999999999888665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-15  Score=135.70  Aligned_cols=142  Identities=15%  Similarity=0.186  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN  239 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~  239 (498)
                      .+++.|..+...|+              |++|++.|.+   +.+.++.+|+|+|.+|..    +|++++|+       .+
T Consensus         7 ~l~~~g~~~~~~~d--------------~~~Al~~~~~---i~~~~~~~~~nlG~~~~~----~g~~~~A~-------~~   58 (192)
T d1hh8a_           7 SLWNEGVLAADKKD--------------WKGALDAFSA---VQDPHSRICFNIGCMYTI----LKNMTEAE-------KA   58 (192)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHT---SSSCCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred             HHHHHHHHHHHCCC--------------HHHHHHHHHh---cCCCCHHHHHHHHHHHHH----cCCchhHH-------HH
Confidence            34578999999999              9999999986   467789999999999999    99999999       69


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC----------------HHHHHHHHH
Q 010864          240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----------------HRAIYNLGT  303 (498)
Q Consensus       240 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~----------------~~a~~~Lg~  303 (498)
                      |++|++++|+++.+|+++|.++.++|++          ++|+..|++|+...+.+                ..+++++|.
T Consensus        59 ~~kAl~ldp~~~~a~~~~g~~~~~~g~~----------~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          59 FTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhccH----------HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999          99999999999875433                578999999


Q ss_pred             HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHH
Q 010864          304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS--VYSSALRLVR  358 (498)
Q Consensus       304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~--~~~~~l~~~~  358 (498)
                      ++..+|+                   +.+|...|.+|+.+.|+..  .+..++..+.
T Consensus       129 ~~~~~~~-------------------~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~  166 (192)
T d1hh8a_         129 MYAKKEE-------------------WKKAEEQLALATSMKSEPRHSKIDKAMECVW  166 (192)
T ss_dssp             HHHHTTC-------------------HHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HHHHCCC-------------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            9999999                   9999999999999988854  5555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=127.40  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=100.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ++..|+|++|+.+|+++|.++|+++.+|+++|.+|..+|+              +++|+..|.++++++|++..+|+++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~g   78 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRKA   78 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc--------------ccccchhhhhHHHhccchhhHHHHHH
Confidence            6789999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ  262 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~  262 (498)
                      .++..    +|++++|+       ..|+++++++|+++.++.+++.+..
T Consensus        79 ~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          79 AALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999    99999999       7999999999999999999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.1e-15  Score=129.98  Aligned_cols=106  Identities=20%  Similarity=0.160  Sum_probs=101.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +++.|+|++|+.+|+++++++|+++.+|+++|.+|..+|+              +++|+..|+++++++|++..+|+++|
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~kal~~~p~~~~a~~~~g   85 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRA   85 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--------------cchHHHHHHHHHHHcccchHHHHHHH
Confidence            6889999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      .++..    +|++++|+       .+|++++.++|++..++..++.+....
T Consensus        86 ~~~~~----~g~~~eA~-------~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          86 ASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999    99999999       699999999999999999998876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=1.7e-15  Score=131.30  Aligned_cols=125  Identities=16%  Similarity=0.196  Sum_probs=107.9

Q ss_pred             CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT---KEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~---~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                      .+++.+.|++|+..|+++++++|+++.+++++|.++..    ++++   .++.+.+++|+..|++|++++|+++.+++++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~----~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            44566679999999999999999999999999999987    5554   4566778999999999999999999999999


Q ss_pred             HHHHHHhcCcchH-HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          258 GLALQELSAIVPA-REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       258 g~~l~~~g~~~~a-~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      |.+|..+|++... ....+++++|+.+|++|++++|++...+.+|+.+....+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            9999999875322 344567899999999999999999999999999865544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.5e-15  Score=137.42  Aligned_cols=118  Identities=18%  Similarity=0.109  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      .+..+...|..|+..|+              |++|+..|++||.++|+++.+|+++|.+|..    +|++++|+      
T Consensus         3 ~a~~l~~~Gn~~~~~g~--------------~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai------   58 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL------   58 (201)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred             hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhh------
Confidence            46778899999999999              9999999999999999999999999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                       .+|++|++++|+++.+|+++|.+|..+|++          ++|+..|++|++++|++...+..+...+...+
T Consensus        59 -~~~~~al~l~p~~~~a~~~lg~~~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          59 -ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             -HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             -HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence             699999999999999999999999999999          99999999999999876554444444444333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.4e-14  Score=139.79  Aligned_cols=185  Identities=10%  Similarity=0.064  Sum_probs=150.9

Q ss_pred             hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864          113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDA  186 (498)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~  186 (498)
                      +.++++|.++|.+++..    +..+++|++|+.+|.+++++.      ++.+.+|.++|.+|..+|+             
T Consensus        30 ~~~~~~Aa~~y~~aa~~----y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~-------------   92 (290)
T d1qqea_          30 SYKFEEAADLCVQAATI----YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------   92 (290)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             cccHHHHHHHHHHHHHH----HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-------------
Confidence            46789999999999887    888999999999999999873      3345789999999999999             


Q ss_pred             hHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864          187 LLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA  260 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~  260 (498)
                       +++|+.+|++++.+.+..      ..++.++|.+|..   ..|++++|++.|++|+..+.+. ...+....++.++|.+
T Consensus        93 -~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~  167 (290)
T d1qqea_          93 -SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN---DLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADL  167 (290)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHH
Confidence             999999999999996654      5788899988854   0599999998777777665531 1122346779999999


Q ss_pred             HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHH
Q 010864          261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS  333 (498)
Q Consensus       261 l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~-------~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A  333 (498)
                      +..+|+|          ++|+..|++++.+.+.+.       ..+.++|.++...++                   +..|
T Consensus       168 ~~~~g~y----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-------------------~~~A  218 (290)
T d1qqea_         168 KALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-------------------AVAA  218 (290)
T ss_dssp             HHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-------------------HHHH
T ss_pred             HHHcChH----------HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-------------------HHHH
Confidence            9999999          999999999999987764       456788888888888                   8899


Q ss_pred             HHHHHHHHhcCCCHH
Q 010864          334 AIYIAAAHALKPSYS  348 (498)
Q Consensus       334 ~~~~~~Al~l~p~~~  348 (498)
                      ..++.++++++|...
T Consensus       219 ~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         219 ARTLQEGQSEDPNFA  233 (290)
T ss_dssp             HHHHHGGGCC-----
T ss_pred             HHHHHHHHHhCCCcc
Confidence            999999999998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=8.7e-15  Score=143.76  Aligned_cols=182  Identities=11%  Similarity=0.014  Sum_probs=146.7

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+..++|+.+|+++|+++|++..+|+.++.++..++.    .+......+.+++|+.+|+++++.+|++..+|+++|.++
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~----~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLET----EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence            3445899999999999999999999999999888776    233345567799999999999999999999999999999


Q ss_pred             HHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864          217 SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQAL-NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD  293 (498)
Q Consensus       217 ~~~~~~~g~--~~eA~~~~~~Al~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~  293 (498)
                      ..    .++  +++|+       ..+.++++++|.+..++ ..+|.++...+.+          ++|+.+++++++++|+
T Consensus       118 ~~----~~~~~~~~a~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----------~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         118 SR----LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNFS  176 (334)
T ss_dssp             HT----CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH----------HHHHHHHHTTTTTTCC
T ss_pred             HH----hccccHHHHH-------HHHHHHHhhCchhhhhhhhHHHHHHHhcccc----------HHHHHHHHHHHHcCCC
Confidence            88    765  67777       79999999999999886 5778899999999          9999999999999999


Q ss_pred             CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      +..+|+++|.++..+|+...+...     .............++.....+.+.+.
T Consensus       177 ~~~a~~~l~~~~~~~~~~~~A~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~  226 (334)
T d1dcea1         177 NYSSWHYRSCLLPQLHPQPDSGPQ-----GRLPENVLLKELELVQNAFFTDPNDQ  226 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSC-----CSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHH-----HHHhHHhHHHHHHHHHHHHHhcchhH
Confidence            999999999999999973222111     11122334444555555566666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=158.88  Aligned_cols=179  Identities=13%  Similarity=0.053  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH---------
Q 010864          142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW---------  212 (498)
Q Consensus       142 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l---------  212 (498)
                      +|+++|++|++++|+++++++++|.+|..+++              +++|   |+++|.++|+.+.++...         
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~--------------l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~   66 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--------------LQDL---YQKMLVTDLEYALDKKVEQDLWNHAFK   66 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH--------------HHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHch--------------HHHH---HHHHHHcChhhHHHHhHHHHHHHHHHH
Confidence            68999999999999999999999999999999              8876   899999999876554332         


Q ss_pred             --HHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH-------
Q 010864          213 --AIAISDR-------------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA-------  270 (498)
Q Consensus       213 --g~~~~~~-------------~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a-------  270 (498)
                        ...+...             ....+...+|...|+.++..|++++.++|++..+++++|.++.+.|+++.|       
T Consensus        67 ~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  146 (497)
T d1ya0a1          67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS  146 (497)
T ss_dssp             HHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHH
T ss_pred             HHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH
Confidence              2222211             011234567788888999999999999999999999999888888888765       


Q ss_pred             ---------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHH
Q 010864          271 ---------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAI  335 (498)
Q Consensus       271 ---------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~  335 (498)
                                     +...+++++|+.+|++|++++|+++.+|++||.++...|+                   +.+|+.
T Consensus       147 l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-------------------~~~A~~  207 (497)
T d1ya0a1         147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-------------------HLTTIF  207 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-------------------HHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-------------------HHHHHH
Confidence                           4567889999999999999999999999999999999999                   899999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHH
Q 010864          336 YIAAAHALKPSYSVYSSALRL  356 (498)
Q Consensus       336 ~~~~Al~l~p~~~~~~~~l~~  356 (498)
                      +|.+|+.++|.++....+|..
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHH
Confidence            999999999999977666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-14  Score=119.54  Aligned_cols=117  Identities=10%  Similarity=0.024  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010864          162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE  241 (498)
Q Consensus       162 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~  241 (498)
                      .+++..+...++              +++|++.|++++.++|+++.+++|+|.++..    .++...    +++|+..|+
T Consensus         3 ~~l~n~~~~~~~--------------l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~----s~~~~d----~~~Ai~~l~   60 (122)
T d1nzna_           3 EAVLNELVSVED--------------LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDD----IRKGIVLLE   60 (122)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHH----HHHHHHHHH
T ss_pred             HHHHHHhcCHHH--------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcchHH----HHHHHHHHH
Confidence            356777778888              9999999999999999999999999999987    666543    345668999


Q ss_pred             HHHhcCCCC--HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864          242 KAVQLNWNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE  310 (498)
Q Consensus       242 ~Al~l~P~~--~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~  310 (498)
                      +++..+|.+  ..++++||.+|.++|++          ++|+.+|+++|+++|++..+...++.+...+.+
T Consensus        61 ~~l~~~~~~~~~~~~~~Lg~~y~~~g~~----------~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          61 ELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCchHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            999998765  46999999999999999          999999999999999999999999988776553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.2e-14  Score=123.75  Aligned_cols=118  Identities=16%  Similarity=0.128  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------------HDAFYNWAIAISDRAKM  222 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---------------~~a~~~lg~~~~~~~~~  222 (498)
                      +..+...|..++..|+              |++|+..|++++.+.|..               ..+|.|+|.+|.+    
T Consensus        13 a~~l~~~G~~~~~~~~--------------~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k----   74 (170)
T d1p5qa1          13 STIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK----   74 (170)
T ss_dssp             HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh----
Confidence            4567889999999999              999999999999997753               3678899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      +|++++|+       ..+++++.++|+++.+++++|.+|..+|++          ++|+.+|+++++++|+++.+...++
T Consensus        75 ~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          75 LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hhhccccc-------chhhhhhhccccchhhhHHHHHHHHHhhhH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       699999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010864          303 TVLYGLAE  310 (498)
Q Consensus       303 ~~~~~~g~  310 (498)
                      .++..+++
T Consensus       138 ~~~~~~~~  145 (170)
T d1p5qa1         138 VCQQRIRR  145 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887775

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=5.8e-15  Score=133.50  Aligned_cols=108  Identities=20%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ++..|+|++|+..|+++|.++|+++.+|+++|.+|..+|+              +++|+.+|++|++++|++..+|+++|
T Consensus        14 ~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--------------~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--------------hhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            7889999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA  266 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  266 (498)
                      .+|..    +|++++|+       ..|+++++++|++...+...+..+...++
T Consensus        80 ~~~~~----l~~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          80 QCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            99999    99999999       57788887777655444444444443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-14  Score=119.73  Aligned_cols=110  Identities=12%  Similarity=0.015  Sum_probs=98.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--HHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYN  211 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--~~a~~~  211 (498)
                      +...+++++|.+.|++++.++|+++++++++|.++...++           .+++++|+..|++++..+|+.  ..++++
T Consensus         9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----------~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~   77 (122)
T d1nzna_           9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            4567999999999999999999999999999999986544           233889999999999998865  469999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      ||.+|..    +|++++|+       .+|+++++++|++..++..++.+..+++
T Consensus        78 Lg~~y~~----~g~~~~A~-------~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          78 LAVGNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HhhhHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999    99999999       7999999999999999999999887664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.52  E-value=1.5e-13  Score=119.73  Aligned_cols=117  Identities=17%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------------HDAFYNWAIAISDRAKM  222 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----------------~~a~~~lg~~~~~~~~~  222 (498)
                      ..+...|..++..|+              |.+|+..|++|+.+.+..                ..++.|+|.+|..    
T Consensus        18 ~~~~~~G~~~f~~~~--------------y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~----   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK----   79 (153)
T ss_dssp             HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH----
Confidence            446678999999999              999999999999986542                2478899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      +|++++|+       ..|+++++++|++..+|+++|.+|..+|++          ++|+.+|+++++++|++..+..+++
T Consensus        80 l~~~~~Al-------~~~~~al~~~p~~~ka~~~~g~~~~~lg~~----------~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          80 NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------EEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hcccchhh-------hhhhccccccchhhhhhHHhHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       699999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010864          303 TVLYGLAE  310 (498)
Q Consensus       303 ~~~~~~g~  310 (498)
                      .+...+.+
T Consensus       143 ~~~~kl~~  150 (153)
T d2fbna1         143 LCVNKLKE  150 (153)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.5e-14  Score=118.82  Aligned_cols=117  Identities=16%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT  237 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al  237 (498)
                      +..+.++|..++..|+              |++|+.+|+++++++|++..+++++|.+|..    +|++++|+       
T Consensus         4 a~~~k~~G~~~~~~~~--------------y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------   58 (128)
T d1elra_           4 ALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR-------   58 (128)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHH-------
Confidence            4567899999999999              9999999999999999999999999999999    99999999       


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      ..|+++++++|++..++.++|.+|..+|+.   +...+++++|+.+|++++..+++ +.....+..
T Consensus        59 ~~~~~al~l~~~~~~~~~~~a~~~~~lg~~---~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          59 ELCEKAIEVGRENREDYRQIAKAYARIGNS---YFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            688888888888877666666666666665   55566669999999999999876 555555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=1.4e-13  Score=113.50  Aligned_cols=95  Identities=14%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864          159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK  238 (498)
Q Consensus       159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~  238 (498)
                      +.++++|.++...|+              +++|+..|+++++++|+++.+|+++|.++..    .|++++|+       .
T Consensus        17 ~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~-------~   71 (112)
T d1hxia_          17 ENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------I   71 (112)
T ss_dssp             SCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred             HHHHHHHHHHHHHhh--------------hHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhh-------c
Confidence            346889999999999              9999999999999999999999999999999    99999999       7


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864          239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI  288 (498)
Q Consensus       239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al  288 (498)
                      +|+++++++|++..+|++||.+|..+|++          ++|+++|++.|
T Consensus        72 ~~~~al~~~p~~~~a~~~la~~y~~~g~~----------~~A~~~l~~~l  111 (112)
T d1hxia_          72 ALNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred             ccccccccccccccchHHHHHHHHHCCCH----------HHHHHHHHHHh
Confidence            99999999999999999999999999999          99999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=1.7e-13  Score=121.28  Aligned_cols=116  Identities=18%  Similarity=0.139  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHc
Q 010864          160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----------------CPTLHDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l----------------~p~~~~a~~~lg~~~~~~~~~~  223 (498)
                      .+...|..++..|+              |.+|+..|++++.+                +|....++.|+|.++.+    +
T Consensus        29 ~~~~~~~~~~~~~~--------------y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~   90 (169)
T d1ihga1          29 DLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK----M   90 (169)
T ss_dssp             HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh----h
Confidence            35678999999999              99999999999864                56677889999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT  303 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~  303 (498)
                      |++++|+       ..|.++++++|+++.+|+++|.+|..+|++          ++|+..|+++++++|++..+...|+.
T Consensus        91 ~~~~~Ai-------~~~~~al~~~p~~~~a~~~~g~~~~~l~~~----------~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          91 SDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             TCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccchhh-------hhhhhhhhhhhhhhhHHHhHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999       699999999999999999999999999999          99999999999999999999999999


Q ss_pred             HHHHcch
Q 010864          304 VLYGLAE  310 (498)
Q Consensus       304 ~~~~~g~  310 (498)
                      ++..+..
T Consensus       154 ~~~~l~~  160 (169)
T d1ihga1         154 VKQKIKA  160 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9877664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8e-13  Score=117.20  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=102.1

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA  198 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A  198 (498)
                      +++.|+|++|+..|+++|.+.|..               ..++.++|.+|..+|+              |++|+..++++
T Consensus        23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~--------------~~~A~~~~~~a   88 (170)
T d1p5qa1          23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------------FSAAIESCNKA   88 (170)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhh--------------cccccchhhhh
Confidence            688999999999999999998754               3568899999999999              99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       199 l~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      |.++|++..+++++|.+|..    +|++++|+       ..|+++++++|++..+...++.++..+++.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999    99999999       799999999999999999999999888776

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.48  E-value=8.3e-13  Score=116.77  Aligned_cols=118  Identities=16%  Similarity=0.123  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKM  222 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~~~~~  222 (498)
                      +..+...|..++..|+              |.+|+..|++|+.+.+.               ...++.|+|.+|..    
T Consensus        15 a~~~~e~G~~~~~~~~--------------~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~----   76 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGK--------------YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----   76 (168)
T ss_dssp             HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH----
Confidence            4567889999999999              99999999999987443               23568899999999    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864          223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG  302 (498)
Q Consensus       223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg  302 (498)
                      +|++.+|+       .+|++++.++|++..+++++|.+|..+|++          ++|+..|+++++++|++..++..++
T Consensus        77 l~~~~~Ai-------~~~~~al~l~p~~~~a~~~~~~~~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1          77 LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAKGDFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hhhcccch-------hhhhhhhhcccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999       699999999999999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHcch
Q 010864          303 TVLYGLAE  310 (498)
Q Consensus       303 ~~~~~~g~  310 (498)
                      .+...++.
T Consensus       140 ~~~~~~~~  147 (168)
T d1kt1a1         140 MCQKKAKE  147 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99877765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.47  E-value=5.1e-13  Score=116.37  Aligned_cols=123  Identities=20%  Similarity=0.200  Sum_probs=105.7

Q ss_pred             hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhcCcCCC
Q 010864          114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED----------------YDALYNWALVLQESADNVSL  177 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~----------------~~a~~~lg~~~~~~g~~~~~  177 (498)
                      ...+.|..+.....     .+++.|+|.+|+..|++++.+.+..                ..++.|+|.+|..+|+    
T Consensus        12 e~~~~a~~~~~~G~-----~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~----   82 (153)
T d2fbna1          12 EKVQSAFDIKEEGN-----EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD----   82 (153)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc----
Confidence            34444444444332     3578999999999999999876543                2468899999999999    


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864          178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW  257 (498)
Q Consensus       178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l  257 (498)
                                +++|+..|+++|+++|++..+|+++|.++..    +|++++|+       ..|+++++++|++..+..++
T Consensus        83 ----------~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~-------~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          83 ----------YPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             ----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHH
T ss_pred             ----------cchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHH
Confidence                      9999999999999999999999999999999    99999999       79999999999999999999


Q ss_pred             HHHHHHhcC
Q 010864          258 GLALQELSA  266 (498)
Q Consensus       258 g~~l~~~g~  266 (498)
                      +.+..++.+
T Consensus       142 ~~~~~kl~~  150 (153)
T d2fbna1         142 ELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.45  E-value=4.7e-13  Score=110.21  Aligned_cols=95  Identities=15%  Similarity=0.003  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864          207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA  286 (498)
Q Consensus       207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~  286 (498)
                      ..++++|.++..    .|++.+|+       ..|++++..+|+++.+|+++|.++..+|++          ++|+.+|++
T Consensus        17 ~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~   75 (112)
T d1hxia_          17 ENPMEEGLSMLK----LANLAEAA-------LAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNH   75 (112)
T ss_dssp             SCHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhhhHHHH-------HHHhhhcccccccchhhhhhhhhhhhhhhH----------HHhhccccc
Confidence            346889999999    99999999       799999999999999999999999999999          999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864          287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH  341 (498)
Q Consensus       287 Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  341 (498)
                      +++++|++..++++||.+|..+|+                   +.+|..++++.+
T Consensus        76 al~~~p~~~~a~~~la~~y~~~g~-------------------~~~A~~~l~~~l  111 (112)
T d1hxia_          76 ARMLDPKDIAVHAALAVSHTNEHN-------------------ANAALASLRAWL  111 (112)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHCCC-------------------HHHHHHHHHHHh
Confidence            999999999999999999999999                   899999998875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=2.1e-12  Score=114.17  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED---------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA  198 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A  198 (498)
                      +++.|+|.+|+..|.+++.+.+..               ..++.|+|.+|..+|+              +++|+..|+++
T Consensus        25 ~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------------~~~Ai~~~~~a   90 (168)
T d1kt1a1          25 YFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------------YTKAVECCDKA   90 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh--------------cccchhhhhhh
Confidence            688999999999999999865432               3568899999999999              99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       199 l~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +.++|++..+|+++|.++..    +|++++|+       ..|+++++++|++..++..++.+....+++
T Consensus        91 l~l~p~~~~a~~~~~~~~~~----l~~~~~A~-------~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999    99999999       699999999999999999999998888766

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=7e-13  Score=117.27  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=100.2

Q ss_pred             HHhhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIER----------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE  197 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~  197 (498)
                      ++..|+|.+|+..|.++|.+                +|....++.++|.+|..+|+              +++|+..|++
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------------~~~Ai~~~~~  102 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDSCLE  102 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc--------------cchhhhhhhh
Confidence            56788999999999888754                46677889999999999999              9999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864          198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI  267 (498)
Q Consensus       198 Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  267 (498)
                      +|+++|+++.+|+++|.+|..    +|++++|+       ..|+++++++|++..+...++.+..++...
T Consensus       103 al~~~p~~~~a~~~~g~~~~~----l~~~~~A~-------~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999    99999999       699999999999999999999998887766

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.7e-13  Score=111.22  Aligned_cols=112  Identities=12%  Similarity=0.065  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864          206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR  285 (498)
Q Consensus       206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~  285 (498)
                      +..+.++|..++.    .|+|++|+       .+|+++++++|++..+++++|.+|.++|++          ++|+..|+
T Consensus         4 a~~~k~~G~~~~~----~~~y~~Ai-------~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~   62 (128)
T d1elra_           4 ALKEKELGNDAYK----KKDFDTAL-------KHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCE   62 (128)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcccHHHHHhHHHHHHHcCch----------HHHHHHHH
Confidence            3467799999999    99999999       699999999999999999999999999999          99999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864          286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY  350 (498)
Q Consensus       286 ~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~  350 (498)
                      ++|+++|++...+.++|.+|..+|........            +.+|+.+|.+++..+++....
T Consensus        63 ~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~kal~~~~~~~~~  115 (128)
T d1elra_          63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEK------------YKDAIHFYNKSLAEHRTPDVL  115 (128)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCHHHH
Confidence            99999999887777777766666653333322            899999999999999876643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.6e-13  Score=139.22  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=97.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      .+.|+.|+..|.+++.++|++..++.++|.++...|+              +++|+..|.+++.++|  ..+++++|.++
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~~--~~~~~~LG~l~  162 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYIC--QHCLVHLGDIA  162 (497)
T ss_dssp             HHHHHHHHHHHTC---------------------------------------------CCHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC--------------HHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence            5677788888888888999999999999999999999              9999999999998876  47899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR  296 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~  296 (498)
                      ..    +|++++|+       .+|++|++++|++..++++||.++...|++          .+|+.+|.+|+.++|.++.
T Consensus       163 ~~----~~~~~~A~-------~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~----------~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         163 RY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             HH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHSSSBCCHH
T ss_pred             HH----cccHHHHH-------HHHHHHHHHCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCHH
Confidence            99    99999998       799999999999999999999999999999          9999999999999999999


Q ss_pred             HHHHHHHHHHHcch
Q 010864          297 AIYNLGTVLYGLAE  310 (498)
Q Consensus       297 a~~~Lg~~~~~~g~  310 (498)
                      ++.||+.++.+..+
T Consensus       222 a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         222 ASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999876653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=5.1e-12  Score=110.11  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=95.2

Q ss_pred             HHHHHHH--HHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHc
Q 010864          158 YDALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------------HDAFYNWAIAISDRAKMR  223 (498)
Q Consensus       158 ~~a~~~l--g~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------------~~a~~~lg~~~~~~~~~~  223 (498)
                      +.++..+  |..++..|+              |++|+..|++||+++|+.            +.+|+|+|.+|..    +
T Consensus         7 a~a~~~l~~g~~~~~~g~--------------y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----l   68 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----L   68 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----c
Confidence            3455544  888889999              999999999999998764            4689999999999    9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864          224 GRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF  294 (498)
Q Consensus       224 g~~~eA~~~~~~Al~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~  294 (498)
                      |++++|++.+++|+..+.+....+++.    ..+++++|.+|..+|++          ++|+.+|++|+++.|+.
T Consensus        69 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~----------eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          69 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHC
T ss_pred             CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHhhHHh
Confidence            999999999999999999988877653    45789999999999999          99999999999996654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-11  Score=118.25  Aligned_cols=119  Identities=11%  Similarity=-0.063  Sum_probs=87.6

Q ss_pred             hhHHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--
Q 010864          132 EGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--  204 (498)
Q Consensus       132 ~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--  204 (498)
                      ......|++++|+.+|+++++..|++     ..++..+|.+|..+|+              +++|+..|++++++.+.  
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE--------------LTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHhhc
Confidence            33567999999999999999999987     4588999999999999              99999999999998543  


Q ss_pred             ----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCcc
Q 010864          205 ----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWNSPQALNNWGLALQELSAIV  268 (498)
Q Consensus       205 ----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~  268 (498)
                          ...++.+++.++..    .|++..+...+.+++..+..... ..+....++..+|.++...|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  150 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD  150 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchh
Confidence                24678899999999    99999999877665544332211 11112234444555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.8e-11  Score=117.55  Aligned_cols=185  Identities=15%  Similarity=0.063  Sum_probs=136.4

Q ss_pred             hhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 010864          112 LAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQ  169 (498)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~  169 (498)
                      ..+.+++|...|.+++...                +.++.++|++++|+.+|++++.+.+..      ..++.++|.+|.
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            3455666666666555542                344778999999999999999987655      678899999986


Q ss_pred             H-hcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864          170 E-SADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK  242 (498)
Q Consensus       170 ~-~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~  242 (498)
                      . .|+              +++|+..|++|+++.+.      ...++.++|.++..    +|++.+|+       ..|++
T Consensus       129 ~~~~~--------------~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~-------~~~~~  183 (290)
T d1qqea_         129 NDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS-------DIYSK  183 (290)
T ss_dssp             HTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHH
T ss_pred             hHHHH--------------HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHH-------HHHHH
Confidence            6 588              99999999999998432      35679999999999    99999999       57777


Q ss_pred             HHhcCCCCH-------HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHcch
Q 010864          243 AVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-----IYNLGTVLYGLAE  310 (498)
Q Consensus       243 Al~l~P~~~-------~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a-----~~~Lg~~~~~~g~  310 (498)
                      ++...+.+.       ..+.+.|.++...|++          ..|...|+++++++|.+...     +..|..++.... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~----------~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d-  252 (290)
T d1qqea_         184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD-  252 (290)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC---------HHHHHHHHHHHHTTC-
T ss_pred             HHHhCccchhhhhhHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC-
Confidence            877776543       4578899999999999          99999999999999876643     344444443321 


Q ss_pred             hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                                      .+.+.+|+.+|.++..++|...
T Consensus       253 ----------------~e~~~eai~~y~~~~~lD~~~~  274 (290)
T d1qqea_         253 ----------------SEQLSEHCKEFDNFMRLDKWKI  274 (290)
T ss_dssp             ----------------TTTHHHHHHHHTTSSCCCHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHhhcCHHHH
Confidence                            1117889999988888876443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=96.64  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864          205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF  284 (498)
Q Consensus       205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~  284 (498)
                      .++-++++|.++.+    .|+|.+|+..|++|++.........++...++++||.++.++|++          ++|+.+|
T Consensus         4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~----------~~A~~~y   69 (95)
T d1tjca_           4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLT   69 (95)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred             cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh----------HHHHHHH
Confidence            35668899999999    999999997555555554443333445588999999999999999          9999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          285 RAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       285 ~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      +++|+++|+++.+++|++.+...++
T Consensus        70 ~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          70 KKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998765543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.5e-11  Score=94.98  Aligned_cols=84  Identities=14%  Similarity=0.045  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHDAFYNWAIAISDRAKMRGRTKEA  229 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-------~~~a~~~lg~~~~~~~~~~g~~~eA  229 (498)
                      .++-++.+|.++++.|+              |.+|+..|++|+++.|.       ...++++||.++..    +|++++|
T Consensus         4 saddc~~lG~~~~~~g~--------------y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A   65 (95)
T d1tjca_           4 TAEDSFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA   65 (95)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHH
Confidence            35678999999999999              99999999999999554       36899999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       230 ~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      +       ..|+++++++|+++.+++|++.+...++
T Consensus        66 ~-------~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          66 L-------LLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             H-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9       6999999999999999999998877664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.20  E-value=4.7e-11  Score=103.83  Aligned_cols=114  Identities=18%  Similarity=0.076  Sum_probs=90.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864          134 RSRQRILTFAAKRYANAIERNPED------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL  201 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l  201 (498)
                      ++..|+|++|+..|+++|+++|+.            +.+|.++|.+|..+|+              |++|+..|++++++
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------------~~~A~~~~~~al~~   84 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------------FDEALHSADKALHY   84 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------------cchhhHhhhhhhhc
Confidence            567899999999999999998865            4689999999999999              99999999999988


Q ss_pred             CCC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          202 CPT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       202 ~p~-----------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      .|.           ...+++++|.+|..    +|++++|++.|++|+..+.+.-...+........++..+.++|
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence            542           24578999999999    9999999976666666655444333444556666666665554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=9.1e-10  Score=106.19  Aligned_cols=182  Identities=8%  Similarity=-0.044  Sum_probs=122.9

Q ss_pred             hcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCCC
Q 010864          114 EQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTS  181 (498)
Q Consensus       114 ~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~~  181 (498)
                      +..+++..++.+++...           ......+|+++.|...|++++...|.+. .+|..++......+.        
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~--------  149 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------  149 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC--------
Confidence            34456666666665431           1223356777777777777777777654 367777777777777        


Q ss_pred             CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864          182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL  261 (498)
Q Consensus       182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l  261 (498)
                            ++.|...|+++++..|.+...|...+.....   ..|+.+.|.       ..|++++..+|+++..|..++..+
T Consensus       150 ------~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~---~~~~~~~a~-------~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         150 ------IKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAF-------KIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             ------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---hccCHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHH
Confidence                  7777777777777777777777776665432   046666666       577777777777777777777777


Q ss_pred             HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHH
Q 010864          262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  337 (498)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~----~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~  337 (498)
                      ...|++          +.|...|++|++..|.+    ..+|..........|+                   ...+...+
T Consensus       214 ~~~g~~----------~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~-------------------~~~~~~~~  264 (308)
T d2onda1         214 SHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-------------------LASILKVE  264 (308)
T ss_dssp             HTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-------------------HHHHHHHH
T ss_pred             HHcCCh----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHH
Confidence            777777          77778888887765533    3456666665566666                   56677777


Q ss_pred             HHHHhcCCCHH
Q 010864          338 AAAHALKPSYS  348 (498)
Q Consensus       338 ~~Al~l~p~~~  348 (498)
                      +++.++.|+..
T Consensus       265 ~r~~~~~~~~~  275 (308)
T d2onda1         265 KRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHCcccc
Confidence            77777777664

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=5e-10  Score=108.09  Aligned_cols=158  Identities=11%  Similarity=0.018  Sum_probs=141.8

Q ss_pred             hhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 010864          136 RQRILTFAAKRYANAIER-NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWA  213 (498)
Q Consensus       136 ~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~a~~~lg  213 (498)
                      ..+.+++|...|+++++. .|.+...|..++.++..+|+              +++|...|++++...|.+. .+|..++
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~--------------~~~a~~i~~~~l~~~~~~~~~~w~~~~  141 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYM  141 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            346678999999999974 79999999999999999999              9999999999999999764 5789999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      .....    .|+++.|.       ..|.++++..|.+...+...+..... .|+.          +.|...|++++...|
T Consensus       142 ~~~~~----~~~~~~ar-------~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~----------~~a~~i~e~~l~~~p  200 (308)
T d2onda1         142 KFARR----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYG  200 (308)
T ss_dssp             HHHHH----HHCHHHHH-------HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHT
T ss_pred             HHHHH----cCChHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhhh
Confidence            99888    89998888       68999999999999999999987654 4677          999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       293 ~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      +++..|...+..+...|+                   +..|...|++++...|.+
T Consensus       201 ~~~~~w~~y~~~~~~~g~-------------------~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         201 DIPEYVLAYIDYLSHLNE-------------------DNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             TCHHHHHHHHHHHHTTCC-------------------HHHHHHHHHHHHHSSSSC
T ss_pred             hhHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHhCCCC
Confidence            999999999999999998                   889999999999976643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.06  E-value=8.5e-11  Score=111.40  Aligned_cols=134  Identities=11%  Similarity=-0.043  Sum_probs=115.3

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      ..+.|++++|+..|+++++.+|+++.++.++|.+|...|+              +++|++.|+++++++|++..++.+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------------~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3568999999999999999999999999999999999999              99999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          214 IAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      .++..    .+...++.       ..+.+.. ..+|.....+...+.++...|++          ++|+..++++.++.|
T Consensus        72 ~ll~a----~~~~~~a~-------~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~----------~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          72 HLVKA----AQARKDFA-------QGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHH----HHHHHHHT-------TSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCC
T ss_pred             HHHHh----ccccHHHH-------HHhhhhhcccCchHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCC
Confidence            99877    65555554       3333322 33566778888899999999999          999999999999999


Q ss_pred             CCHHHHHHHH
Q 010864          293 DFHRAIYNLG  302 (498)
Q Consensus       293 ~~~~a~~~Lg  302 (498)
                      +.+..+++.+
T Consensus       131 ~~~~~~~~~~  140 (264)
T d1zbpa1         131 EKGFLANDTS  140 (264)
T ss_dssp             CCCEEETTEE
T ss_pred             CCCccccccC
Confidence            9887765544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=5.4e-09  Score=92.81  Aligned_cols=126  Identities=13%  Similarity=-0.084  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      ..+++++.|..+...|+              +++|+..|.+|+.+.++.....++           .+.+-         
T Consensus        10 ~f~~~~~~g~~~~~~g~--------------~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w~---------   55 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGR--------------FEQASRHLSAALREWRGPVLDDLR-----------DFQFV---------   55 (179)
T ss_dssp             HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTH---------
T ss_pred             HHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcccccccCc-----------chHHH---------
Confidence            35788999999999999              999999999999998876433222           11111         


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhcc
Q 010864          237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG  316 (498)
Q Consensus       237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~  316 (498)
                         +.....+.+....++.+++.++..+|++          ++|+.+++++++++|.+..+|.+|+.+|..+|+      
T Consensus        56 ---~~~r~~l~~~~~~a~~~la~~~~~~g~~----------~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr------  116 (179)
T d2ff4a2          56 ---EPFATALVEDKVLAHTAKAEAEIACGRA----------SAVIAELEALTFEHPYREPLWTQLITAYYLSDR------  116 (179)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC------
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHCCCc----------hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC------
Confidence               1222334445678899999999999999          999999999999999999999999999999999      


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHH-------HhcCCCHH
Q 010864          317 GTVNPREVSPNELYSQSAIYIAAA-------HALKPSYS  348 (498)
Q Consensus       317 ~~~~~~~~~~~~~~~~A~~~~~~A-------l~l~p~~~  348 (498)
                                   +.+|+.+|+++       +-++|...
T Consensus       117 -------------~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2         117 -------------QSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             -------------HHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence                         77777777776       56777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.90  E-value=8.4e-10  Score=104.40  Aligned_cols=123  Identities=11%  Similarity=0.014  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864          186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS  265 (498)
Q Consensus       186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g  265 (498)
                      |++++|+..|+++++.+|++..++.+||.+|..    .|++++|+       +.|+++++++|++..++.+++.++...+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~-------~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERAD-------EQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            349999999999999999999999999999999    99999999       6999999999999999999999998887


Q ss_pred             CcchHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          266 AIVPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       266 ~~~~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      ..          +++...+.+...+ +|+....+...+.++...|+                   +.+|...+.++.++.
T Consensus        79 ~~----------~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd-------------------~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          79 AR----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-------------------YEQVSELALQIEELR  129 (264)
T ss_dssp             HH----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHC
T ss_pred             cc----------HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC-------------------HHHHHHHHHHHHhcC
Confidence            77          6665555544333 56667778888999999998                   899999999998888


Q ss_pred             CCHH
Q 010864          345 PSYS  348 (498)
Q Consensus       345 p~~~  348 (498)
                      |+..
T Consensus       130 p~~~  133 (264)
T d1zbpa1         130 QEKG  133 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.88  E-value=6.8e-08  Score=90.11  Aligned_cols=176  Identities=17%  Similarity=0.222  Sum_probs=103.5

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA  213 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg  213 (498)
                      +...+++.+|+.+|+++.+.  ++++++++||.+|..-.. +         ..++..|...|+++...  .++.+..++|
T Consensus        12 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~-~---------~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_          12 SYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQG-V---------EKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-S---------CCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-c---------chhHHHHHHhhcccccc--cccchhhccc
Confidence            35577888888888888764  578888888888876111 0         01266666666665432  3455555555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH----------------------------------------------------------
Q 010864          214 IAISDRAKMRGRTKEAEELWKQ----------------------------------------------------------  235 (498)
Q Consensus       214 ~~~~~~~~~~g~~~eA~~~~~~----------------------------------------------------------  235 (498)
                      .++........+...|...+++                                                          
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            5544210001333444433322                                                          


Q ss_pred             -------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864          236 -------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL  308 (498)
Q Consensus       236 -------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~  308 (498)
                             +...++++.  ++.++.++++||.+|.....      ..+++++|+.+|+++.+.  +++.++++||.+|.. 
T Consensus       158 ~~~~~~~~~~~~~~a~--~~g~~~A~~~lg~~y~~g~~------~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~-  226 (265)
T d1ouva_         158 TPKDLKKALASYDKAC--DLKDSPGCFNAGNMYHHGEG------ATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN-  226 (265)
T ss_dssp             SCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTCS------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT-
T ss_pred             cccccccchhhhhccc--cccccccccchhhhcccCcc------cccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc-
Confidence                   222223322  23455555555555554110      134569999999999887  578999999999874 


Q ss_pred             chhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864          309 AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS  348 (498)
Q Consensus       309 g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~  348 (498)
                      |.     +.         ...+..|..+|++|........
T Consensus       227 G~-----g~---------~~n~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         227 GE-----GV---------TRNEKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             TS-----SS---------SCCSTTHHHHHHHHHHHTCHHH
T ss_pred             CC-----CC---------ccCHHHHHHHHHHHHHCcCHHH
Confidence            32     00         0015779999999988876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=8.6e-09  Score=98.37  Aligned_cols=144  Identities=15%  Similarity=0.020  Sum_probs=115.0

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864          156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAE  230 (498)
Q Consensus       156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-----~~a~~~lg~~~~~~~~~~g~~~eA~  230 (498)
                      ..++++..+|.++...|+              +++|+..|++++.+.|++     ..+++++|.++..    +|++++|+
T Consensus        10 ~~ae~~~lrA~~~~~~g~--------------~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~   71 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGN--------------PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSL   71 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----CCCHHHHH
Confidence            346778889999999999              999999999999999986     4588999999999    99999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC--------CHHHHHHHH
Q 010864          231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--------FHRAIYNLG  302 (498)
Q Consensus       231 ~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~--------~~~a~~~Lg  302 (498)
                      ..|++++....+. ...+....++.+++.++...|++          ..|+..+.+++.+.+.        ....+..+|
T Consensus        72 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la  140 (366)
T d1hz4a_          72 ALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFL----------QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA  140 (366)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHhcccchhhHHHHHHHHHH
Confidence            7665555444321 11123457789999999999999          9999999999986422        245778899


Q ss_pred             HHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864          303 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY  347 (498)
Q Consensus       303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~  347 (498)
                      .++...|+                   +..+..++.++....+..
T Consensus       141 ~~~~~~~~-------------------~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         141 QLLWAWAR-------------------LDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHTTC-------------------HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHhcc-------------------hhhhHHHHHHHHHHhhhh
Confidence            99999998                   778888888887776543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=1.3e-08  Score=90.21  Aligned_cols=98  Identities=9%  Similarity=-0.007  Sum_probs=89.9

Q ss_pred             HHhhccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHH
Q 010864          134 RSRQRILTFAAKRYANAIERNPED----------------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEA  191 (498)
Q Consensus       134 ~~~~g~~~~A~~~~~~al~~~P~~----------------------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A  191 (498)
                      ....|++++|+..|.+|+.+.++.                      ..++.+++.++..+|+              +++|
T Consensus        21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~--------------~~~A   86 (179)
T d2ff4a2          21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR--------------ASAV   86 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------chHH
Confidence            456899999999999999887644                      3678999999999999              9999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864          192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN  249 (498)
Q Consensus       192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~  249 (498)
                      +..++++++++|.+..+|.+++.+|..    +|++.+|+..|+++...+.+-+.++|.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999    999999999999999999999999996

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.46  E-value=5e-06  Score=76.89  Aligned_cols=158  Identities=15%  Similarity=0.205  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 010864          157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW---  233 (498)
Q Consensus       157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~---  233 (498)
                      ||+++++||..++..++              +++|+++|++|.+.  ++..++++||.+|........++..|...+   
T Consensus         1 ~p~~~~~lG~~~~~~~d--------------~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKD--------------FTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            68899999999999999              99999999999765  689999999999975100123555555433   


Q ss_pred             --------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc----hH-------------
Q 010864          234 --------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV----PA-------------  270 (498)
Q Consensus       234 --------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~----~a-------------  270 (498)
                                                .+|+..|+++....  ...+..++|..+.......    .+             
T Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  142 (265)
T d1ouva_          65 CDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG  142 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccchhhccccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccccc
Confidence                                      23445555554432  2344444444444321110    00             


Q ss_pred             -------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHH
Q 010864          271 -------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI  337 (498)
Q Consensus       271 -------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~  337 (498)
                                   .....+...+..+++++.  ++.++.++++||.+|..-..               ....+..|..+|
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~A~~~lg~~y~~g~~---------------~~~d~~~A~~~~  205 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKAC--DLKDSPGCFNAGNMYHHGEG---------------ATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTCS---------------SCCCHHHHHHHH
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhccc--cccccccccchhhhcccCcc---------------cccchhhhhhhH
Confidence                         001234445555555554  34567777777777665210               011278999999


Q ss_pred             HHHHhcCCCHHH
Q 010864          338 AAAHALKPSYSV  349 (498)
Q Consensus       338 ~~Al~l~p~~~~  349 (498)
                      .++.+.......
T Consensus       206 ~~aa~~g~~~a~  217 (265)
T d1ouva_         206 SKACELENGGGC  217 (265)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             hhhhcccCHHHH
Confidence            999988544333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=5.7e-06  Score=67.36  Aligned_cols=103  Identities=9%  Similarity=-0.051  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcC
Q 010864          188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLALQELSA  266 (498)
Q Consensus       188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~  266 (498)
                      +..-..-|.+-+.-.+ ...+.|+.|.++.+    ....    +..++++..++.++..+|.+. +++++||.+|.++|+
T Consensus        18 l~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~----S~~~----~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd   88 (124)
T d2pqrb1          18 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIK----STDV----NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE   88 (124)
T ss_dssp             HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHH----SSCH----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCC-CcchHHHHHHHHHc----CCcH----HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh
Confidence            3444444444432233 36889999999987    6554    335567789999999999764 899999999999999


Q ss_pred             cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864          267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA  309 (498)
Q Consensus       267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g  309 (498)
                      |          ++|..+++++|+++|++..+....-.+...+.
T Consensus        89 y----------~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          89 Y----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             H----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            9          99999999999999999998877766655444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=3.7e-06  Score=68.51  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864          158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQA  236 (498)
Q Consensus       158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A  236 (498)
                      ..+.++.|+++.....           ..+.++|+..++.+++.+|.+. +++|+||.+|.+    +|+|++|.      
T Consensus        35 ~qt~F~YAw~Lv~S~~-----------~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~------   93 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAK------   93 (124)
T ss_dssp             HHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred             cchHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHH------
Confidence            6889999999987654           3448899999999999999765 799999999999    99999999      


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          237 TKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                       .+++++|+++|++.++....-.+-.++
T Consensus        94 -~~~~~~L~ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1          94 -RYVDTLFEHERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             -HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence             799999999999999988877766544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.29  E-value=6.9e-06  Score=68.16  Aligned_cols=124  Identities=17%  Similarity=0.057  Sum_probs=92.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864          185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL  264 (498)
Q Consensus       185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~  264 (498)
                      ..++++|+.+|+++.+.+  +..++++||...      ..++++|+       ..|+++.+.  +++.+.++||.+|.. 
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~~------~~~~~~a~-------~~~~~aa~~--g~~~a~~~Lg~~y~~-   67 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVSNS------QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYEN-   67 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHTCT------TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHH-
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcccc------ccCHHHHH-------HHHhhhhcc--cchhhhhhHHHhhhh-
Confidence            356999999999998874  566778877543      66777777       677877764  689999999999875 


Q ss_pred             cCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864          265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK  344 (498)
Q Consensus       265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~  344 (498)
                      |..     ...++++|+.+|+++.+.  .++.+.++||.+|..---      ..         ..+.+|..+|++|.++.
T Consensus        68 g~~-----~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~g------v~---------~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          68 GKY-----VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG------VV---------KNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CSS-----SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS------SC---------CCHHHHHHHHHHHHHTT
T ss_pred             ccc-----cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCc------cC---------CCHHHHHHHHHHHHHCC
Confidence            221     134559999999999875  679999999998876210      00         01788999999998876


Q ss_pred             CCHH
Q 010864          345 PSYS  348 (498)
Q Consensus       345 p~~~  348 (498)
                      ....
T Consensus       126 ~~~A  129 (133)
T d1klxa_         126 SEDA  129 (133)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            5443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.12  E-value=1e-05  Score=67.05  Aligned_cols=121  Identities=16%  Similarity=0.116  Sum_probs=89.3

Q ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864          137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI  216 (498)
Q Consensus       137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~  216 (498)
                      ..++++|+.+|+++.+..  ++.+++++|..  ...+              +++|+..|+++.+.  +++.+.++||.+|
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~--------------~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccC--------------HHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            468899999999998874  66777777642  2233              89999999999764  6899999999998


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864          217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF  292 (498)
Q Consensus       217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P  292 (498)
                      ..-.....++.+|+       .+|+++.+.  .++.+.++||.+|..---.      ..|+++|+.+|++|.++..
T Consensus        66 ~~g~~~~~d~~~A~-------~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv------~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          66 ENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGV------VKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHTTC
T ss_pred             hhccccchhhHHHH-------HHHhhhhcc--CcchHHHHHHHHHHcCCcc------CCCHHHHHHHHHHHHHCCC
Confidence            75100012345555       788888765  5799999999998862111      2345999999999988643

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=8.8e-05  Score=61.55  Aligned_cols=90  Identities=14%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCCce
Q 010864          382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGPV  460 (498)
Q Consensus       382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~  460 (498)
                      ....|+++||+|....+.......-..          +.........|++.++..+..+.....+ +.++|.|.|..+..
T Consensus        38 ~~~~WkkrwfvL~~~~~~~~~~L~yy~----------~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~  107 (136)
T d1v5ma_          38 GTAQWQKCRLLLRRAVAGERFRLEFFV----------PPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAE  107 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEES----------STTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCB
T ss_pred             CCCCceEEEEEEeCCcccchhhhhhhC----------cccccCcCcceecccceeeeeeccccCCCCCcEEEEEcCCCcE
Confidence            346799999999876543211111110          0001123445777777777766655555 67999999888876


Q ss_pred             e-eeecChhhhhhHHHHHHHHH
Q 010864          461 F-LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~-~~~~~~~~~~~~~~a~~~~~  481 (498)
                      | |.|+|.++++.|+++|.-+.
T Consensus       108 y~f~A~s~~e~~~Wv~ai~~ai  129 (136)
T d1v5ma_         108 YILETIDSLQKHSWVADIQGCV  129 (136)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHH
Confidence            5 56999999999999998764

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.3e-05  Score=66.82  Aligned_cols=103  Identities=13%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC---
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL---  443 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  443 (498)
                      .+|+|.-..+.........|+++||+|....|..+.......            ..+.....|+|..+..++.+.+-   
T Consensus         5 ~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~------------~~~~~kG~I~L~~~~~v~~~~~~~~~   72 (169)
T d1btka_           5 LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG------------RRGSKKGSIDVEKITCVETVVPEKNP   72 (169)
T ss_dssp             EEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT------------EEEEEEEEEEGGGEEEEEECCCCSSC
T ss_pred             EEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccc------------cccCccceEeccceEEEEeecccCCC
Confidence            466776443333333445799999999887776553322211            00112345666666555433221   


Q ss_pred             ---------------------CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          444 ---------------------TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       444 ---------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                                           +...++.|.|.|.....||.|+|.++++.|++||+-+-
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i  131 (169)
T d1btka_          73 PPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVI  131 (169)
T ss_dssp             CGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence                                 12367889999877778999999999999999998763

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9e-05  Score=57.40  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             hhhhhhhhccchhhhh--hhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCcee
Q 010864          384 SDWKRSQFVLNHEGLQ--QASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  461 (498)
                      ..|+++||+|......  .+.....               .......|++..+..+......+....++|.+.|.....|
T Consensus        14 k~W~krwfvL~~~~~~~ly~~~~~~---------------~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~~~   78 (99)
T d2coca1          14 ETWSEVWAAIPMSDPQVLHLQGGSQ---------------DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWY   78 (99)
T ss_dssp             SCEEEEEEECCTTCTTCEEEECCTT---------------CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEE
T ss_pred             CCccEEEEEEecCCccEEEEECcCc---------------cccccccccccceeeeecccccccCCceEEEEEcCCcEEE
Confidence            4799999999765422  2111111               1123456777766555554445555788899987655579


Q ss_pred             eeecChhhhhhHHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVYT  482 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~~  482 (498)
                      |.|+|.+++..|++||..+.|
T Consensus        79 l~A~s~~e~~~Wi~aL~~Aa~   99 (99)
T d2coca1          79 LSASSAELQQQWLETLSTAAH   99 (99)
T ss_dssp             EEESSHHHHHHHHHHHHHHHS
T ss_pred             EECCCHHHHHHHHHHHHHhcC
Confidence            999999999999999987653

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00015  Score=57.95  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-  445 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  445 (498)
                      +.|||.--.     .....|+++||+|+...|..+.....                ......|+|.++..++++.+.+. 
T Consensus         3 k~GwL~k~~-----~~~~~wkkRwFvL~~~~L~YYk~~~~----------------~~p~g~I~L~~~~~v~~~~~~~~~   61 (112)
T d2coaa1           3 REGWVVHYS-----NKDTLRKRHYWRLDCKCITLFQNNTT----------------NRYYKEIPLSEILTVESAQNFSLV   61 (112)
T ss_dssp             EEEEEEECC-----SSSCCCEEEEEEECSSEEEEESSSSC----------------SSCSEEEETTTCCEEEESCCCSSS
T ss_pred             eEEEEEEEC-----CCCCCeeEEEEEEEcceEEEEeccCC----------------CccceEEeeecccccccccccccc
Confidence            456665331     22357999999999877766544222                12456789999999998888644 


Q ss_pred             ---CCCCeeeEeecCCceeeee-----------cChhhhhhHHHHHHHH
Q 010864          446 ---PPGAGLCIETIHGPVFLVA-----------DSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 ---p~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~a~~~~  480 (498)
                         +..++|.|.|..---||.+           ++.++...|++||+-+
T Consensus        62 ~~~~~~~~F~I~T~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          62 PPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             CTTSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCCccEEEEEeCCeEEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence               3557788886443224544           5677888999999864

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00044  Score=54.59  Aligned_cols=98  Identities=11%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      ...|||.-....... ....|+++||+|.+..+..+.....                ..+...|+|.++..+........
T Consensus        10 ~k~G~L~k~~~~~~~-~~~~W~~r~~vL~~~~L~~y~~~~~----------------~~p~g~i~L~~~~~~~~~~~~~~   72 (111)
T d1u5fa1          10 IKAGYLEKRRKDHSF-LGFEWQKRWCALSKTVFYYYGSDKD----------------KQQKGEFAIDGYDVRMNNTLRKD   72 (111)
T ss_dssp             EEEEEEEEECCCSSC-SSCSEEEEEEEEETTEEEEESSTTC----------------SSCSEEEECTTCEEEECTTSCSS
T ss_pred             eEEEEEEEECCCCCC-CcCCceEEEEEEECCEEEeeccccc----------------cCcceEEEecccEEEeecccccc
Confidence            346777643222111 2348999999999887776543221                11234567776655444344444


Q ss_pred             C-CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010864          446 P-PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 p-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  480 (498)
                      + ..++|.+.+..+.. +|.|+|.+++..|.+||+.|
T Consensus        73 ~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          73 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             TTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            4 56889998777755 77799999999999999876

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00049  Score=53.42  Aligned_cols=81  Identities=15%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL  462 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  462 (498)
                      ...|.++||+|....|..+.....                ......|+|.++..+....+.  -..++|.|.|...-.||
T Consensus        17 ~k~Wk~R~fvL~~~~L~yy~~~~~----------------~~~~g~i~L~~~~~v~~~~~~--~~~~~F~i~~~~r~~~l   78 (100)
T d1faoa_          17 VKTWKTRWFTLHRNELKYFKDQMS----------------PEPIRILDLTECSAVQFDYSQ--ERVNCFCLVFPFRTFYL   78 (100)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTC----------------SSCSEEEEGGGCCEEEEECSS--SSSSEEEEEETTEEEEE
T ss_pred             CCCceEEEEEEECCEEEEEeccCC----------------ccCceEEechheEEEEecccc--ccccccccccCCeEEEE
Confidence            347999999998877765432211                012345777776665544332  25578888876555589


Q ss_pred             eecChhhhhhHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~  481 (498)
                      .|+|.++++.|++||+.+.
T Consensus        79 ~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          79 CAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             ECSSHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHH
Confidence            9999999999999998653

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00084  Score=55.33  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             hhhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          364 PYLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      |--..|||..-     ......|+++||+|....|..+.....                ......|+|.++.++....+ 
T Consensus        10 ~~~~eG~L~k~-----~~~~k~WkkrwfvL~~~~L~yY~~~~d----------------~~~~~~i~L~~~~~~~~~~~-   67 (136)
T d1x1fa1          10 PLYFEGFLLIK-----RSGYREYEHYWTELRGTTLFFYTDKKS----------------IIYVDKLDIVDLTCLTEQNS-   67 (136)
T ss_dssp             CEEEEEEEEEE-----CTTCCSCEEEEEEEETTEEEEESCSSC----------------SSCSEECCCSSCCEEEECCC-
T ss_pred             CccEEEEEEEE-----CCCCCCeEEEEEEEcCCEeEEEeeccc----------------ccccccccccceeeeeeecc-
Confidence            33456887643     122347999999998877765433221                12344567776665553322 


Q ss_pred             CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHH
Q 010864          444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      +--+.+.|+|.|...-.+|.|+|.++++.|..+|.-|.+..
T Consensus        68 ~~~~~~~F~i~~~~~~~~f~Aes~~e~~~Wi~~I~~v~~~~  108 (136)
T d1x1fa1          68 TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS  108 (136)
T ss_dssp             TTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred             cccccceeeecCCCceEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            22356889999777767999999999999999998876543

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0015  Score=50.80  Aligned_cols=96  Identities=21%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             hhhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC
Q 010864          365 YLKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT  444 (498)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (498)
                      -...|||.--.    ......|+++||+|....+..+......                .....+++..+..........
T Consensus         9 ~~~~G~L~k~~----~~~~k~W~kr~~vL~~~~L~~y~~~~~~----------------~~~~~i~l~~~~v~~~~~~~~   68 (107)
T d1upqa_           9 VHIRGWLHKQD----SSGLRLWKRRWFVLSGHCLFYYKDSREE----------------SVLGSVLLPSYNIRPDGPGAP   68 (107)
T ss_dssp             EEEEEEEEEEC----SSSSCCEEEEEEEEETTEEEEESSTTCC----------------SCCEEEEGGGCEEEECCSSCT
T ss_pred             eeEEEEEEEeC----CCCCCCeeEEEEEEECCEEEEecCcccc----------------cccceecccceEEEEeccCcc
Confidence            34577775321    1123469999999998777654332211                123455665544433333334


Q ss_pred             CCCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHH
Q 010864          445 LPPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       445 ~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ....+.|.+.+..+. .||.|+|.++++.|+.||+.+
T Consensus        69 ~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          69 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             TSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            445677777755554 589999999999999999875

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0013  Score=51.98  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  446 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  446 (498)
                      +.|||+....+   .-...|+++||+|....|..+......                .....|++..+ .+..+.+....
T Consensus         5 k~GwL~k~~~~---~~~~~WkkRwFvL~~~~L~yyk~~~~~----------------~~~~~i~l~~~-~v~~~~~~~~~   64 (111)
T d2dyna_           5 RKGWLTINNIG---IMKGGSKEYWFVLTAENLSWYKDDEEK----------------EKKYMLSVDNL-KLRDVEKGFMS   64 (111)
T ss_dssp             EEEEEEETTCC---TTTTSSEEEEEEEESSEEEEESSTTCC----------------CEEEEEECTTE-EEEEECCCSTT
T ss_pred             EEeeEEEECCC---CCcCCceEEEEEEECCEEEEEcchhhc----------------ccccccccccc-eeEeecccccc
Confidence            46777643211   123569999999988777665443221                12334555432 33444444555


Q ss_pred             CCCeeeEeecCC--------ceeeeecChhhhhhHHHHHHHH
Q 010864          447 PGAGLCIETIHG--------PVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       447 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      .-++|.+.+..+        ..||-|+|.++++.|.+||+.+
T Consensus        65 ~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A  106 (111)
T d2dyna_          65 SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  106 (111)
T ss_dssp             CSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             ccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHh
Confidence            667787765433        3699999999999999999864

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0019  Score=49.95  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             ccccCCcccccccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010864          427 IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..|++.++..+.+....  ...++|.+-|.....+|.|+|.++++.|++||+-|
T Consensus        51 ~~i~l~~~~~~~~~~~~--~~~~~f~i~t~~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          51 RSIPLESCFNINKRADS--KNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EEEEGGGEEEEEEECCS--SCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEecceeeEEeecccC--CCceEEEEEeCCeEEEEEcCCHHHHHHHHHHHHhh
Confidence            35666655555443322  24578999887766799999999999999999854

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0026  Score=51.13  Aligned_cols=86  Identities=19%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             chhhhhhhhccch-hh-hhhhcccchhhccccccCCCCCCCCCC-ccccccCCcccccccccCC-CCCCCCeeeEeecCC
Q 010864          383 HSDWKRSQFVLNH-EG-LQQASKNEQKQVTRSLSGRTGDFSPDR-RAIRIEVPDIVSVSACADL-TLPPGAGLCIETIHG  458 (498)
Q Consensus       383 ~~~w~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~  458 (498)
                      ...|.++||+|+. .+ |..+..... .           ...+. ....|++..+..+..+... .....+.|.+.|..=
T Consensus        29 ~k~WkrRwFvL~~~~~~L~yy~~~~~-~-----------~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   96 (126)
T d1v5pa_          29 SGKFLRRYFILDTQANCLLWYMDNPQ-N-----------LAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQ   96 (126)
T ss_dssp             SSCEEEEEEEEETTTTEEEEESSCTT-T-----------SCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSSC
T ss_pred             CCCeeEEEEEEEcCCCeEEEeecccc-c-----------cccceeecccceeeeeeccccccccccccccceEEEcCCCe
Confidence            4579999999964 22 333222111 1           00111 1123444444433332222 223556677765443


Q ss_pred             ceeeeecChhhhhhHHHHHHHH
Q 010864          459 PVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       459 ~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..||.|+|.++++.|++||.-+
T Consensus        97 ~~~l~Aes~~e~~~Wi~aL~~A  118 (126)
T d1v5pa_          97 RYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCHHHHHHHHHHHHHH
Confidence            4589999999999999999865

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0015  Score=50.71  Aligned_cols=83  Identities=12%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-CCCCCCeeeEeecCC-ce
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-TLPPGAGLCIETIHG-PV  460 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~  460 (498)
                      ...|.++||+|....+.........                .+...|++.++......... .-...++|.|-|..+ .+
T Consensus        18 ~~~Wkkr~~vL~~~~L~y~~~~~~~----------------~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~   81 (106)
T d1u5da1          18 GSEWQKRWCVVSRGLFYYYANEKSK----------------QPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTY   81 (106)
T ss_dssp             CEEEEEEEEEEETTEEEEESSTTCS----------------SCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCE
T ss_pred             cCCcEEEEEEEECCEEEEEeccccc----------------ccccccccCCceEeeccccccccCCceeEEEEcCCCcEE
Confidence            3579999999987766543222111                12345566654433322222 233678899987665 46


Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      +|.|+|..+++.|++||.-|-
T Consensus        82 ~f~a~s~~e~~~W~~ai~~~i  102 (106)
T d1u5da1          82 EFTATSPAEARDWVDQISFLL  102 (106)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHH
Confidence            899999999999999998764

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0017  Score=51.32  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=58.4

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhh--hhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEG--LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL  443 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (498)
                      ...|||..-.     .....|+++||+|+..+  |........                ......|++..+.++....+.
T Consensus         9 ~~eG~L~k~~-----~~~k~WkkR~fvL~~~~~~L~~~~~~~~----------------~~p~g~i~l~~~~~v~~~~~~   67 (117)
T d1v5ua_           9 SYEGILYKKG-----AFMKPWKARWFVLDKTKHQLRYYDHRMD----------------TECKGVIDLAEVEAVAPGTPT   67 (117)
T ss_dssp             SEEEEEEECC-----CSSSCCEEEEEEEETTTTEEEEESSSSC----------------SSCCCEEEGGGEEEEECCCCC
T ss_pred             eEEEEEEEEC-----CCCCCceEEEEEEeCCCCEEEecccccc----------------cCcceEEEecceEEEeecccc
Confidence            3467775431     12347999999997643  332222111                112345777777776655543


Q ss_pred             -CCC----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHH
Q 010864          444 -TLP----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       444 -~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  480 (498)
                       ..|    +.+.|.+.+.....||.|+|.++++.|+.+|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~a  109 (117)
T d1v5ua_          68 IGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             TTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             cccccccccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence             222    3455777766556799999999999999999865

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0031  Score=49.84  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=60.7

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      +..|||.-.     ......|+++||+|....|.........                .....++|.++.-.+...+...
T Consensus         9 ~k~G~L~K~-----~~~~k~WkkR~fvL~~~~l~y~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~~   67 (118)
T d1v89a_           9 IKMGWLKKQ-----RSIVKNWQQRYFVLRAQQLYYYKDEEDT----------------KPQGCMYLPGCTIKEIATNPEE   67 (118)
T ss_dssp             EEEEEEEEE-----CSSSSCEEEEEEEEETTEEEEESSSSCC----------------SCSEEECSTTEEEEEECCCSSC
T ss_pred             eEEEEEEEE-----CCCCCCcEEEEEEEECCEEEEecccCcc----------------cccceeccCceEEEEecccccc
Confidence            346666532     1123479999999987766554332221                1233566666554444445566


Q ss_pred             CCCCeeeEeecCCc--------eeeeecChhhhhhHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP--------VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       446 p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      +.-+.|.+.+..+.        .||.|++.++++.|+.||.-+
T Consensus        68 ~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a  110 (118)
T d1v89a_          68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV  110 (118)
T ss_dssp             CCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            66677777755542        489999999999999999877

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.0028  Score=48.86  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC---ce
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG---PV  460 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~  460 (498)
                      ..|.++||+|....|..+......                .....|+|.... +..+.+..-...++|.|.+...   ..
T Consensus        15 k~W~kR~fvL~~~~L~yy~~~~~~----------------~~~~~i~l~~~~-v~~~~~~~~~~~~~f~i~~~~~~~~~~   77 (101)
T d2fjla1          15 HEWYPHYFVLTSSKIYYSEETSSD----------------LLRGVLDVPACQ-IAIRPEGKNNRLFVFSISMPSVAQWSL   77 (101)
T ss_dssp             TEEEEEEEEEETTEEEECCCCSCT----------------CCCEEECSTTCE-EEEETTCSSSCSCEEEEECTTTSSCCE
T ss_pred             CCCeEEEEEEECCEEEEEeccccc----------------eecceEEcCCce-eEeeeeecccccceeEEeccccccEEE
Confidence            479999999998777654321110                112344444322 2223333334557888876543   25


Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ||.|+|.+++..|+.||+-|-
T Consensus        78 ~~~a~s~~e~~~Wi~ai~~~~   98 (101)
T d2fjla1          78 DVAADSQEELQDWVKKIREVA   98 (101)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHH
Confidence            999999999999999999764

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.00094  Score=51.61  Aligned_cols=82  Identities=21%  Similarity=0.339  Sum_probs=55.9

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-CCCCeeeEeecCCceee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-PPGAGLCIETIHGPVFL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~  462 (498)
                      ..|.++||+|....+.........                .....|++..+..+..+.+... ...+.|.+.+.....||
T Consensus        17 ~~Wkkr~fvL~~~~l~yy~~~~~~----------------~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~   80 (103)
T d1eaza_          17 KNWKRRYFQLDENTIGYFKSELEK----------------EPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYV   80 (103)
T ss_dssp             CCEEEEEEEECSSEEEEESSTTCS----------------SCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEE
T ss_pred             CCeeEEEEEEECCEEEEEecccCc----------------ccceEEEccceEEeeccccccccccceEEEEEeCCEEEEE
Confidence            469999999988777665332221                1234566665554444433221 24567888877777899


Q ss_pred             eecChhhhhhHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~  481 (498)
                      .|+|.+++..|.+||..+.
T Consensus        81 ~a~s~~e~~~W~~aI~~ai   99 (103)
T d1eaza_          81 QADSPEEMHSWIKAVSGAI   99 (103)
T ss_dssp             ECSSHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHH
Confidence            9999999999999998763

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.002  Score=49.85  Aligned_cols=79  Identities=8%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL  462 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  462 (498)
                      ...|.++||+|....|.........                .....|+|.++..+..      ...+.|.|.|.....||
T Consensus        15 ~~~W~kr~fvL~~~~L~~~~~~~~~----------------~~~~~i~L~~~~~~~~------~~~~~f~i~~~~~~~~l   72 (102)
T d2coda1          15 KRMFQKRWVKFDGLSISYYNNEKEM----------------YSKGIIPLSAISTVRV------QGDNKFEVVTTQRTFVF   72 (102)
T ss_dssp             SSCCEEEEEEECSSEEEEEESSCCS----------------SCCCEEETTTEEEEEE------ETTTEEEEEESSCCEEE
T ss_pred             CCCceEEEEEEECCEEEEEeccCcc----------------eeEEEEEchhceeecc------ccceeEEEEcCCcEEEE
Confidence            4579999999998777665432221                1233566666555443      35678999876666789


Q ss_pred             eecChhhhhhHHHHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~~~~  483 (498)
                      .|+|.+++..|++||..+...
T Consensus        73 ~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          73 RVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999887544

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0046  Score=49.54  Aligned_cols=84  Identities=14%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             hhhhhhhhccchhhhh-hhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCCcee
Q 010864          384 SDWKRSQFVLNHEGLQ-QASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGPVF  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~  461 (498)
                      ..|+++||+|....+. .+.......       .      ......|++..+..+......... ..+.|.+.|.....|
T Consensus        23 k~WkkRwfvL~~~~~~~yy~~~~~~~-------~------~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~~r~~~   89 (126)
T d1wi1a_          23 KRWKKRFFVLVQVSQYTFAMCSYREK-------K------AEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVI   89 (126)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEECCSS-------S------SCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSSCEEE
T ss_pred             CCceEEEEEEeCCceEEEEEcccccc-------c------ccceeeeeeceeeeeeccccccccccceeEEeccCCeEEE
Confidence            4799999999865443 222111110       0      112234555544433322223333 334466665444569


Q ss_pred             eeecChhhhhhHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~  480 (498)
                      |.|+|.++++.|++||.-+
T Consensus        90 f~A~s~~e~~~Wv~al~~a  108 (126)
T d1wi1a_          90 FASDDEQDRILWVQAMYRA  108 (126)
T ss_dssp             EECSSHHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHH
Confidence            9999999999999999764

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.55  E-value=0.0055  Score=48.77  Aligned_cols=89  Identities=9%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864          383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ...|.++||+|....|..+.........        ..........|.+.. ..+..+.+. -...+.|.+.|..+.+ |
T Consensus        29 ~~~W~kr~~vL~~~~L~yy~~~~~~~~~--------~~~~~~~~~~v~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~   98 (122)
T d1droa_          29 NRSWDKVYMAAKAGRISFYKDQKGYKSN--------PELTFRGEPSYDLQN-AAIEIASDY-TKKKHVLRVKLANGALFL   98 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHHC--------TTCCSSCCCBCCCSS-CCCEECCSS-SSSTTEEEEECSSSCEEE
T ss_pred             CCCceEEEEEEeCCEEEEEcCccccccc--------CcccccccceEeccc-eEEEecccc-ccccceEEEECCCCcEEE
Confidence            4469999999988777665543332210        000001111111111 111122221 1256789999887775 6


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      |.|+|.++++.|+.||+.+.
T Consensus        99 f~a~s~~d~~~Wv~al~~~~  118 (122)
T d1droa_          99 LQAHDDTEMSQWVTSLKAQS  118 (122)
T ss_dssp             EECSSSHHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHH
Confidence            88999999999999999875

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0044  Score=50.35  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             hhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeeee
Q 010864          385 DWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVA  464 (498)
Q Consensus       385 ~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  464 (498)
                      .|.++||+|....|..+.......            ........|+|... .+....+ .-.+.++|.|.|.....||.|
T Consensus        26 ~Wkkr~fvL~~~~L~~y~~~~~~~------------~~~~~~~~i~L~~~-~v~~~~~-~~~r~~~F~i~~~~~~~~f~A   91 (133)
T d2j59m1          26 PWKQMYVVLRGHSLYLYKDKREQT------------TPSEEEQPISVNAC-LIDISYS-ETKRKNVFRLTTSDCECLFQA   91 (133)
T ss_dssp             CCEEEEEEEETTEEEEESCTTCC--------------------CEECSSC-EEEECSS-SCSCSSEEEEECSSCEEEEEC
T ss_pred             CceEEEEEEeCCEEEEEecccccc------------ccccccccceecce-EEEEccc-ccccCceeEEecCCCEEEEEe
Confidence            699999999877666543322211            00111223444321 1221111 123668899998777789999


Q ss_pred             cChhhhhhHHHHHHHHH
Q 010864          465 DSWEALDGWLDAIRLVY  481 (498)
Q Consensus       465 ~~~~~~~~~~~a~~~~~  481 (498)
                      +|.++++.|++||..+.
T Consensus        92 ~s~~e~~~Wi~ai~~a~  108 (133)
T d2j59m1          92 EDRDDMLAWIKTIQESS  108 (133)
T ss_dssp             SSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998753

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0056  Score=47.95  Aligned_cols=97  Identities=22%  Similarity=0.302  Sum_probs=64.0

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      +..|||.--.     .....|.++||+|....+..+.....                ..+...|+|.++..+..+.+.. 
T Consensus         6 ikeG~L~k~~-----~~~k~WkkryfvL~~~~L~~y~~~~~----------------~~p~~~i~l~~~~~~~~~~~~~-   63 (113)
T d1plsa_           6 IREGYLVKKG-----SVFNTWKPMWVVLLEDGIEFYKKKSD----------------NSPKGMIPLKGSTLTSPCQDFG-   63 (113)
T ss_dssp             SEEEEEEEES-----SSSSCCEEEEEEEETTEEEEESSTTC----------------SSCSEEEESSSCCEESSCCSSC-
T ss_pred             eEEEEEEEeC-----CCCCCceEEEEEEECCEEEEEecCCc----------------cccceEEECccCeEEeeecccC-
Confidence            4567765321     12346999999998877766532211                1123457777776666554432 


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       446 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      ...+.|.+-+..+. .+|.++|.++.+.|..||+.+....
T Consensus        64 ~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          64 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             CSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            24566777666665 4899999999999999999886654

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0053  Score=47.07  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccc--cccCC-CCCCCCeeeEeecCCce
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVS--ACADL-TLPPGAGLCIETIHGPV  460 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~p~~~~~~~~~~~~~~  460 (498)
                      ..|+++||+|....+...-...+..              ..+...|++.++..+.  .+.+. .-+..++|.+-|..+..
T Consensus        16 k~WkkR~fvL~~~~~~l~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (104)
T d2i5fa1          16 KNWKVRKFILREDPAYLHYYDPAGA--------------EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVH   81 (104)
T ss_dssp             CCEEEEEEEEETTTTEEEEECTTSC--------------SSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCE
T ss_pred             CCcEEEEEEEECCeeEEEEEcCccc--------------cCccceEeecceEEEEeccCcccccccCccEEEEECCCCeE
Confidence            4699999999765443211111100              0112234444433332  22222 22356678887667664


Q ss_pred             -eeeecChhhhhhHHHHHHHH
Q 010864          461 -FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       461 -~~~~~~~~~~~~~~~a~~~~  480 (498)
                       +|.|+|.++...|++||+.+
T Consensus        82 ~~~~a~s~~e~~~W~~ai~~a  102 (104)
T d2i5fa1          82 YFLQAATPKERTEWIKAIQMA  102 (104)
T ss_dssp             EEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHH
Confidence             88899999999999999876

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0064  Score=50.45  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             hhhhhhhhccchhhh-----hhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC
Q 010864          384 SDWKRSQFVLNHEGL-----QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG  458 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  458 (498)
                      ..|.++||+|.....     ..+-....               ...+...|++..+..+....+   ...++|.|.+..+
T Consensus        38 k~WkkR~fvL~~~~~~~~~L~yy~~~~~---------------~~~~~g~i~l~~~~~~~~~~~---~~~~~F~i~~~~~   99 (150)
T d1wg7a_          38 RSFKRRFFHLIQLGDGSYNLNFYKDEKI---------------SKEPKGSIFLDSCMGVVQNNK---VRRFAFELKMQDK   99 (150)
T ss_dssp             SSCEEEEEEEEECSSSCEEEEEESSSCC---------------SSCCSEEECTTTCCEECCCCS---SCTTEEEEECSSS
T ss_pred             ccceEEEEEEEcCcCCceeEEEEecccc---------------ccccccccccccccccccCcc---ccceEEEEEcCCC
Confidence            369999999976532     11111100               012344566665555443332   3568888886656


Q ss_pred             ce-eeeecChhhhhhHHHHHHHHHHH
Q 010864          459 PV-FLVADSWEALDGWLDAIRLVYTI  483 (498)
Q Consensus       459 ~~-~~~~~~~~~~~~~~~a~~~~~~~  483 (498)
                      .+ +|.|+|.++++.|+.||..+...
T Consensus       100 ~~~~l~A~s~~e~~~Wi~aL~~~i~~  125 (150)
T d1wg7a_         100 SSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            55 78999999999999999977543

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=95.46  E-value=0.0051  Score=48.99  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=29.1

Q ss_pred             CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010864          447 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       447 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..+.|.+.+..+.+ +|.|+|.++++.|++||..+
T Consensus        81 ~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a  115 (123)
T d1wjma_          81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA  115 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            56888888777775 88999999999999999854

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.0055  Score=53.89  Aligned_cols=82  Identities=9%  Similarity=0.130  Sum_probs=53.3

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccccc-CCCCCCCCeeeEeecCCce-e
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACA-DLTLPPGAGLCIETIHGPV-F  461 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~-~  461 (498)
                      ..|.++||+|....|..+......                .....|+|..+..+.... +..-...++|.|-|..+.+ |
T Consensus       122 ~~Wkkr~fvL~~~~L~yy~~~~~~----------------~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~  185 (209)
T d1u5ea1         122 FEWQKRWCALSKTVFYYYGSDKDK----------------QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQ  185 (209)
T ss_dssp             CCCEEEEEEEETTEEEEESSTTCS----------------SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEE
T ss_pred             ccceEEEEEEECCEEEEEecCCCC----------------ccceEEEecceeeeeccccccccCCCcEEEEEcCCCCEEE
Confidence            369999999988777654432221                123445665443332211 1222345788887766655 6


Q ss_pred             eeecChhhhhhHHHHHHHHH
Q 010864          462 LVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       462 ~~~~~~~~~~~~~~a~~~~~  481 (498)
                      |.|+|..+++.|+.||+.|.
T Consensus       186 f~a~s~~e~~~Wi~al~~~i  205 (209)
T d1u5ea1         186 FTAASPKDAEEWVQQLKFIL  205 (209)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            89999999999999999875

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0043  Score=47.83  Aligned_cols=91  Identities=22%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  446 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  446 (498)
                      +.|||..-...  ......|.++||+|....|......+.                 .....|+|. ..++.++.+  ..
T Consensus         7 k~G~L~k~~~~--g~~~k~W~kRwfvL~~~~L~y~~~~~~-----------------~~~~~i~l~-~~~v~~~~~--~~   64 (101)
T d2elba2           7 KAGYLNARNKT--GLVSSTWDRQFYFTQGGNLMSQARGDV-----------------AGGLAMDID-NCSVMAVDC--ED   64 (101)
T ss_dssp             CEEEEEECSCC--C----CCCEEEEEEETTEEEEECTTCC-----------------CE----EEE-ECCCCCCCC--CC
T ss_pred             EeEEEEEeccC--CCCccccEEEEEEEeCCEEEEEccCCc-----------------ccceEEEec-ccccccccc--cC
Confidence            45776532111  122447999999998766643221111                 112234442 233444333  34


Q ss_pred             CCCeeeEeecCCc--eeeeecChhhhhhHHHHHHH
Q 010864          447 PGAGLCIETIHGP--VFLVADSWEALDGWLDAIRL  479 (498)
Q Consensus       447 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~  479 (498)
                      +.+.|.|-+..+.  .+|-|+|.++++.|..||.=
T Consensus        65 ~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          65 RRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             SSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             CcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            6677888766553  68999999999999999974

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0083  Score=46.62  Aligned_cols=79  Identities=14%  Similarity=0.097  Sum_probs=50.4

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|.++||+|.+..|.........                .....|++.+..-....  ..-...++|.|.+..+-+ +|
T Consensus        22 ~~W~kr~~vL~~~~L~~~k~~~~~----------------~~~~~i~l~~~~~~~~~--~~~~~~~~F~i~~~~~~~~~f   83 (109)
T d1wgqa_          22 KPWKHLWFVIKNKVLYTYAASEDV----------------AALESQPLLGFTVTLVK--DENSESKVFQLLHKGMVFYVF   83 (109)
T ss_dssp             SCCEEEEEEEETTEEEEESCTTCS----------------SCSEEEECSSEEEEECC--CSSCSSSEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEeCCEEEEecccccc----------------ccccccccceeeeeecc--cccccceeeeeecccceEEEE
Confidence            469999999998777543332211                12334555544322222  122356788887654444 77


Q ss_pred             eecChhhhhhHHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRLV  480 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~~  480 (498)
                      .|+|.++++.|+.||+.+
T Consensus        84 ~a~s~~~~~~Wi~ai~~a  101 (109)
T d1wgqa_          84 KADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHH
Confidence            899999999999999987

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0063  Score=50.63  Aligned_cols=90  Identities=12%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 010864          367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP  446 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  446 (498)
                      +.|++.--.       +..|+++||+|....+..+-.+..                ......|+|.....++      ..
T Consensus        50 K~G~L~Kr~-------~~~wkkR~FvL~~~~L~YYkd~~~----------------~~~kG~I~L~~~~~v~------~~  100 (147)
T d1w1ha_          50 KMGPVDKRK-------GLFARRRQLLLTEGPHLYYVDPVN----------------KVLKGEIPWSQELRPE------AK  100 (147)
T ss_dssp             EEEEEEECC-------TTSCEEEEEEEETTTEEEEEETTT----------------TEEEEEECCCTTCEEE------EE
T ss_pred             EEEEEEeec-------CCcceEEEEEEcCCeeEEEeCCCc----------------ccccceEEeccccccc------cc
Confidence            467776421       235999999999877776543222                1234566766544443      35


Q ss_pred             CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHhh
Q 010864          447 PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYAR  486 (498)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  486 (498)
                      .+..|.|.| ++.+|.++++..++..|++||.-|...+..
T Consensus       101 ~~~~F~I~t-~~Rty~l~a~~~d~~~Wv~aI~~v~~~~~~  139 (147)
T d1w1ha_         101 NFKTFFVHT-PNRTYYLMDPSGNAHKWCRKIQEVWRQRYQ  139 (147)
T ss_dssp             ETTEEEEEC-SSCEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred             cCceEEEec-CceEEEEEcChHHHHHHHHHHHHHHHHHhh
Confidence            677899986 455766666778899999999988766543

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=94.66  E-value=0.011  Score=45.60  Aligned_cols=84  Identities=12%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|.++||+|....|..+........       .+..   .....|++.... +.+..+.+ -.-+.|.+.+..|.+ +|
T Consensus        21 ~~Wk~r~~vL~~~~L~~yk~~~~~~~-------~~~~---~~~~~i~l~~~~-~~~~~~~~-~~~~~f~i~~~~~~~~~~   88 (106)
T d1btna_          21 RSWHNVYCVINNQEMGFYKDAKSAAS-------GIPY---HSEVPVSLKEAI-CEVALDYK-KKKHVFKLRLSDGNEYLF   88 (106)
T ss_dssp             CCCEEEEEEEETTEEEEESSHHHHHH-------TCCS---SSCCCEECTTCE-EEECSSCC-SSSSEEEEECTTSCEEEE
T ss_pred             CCCcEEEEEEECCEEEEEeChhhccc-------cccc---CcceeEEeccce-eeeccccc-cCcceEeecccCCCEEEE
Confidence            46999999998766665443322110       0000   011123333221 11221211 134789999888876 68


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.++++.|++||..
T Consensus        89 ~a~s~~e~~~W~~ai~~  105 (106)
T d1btna_          89 QAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             ECSSHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHh
Confidence            89999999999999974

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0081  Score=45.51  Aligned_cols=78  Identities=15%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864          384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL  462 (498)
Q Consensus       384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~  462 (498)
                      ..|.++||+|....|..+......               ..+...+++... .+.+..+..  ..+.|.+-+..+.+ +|
T Consensus        13 ~~WkkR~fvL~~~~L~yyk~~~~~---------------~~~~~~i~l~~~-~v~~~~~~~--~~~~f~~~~~~~~~~~l   74 (95)
T d2cofa1          13 SQWKSRWCSVRDNHLHFYQDRNRS---------------KVAQQPLSLVGC-EVVPDPSPD--HLYSFRILHKGEELAKL   74 (95)
T ss_dssp             TEEEEEEEEECSSCEEEECSSTTC---------------SEEEEEECTTTC-EEECCCBTT--BSCEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEECCEEEEEeccccc---------------ccccccccccce-EEEeccccc--ceecceeccccceeEEe
Confidence            479999999987777654322211               012234444433 233333322  33566665545544 79


Q ss_pred             eecChhhhhhHHHHHHH
Q 010864          463 VADSWEALDGWLDAIRL  479 (498)
Q Consensus       463 ~~~~~~~~~~~~~a~~~  479 (498)
                      .|+|.++++.|+.+|+-
T Consensus        75 ~A~s~~e~~~Wi~~L~~   91 (95)
T d2cofa1          75 EAKSSEEMGHWLGLLLS   91 (95)
T ss_dssp             ECSSHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHH
Confidence            99999999999999974

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0066  Score=47.74  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCCCeeeEeecCCc----eeeeecChhhhhhHHHHHHHHHHHHh
Q 010864          446 PPGAGLCIETIHGP----VFLVADSWEALDGWLDAIRLVYTIYA  485 (498)
Q Consensus       446 p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~  485 (498)
                      +..+.|.+.+..+.    .+|.|+|.++++.|+.||.-+..-+.
T Consensus        69 ~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~  112 (118)
T d1unqa_          69 PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK  112 (118)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            35567777755443    47899999999999999998876543

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.21  E-value=0.016  Score=45.90  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=58.1

Q ss_pred             hhhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC
Q 010864          366 LKAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL  445 (498)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (498)
                      +..|||.--.    ......|.++||+|....|..+.....                  ....|++..+..++..   +.
T Consensus        11 i~eG~L~K~g----~~~~~~WkkR~fvL~~~~L~yy~~~~~------------------~~~~i~l~~~~~v~~~---~~   65 (119)
T d1omwa2          11 IMHGYMSKMG----NPFLTQWQRRYFYLFPNRLEWRGEGEA------------------PQSLLTMEEIQSVEET---QI   65 (119)
T ss_dssp             CEEEEEEECC----------CEEEEEEEETTEEEEECTTSC------------------CCEEEEGGGEEEEEEE---ES
T ss_pred             EEEEEEEEEC----CCCCCCeEEEEEEEEcCeEEEEecccc------------------cCccceeccccccccc---cc
Confidence            3467766431    112346999999998877665421111                  1223556556555543   34


Q ss_pred             CCCCeeeEeecCCc-eeeeecChhhhhhHHHHHHHHHHHH
Q 010864          446 PPGAGLCIETIHGP-VFLVADSWEALDGWLDAIRLVYTIY  484 (498)
Q Consensus       446 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~  484 (498)
                      ...+.|.+.+..+. .||.|+|.++++.|..||+-+..-.
T Consensus        66 ~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~  105 (119)
T d1omwa2          66 KERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREA  105 (119)
T ss_dssp             SSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            46677877766664 5899999999999999998765543

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.022  Score=45.48  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             eeeecChhhhhhHHHHHHHHH
Q 010864          461 FLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       461 ~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      +|.|+|.++++.|++||+.+.
T Consensus       103 ~l~A~s~~e~~~Wi~al~~~i  123 (130)
T d1v88a_         103 IIRATSESDGRCWMDALELAL  123 (130)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHh
Confidence            578999999999999998774

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.16  Score=36.55  Aligned_cols=46  Identities=24%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864          208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG  258 (498)
Q Consensus       208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg  258 (498)
                      .+-..+..+..    .|+|++|++++++|..++..|+++ +.+..++..|-
T Consensus        10 ~~~RrAer~l~----~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SLq   55 (83)
T d2crba1          10 QQSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSLE   55 (83)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34455555666    999999999999999999999998 77887776554

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.056  Score=41.77  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHH
Q 010864          447 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       447 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~  480 (498)
                      ..+.|.+-+..+.. ||.|+|.++++.|..||+-|
T Consensus        81 ~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          81 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            34557776555554 78899999999999999865

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.02  E-value=0.5  Score=35.26  Aligned_cols=48  Identities=15%  Similarity=0.077  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      ...+.+|+....+|++.+               .    .|+|++|+.+|.+|+..+..++..+|+..
T Consensus         9 ~~~~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~e~~~~   56 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS   56 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             ChHHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence            345888999888888755               3    89999999999999999999999887644

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.90  E-value=0.091  Score=41.26  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             eeeeecChhhhhhHHHHHHHH
Q 010864          460 VFLVADSWEALDGWLDAIRLV  480 (498)
Q Consensus       460 ~~~~~~~~~~~~~~~~a~~~~  480 (498)
                      .+|.|+|.++++.|++||.-+
T Consensus        98 ~~f~a~s~~e~~~Wi~aL~~~  118 (127)
T d1fgya_          98 YRISAPSPEEKEEWMKSIKAS  118 (127)
T ss_dssp             EEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHH
Confidence            489999999999999999876

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=0.45  Score=34.10  Aligned_cols=46  Identities=20%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864          187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP  251 (498)
Q Consensus       187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~  251 (498)
                      .+++|+....+|++.+               .    .|+|.+|+.+|.+|+..|..++..++++.
T Consensus         7 ~l~~A~~l~~~Av~~D---------------~----~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~   52 (77)
T d1wr0a1           7 NLQKAIDLASKAAQED---------------K----AGNYEEALQLYQHAVQYFLHVVKYEAQGD   52 (77)
T ss_dssp             HHHHHHHHHHHHHHHH---------------H----TTCCSSHHHHHHHHHHHHHHHHHHSCCTG
T ss_pred             HHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhccCCCH
Confidence            4788888888887755               3    89999999999999999999999887654

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.06  E-value=0.53  Score=36.52  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             cccccCCcccccccccCC--------CCCCCCeeeE--eecCCceeeeecChhhhhhHHHHHHHHH
Q 010864          426 AIRIEVPDIVSVSACADL--------TLPPGAGLCI--ETIHGPVFLVADSWEALDGWLDAIRLVY  481 (498)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~  481 (498)
                      ...|++.+|.+|....+.        ..|+...|.|  .+..-.++|+|.|.+..+.|+++|+.+.
T Consensus        53 ~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          53 SQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             TTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            457999999999876662        3344434444  4444458999999999999999999764